AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306340 MtrunA17_Chr8g0387211 97.208 573 16 0 1 573 1 573 0.0 1154
Msa1306340 MtrunA17_Chr4g0048391 83.559 590 76 3 1 573 3 588 0.0 1011
Msa1306340 MtrunA17_Chr1g0196061 52.807 570 260 2 9 573 16 581 0.0 637
Msa1306340 MtrunA17_Chr7g0251831 55.148 573 242 5 9 573 6 571 0.0 637
Msa1306340 MtrunA17_Chr5g0427061 49.825 572 272 6 9 573 53 616 0.0 547
Msa1306340 MtrunA17_Chr3g0133241 49.303 574 275 6 11 573 25 593 0.0 545
Msa1306340 MtrunA17_Chr5g0436511 32.657 591 357 15 6 573 10 582 2.75e-94 300
Msa1306340 MtrunA17_Chr3g0113151 30.252 595 373 11 6 573 14 593 7.96e-80 262
Msa1306340 MtrunA17_Chr8g0364131 29.038 551 318 15 31 567 9 500 2.70e-59 205
Msa1306340 MtrunA17_Chr5g0439771 51.456 103 45 1 35 132 17 119 1.75e-28 110
Msa1306340 MtrunA17_Chr2g0286991 22.711 546 324 14 9 536 13 478 1.16e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306340 AT3G62980.1 55.614 570 244 2 9 573 11 576 0.0 632
Msa1306340 AT1G12820.1 52.405 582 250 5 9 573 6 577 0.0 620
Msa1306340 AT3G26810.1 53.913 575 250 5 9 573 6 575 0.0 619
Msa1306340 AT4G03190.1 53.147 572 260 3 6 573 4 571 0.0 613
Msa1306340 AT4G24390.2 49.739 575 272 6 9 573 56 623 0.0 565
Msa1306340 AT4G24390.1 49.739 575 272 6 9 573 56 623 0.0 565
Msa1306340 AT5G49980.1 49.209 569 280 5 9 573 56 619 0.0 548
Msa1306340 AT2G39940.1 31.472 591 369 12 4 573 13 588 2.45e-98 311
Msa1306340 AT4G15475.1 23.339 557 323 22 9 493 13 537 3.91e-21 97.8
Msa1306340 AT5G25350.1 27.542 236 127 10 315 519 166 388 7.72e-12 68.6

Find 151 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACCCTTTCTGGTTTA+TGG 0.078775 8_4:+1289973 Msa1306340:CDS
TCCAATGATGTAAAGCTTTC+TGG 0.097724 8_4:-1289711 None:intergenic
TCAACTTGGTTCCTGAAAAT+TGG 0.125267 8_4:+1288557 Msa1306340:CDS
AAGAGTCTTCACACCCTTTC+TGG 0.147620 8_4:+1289966 Msa1306340:CDS
CTCCAAAGGCTTTCTGTATC+AGG 0.215148 8_4:+1290592 Msa1306340:CDS
TCACACCCTTTCTGGTTTAT+GGG 0.221558 8_4:+1289974 Msa1306340:CDS
TTCCATCAAGTTCCATGTTT+TGG 0.222745 8_4:+1288143 Msa1306340:five_prime_UTR
CAACTTGGTTCCTGAAAATT+GGG 0.247042 8_4:+1288558 Msa1306340:CDS
GTTGAATGTTGAAGTAATTA+AGG 0.252910 8_4:+1290888 Msa1306340:CDS
CCTTGGAATGTGACCGTATA+TGG 0.262480 8_4:+1291430 Msa1306340:three_prime_UTR
CAACAACACAACATTGTAAT+TGG 0.262838 8_4:-1287975 None:intergenic
GTCCTGACTTCACTCATTTC+CGG 0.265535 8_4:+1290479 Msa1306340:CDS
GTCCTAATCTTCGGCGCCTT+TGG 0.274559 8_4:+1290123 Msa1306340:CDS
TCCTAATCTTCGGCGCCTTT+GGG 0.278407 8_4:+1290124 Msa1306340:CDS
CGATATTTACATCATTGTTT+AGG 0.287424 8_4:-1289752 None:intergenic
GTCAGGTAATCTGGCTGATT+AGG 0.288888 8_4:-1290517 None:intergenic
GACCTCGCATTTGAGTATTT+AGG 0.296175 8_4:+1290625 Msa1306340:CDS
