AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090550 MtrunA17_Chr1g0210521 94.538 238 1 1 6 231 1 238 2.53e-166 458
Msa0090550 MtrunA17_Chr1g0169861 49.583 240 90 3 4 231 49 269 1.75e-83 249
Msa0090550 MtrunA17_Chr4g0010271 52.101 238 83 2 6 231 1 219 5.01e-83 246
Msa0090550 MtrunA17_Chr7g0237561 52.301 239 81 3 6 231 1 219 3.47e-81 242
Msa0090550 MtrunA17_Chr2g0296021 48.319 238 92 2 6 231 1 219 1.69e-80 240
Msa0090550 MtrunA17_Chr4g0043521 53.052 213 69 3 7 207 4 197 1.57e-79 238
Msa0090550 MtrunA17_Chr2g0291651 53.991 213 67 3 7 207 6 199 9.71e-79 236
Msa0090550 MtrunA17_Chr7g0237521 47.196 214 82 3 6 207 1 195 3.19e-67 206
Msa0090550 MtrunA17_Chr1g0169851 45.570 158 52 2 57 199 15 153 3.74e-42 140
Msa0090550 MtrunA17_Chr4g0010211 51.200 125 42 1 58 182 4 109 2.69e-41 136
Msa0090550 MtrunA17_Chr5g0441741 32.759 232 122 4 10 228 2 212 3.76e-40 137
Msa0090550 MtrunA17_Chr4g0026121 31.897 232 124 5 10 228 2 212 9.26e-37 128
Msa0090550 MtrunA17_Chr4g0064371 31.799 239 120 6 10 231 2 214 2.94e-36 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090550 AT3G54300.3 81.513 238 32 1 6 231 1 238 1.25e-139 391
Msa0090550 AT3G54300.2 81.513 238 32 1 6 231 1 238 1.25e-139 391
Msa0090550 AT3G54300.1 81.513 238 32 1 6 231 1 238 1.25e-139 391
Msa0090550 AT1G04760.2 52.521 238 82 2 6 231 1 219 3.70e-84 249
Msa0090550 AT1G04760.1 52.521 238 82 2 6 231 1 219 3.70e-84 249
Msa0090550 AT2G32670.1 53.361 238 80 2 6 231 66 284 2.93e-82 247
Msa0090550 AT2G33120.1 53.361 238 80 3 6 231 1 219 8.35e-82 244
Msa0090550 AT1G04750.1 53.361 238 80 3 6 231 1 219 9.63e-81 241
Msa0090550 AT2G33120.2 51.626 246 80 3 6 231 1 227 2.36e-80 240
Msa0090550 AT2G33110.1 43.277 238 100 4 6 231 1 215 1.22e-58 185
Msa0090550 AT4G15780.1 44.949 198 77 3 6 190 1 179 2.87e-56 177
Msa0090550 AT2G33110.2 46.409 181 66 3 6 174 1 162 4.37e-51 164
Msa0090550 AT1G04750.2 55.696 158 51 2 74 231 3 141 1.19e-50 162
Msa0090550 AT1G04750.4 55.696 158 51 2 74 231 3 141 1.19e-50 162
Msa0090550 AT1G04750.3 55.696 158 51 2 74 231 3 141 1.19e-50 162
Msa0090550 AT5G11150.1 34.322 236 115 5 10 231 2 211 5.14e-41 140
Msa0090550 AT5G11150.2 34.322 236 115 5 10 231 2 211 8.41e-41 139
Msa0090550 AT4G32150.1 34.450 209 103 4 10 205 2 189 1.57e-37 130
Msa0090550 AT5G22360.1 30.472 233 127 4 10 228 2 213 5.00e-37 129
Msa0090550 AT2G25340.1 33.190 232 121 4 10 228 2 212 7.80e-35 124
Msa0090550 AT2G33120.3 63.953 86 31 0 146 231 52 137 6.60e-28 103
Msa0090550 AT3G24890.2 51.163 86 36 2 133 212 22 107 5.00e-21 85.5
Msa0090550 AT3G24890.1 65.909 44 15 0 133 176 22 65 2.30e-14 66.2
Msa0090550 AT3G24890.4 65.909 44 15 0 133 176 22 65 2.30e-14 66.2
Msa0090550 AT3G24890.3 65.909 44 15 0 133 176 22 65 2.30e-14 66.2
Msa0090550 AT3G24890.5 65.909 44 15 0 133 176 22 65 2.30e-14 66.2

Find 69 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATCTTGATAGAGAATT+TGG 0.088044 1_2:+72619068 Msa0090550:CDS
AAGAAATTGAATTCTGTATT+TGG 0.098661 1_2:+72621657 Msa0090550:three_prime_UTR
TTATCTTAGTTATAATATTA+TGG 0.161768 1_2:+72621595 Msa0090550:CDS
TTCCACTTGTACATTGAATT+TGG 0.179897 1_2:+72621710 Msa0090550:three_prime_UTR
AATTTGGTGCATGGAATTTA+TGG 0.221994 1_2:+72621726 Msa0090550:three_prime_UTR
TGGGGAGAAGATTGAACTTT+TGG 0.275778 1_2:+72621369 Msa0090550:CDS
ATCACAAGAATAAGTGTATT+TGG 0.280428 1_2:-72617297 None:intergenic
ATTATAGCTGACATAATAAC+TGG 0.284197 1_2:+72621809 Msa0090550:three_prime_UTR
TATCTTAGTTATAATATTAT+GGG 0.315233 1_2:+72621596 Msa0090550:CDS
GATAGTTTACTCATTTCTTC+AGG 0.318737 1_2:-72619213 None:intergenic
AGAAATTGAATTCTGTATTT+GGG 0.331639 1_2:+72621658 Msa0090550:three_prime_UTR
CTCCCACCATCAGCTTCATT+TGG 0.335673 1_2:-72621563 None:intergenic
GTTATGCAGGCCAAGTCTTA+AGG 0.350766 1_2:+72619164 Msa0090550:intron
TGCTAAAACAACAGTTCCTT+TGG 0.361705 1_2:-72617201 None:intergenic
AACGGAAAACTTGCAGTTCC+AGG 0.368337 1_2:+72621399 Msa0090550:CDS
GCAGAACATACTCAATATAC+TGG 0.382797 1_2:+72617221 Msa0090550:CDS
TTAGCTGCCTGCCCTGCCTC+TGG 0.383925 1_2:-72621515 None:intergenic
GGCTGACAGCTTCCAGAGGC+AGG 0.400419 1_2:+72621503 Msa0090550:intron
ATTCTGTATTTGGGCACATA+AGG 0.404731 1_2:+72621667 Msa0090550:three_prime_UTR
ACAATCTTGATAGAGAATTT+GGG 0.414431 1_2:+72619069 Msa0090550:CDS
TATTATGGGTTATTGCTTGT+GGG 0.421870 1_2:+72621610 Msa0090550:CDS
ACAGCTTCCAGAGGCAGGGC+AGG 0.424399 1_2:+72621508 Msa0090550:CDS
GATGACTTTAACCAGCGTTA+TGG 0.433674 1_2:+72618960 Msa0090550:CDS
TTATGCAGGCCAAGTCTTAA+GGG 0.435187 1_2:+72619165 Msa0090550:intron
GGCAGGGCAGGCAGCTAAGA+AGG 0.436079 1_2:+72621520 Msa0090550:CDS
GAGTAAACTATCAAAGTTGA+AGG 0.456658 1_2:+72619224 Msa0090550:CDS
GTGTATTTGGTGCTATTTGA+AGG 0.464053 1_2:-72617284 None:intergenic
GTTGTTGCTGATGAATCAAT+TGG 0.466016 1_2:+72618900 Msa0090550:CDS