TCAGGTAATCTGGCTGATTA+GGG 0.296950 8_4:-1290516 None:intergenic
ATGCAAGTGTCCATTGTAAA+TGG 0.297989 8_4:+1291654 Msa1306340:three_prime_UTR
ACCTCGCATTTGAGTATTTA+GGG 0.305990 8_4:+1290626 Msa1306340:CDS
TATGTTTATCGTTCTGTTGC+CGG 0.306416 8_4:+1290946 Msa1306340:CDS
GGTTCATTTGTCAGGTAATC+TGG 0.309160 8_4:-1290526 None:intergenic
ACAATGAAGCCTCAGTAATA+TGG 0.313485 8_4:+1291469 Msa1306340:three_prime_UTR
AGTGTAACACTTCTTATGTT+TGG 0.320668 8_4:-1288508 None:intergenic
GAAATATGTTTGTCTCTTCC+AGG 0.328855 8_4:-1291792 None:intergenic
CTAACTTTAAACTACCCTTT+TGG 0.330991 8_4:-1288269 None:intergenic
AATGGAGGGGCATCCCTTCT+TGG 0.338658 8_4:-1290970 None:intergenic
TTGACGAGGGTGTTGTGCAC+GGG 0.346978 8_4:+1290344 Msa1306340:CDS
CAATTACAATGTTGTGTTGT+TGG 0.349096 8_4:+1287976 Msa1306340:five_prime_UTR
TCCAGAAAGCTTTACATCAT+TGG 0.349988 8_4:+1289710 Msa1306340:CDS
CTTGCCTTCTTTCAACTAGT+TGG 0.351212 8_4:+1291614 Msa1306340:three_prime_UTR
TAAATCTTACTTGCAATTAG+TGG 0.351338 8_4:-1288767 None:intergenic
GAAGTGTTGAAACAAGTTCT+TGG 0.355603 8_4:+1288346 Msa1306340:CDS
GGGATGCAGTCTGTACTTGC+TGG 0.363431 8_4:+1290706 Msa1306340:CDS
TTGCCGGAAGCAGTGACTTT+GGG 0.371104 8_4:+1290686 Msa1306340:CDS
TTGCCTTCTTTCAACTAGTT+GGG 0.371284 8_4:+1291615 Msa1306340:three_prime_UTR
ATTACTGAGGCTTCATTGTC+AGG 0.371423 8_4:-1291465 None:intergenic
TTGTTCATTGTCCTAATCTT+CGG 0.380170 8_4:+1290114 Msa1306340:CDS
GTGCACGGGGTTACTGAATC+AGG 0.384151 8_4:+1290358 Msa1306340:CDS
CATCCATAGGTTCATTTGTC+AGG 0.387955 8_4:-1290534 None:intergenic
CATCCCAAAGTCACTGCTTC+CGG 0.404250 8_4:-1290689 None:intergenic
GCTGAGAAAACTTGAGATAA+GGG 0.404897 8_4:+1290738 Msa1306340:CDS
GAACCTATGGATGAGGCCTT+TGG 0.408205 8_4:+1290544 Msa1306340:CDS
GCCCCTCAGTTATGTGAGCT+TGG 0.420842 8_4:+1289873 Msa1306340:CDS
GACACTTGCATTATTTCTCT+TGG 0.421671 8_4:-1291642 None:intergenic
AGAAGGAAGCGATGATAGTC+AGG 0.422000 8_4:+1290912 Msa1306340:CDS
ATGGAGGGGCATCCCTTCTT+GGG 0.423321 8_4:-1290969 None:intergenic
AGCCTCAACTCCTCAAGAAA+AGG 0.428352 8_4:-1288625 None:intergenic
TTGAATTGAAATATTTATCC+TGG 0.432612 8_4:+1291774 Msa1306340:three_prime_UTR
GAAGAAGAGTGATGATGATA+AGG 0.433314 8_4:-1288047 None:intergenic
CCTGCAGATCCCTTTGACGA+GGG 0.434417 8_4:+1290331 Msa1306340:CDS
TTTCAGAGAGTGAGAACAAA+TGG 0.440221 8_4:-1290988 None:intergenic
ACCCAAAGGCGCCGAAGATT+AGG 0.441045 8_4:-1290125 None:intergenic
TGTTGTTGTGTTGTTGAACA+TGG 0.441429 8_4:+1288300 Msa1306340:exon
TTTGCCGGAAGCAGTGACTT+TGG 0.444477 8_4:+1290685 Msa1306340:CDS
GCCATTGATTGTTGTTGTGT+TGG 0.448430 8_4:+1291547 Msa1306340:three_prime_UTR
CAAATCATTGAAGACTTTGA+AGG 0.450196 8_4:+1289803 Msa1306340:CDS
CCCTCGTCAAAGGGATCTGC+AGG 0.450415 8_4:-1290331 None:intergenic
GATGCCAACTTTGCCATATA+CGG 0.454128 8_4:-1291443 None:intergenic
ACTTGCATTATTTCTCTTGG+TGG 0.460932 8_4:-1291639 None:intergenic
GGGGTGCTGATATTCATTCA+TGG 0.461105 8_4:+1288578 Msa1306340:CDS
TACCAAAACATGGAACTTGA+TGG 0.461282 8_4:-1288145 None:intergenic
TTTGACGAGGGTGTTGTGCA+CGG 0.461850 8_4:+1290343 Msa1306340:CDS
AACCTGATACAGAAAGCCTT+TGG 0.463742 8_4:-1290594 None:intergenic
CTTTCTCTGCTGAGCTGTGA+AGG 0.465139 8_4:+1288715 Msa1306340:CDS
AGCTGAGAAAACTTGAGATA+AGG 0.465986 8_4:+1290737 Msa1306340:CDS
TACATCCATTCATTGTTACT+TGG 0.471398 8_4:-1290840 None:intergenic
AATCTACTTGTCAAGATCTC+AGG 0.472486 8_4:-1288484 None:intergenic
TGCTGATATTCATTCATGGT+TGG 0.476550 8_4:+1288582 Msa1306340:CDS
AGGGGCATCCCTTCTTGGGC+CGG 0.481810 8_4:-1290965 None:intergenic
AGGATTTAGCACTGATGGCT+TGG 0.482352 8_4:+1288735 Msa1306340:CDS
GACTGCCAAGTAACAATGAA+TGG 0.488206 8_4:+1290835 Msa1306340:CDS
ACCAACACAACAACAATCAA+TGG 0.488230 8_4:-1291548 None:intergenic
AAGCCTTTGGAGTTTAGTGC+AGG 0.488319 8_4:-1290581 None:intergenic
CCATATACGGTCACATTCCA+AGG 0.490187 8_4:-1291430 None:intergenic
AGAGGACGTAGTGAAGCTTC+CGG 0.490890 8_4:-1290405 None:intergenic
GGAGTTGAGGCTCAAGAGAA+TGG 0.491782 8_4:+1288636 Msa1306340:CDS
GTTGAAGTAATTAAGGAAGA+AGG 0.492228 8_4:+1290895 Msa1306340:CDS
CAGTTATGTGAGCTTGGCAG+TGG 0.493794 8_4:+1289879 Msa1306340:CDS
ATAAGAAGTGTTACACTCAA+AGG 0.496754 8_4:+1288514 Msa1306340:CDS
CACCCTTTCTGGTTTATGGG+TGG 0.500938 8_4:+1289977 Msa1306340:CDS
GTGCACAACACCCTCGTCAA+AGG 0.501470 8_4:-1290341 None:intergenic
TGCACAACACCCTCGTCAAA+GGG 0.502790 8_4:-1290340 None:intergenic
GAGATAAGGGACTGTCCATT+CGG 0.505837 8_4:+1290751 Msa1306340:CDS
GATGCGCTTGAGAAACTTGT+CGG 0.507130 8_4:+1289774 Msa1306340:CDS
TAAGAAGTGTTACACTCAAA+GGG 0.508033 8_4:+1288515 Msa1306340:CDS
TCGATGACAAAAGCGGTGAT+TGG 0.508436 8_4:+1289676 Msa1306340:CDS
CAGAGTATAGAACTTGAAGT+TGG 0.510227 8_4:-1290022 None:intergenic
AGCCGGAAATGAGTGAAGTC+AGG 0.516302 8_4:-1290481 None:intergenic
TTACCTGACAAATGAACCTA+TGG 0.517098 8_4:+1290531 Msa1306340:CDS
AACAATCAATGGCTACATGA+TGG 0.520965 8_4:-1291537 None:intergenic
GTTCTGTTGCCGGCCCAAGA+AGG 0.525623 8_4:+1290956 Msa1306340:CDS
ATTCTCTTGTATGTCAAGCT+CGG 0.532804 8_4:-1289649 None:intergenic
TGTGAAGGATTTAGCACTGA+TGG 0.534547 8_4:+1288730 Msa1306340:CDS
TTCTGTTGCCGGCCCAAGAA+GGG 0.535830 8_4:+1290957 Msa1306340:CDS
GTGACCGTATATGGCAAAGT+TGG 0.535910 8_4:+1291439 Msa1306340:three_prime_UTR
GCTCCAAAGGCCTCATCCAT+AGG 0.536354 8_4:-1290547 None:intergenic
GCCTCAACTCCTCAAGAAAA+GGG 0.537412 8_4:-1288624 None:intergenic
TTGCTGTCTCTGAAGGATGC+CGG 0.538728 8_4:+1290386 Msa1306340:CDS
AGCCACCCATAAACCAGAAA+GGG 0.542673 8_4:-1289979 None:intergenic