ATTATGGGTTATTGCTTGTG+GGG 0.475053 1_2:+72621611 Msa0090550:CDS
TTCTGTATTTGGGCACATAA+GGG 0.476777 1_2:+72621668 Msa0090550:three_prime_UTR
GTTTACTCATTTCTTCAGGA+TGG 0.480252 1_2:-72619209 None:intergenic
ATATTATGGGTTATTGCTTG+TGG 0.493605 1_2:+72621609 Msa0090550:CDS
GGCTCAAATAACTGAGGTCA+AGG 0.502250 1_2:+72619245 Msa0090550:CDS
TTTACTCATTTCTTCAGGAT+GGG 0.513008 1_2:-72619208 None:intergenic
CACCAAATTCAATGTACAAG+TGG 0.530457 1_2:-72621712 None:intergenic
TTATGGGTTATTGCTTGTGG+GGG 0.536160 1_2:+72621612 Msa0090550:CDS
AAATACACTTATTCTTGTGA+TGG 0.544278 1_2:+72617299 Msa0090550:CDS
CTCAAATAACTGAGGTCAAG+GGG 0.547294 1_2:+72619247 Msa0090550:CDS
ATATATAGCTTTGTTGCCAA+AGG 0.547808 1_2:+72617185 Msa0090550:CDS
TGCATATGCCCCTTAAGACT+TGG 0.551661 1_2:-72619174 None:intergenic
CATCATCATCGGCAAGTGGA+TGG 0.552635 1_2:-72619007 None:intergenic
ATGAAGCTGATGGTGGGAGG+AGG 0.554494 1_2:+72621567 Msa0090550:CDS
TGAGGTCAAGGGGATAATGA+TGG 0.556128 1_2:+72619257 Msa0090550:CDS
ATAATATTATAACTAAGATA+AGG 0.566690 1_2:-72621593 None:intergenic
TGAAGCTTGTGCTATACTGC+TGG 0.576605 1_2:+72621768 Msa0090550:three_prime_UTR
ATCATCGTCCTCATCATCAT+CGG 0.586609 1_2:-72619018 None:intergenic
ATTCAAGCATTGAACAGCAA+TGG 0.590197 1_2:-72617255 None:intergenic
GCTCAAATAACTGAGGTCAA+GGG 0.590488 1_2:+72619246 Msa0090550:CDS
TTATAGCTGACATAATAACT+GGG 0.591390 1_2:+72621810 Msa0090550:three_prime_UTR
TGTACATTGAATTTGGTGCA+TGG 0.594394 1_2:+72621717 Msa0090550:three_prime_UTR
CTCCAAATGAAGCTGATGGT+GGG 0.596961 1_2:+72621561 Msa0090550:CDS
TCCTCATCATCATCGGCAAG+TGG 0.601763 1_2:-72619011 None:intergenic
AATGATGGATAATATTGAGA+AGG 0.603558 1_2:+72619272 Msa0090550:CDS
TCTCCAAATGAAGCTGATGG+TGG 0.603558 1_2:+72621560 Msa0090550:CDS
TAATACTAGCACCATAACGC+TGG 0.607184 1_2:-72618971 None:intergenic
TCCACTTGCCGATGATGATG+AGG 0.607967 1_2:+72619010 Msa0090550:CDS
TTTGAAGGTGTTGGATCGTG+GGG 0.608778 1_2:+72621351 Msa0090550:intron
GCTGACAGCTTCCAGAGGCA+GGG 0.612920 1_2:+72621504 Msa0090550:CDS
TATGCAGGCCAAGTCTTAAG+GGG 0.622221 1_2:+72619166 Msa0090550:intron
GGCAGCTAAGAAGGAAGATG+TGG 0.627425 1_2:+72621529 Msa0090550:CDS
AGCTGACATAATAACTGGGG+TGG 0.627919 1_2:+72621814 Msa0090550:three_prime_UTR
TTGCTGATGAATCAATTGGA+AGG 0.631302 1_2:+72618904 Msa0090550:CDS
TTGATTCATCAGCAACAACA+AGG 0.631330 1_2:-72618896 None:intergenic
TTTGTGAGAATGAGTCAAAG+GGG 0.636577 1_2:+72617158 Msa0090550:CDS
CAAATGAAGCTGATGGTGGG+AGG 0.647708 1_2:+72621564 Msa0090550:CDS
GAATCTCCAAATGAAGCTGA+TGG 0.655894 1_2:+72621557 Msa0090550:CDS
TTTAGGCTGACAGCTTCCAG+AGG 0.685949 1_2:+72621499 Msa0090550:intron
GTTGAAGGCTCAAATAACTG+AGG 0.694430 1_2:+72619239 Msa0090550:CDS
TATAGCTGACATAATAACTG+GGG 0.717486 1_2:+72621811 Msa0090550:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAAAAATATATATT+GGG + chr1_2:72617650-72617669 Msa0090550:intron 10.0%
!! ATAATATTATAACTAAGATA+AGG - chr1_2:72621596-72621615 None:intergenic 10.0%
!! TTATCTTAGTTATAATATTA+TGG + chr1_2:72621595-72621614 Msa0090550:CDS 10.0%
!! TATCTTAGTTATAATATTAT+GGG + chr1_2:72621596-72621615 Msa0090550:CDS 10.0%
!! CACTTGAAAAAAATATATAT+TGG + chr1_2:72617649-72617668 Msa0090550:intron 15.0%
!!! TCAAAAAAAAATTAGTTTCT+AGG + chr1_2:72618164-72618183 Msa0090550:intron 15.0%
!! AACAAAATATAATCTTTCAA+CGG - chr1_2:72618535-72618554 None:intergenic 15.0%
!!! ATTATAACGATTTGTTTTTT+TGG - chr1_2:72618777-72618796 None:intergenic 15.0%
!!! TTAAACCTAAATCATTTTTA+CGG - chr1_2:72619839-72619858 None:intergenic 15.0%
!!! AAAAATGATTTAGGTTTAAA+TGG + chr1_2:72619840-72619859 Msa0090550:intron 15.0%
!! CTGAAGAATATAATTATATA+AGG - chr1_2:72620036-72620055 None:intergenic 15.0%
!!! ATATTTTATGAGTAATCAAA+AGG - chr1_2:72621006-72621025 None:intergenic 15.0%
!!! AATTTTTCTTTTGGTTAAAT+TGG + chr1_2:72621090-72621109 Msa0090550:intron 15.0%
!!! ATTTTTCTTTTGGTTAAATT+GGG + chr1_2:72621091-72621110 Msa0090550:intron 15.0%
!! ATTCTAATTTAAGTATTCAA+CGG - chr1_2:72621138-72621157 None:intergenic 15.0%
!! TGAAACATAAATCATATATA+CGG - chr1_2:72621227-72621246 None:intergenic 15.0%
!! ATTTATTTGCGTTAAAATTT+AGG + chr1_2:72621482-72621501 Msa0090550:intron 15.0%
!!! TATAGTAAGTTTTTGTTGTT+TGG + chr1_2:72617440-72617459 Msa0090550:intron 20.0%
!!! TTTTTTTCAAGTGTGTTAAT+CGG - chr1_2:72617642-72617661 None:intergenic 20.0%
!!! CTGCATAAATAATAGTTTTT+AGG + chr1_2:72618131-72618150 Msa0090550:intron 20.0%
!! AAAATAGTAGGATTCTTTAT+TGG + chr1_2:72618307-72618326 Msa0090550:intron 20.0%
!! AATAATGTAAATGTTTGATG+TGG - chr1_2:72618340-72618359 None:intergenic 20.0%
!! GATGAAATATAATCTTTCAA+CGG - chr1_2:72618502-72618521 None:intergenic 20.0%
!!! TTACTATTCTAGTTTTCTTT+AGG + chr1_2:72620078-72620097 Msa0090550:intron 20.0%
!! ATAAAACCTTCCAAAAAAAT+TGG - chr1_2:72620562-72620581 None:intergenic 20.0%