TAGGGGTCATGATGCAGAGC+CGG 0.545042 8_4:-1290498 None:intergenic
GGTCTTAACAACTGCTCCAA+AGG 0.546055 8_4:-1290560 None:intergenic
ATCATATTGTCCATTGCTTG+AGG 0.546358 8_4:+1290294 Msa1306340:CDS
CAGCATCATTTGTCATCTGA+TGG 0.546732 8_4:-1290435 None:intergenic
TCCTGCAGATCCCTTTGACG+AGG 0.555334 8_4:+1290330 Msa1306340:CDS
CACAGTTGAAGACAAGGGAC+TGG 0.558137 8_4:+1290261 Msa1306340:CDS
CCTACACTTTGAAGCTCAAG+AGG 0.559487 8_4:+1291024 Msa1306340:three_prime_UTR
TTAATGAAGAGATCTAGAAA+AGG 0.561940 8_4:-1288099 None:intergenic
GACAAGGGACTGGAAGCTGT+TGG 0.564143 8_4:+1290271 Msa1306340:CDS
ACGTTTCTCTGACTTCAACT+TGG 0.564927 8_4:+1288543 Msa1306340:CDS
CCTCTTGAGCTTCAAAGTGT+AGG 0.568176 8_4:-1291024 None:intergenic
AAACTTGGAAACGCTTTCAG+TGG 0.570395 8_4:+1290660 Msa1306340:CDS
GGACCCAACTAGTTGAAAGA+AGG 0.570671 8_4:-1291618 None:intergenic
ATGAGTCAATGAGATCACTT+TGG 0.571140 8_4:+1290806 Msa1306340:CDS
TGACGAGGGTGTTGTGCACG+GGG 0.571274 8_4:+1290345 Msa1306340:CDS
CTTGGTTGCATACCAAAACA+TGG 0.574910 8_4:-1288155 None:intergenic
AATGAGATCACTTTGGATGT+CGG 0.575734 8_4:+1290813 Msa1306340:CDS
AAGCCACCCATAAACCAGAA+AGG 0.576681 8_4:-1289980 None:intergenic
TTCCACCTTCCATATTACTG+AGG 0.577064 8_4:-1291478 None:intergenic
GACAAATGAACCTATGGATG+AGG 0.578886 8_4:+1290537 Msa1306340:CDS
ATTACTTCAACATTCAACCT+CGG 0.585805 8_4:-1290883 None:intergenic
AGAGTGATGATGATAAGGAA+AGG 0.586070 8_4:-1288042 None:intergenic
ACACGTAGCTCCTCAAGCAA+TGG 0.587975 8_4:-1290304 None:intergenic
TCATCTGATGGCAAAAGTAG+AGG 0.589318 8_4:-1290423 None:intergenic
TTTCTTTAGTTTGCAAACAG+TGG 0.597043 8_4:+1288401 Msa1306340:CDS
TGTTGTGTTGTTGGACAACA+AGG 0.597948 8_4:+1287985 Msa1306340:five_prime_UTR
AAAAGTGCTGCATCGCCGAA+TGG 0.606996 8_4:-1290766 None:intergenic
CAGAGAGTGAGAACAAATGG+AGG 0.612840 8_4:-1290985 None:intergenic
AGCCTCAGTAATATGGAAGG+TGG 0.616841 8_4:+1291476 Msa1306340:three_prime_UTR
TGCCAAGCTCACATAACTGA+GGG 0.617421 8_4:-1289875 None:intergenic
CGCTTGAGAAACTTGTCGGT+AGG 0.619571 8_4:+1289778 Msa1306340:CDS
AACTTGGTTCCTGAAAATTG+GGG 0.622806 8_4:+1288559 Msa1306340:CDS
AGAGAGTGAGAACAAATGGA+GGG 0.623048 8_4:-1290984 None:intergenic
AAAACATGGAACTTGATGGA+AGG 0.624501 8_4:-1288141 None:intergenic
TCCCTAAATACTCAAATGCG+AGG 0.626376 8_4:-1290627 None:intergenic
TGAAGCCTCAGTAATATGGA+AGG 0.626705 8_4:+1291473 Msa1306340:three_prime_UTR
TCAGTAATATGGAAGGTGGA+AGG 0.628553 8_4:+1291480 Msa1306340:three_prime_UTR
TGTTGTGTTGTTGAACATGG+AGG 0.632665 8_4:+1288303 Msa1306340:exon
TGTTAGCAAAAGAAAAGCCG+AGG 0.639572 8_4:+1290866 Msa1306340:CDS
CAGGTAATCTGGCTGATTAG+GGG 0.642566 8_4:-1290515 None:intergenic
TGTAGACACAGTTGAAGACA+AGG 0.644710 8_4:+1290255 Msa1306340:CDS
AGACCTGCACTAAACTCCAA+AGG 0.647440 8_4:+1290578 Msa1306340:CDS