!! TAGCTAATAAAAATTGACAT+GGG + chr1_2:72620645-72620664 Msa0090550:intron 20.0%
!! ATTGTCTTTATCTTTATAAC+AGG + chr1_2:72620839-72620858 Msa0090550:intron 20.0%
!! ATGTTGTTAAATATAAGAGA+AGG - chr1_2:72620866-72620885 None:intergenic 20.0%
!!! AACTGTGATAATTTTTCTTT+TGG + chr1_2:72621081-72621100 Msa0090550:intron 20.0%
!! TTCTAATTTAAGTATTCAAC+GGG - chr1_2:72621137-72621156 None:intergenic 20.0%
!!! ATATACTATACTTTTTATGC+CGG + chr1_2:72621156-72621175 Msa0090550:intron 20.0%
!! AAGAAATTGAATTCTGTATT+TGG + chr1_2:72621657-72621676 Msa0090550:three_prime_UTR 20.0%
!! AGAAATTGAATTCTGTATTT+GGG + chr1_2:72621658-72621677 Msa0090550:three_prime_UTR 20.0%
!!! GAATTTATGGTTACTTTTAT+TGG + chr1_2:72621739-72621758 Msa0090550:three_prime_UTR 20.0%
! ATCACAAGAATAAGTGTATT+TGG - chr1_2:72617300-72617319 None:intergenic 25.0%
! AAATACACTTATTCTTGTGA+TGG + chr1_2:72617299-72617318 Msa0090550:CDS 25.0%
! TAAAAAACGCTATAATTGCA+GGG - chr1_2:72617413-72617432 None:intergenic 25.0%
! AAGAGAGATAATGAAAAAAC+AGG + chr1_2:72617697-72617716 Msa0090550:intron 25.0%
! AGAGAGATAATGAAAAAACA+GGG + chr1_2:72617698-72617717 Msa0090550:intron 25.0%
! CAAAAACAAAAGAAGATAGA+AGG + chr1_2:72617834-72617853 Msa0090550:intron 25.0%
!! TTTTGTGAACAAACCATATT+AGG + chr1_2:72617924-72617943 Msa0090550:intron 25.0%
! ATTGTTGTGTATGCTAATAT+GGG + chr1_2:72617947-72617966 Msa0090550:intron 25.0%
!! TAATCCAAAAGTATGTTATG+TGG - chr1_2:72617986-72618005 None:intergenic 25.0%
!! ACATAACATACTTTTGGATT+AGG + chr1_2:72617985-72618004 Msa0090550:intron 25.0%
!! CATAACATACTTTTGGATTA+GGG + chr1_2:72617986-72618005 Msa0090550:intron 25.0%
!!! ATAACATACTTTTGGATTAG+GGG + chr1_2:72617987-72618006 Msa0090550:intron 25.0%
!! ATCTCTAAAAATTTGACCAA+AGG + chr1_2:72618193-72618212 Msa0090550:intron 25.0%
! ACATATTCAGTAGGTTATTT+GGG - chr1_2:72618424-72618443 None:intergenic 25.0%
! TACATATTCAGTAGGTTATT+TGG - chr1_2:72618425-72618444 None:intergenic 25.0%
! TACAATCTTGATAGAGAATT+TGG + chr1_2:72619068-72619087 Msa0090550:CDS 25.0%
! ACAATCTTGATAGAGAATTT+GGG + chr1_2:72619069-72619088 Msa0090550:CDS 25.0%
!!! AATGATGGATAATATTGAGA+AGG + chr1_2:72619272-72619291 Msa0090550:CDS 25.0%
! TTGCCTTTAAATGATATACA+AGG + chr1_2:72619436-72619455 Msa0090550:intron 25.0%
! TGCCTTTAAATGATATACAA+GGG + chr1_2:72619437-72619456 Msa0090550:intron 25.0%
! ATCCCTTGTATATCATTTAA+AGG - chr1_2:72619442-72619461 None:intergenic 25.0%
!!! TGTATTTTGATTATGCTTTC+TGG + chr1_2:72619497-72619516 Msa0090550:intron 25.0%
! AGGAGAATATATTAGATAGA+AGG + chr1_2:72619758-72619777 Msa0090550:intron 25.0%
!! TTATATGCATGCATTTTCTA+AGG + chr1_2:72620153-72620172 Msa0090550:intron 25.0%
!!! GAGAAATCTTTCACTTTTTT+TGG + chr1_2:72620239-72620258 Msa0090550:intron 25.0%
!!! TTAATTGGAGCCAATTTTTT+TGG + chr1_2:72620549-72620568 Msa0090550:intron 25.0%
! CTAGCTAATAAAAATTGACA+TGG + chr1_2:72620644-72620663 Msa0090550:intron 25.0%
!! CATTTCAACTTTTGATGTTT+AGG + chr1_2:72620693-72620712 Msa0090550:intron 25.0%
! AGATTGTCTTAATAATCATC+CGG - chr1_2:72621178-72621197 None:intergenic 25.0%
!!! TTATGTTTCAGTTTTAAACC+AGG + chr1_2:72621237-72621256 Msa0090550:intron 25.0%
! TTTGGATAATAGTTAATACC+TGG - chr1_2:72621420-72621439 None:intergenic 25.0%
! ATTATAGCTGACATAATAAC+TGG + chr1_2:72621809-72621828 Msa0090550:three_prime_UTR 25.0%
! TTATAGCTGACATAATAACT+GGG + chr1_2:72621810-72621829 Msa0090550:three_prime_UTR 25.0%
! TTTTTGTGAGAATGAGTCAA+AGG + chr1_2:72617156-72617175 Msa0090550:CDS 30.0%
! TTTTGTGAGAATGAGTCAAA+GGG + chr1_2:72617157-72617176 Msa0090550:CDS 30.0%
!! ATATATAGCTTTGTTGCCAA+AGG + chr1_2:72617185-72617204 Msa0090550:CDS 30.0%
ATTGTCTAAGAGGAAATTGA+AGG - chr1_2:72617330-72617349 None:intergenic 30.0%
TTCAATTTCCTCTTAGACAA+TGG + chr1_2:72617329-72617348 Msa0090550:intron 30.0%
CTAAAAAACGCTATAATTGC+AGG - chr1_2:72617414-72617433 None:intergenic 30.0%
GAGAGATAATGAAAAAACAG+GGG + chr1_2:72617699-72617718 Msa0090550:intron 30.0%
ACAAGAAAACGTAAGATTGT+AGG - chr1_2:72617737-72617756 None:intergenic 30.0%
CATACACAACAATCCTAATA+TGG - chr1_2:72617940-72617959 None:intergenic 30.0%
GATTGTTGTGTATGCTAATA+TGG + chr1_2:72617946-72617965 Msa0090550:intron 30.0%
ATAGATGAATTCGAGTACTT+TGG + chr1_2:72618033-72618052 Msa0090550:intron 30.0%
TCTAAAAATTTGACCAAAGG+TGG + chr1_2:72618196-72618215 Msa0090550:intron 30.0%
AAAAAGTAAAACACCACCTT+TGG - chr1_2:72618212-72618231 None:intergenic 30.0%
GTAAATGTTTGATGTGGATT+CGG - chr1_2:72618334-72618353 None:intergenic 30.0%
ATATGTCACATGTGAATTTG+CGG + chr1_2:72618645-72618664 Msa0090550:intron 30.0%
!!! TTCCTTTTGTGTTTTTGGAA+CGG + chr1_2:72618931-72618950 Msa0090550:CDS 30.0%
TTTACTCATTTCTTCAGGAT+GGG - chr1_2:72619211-72619230 None:intergenic 30.0%
GATAGTTTACTCATTTCTTC+AGG - chr1_2:72619216-72619235 None:intergenic 30.0%
GAGTAAACTATCAAAGTTGA+AGG + chr1_2:72619224-72619243 Msa0090550:CDS 30.0%
! AAATGCATGAGTGTGTTATT+AGG - chr1_2:72619304-72619323 None:intergenic 30.0%
!! TTTTGATTATGCTTTCTGGT+TGG + chr1_2:72619501-72619520 Msa0090550:intron 30.0%
!! TAAGAGTGTTTAGATGTGTA+TGG + chr1_2:72619530-72619549 Msa0090550:intron 30.0%
CGATAAACAATGACATCATT+TGG + chr1_2:72619574-72619593 Msa0090550:intron 30.0%
!!! AAAGTTTTTTCCAAACTAGG+TGG - chr1_2:72619615-72619634 None:intergenic 30.0%
ACCTAGTTTGGAAAAAACTT+TGG + chr1_2:72619614-72619633 Msa0090550:intron 30.0%
!!! ACCAAAGTTTTTTCCAAACT+AGG - chr1_2:72619618-72619637 None:intergenic 30.0%
TAGTTTGGAAAAAACTTTGG+TGG + chr1_2:72619617-72619636 Msa0090550:intron 30.0%
TGGTTATGATATTCTTACCT+GGG + chr1_2:72619637-72619656 Msa0090550:intron 30.0%
!!! GGTTTTAAGCTAAAGTATAC+TGG - chr1_2:72619698-72619717 None:intergenic 30.0%
! GTATACTTTAGCTTAAAACC+AGG + chr1_2:72619698-72619717 Msa0090550:intron 30.0%
ATATTAGATAGAAGGTAGTC+TGG + chr1_2:72619766-72619785 Msa0090550:intron 30.0%
!! CCTAAATCATTTTTACGGTT+TGG - chr1_2:72619834-72619853 None:intergenic 30.0%
CCAAACCGTAAAAATGATTT+AGG + chr1_2:72619831-72619850 Msa0090550:intron 30.0%
! ATATAGAAGCTTTTCCCATT+AGG - chr1_2:72619925-72619944 None:intergenic 30.0%
TCATTTCAAGAAGTTACGAA+AGG + chr1_2:72620000-72620019 Msa0090550:intron 30.0%
!!! CATTTTCTAAGGCATTGTTT+GGG + chr1_2:72620164-72620183 Msa0090550:intron 30.0%
AGAGAATCCTTCTAATTTGA+AGG - chr1_2:72620385-72620404 None:intergenic 30.0%
! AAAAATAGAGGACTTTGAGA+GGG - chr1_2:72620441-72620460 None:intergenic 30.0%
AAAAAATAGAGGACTTTGAG+AGG - chr1_2:72620442-72620461 None:intergenic 30.0%
ACAATTTCAAACATAGCTAG+AGG - chr1_2:72620824-72620843 None:intergenic 30.0%
AAGCAAATCTTATAAAGCCA+TGG - chr1_2:72620926-72620945 None:intergenic 30.0%
!! ATGGCTTTATAAGATTTGCT+TGG + chr1_2:72620925-72620944 Msa0090550:intron 30.0%
!! TGGCTTTATAAGATTTGCTT+GGG + chr1_2:72620926-72620945 Msa0090550:intron 30.0%
! AAATGTTTTCTTCTGATTCC+TGG - chr1_2:72621258-72621277 None:intergenic 30.0%
GTGCTTTATATTCAGAAACA+TGG - chr1_2:72621305-72621324 None:intergenic 30.0%
!! TGAACTTTTGGTGGATAAAA+CGG + chr1_2:72621381-72621400 Msa0090550:CDS 30.0%
AACAGTATTGTTTCAGAGTT+CGG - chr1_2:72621454-72621473 None:intergenic 30.0%
! ATATTATGGGTTATTGCTTG+TGG + chr1_2:72621609-72621628 Msa0090550:CDS 30.0%
! TATTATGGGTTATTGCTTGT+GGG + chr1_2:72621610-72621629 Msa0090550:CDS 30.0%
TTCCACTTGTACATTGAATT+TGG + chr1_2:72621710-72621729 Msa0090550:three_prime_UTR 30.0%
!! AATTTGGTGCATGGAATTTA+TGG + chr1_2:72621726-72621745 Msa0090550:three_prime_UTR 30.0%
TATAGCTGACATAATAACTG+GGG + chr1_2:72621811-72621830 Msa0090550:three_prime_UTR 30.0%
TTTGTGAGAATGAGTCAAAG+GGG + chr1_2:72617158-72617177 Msa0090550:CDS 35.0%
TGCTAAAACAACAGTTCCTT+TGG - chr1_2:72617204-72617223 None:intergenic 35.0%
GCAGAACATACTCAATATAC+TGG + chr1_2:72617221-72617240 Msa0090550:CDS 35.0%
!! ATTCAAGCATTGAACAGCAA+TGG - chr1_2:72617258-72617277 None:intergenic 35.0%
!! GTGTATTTGGTGCTATTTGA+AGG - chr1_2:72617287-72617306 None:intergenic 35.0%
! TTCCTCTTAGACAATGGATT+CGG + chr1_2:72617335-72617354 Msa0090550:intron 35.0%
CAACAGTCTTCAAATTTGCA+GGG - chr1_2:72617473-72617492 None:intergenic 35.0%
!! TTTAGTTCTGTCGTCATACA+CGG + chr1_2:72617495-72617514 Msa0090550:intron 35.0%
TCACATGGCATGATTATATG+GGG - chr1_2:72617521-72617540 None:intergenic 35.0%
GTCACATGGCATGATTATAT+GGG - chr1_2:72617522-72617541 None:intergenic 35.0%
! AAGAAATTATCGATTGAGCC+CGG - chr1_2:72617598-72617617 None:intergenic 35.0%
AGATAATGAAAAAACAGGGG+AGG + chr1_2:72617702-72617721 Msa0090550:intron 35.0%
!!! TGCAACACTAATTTTTCAGG+GGG - chr1_2:72617766-72617785 None:intergenic 35.0%
!! GTGCAACACTAATTTTTCAG+GGG - chr1_2:72617767-72617786 None:intergenic 35.0%
! GGTGCAACACTAATTTTTCA+GGG - chr1_2:72617768-72617787 None:intergenic 35.0%
! AGGTGCAACACTAATTTTTC+AGG - chr1_2:72617769-72617788 None:intergenic 35.0%
! AAAAAGAGAAACAGAAGTGC+AGG + chr1_2:72617873-72617892 Msa0090550:intron 35.0%
CTTTGGACACTTTAGGTAAA+AGG + chr1_2:72618050-72618069 Msa0090550:intron 35.0%
ATATCAAAGCCAACTCAATG+AGG - chr1_2:72618461-72618480 None:intergenic 35.0%
!! TGAGTTGGCTTTGATATTGT+CGG + chr1_2:72618464-72618483 Msa0090550:intron 35.0%
TTGATTCATCAGCAACAACA+AGG - chr1_2:72618899-72618918 None:intergenic 35.0%
GTTGTTGCTGATGAATCAAT+TGG + chr1_2:72618900-72618919 Msa0090550:CDS 35.0%
TTGCTGATGAATCAATTGGA+AGG + chr1_2:72618904-72618923 Msa0090550:CDS 35.0%
! GAGTGTTCCTTTTGTGTTTT+TGG + chr1_2:72618926-72618945 Msa0090550:CDS 35.0%
!!! TCCTTTTGTGTTTTTGGAAC+GGG + chr1_2:72618932-72618951 Msa0090550:CDS 35.0%
TCTTGATAGAGAATTTGGGT+TGG + chr1_2:72619073-72619092 Msa0090550:intron 35.0%