AATGACATCGATGACAAAAG+CGG 0.649581 8_4:+1289669 Msa1306340:CDS
CTGCCAAGCTCACATAACTG+AGG 0.656866 8_4:-1289876 None:intergenic
GCTCACATAACTGAGGGGCA+AGG 0.682791 8_4:-1289869 None:intergenic
ACAACGCTGAAAGATTGTCA+AGG 0.689288 8_4:+1288425 Msa1306340:CDS
GAGAGTGAGAACAAATGGAG+GGG 0.695193 8_4:-1290983 None:intergenic
ACGCTGAAAGATTGTCAAGG+AGG 0.697851 8_4:+1288428 Msa1306340:CDS
GCCAAGCTCACATAACTGAG+GGG 0.733620 8_4:-1289874 None:intergenic
GTAGACACAGTTGAAGACAA+GGG 0.743765 8_4:+1290256 Msa1306340:CDS
AAGTTGAAGTCAGAGAAACG+TGG 0.761191 8_4:-1288541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAATGTGATTTAAT+AGG + chr8_4:1289368-1289387 Msa1306340:intron 10.0%
!! AATTAAAATGTGATTTAATA+GGG + chr8_4:1289369-1289388 Msa1306340:intron 10.0%
!!! ACAAAAAGTTTTTTAATTTT+AGG + chr8_4:1291707-1291726 Msa1306340:three_prime_UTR 10.0%
!!! CAAAAAGTTTTTTAATTTTA+GGG + chr8_4:1291708-1291727 Msa1306340:three_prime_UTR 10.0%
!!! AAAAAGTTTTTTAATTTTAG+GGG + chr8_4:1291709-1291728 Msa1306340:three_prime_UTR 10.0%
!! AAAAAAAAAAATCTCCAAAA+GGG + chr8_4:1288255-1288274 Msa1306340:five_prime_UTR 15.0%
!! CAATAAATACTGATATATTT+AGG - chr8_4:1288901-1288920 None:intergenic 15.0%
!! TAAATCAATCTATGAATTAA+TGG - chr8_4:1289088-1289107 None:intergenic 15.0%
!!! AATTCATAGATTGATTTATT+AGG + chr8_4:1289090-1289109 Msa1306340:intron 15.0%
!!! ATTTTAATTATGTAACAATG+AGG - chr8_4:1289358-1289377 None:intergenic 15.0%
!! CAAAAAAAAAAATCTCCAAA+AGG + chr8_4:1288254-1288273 Msa1306340:five_prime_UTR 20.0%
!!! ATGTAAATATTTTATGCCAA+CGG - chr8_4:1289164-1289183 None:intergenic 20.0%
!!! CTTTTTAAGATTCTTAAGTA+AGG + chr8_4:1289222-1289241 Msa1306340:intron 20.0%
!! TTTGAAAATTTGGTATTACT+TGG + chr8_4:1289579-1289598 Msa1306340:intron 20.0%
!!! AAAGAATGATGAAAATGTTT+TGG + chr8_4:1290212-1290231 Msa1306340:intron 20.0%
!! ACTTCTTAGTCTAATTAATT+GGG - chr8_4:1291144-1291163 None:intergenic 20.0%
!! GTTGATTGGTAAAAAAATAA+TGG + chr8_4:1291206-1291225 Msa1306340:intron 20.0%
!! AAAGTAAAGTGACAAATAAT+TGG - chr8_4:1291348-1291367 None:intergenic 20.0%
!! TTGAATTGAAATATTTATCC+TGG + chr8_4:1291774-1291793 Msa1306340:three_prime_UTR 20.0%
! TTAATGAAGAGATCTAGAAA+AGG - chr8_4:1288102-1288121 None:intergenic 25.0%
!! ACTGAAAATTTTGAATGCAA+AGG - chr8_4:1288183-1288202 None:intergenic 25.0%
! TAAATCTTACTTGCAATTAG+TGG - chr8_4:1288770-1288789 None:intergenic 25.0%
!!! TTGCATTGTTTTTCATTTAC+TGG + chr8_4:1289035-1289054 Msa1306340:intron 25.0%
! ATTAGGATTCACTAAAATAC+AGG + chr8_4:1289107-1289126 Msa1306340:intron 25.0%
!!! GTTTAATTTTGATATACCGT+TGG + chr8_4:1289145-1289164 Msa1306340:intron 25.0%
!!! GTTTTTTGCACATATTCAAT+TGG - chr8_4:1289203-1289222 None:intergenic 25.0%