!!! GTATTTTGATCTCGTTATGC+AGG + chr1_2:72619151-72619170 Msa0090550:intron 35.0%
GTTTACTCATTTCTTCAGGA+TGG - chr1_2:72619212-72619231 None:intergenic 35.0%
!! ATACTACCTAGTCTTATGTC+TGG + chr1_2:72619388-72619407 Msa0090550:intron 35.0%
GTGGTTATGATATTCTTACC+TGG + chr1_2:72619636-72619655 Msa0090550:intron 35.0%
GGTTATGATATTCTTACCTG+GGG + chr1_2:72619638-72619657 Msa0090550:intron 35.0%
GTTATGATATTCTTACCTGG+GGG + chr1_2:72619639-72619658 Msa0090550:intron 35.0%
TTATGATATTCTTACCTGGG+GGG + chr1_2:72619640-72619659 Msa0090550:intron 35.0%
CTTATGATACTCTATCGTCT+TGG - chr1_2:72619740-72619759 None:intergenic 35.0%
! CAAGACGATAGAGTATCATA+AGG + chr1_2:72619738-72619757 Msa0090550:intron 35.0%
AAGATAGGCCAAGAATTTAC+AGG + chr1_2:72619800-72619819 Msa0090550:intron 35.0%
GGTTAGTGACATGAATCAAA+TGG - chr1_2:72619899-72619918 None:intergenic 35.0%
!!! GCATTTTCTAAGGCATTGTT+TGG + chr1_2:72620163-72620182 Msa0090550:intron 35.0%
AATTTGAAGGAGCTCGTATA+GGG - chr1_2:72620372-72620391 None:intergenic 35.0%
TAATTTGAAGGAGCTCGTAT+AGG - chr1_2:72620373-72620392 None:intergenic 35.0%
! AAAATAGAGGACTTTGAGAG+GGG - chr1_2:72620440-72620459 None:intergenic 35.0%
AGACGGAACTTTCTGTTAAT+TGG + chr1_2:72620534-72620553 Msa0090550:intron 35.0%
!!! TTGGAGCCAATTTTTTTGGA+AGG + chr1_2:72620553-72620572 Msa0090550:intron 35.0%
! GATGTTTAGGCATACTGATT+AGG + chr1_2:72620706-72620725 Msa0090550:intron 35.0%
! TAGGCATACTGATTAGGATT+TGG + chr1_2:72620712-72620731 Msa0090550:intron 35.0%
ATATCACTGGATCAACATGT+AGG + chr1_2:72620743-72620762 Msa0090550:intron 35.0%
ATCACAGTTAAAACCTCTGT+TGG - chr1_2:72621070-72621089 None:intergenic 35.0%
TTAAATTGGGATACTGCAGA+GGG + chr1_2:72621104-72621123 Msa0090550:intron 35.0%
AGTTCGGAAATGTTTGGATT+TGG - chr1_2:72621438-72621457 None:intergenic 35.0%
TTTCAGAGTTCGGAAATGTT+TGG - chr1_2:72621444-72621463 None:intergenic 35.0%
! ATTATGGGTTATTGCTTGTG+GGG + chr1_2:72621611-72621630 Msa0090550:CDS 35.0%
ATTCTGTATTTGGGCACATA+AGG + chr1_2:72621667-72621686 Msa0090550:three_prime_UTR 35.0%
TTCTGTATTTGGGCACATAA+GGG + chr1_2:72621668-72621687 Msa0090550:three_prime_UTR 35.0%
CACCAAATTCAATGTACAAG+TGG - chr1_2:72621715-72621734 None:intergenic 35.0%
!! TGTACATTGAATTTGGTGCA+TGG + chr1_2:72621717-72621736 Msa0090550:three_prime_UTR 35.0%
TACCGAATCCATTGTCTAAG+AGG - chr1_2:72617340-72617359 None:intergenic 40.0%
GCAACAGTCTTCAAATTTGC+AGG - chr1_2:72617474-72617493 None:intergenic 40.0%
CGTCACATGGCATGATTATA+TGG - chr1_2:72617523-72617542 None:intergenic 40.0%
! AGAAATTATCGATTGAGCCC+GGG - chr1_2:72617597-72617616 None:intergenic 40.0%
! CAAGTGTGTTAATCGGCTTT+GGG - chr1_2:72617635-72617654 None:intergenic 40.0%
! TCAAGTGTGTTAATCGGCTT+TGG - chr1_2:72617636-72617655 None:intergenic 40.0%
TGTGTATGCTAATATGGGCT+TGG + chr1_2:72617952-72617971 Msa0090550:intron 40.0%
GTGTATGCTAATATGGGCTT+GGG + chr1_2:72617953-72617972 Msa0090550:intron 40.0%
! TGGGCCACATAACATACTTT+TGG + chr1_2:72617979-72617998 Msa0090550:intron 40.0%
TCGAGTACTTTGGACACTTT+AGG + chr1_2:72618043-72618062 Msa0090550:intron 40.0%
! TGGGGGTATACATATTCAGT+AGG - chr1_2:72618433-72618452 None:intergenic 40.0%
!! AACTCAATGAGGTTTGTTGG+GGG - chr1_2:72618450-72618469 None:intergenic 40.0%
!! CAACTCAATGAGGTTTGTTG+GGG - chr1_2:72618451-72618470 None:intergenic 40.0%
! CCAACTCAATGAGGTTTGTT+GGG - chr1_2:72618452-72618471 None:intergenic 40.0%
AGACCCTAAATCAGCTCATT+GGG - chr1_2:72618719-72618738 None:intergenic 40.0%
TAGACCCTAAATCAGCTCAT+TGG - chr1_2:72618720-72618739 None:intergenic 40.0%
ATTTACTAGATCTGCTGCCA+TGG + chr1_2:72618836-72618855 Msa0090550:intron 40.0%
CACATGTTATGTAACAGCCA+TGG - chr1_2:72618856-72618875 None:intergenic 40.0%
ACCCGTTCCAAAAACACAAA+AGG - chr1_2:72618936-72618955 None:intergenic 40.0%
GATGACTTTAACCAGCGTTA+TGG + chr1_2:72618960-72618979 Msa0090550:CDS 40.0%
TAATACTAGCACCATAACGC+TGG - chr1_2:72618974-72618993 None:intergenic 40.0%
ATCATCGTCCTCATCATCAT+CGG - chr1_2:72619021-72619040 None:intergenic 40.0%
TTATGCAGGCCAAGTCTTAA+GGG + chr1_2:72619165-72619184 Msa0090550:intron 40.0%
GTTGAAGGCTCAAATAACTG+AGG + chr1_2:72619239-72619258 Msa0090550:CDS 40.0%
GCTCAAATAACTGAGGTCAA+GGG + chr1_2:72619246-72619265 Msa0090550:CDS 40.0%
CTCAAATAACTGAGGTCAAG+GGG + chr1_2:72619247-72619266 Msa0090550:CDS 40.0%
! ATGTTTTCAGCGCTAATGCT+TGG + chr1_2:72619360-72619379 Msa0090550:intron 40.0%
! ACTAGGTGGAGTTGATTAGA+TGG - chr1_2:72619601-72619620 None:intergenic 40.0%
CTAATCAACTCCACCTAGTT+TGG + chr1_2:72619602-72619621 Msa0090550:intron 40.0%
CGCTTGATCCTGTAAATTCT+TGG - chr1_2:72619811-72619830 None:intergenic 40.0%
! AGAAGCTTTTCCCATTAGGT+CGG - chr1_2:72619921-72619940 None:intergenic 40.0%
AATCTTCATCTAGTCCCACT+CGG - chr1_2:72620121-72620140 None:intergenic 40.0%
GCATGCATATAATGCTCAAC+TGG - chr1_2:72620145-72620164 None:intergenic 40.0%
!! TAAGGCATTGTTTGGGAGTT+TGG + chr1_2:72620171-72620190 Msa0090550:intron 40.0%
ATTTGAAGGAGCTCGTATAG+GGG - chr1_2:72620371-72620390 None:intergenic 40.0%
ACGAGCTCCTTCAAATTAGA+AGG + chr1_2:72620375-72620394 Msa0090550:intron 40.0%
GGAGCAAGTGGAAAAAATAG+AGG - chr1_2:72620453-72620472 None:intergenic 40.0%
!! TCTCTTTAGGCTTTGTTTGC+GGG - chr1_2:72620517-72620536 None:intergenic 40.0%
!! GTCTCTTTAGGCTTTGTTTG+CGG - chr1_2:72620518-72620537 None:intergenic 40.0%
GCAAACAAAGCCTAAAGAGA+CGG + chr1_2:72620517-72620536 Msa0090550:intron 40.0%
ACAGAAAGTTCCGTCTCTTT+AGG - chr1_2:72620530-72620549 None:intergenic 40.0%
TTTGGATCCTCTCATATCAC+TGG + chr1_2:72620730-72620749 Msa0090550:intron 40.0%
TGTTGATCCAGTGATATGAG+AGG - chr1_2:72620740-72620759 None:intergenic 40.0%
! AAAGTATCCAGCCATGATGA+AGG + chr1_2:72620797-72620816 Msa0090550:intron 40.0%
AATCTTATAAAGCCATGGCC+TGG - chr1_2:72620921-72620940 None:intergenic 40.0%
GTTAAATTGGGATACTGCAG+AGG + chr1_2:72621103-72621122 Msa0090550:intron 40.0%
!! ATTTGCACTCGTCGTTTTGA+AGG + chr1_2:72621336-72621355 Msa0090550:intron 40.0%
!!! TTTTGAAGGTGTTGGATCGT+GGG + chr1_2:72621350-72621369 Msa0090550:intron 40.0%
! TGGGGAGAAGATTGAACTTT+TGG + chr1_2:72621369-72621388 Msa0090550:CDS 40.0%
! GGAGAAGATTGAACTTTTGG+TGG + chr1_2:72621372-72621391 Msa0090550:CDS 40.0%
GAATCTCCAAATGAAGCTGA+TGG + chr1_2:72621557-72621576 Msa0090550:CDS 40.0%
! TTATGGGTTATTGCTTGTGG+GGG + chr1_2:72621612-72621631 Msa0090550:CDS 40.0%
GTGTGTGAGAGAGAAACTCA+AGG - chr1_2:72617789-72617808 None:intergenic 45.0%
GTGCAGGACAAAGAAGAAGA+AGG + chr1_2:72617889-72617908 Msa0090550:intron 45.0%
GGACAAAGAAGAAGAAGGTG+TGG + chr1_2:72617894-72617913 Msa0090550:intron 45.0%
CTAATATGGGCTTGGGTCTT+GGG + chr1_2:72617960-72617979 Msa0090550:intron 45.0%
TTCAATTCAGTGGCGTATCC+AGG - chr1_2:72618390-72618409 None:intergenic 45.0%
TCGCGGTACATTCAATTCAG+TGG - chr1_2:72618400-72618419 None:intergenic 45.0%
! CAGTAGGTTATTTGGGTTCG+CGG - chr1_2:72618417-72618436 None:intergenic 45.0%
CCCAACAAACCTCATTGAGT+TGG + chr1_2:72618449-72618468 Msa0090550:intron 45.0%
GCCAACTCAATGAGGTTTGT+TGG - chr1_2:72618453-72618472 None:intergenic 45.0%
!!! TTGCGGTAATTTTTTCGCCC+AGG + chr1_2:72618662-72618681 Msa0090550:intron 45.0%
! CCAGGATTTTCATAGAGCCT+GGG - chr1_2:72618682-72618701 None:intergenic 45.0%
! TGGCCCAATGAGCTGATTTA+GGG + chr1_2:72618713-72618732 Msa0090550:intron 45.0%
!!! TGTGTTTTTGGAACGGGTGA+AGG + chr1_2:72618938-72618957 Msa0090550:CDS 45.0%
GTTATGCAGGCCAAGTCTTA+AGG + chr1_2:72619164-72619183 Msa0090550:intron 45.0%
TATGCAGGCCAAGTCTTAAG+GGG + chr1_2:72619166-72619185 Msa0090550:intron 45.0%
TGCATATGCCCCTTAAGACT+TGG - chr1_2:72619177-72619196 None:intergenic 45.0%
GGCTCAAATAACTGAGGTCA+AGG + chr1_2:72619245-72619264 Msa0090550:CDS 45.0%
TGAGGTCAAGGGGATAATGA+TGG + chr1_2:72619257-72619276 Msa0090550:CDS 45.0%
GTGCATCCAGACATAAGACT+AGG - chr1_2:72619397-72619416 None:intergenic 45.0%
GAAGGTAGTCTGGAAGTTAG+CGG + chr1_2:72619776-72619795 Msa0090550:intron 45.0%
CTGGAAGTTAGCGGTAAGAT+AGG + chr1_2:72619785-72619804 Msa0090550:intron 45.0%
ATGTCACTAACCCGACCTAA+TGG + chr1_2:72619907-72619926 Msa0090550:intron 45.0%
TGTCACTAACCCGACCTAAT+GGG + chr1_2:72619908-72619927 Msa0090550:intron 45.0%
! GAAGCTTTTCCCATTAGGTC+GGG - chr1_2:72619920-72619939 None:intergenic 45.0%
ATCTTCATCTAGTCCCACTC+GGG - chr1_2:72620120-72620139 None:intergenic 45.0%
GCATTGTTTGGGAGTTTGGA+GGG + chr1_2:72620175-72620194 Msa0090550:intron 45.0%
CATTGTTTGGGAGTTTGGAG+GGG + chr1_2:72620176-72620195 Msa0090550:intron 45.0%
TGTGGGGGTGAAAACGTATA+GGG + chr1_2:72620209-72620228 Msa0090550:intron 45.0%
TTTGAAGGAGCTCGTATAGG+GGG - chr1_2:72620370-72620389 None:intergenic 45.0%
GAGGGATTTGGGAAAAAGGA+AGG - chr1_2:72620474-72620493 None:intergenic 45.0%
!! TTAGGCTTTGTTTGCGGGTT+TGG - chr1_2:72620512-72620531 None:intergenic 45.0%
TAGCTAGAGGACCTTCATCA+TGG - chr1_2:72620811-72620830 None:intergenic 45.0%
TCTGACAGTTAGACCAACAG+AGG + chr1_2:72621054-72621073 Msa0090550:intron 45.0%
!!! ACTCGTCGTTTTGAAGGTGT+TGG + chr1_2:72621342-72621361 Msa0090550:intron 45.0%
!!! GTTTTGAAGGTGTTGGATCG+TGG + chr1_2:72621349-72621368 Msa0090550:intron 45.0%
!! TTTGAAGGTGTTGGATCGTG+GGG + chr1_2:72621351-72621370 Msa0090550:intron 45.0%
AACGGAAAACTTGCAGTTCC+AGG + chr1_2:72621399-72621418 Msa0090550:CDS 45.0%
TCTCCAAATGAAGCTGATGG+TGG + chr1_2:72621560-72621579 Msa0090550:CDS 45.0%
CTCCAAATGAAGCTGATGGT+GGG + chr1_2:72621561-72621580 Msa0090550:CDS 45.0%
TGAAGCTTGTGCTATACTGC+TGG + chr1_2:72621768-72621787 Msa0090550:three_prime_UTR 45.0%
AGCTGACATAATAACTGGGG+TGG + chr1_2:72621814-72621833 Msa0090550:three_prime_UTR 45.0%
!! TTTACAATAATAAAAATTAA+TGG + chr1_2:72618252-72618271 Msa0090550:intron 5.0%