! TATCAATCAATTATAATCGC+CGG - chr8_4:1289266-1289285 None:intergenic 25.0%
! TGAATCCATATAAATACTTG+TGG + chr8_4:1289321-1289340 Msa1306340:intron 25.0%
! AAGTTCCACAAGTATTTATA+TGG - chr8_4:1289329-1289348 None:intergenic 25.0%
! ATCATATATGCAGTACTTAA+AGG - chr8_4:1289426-1289445 None:intergenic 25.0%
! ACTGCATATATGATTATCTT+TGG + chr8_4:1289432-1289451 Msa1306340:intron 25.0%
! TATCGAGTGATTTGAAAATT+TGG + chr8_4:1289569-1289588 Msa1306340:intron 25.0%
! AATTTGGTATTACTTGGATT+TGG + chr8_4:1289585-1289604 Msa1306340:intron 25.0%
! ATCATCTTCTGAATATTACA+TGG + chr8_4:1289612-1289631 Msa1306340:intron 25.0%
! CGATATTTACATCATTGTTT+AGG - chr8_4:1289755-1289774 None:intergenic 25.0%
! ATAAAGAAAATCATACCCAA+AGG - chr8_4:1290142-1290161 None:intergenic 25.0%
! GTTGAATGTTGAAGTAATTA+AGG + chr8_4:1290888-1290907 Msa1306340:CDS 25.0%
!! AGTCTAATTAATTGGGTTTT+GGG - chr8_4:1291137-1291156 None:intergenic 25.0%
!! TAGTCTAATTAATTGGGTTT+TGG - chr8_4:1291138-1291157 None:intergenic 25.0%
! CACTTCTTAGTCTAATTAAT+TGG - chr8_4:1291145-1291164 None:intergenic 25.0%
! TATTATATGATTCTGCTCTT+TGG + chr8_4:1291173-1291192 Msa1306340:intron 25.0%
! TTGGAAAACAAATTGTTGAT+TGG + chr8_4:1291192-1291211 Msa1306340:intron 25.0%
!!! ATTTTTCATGCCATTTACAA+TGG - chr8_4:1291667-1291686 None:intergenic 25.0%
CAACAACACAACATTGTAAT+TGG - chr8_4:1287978-1287997 None:intergenic 30.0%
CAATTACAATGTTGTGTTGT+TGG + chr8_4:1287976-1287995 Msa1306340:five_prime_UTR 30.0%
!!! ATTTTGAATGCAAAGGTACT+TGG - chr8_4:1288176-1288195 None:intergenic 30.0%
! CTAACTTTAAACTACCCTTT+TGG - chr8_4:1288272-1288291 None:intergenic 30.0%
!! TTTCTTTAGTTTGCAAACAG+TGG + chr8_4:1288401-1288420 Msa1306340:CDS 30.0%
AGTGTAACACTTCTTATGTT+TGG - chr8_4:1288511-1288530 None:intergenic 30.0%
!! ATAAGAAGTGTTACACTCAA+AGG + chr8_4:1288514-1288533 Msa1306340:CDS 30.0%
!! TAAGAAGTGTTACACTCAAA+GGG + chr8_4:1288515-1288534 Msa1306340:CDS 30.0%
!! TGATGAGAGTTTAGAGTTTT+TGG + chr8_4:1288666-1288685 Msa1306340:CDS 30.0%
AGTTGTGTGTGAATTTCAAT+TGG - chr8_4:1288840-1288859 None:intergenic 30.0%
AATGAAAAACAATGCAAACC+AGG - chr8_4:1289032-1289051 None:intergenic 30.0%
! GACAAGCATTTTTAATGATC+CGG + chr8_4:1289244-1289263 Msa1306340:intron 30.0%
CAAATCATTGAAGACTTTGA+AGG + chr8_4:1289803-1289822 Msa1306340:CDS 30.0%
TTGTTCATTGTCCTAATCTT+CGG + chr8_4:1290114-1290133 Msa1306340:CDS 30.0%
TTGGAACATCTACATTATAC+AGG + chr8_4:1290231-1290250 Msa1306340:intron 30.0%
TACATCCATTCATTGTTACT+TGG - chr8_4:1290843-1290862 None:intergenic 30.0%
ATTACTTCAACATTCAACCT+CGG - chr8_4:1290886-1290905 None:intergenic 30.0%
GTTGAAGTAATTAAGGAAGA+AGG + chr8_4:1290895-1290914 Msa1306340:CDS 30.0%
TGGTAAAAAAATAATGGCCT+TGG + chr8_4:1291212-1291231 Msa1306340:intron 30.0%