!! TTAAAATTATTAAAAATAGT+AGG + chr1_2:72618295-72618314 Msa0090550:intron 5.0%
GCTAATATGGGCTTGGGTCT+TGG + chr1_2:72617959-72617978 Msa0090550:intron 50.0%
TATTTCTCTACTGCACCCCC+TGG + chr1_2:72618356-72618375 Msa0090550:intron 50.0%
CCCAGGCTCTATGAAAATCC+TGG + chr1_2:72618679-72618698 Msa0090550:intron 50.0%
! GCCAGGATTTTCATAGAGCC+TGG - chr1_2:72618683-72618702 None:intergenic 50.0%
! GTGGCCCAATGAGCTGATTT+AGG + chr1_2:72618712-72618731 Msa0090550:intron 50.0%
CATCATCATCGGCAAGTGGA+TGG - chr1_2:72619010-72619029 None:intergenic 50.0%
! TCCACTTGCCGATGATGATG+AGG + chr1_2:72619010-72619029 Msa0090550:CDS 50.0%
TCCTCATCATCATCGGCAAG+TGG - chr1_2:72619014-72619033 None:intergenic 50.0%
!! AACCAGGAAAGCACCTGTTG+TGG + chr1_2:72619714-72619733 Msa0090550:intron 50.0%
TCTATCGTCTTGGCCACAAC+AGG - chr1_2:72619730-72619749 None:intergenic 50.0%
ACTCGGGCAATTCAATGGAG+TGG - chr1_2:72620104-72620123 None:intergenic 50.0%
ACTCCATTGAATTGCCCGAG+TGG + chr1_2:72620103-72620122 Msa0090550:intron 50.0%
CTCCATTGAATTGCCCGAGT+GGG + chr1_2:72620104-72620123 Msa0090550:intron 50.0%
GGCATTGTTTGGGAGTTTGG+AGG + chr1_2:72620174-72620193 Msa0090550:intron 50.0%
CTGTGGGGGTGAAAACGTAT+AGG + chr1_2:72620208-72620227 Msa0090550:intron 50.0%
! TAGAGGACTTTGAGAGGGGA+GGG - chr1_2:72620436-72620455 None:intergenic 50.0%
! ATAGAGGACTTTGAGAGGGG+AGG - chr1_2:72620437-72620456 None:intergenic 50.0%
GGGAAAAAGGAAGGAGCAAG+TGG - chr1_2:72620465-72620484 None:intergenic 50.0%
TTTGCGGGTTTGGAAGGCAA+TGG - chr1_2:72620502-72620521 None:intergenic 50.0%
!! GCTTTGTTTGCGGGTTTGGA+AGG - chr1_2:72620508-72620527 None:intergenic 50.0%
TAGAGGACCTTCATCATGGC+TGG - chr1_2:72620807-72620826 None:intergenic 50.0%
GAGACACTAGCACATGGATC+TGG - chr1_2:72620896-72620915 None:intergenic 50.0%
CTGGAAGAGACACTAGCACA+TGG - chr1_2:72620902-72620921 None:intergenic 50.0%
CATGTGCTAGTGTCTCTTCC+AGG + chr1_2:72620900-72620919 Msa0090550:intron 50.0%
TTTAGGCTGACAGCTTCCAG+AGG + chr1_2:72621499-72621518 Msa0090550:intron 50.0%
GGCAGCTAAGAAGGAAGATG+TGG + chr1_2:72621529-72621548 Msa0090550:CDS 50.0%
CTCCCACCATCAGCTTCATT+TGG - chr1_2:72621566-72621585 None:intergenic 50.0%
!! CAAATGAAGCTGATGGTGGG+AGG + chr1_2:72621564-72621583 Msa0090550:CDS 50.0%
TCATGCCATGTGACGCCACA+TGG + chr1_2:72617528-72617547 Msa0090550:intron 55.0%
! GAAGAAGAAGGTGTGGCGTC+TGG + chr1_2:72617901-72617920 Msa0090550:intron 55.0%
ATCAGCTCATTGGGCCACAG+TGG - chr1_2:72618710-72618729 None:intergenic 55.0%
ATTCTTACCTGGGGGGACTC+AGG + chr1_2:72619647-72619666 Msa0090550:intron 55.0%
GTCCCACTCGGGCAATTCAA+TGG - chr1_2:72620109-72620128 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+TGG + chr1_2:72620181-72620200 Msa0090550:intron 55.0%
AAGGAGCTCGTATAGGGGGA+GGG - chr1_2:72620366-72620385 None:intergenic 55.0%
! CTTTGAGAGGGGAGGGCTTT+GGG - chr1_2:72620429-72620448 None:intergenic 55.0%
! ACTTTGAGAGGGGAGGGCTT+TGG - chr1_2:72620430-72620449 None:intergenic 55.0%
GGGGGAGGGATTTGGGAAAA+AGG - chr1_2:72620478-72620497 None:intergenic 55.0%
CAATGGAGGGGGAGGGATTT+GGG - chr1_2:72620485-72620504 None:intergenic 55.0%
GGTTTGGAAGGCAATGGAGG+GGG - chr1_2:72620496-72620515 None:intergenic 55.0%
GGGTTTGGAAGGCAATGGAG+GGG - chr1_2:72620497-72620516 None:intergenic 55.0%
CGGGTTTGGAAGGCAATGGA+GGG - chr1_2:72620498-72620517 None:intergenic 55.0%
CTAGTGTCTCTTCCAGGCCA+TGG + chr1_2:72620906-72620925 Msa0090550:intron 55.0%
!! ATGAAGCTGATGGTGGGAGG+AGG + chr1_2:72621567-72621586 Msa0090550:CDS 55.0%
TTGGGCCATGTGGCGTCACA+TGG - chr1_2:72617536-72617555 None:intergenic 60.0%
GCGGTAGATCCGCCACTGTT+GGG - chr1_2:72617554-72617573 None:intergenic 60.0%
TATCCAGGACCCTGGTCCAG+GGG - chr1_2:72618375-72618394 None:intergenic 60.0%
GTATCCAGGACCCTGGTCCA+GGG - chr1_2:72618376-72618395 None:intergenic 60.0%
AAATCCTGGCTCCGCCACTG+TGG + chr1_2:72618693-72618712 Msa0090550:intron 60.0%
AGCTCATTGGGCCACAGTGG+CGG - chr1_2:72618707-72618726 None:intergenic 60.0%
GGCCACAACAGGTGCTTTCC+TGG - chr1_2:72619719-72619738 None:intergenic 60.0%
GGAGTTTGGAGGGGAGTGGA+GGG + chr1_2:72620185-72620204 Msa0090550:intron 60.0%
GAAGGAGCTCGTATAGGGGG+AGG - chr1_2:72620367-72620386 None:intergenic 60.0%
GCAATGGAGGGGGAGGGATT+TGG - chr1_2:72620486-72620505 None:intergenic 60.0%
TGGAAGGCAATGGAGGGGGA+GGG - chr1_2:72620492-72620511 None:intergenic 60.0%
TTGGAAGGCAATGGAGGGGG+AGG - chr1_2:72620493-72620512 None:intergenic 60.0%
GCGGGTTTGGAAGGCAATGG+AGG - chr1_2:72620499-72620518 None:intergenic 60.0%
GCTGACAGCTTCCAGAGGCA+GGG + chr1_2:72621504-72621523 Msa0090550:CDS 60.0%
GACGCCACATGGCCCAACAG+TGG + chr1_2:72617539-72617558 Msa0090550:intron 65.0%
GCCACATGGCCCAACAGTGG+CGG + chr1_2:72617542-72617561 Msa0090550:intron 65.0%
TCCGCCACTGTTGGGCCATG+TGG - chr1_2:72617546-72617565 None:intergenic 65.0%
GGCGGTAGATCCGCCACTGT+TGG - chr1_2:72617555-72617574 None:intergenic 65.0%
!! ACAGTGGCGGATCTACCGCC+CGG + chr1_2:72617555-72617574 Msa0090550:intron 65.0%
TCTACTGCACCCCCTGGACC+AGG + chr1_2:72618362-72618381 Msa0090550:intron 65.0%
CTACTGCACCCCCTGGACCA+GGG + chr1_2:72618363-72618382 Msa0090550:intron 65.0%
ATCCAGGACCCTGGTCCAGG+GGG - chr1_2:72618374-72618393 None:intergenic 65.0%
CGTATCCAGGACCCTGGTCC+AGG - chr1_2:72618377-72618396 None:intergenic 65.0%
CAGTGGCGTATCCAGGACCC+TGG - chr1_2:72618383-72618402 None:intergenic 65.0%
AGTGCTTCCTGAGTCCCCCC+AGG - chr1_2:72619657-72619676 None:intergenic 65.0%
GGGAGTTTGGAGGGGAGTGG+AGG + chr1_2:72620184-72620203 Msa0090550:intron 65.0%
!! TGAGAGGGGAGGGCTTTGGG+CGG - chr1_2:72620426-72620445 None:intergenic 65.0%
GGCTGACAGCTTCCAGAGGC+AGG + chr1_2:72621503-72621522 Msa0090550:intron 65.0%
ACAGCTTCCAGAGGCAGGGC+AGG + chr1_2:72621508-72621527 Msa0090550:CDS 65.0%
TTAGCTGCCTGCCCTGCCTC+TGG - chr1_2:72621518-72621537 None:intergenic 65.0%
GGCAGGGCAGGCAGCTAAGA+AGG + chr1_2:72621520-72621539 Msa0090550:CDS 65.0%
ATTGAGCCCGGGCGAGTGCC+CGG - chr1_2:72617586-72617605 None:intergenic 70.0%
TGGAGGGGAGTGGAGGGCTG+TGG + chr1_2:72620191-72620210 Msa0090550:intron 70.0%
GGAGGGGAGTGGAGGGCTGT+GGG + chr1_2:72620192-72620211 Msa0090550:intron 70.0%
GAGGGGAGTGGAGGGCTGTG+GGG + chr1_2:72620193-72620212 Msa0090550:intron 70.0%
AGGGGAGTGGAGGGCTGTGG+GGG + chr1_2:72620194-72620213 Msa0090550:intron 70.0%
!! GAGAGGGGAGGGCTTTGGGC+GGG - chr1_2:72620425-72620444 None:intergenic 70.0%
GATCTACCGCCCGGCGACCC+CGG + chr1_2:72617564-72617583 Msa0090550:intron 75.0%
ATCTACCGCCCGGCGACCCC+GGG + chr1_2:72617565-72617584 Msa0090550:intron 75.0%
TTGAGCCCGGGCGAGTGCCC+GGG - chr1_2:72617585-72617604 None:intergenic 75.0%
CACCCCCTGGACCAGGGTCC+TGG + chr1_2:72618369-72618388 Msa0090550:intron 75.0%
! TGGGCCACAGTGGCGGAGCC+AGG - chr1_2:72618700-72618719 None:intergenic 75.0%
! TGAGCCCGGGCGAGTGCCCG+GGG - chr1_2:72617584-72617603 None:intergenic 80.0%
! GAGTGCCCGGGGTCGCCGGG+CGG - chr1_2:72617573-72617592 None:intergenic 85.0%
! GGCGAGTGCCCGGGGTCGCC+GGG - chr1_2:72617576-72617595 None:intergenic 85.0%
! GGGCGAGTGCCCGGGGTCGC+CGG - chr1_2:72617577-72617596 None:intergenic 85.0%
! GGCGACCCCGGGCACTCGCC+CGG + chr1_2:72617576-72617595 Msa0090550:intron 85.0%
! GCGACCCCGGGCACTCGCCC+GGG + chr1_2:72617577-72617596 Msa0090550:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72617152 72621865 72617152 ID=Msa0090550;Name=Msa0090550
chr1_2 mRNA 72617152 72621865 72617152 ID=Msa0090550-mRNA-1;Parent=Msa0090550;Name=Msa0090550-mRNA-1;_AED=0.10;_eAED=0.12;_QI=0|0.75|0.8|1|0.75|0.8|5|218|231
chr1_2 exon 72617152 72617320 72617152 ID=Msa0090550-mRNA-1:exon:25221;Parent=Msa0090550-mRNA-1
chr1_2 exon 72618892 72619090 72618892 ID=Msa0090550-mRNA-1:exon:25222;Parent=Msa0090550-mRNA-1
chr1_2 exon 72619173 72619293 72619173 ID=Msa0090550-mRNA-1:exon:25223;Parent=Msa0090550-mRNA-1
chr1_2 exon 72621358 72621420 72621358 ID=Msa0090550-mRNA-1:exon:25224;Parent=Msa0090550-mRNA-1
chr1_2 exon 72621504 72621865 72621504 ID=Msa0090550-mRNA-1:exon:25225;Parent=Msa0090550-mRNA-1
chr1_2 CDS 72617152 72617320 72617152 ID=Msa0090550-mRNA-1:cds;Parent=Msa0090550-mRNA-1
chr1_2 CDS 72618892 72619090 72618892 ID=Msa0090550-mRNA-1:cds;Parent=Msa0090550-mRNA-1
chr1_2 CDS 72619173 72619293 72619173 ID=Msa0090550-mRNA-1:cds;Parent=Msa0090550-mRNA-1
chr1_2 CDS 72621358 72621420 72621358 ID=Msa0090550-mRNA-1:cds;Parent=Msa0090550-mRNA-1
chr1_2 CDS 72621504 72621647 72621504 ID=Msa0090550-mRNA-1:cds;Parent=Msa0090550-mRNA-1
chr1_2 three_prime_UTR 72621648 72621865 72621648 ID=Msa0090550-mRNA-1:three_prime_utr;Parent=Msa0090550-mRNA-1
Gene Sequence

>Msa0090550

GTAGTTTTTGTGAGAATGAGTCAAAGGGGTTTGATATATAGCTTTGTTGCCAAAGGAACTGTTGTTTTAGCAGAACATACTCAATATACTGGAAATTTCAGTACCATTGCTGTTCAATGCTTGAATAAGCTTCCTTCAAATAGCACCAAATACACTTATTCTTGTGATGTTTTCCTTGTTGTTGCTGATGAATCAATTGGAAGGAGTGTTCCTTTTGTGTTTTTGGAACGGGTGAAGGATGACTTTAACCAGCGTTATGGTGCTAGTATTAAGAATGCAAGCGACCATCCACTTGCCGATGATGATGAGGACGATGATTTGTTTGAAGATAGATTTAGCATTGCATACAATCTTGATAGAGAATTTGGGCCAAGTCTTAAGGGGCATATGCAGTATTGTTTGACCCATCCTGAAGAAATGAGTAAACTATCAAAGTTGAAGGCTCAAATAACTGAGGTCAAGGGGATAATGATGGATAATATTGAGAAGGTGTTGGATCGTGGGGAGAAGATTGAACTTTTGGTGGATAAAACGGAAAACTTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAGGGCAGGCAGCTAAGAAGGAAGATGTGGCTGCAGAATCTCCAAATGAAGCTGATGGTGGGAGGAGGAATCCTTATCTTAGTTATAATATTATGGGTTATTGCTTGTGGGGGTTTCAAATGTTGA

Protein sequence

>Msa0090550

VVFVRMSQRGLIYSFVAKGTVVLAEHTQYTGNFSTIAVQCLNKLPSNSTKYTYSCDVFLVVADESIGRSVPFVFLERVKDDFNQRYGASIKNASDHPLADDDEDDDLFEDRFSIAYNLDREFGPSLKGHMQYCLTHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQNLQMKLMVGGGILILVIILWVIACGGFKC*