! AGTGGAAACATCACTATTTT+TGG + chr8_4:1291247-1291266 Msa1306340:intron 30.0%
!! GTGGAAACATCACTATTTTT+GGG + chr8_4:1291248-1291267 Msa1306340:intron 30.0%
!!! GCATCATCAACTTTTTCAAA+TGG + chr8_4:1291292-1291311 Msa1306340:intron 30.0%
!! TAATTTTAGGGGATCATGTT+AGG + chr8_4:1291720-1291739 Msa1306340:three_prime_UTR 30.0%
! AGAGTGATGATGATAAGGAA+AGG - chr8_4:1288045-1288064 None:intergenic 35.0%
! GAAGAAGAGTGATGATGATA+AGG - chr8_4:1288050-1288069 None:intergenic 35.0%
AAAACATGGAACTTGATGGA+AGG - chr8_4:1288144-1288163 None:intergenic 35.0%
! TTCCATCAAGTTCCATGTTT+TGG + chr8_4:1288143-1288162 Msa1306340:five_prime_UTR 35.0%
TACCAAAACATGGAACTTGA+TGG - chr8_4:1288148-1288167 None:intergenic 35.0%
! TGTTGTTGTGTTGTTGAACA+TGG + chr8_4:1288300-1288319 Msa1306340:exon 35.0%
!! GAAGTGTTGAAACAAGTTCT+TGG + chr8_4:1288346-1288365 Msa1306340:CDS 35.0%
! TCAAGGAGGAATGTTTTCAT+AGG + chr8_4:1288442-1288461 Msa1306340:CDS 35.0%
AATCTACTTGTCAAGATCTC+AGG - chr8_4:1288487-1288506 None:intergenic 35.0%
TCAACTTGGTTCCTGAAAAT+TGG + chr8_4:1288557-1288576 Msa1306340:CDS 35.0%
CAACTTGGTTCCTGAAAATT+GGG + chr8_4:1288558-1288577 Msa1306340:CDS 35.0%
AACTTGGTTCCTGAAAATTG+GGG + chr8_4:1288559-1288578 Msa1306340:CDS 35.0%
TGCTGATATTCATTCATGGT+TGG + chr8_4:1288582-1288601 Msa1306340:CDS 35.0%
!!! TGAAAAGTACCCTTTTCTTG+AGG + chr8_4:1288615-1288634 Msa1306340:CDS 35.0%
TAGGACAAGGATTCTCTAAT+TGG - chr8_4:1288969-1288988 None:intergenic 35.0%
!! GCTAAGATTTGTTGTCTGTA+TGG + chr8_4:1289003-1289022 Msa1306340:intron 35.0%
TCTGAATATTACATGGATGC+AGG + chr8_4:1289619-1289638 Msa1306340:intron 35.0%
ATTCTCTTGTATGTCAAGCT+CGG - chr8_4:1289652-1289671 None:intergenic 35.0%
AATGACATCGATGACAAAAG+CGG + chr8_4:1289669-1289688 Msa1306340:CDS 35.0%
TCCAGAAAGCTTTACATCAT+TGG + chr8_4:1289710-1289729 Msa1306340:CDS 35.0%
TCCAATGATGTAAAGCTTTC+TGG - chr8_4:1289714-1289733 None:intergenic 35.0%
CAGAGTATAGAACTTGAAGT+TGG - chr8_4:1290025-1290044 None:intergenic 35.0%
ATCATATTGTCCATTGCTTG+AGG + chr8_4:1290294-1290313 Msa1306340:CDS 35.0%
TTACCTGACAAATGAACCTA+TGG + chr8_4:1290531-1290550 Msa1306340:CDS 35.0%
ACCTCGCATTTGAGTATTTA+GGG + chr8_4:1290626-1290645 Msa1306340:CDS 35.0%
!!! TGAAAGCGTTTCCAAGTTTT+TGG - chr8_4:1290659-1290678 None:intergenic 35.0%
! ATCTCAAGTTTTCTCAGCTT+CGG - chr8_4:1290736-1290755 None:intergenic 35.0%
AGCTGAGAAAACTTGAGATA+AGG + chr8_4:1290737-1290756 Msa1306340:CDS 35.0%
GCTGAGAAAACTTGAGATAA+GGG + chr8_4:1290738-1290757 Msa1306340:CDS 35.0%
ATGAGTCAATGAGATCACTT+TGG + chr8_4:1290806-1290825 Msa1306340:CDS 35.0%
AATGAGATCACTTTGGATGT+CGG + chr8_4:1290813-1290832 Msa1306340:CDS 35.0%
TATGTTTATCGTTCTGTTGC+CGG + chr8_4:1290946-1290965 Msa1306340:CDS 35.0%
TTTCAGAGAGTGAGAACAAA+TGG - chr8_4:1290991-1291010 None:intergenic 35.0%
ATTGAAATGTGCATGCCATA+TGG + chr8_4:1291094-1291113 Msa1306340:intron 35.0%
! ATAATTTTGTGTTGCAGCCT+TGG + chr8_4:1291413-1291432 Msa1306340:intron 35.0%
ACAATGAAGCCTCAGTAATA+TGG + chr8_4:1291469-1291488 Msa1306340:three_prime_UTR 35.0%
AAGGTGGAAGGAAGAAAAAT+AGG + chr8_4:1291492-1291511 Msa1306340:three_prime_UTR 35.0%
AGGTGGAAGGAAGAAAAATA+GGG + chr8_4:1291493-1291512 Msa1306340:three_prime_UTR 35.0%
AACAATCAATGGCTACATGA+TGG - chr8_4:1291540-1291559 None:intergenic 35.0%
ACCAACACAACAACAATCAA+TGG - chr8_4:1291551-1291570 None:intergenic 35.0%
TTGCCTTCTTTCAACTAGTT+GGG + chr8_4:1291615-1291634 Msa1306340:three_prime_UTR 35.0%
! ACTTGCATTATTTCTCTTGG+TGG - chr8_4:1291642-1291661 None:intergenic 35.0%
! GACACTTGCATTATTTCTCT+TGG - chr8_4:1291645-1291664 None:intergenic 35.0%
ATGCAAGTGTCCATTGTAAA+TGG + chr8_4:1291654-1291673 Msa1306340:three_prime_UTR 35.0%
GAAATATGTTTGTCTCTTCC+AGG - chr8_4:1291795-1291814 None:intergenic 35.0%
! TGTTGTGTTGTTGGACAACA+AGG + chr8_4:1287985-1288004 Msa1306340:five_prime_UTR 40.0%
CTTGGTTGCATACCAAAACA+TGG - chr8_4:1288158-1288177 None:intergenic 40.0%
! TGTTGTGTTGTTGAACATGG+AGG + chr8_4:1288303-1288322 Msa1306340:exon 40.0%
ACAACGCTGAAAGATTGTCA+AGG + chr8_4:1288425-1288444 Msa1306340:CDS 40.0%
AAGTTGAAGTCAGAGAAACG+TGG - chr8_4:1288544-1288563 None:intergenic 40.0%
ACGTTTCTCTGACTTCAACT+TGG + chr8_4:1288543-1288562 Msa1306340:CDS 40.0%
! ATATCAGCACCCCAATTTTC+AGG - chr8_4:1288571-1288590 None:intergenic 40.0%
! TGTGAAGGATTTAGCACTGA+TGG + chr8_4:1288730-1288749 Msa1306340:CDS 40.0%
! TAGACCTTCCGGACATTTTT+CGG + chr8_4:1288937-1288956 Msa1306340:intron 40.0%
TAGAGAATCCTTGTCCTATG+AGG + chr8_4:1288971-1288990 Msa1306340:intron 40.0%
AATCCTTGTCCTATGAGGAT+AGG + chr8_4:1288976-1288995 Msa1306340:intron 40.0%
ATGGATTCAACTAGCATGCA+TGG - chr8_4:1289310-1289329 None:intergenic 40.0%
TCACACTGCTTATGCTTTCA+GGG - chr8_4:1289473-1289492 None:intergenic 40.0%
ATCACACTGCTTATGCTTTC+AGG - chr8_4:1289474-1289493 None:intergenic 40.0%
!! TTCACACCCTTTCTGGTTTA+TGG + chr8_4:1289973-1289992 Msa1306340:CDS 40.0%
!! TCACACCCTTTCTGGTTTAT+GGG + chr8_4:1289974-1289993 Msa1306340:CDS 40.0%
TGTAGACACAGTTGAAGACA+AGG + chr8_4:1290255-1290274 Msa1306340:CDS 40.0%
GTAGACACAGTTGAAGACAA+GGG + chr8_4:1290256-1290275 Msa1306340:CDS 40.0%
!!! GGTTTTATTGCTGTCTCTGA+AGG + chr8_4:1290379-1290398 Msa1306340:CDS 40.0%
TCATCTGATGGCAAAAGTAG+AGG - chr8_4:1290426-1290445 None:intergenic 40.0%
CAGCATCATTTGTCATCTGA+TGG - chr8_4:1290438-1290457 None:intergenic 40.0%
TCAGGTAATCTGGCTGATTA+GGG - chr8_4:1290519-1290538 None:intergenic 40.0%
GGTTCATTTGTCAGGTAATC+TGG - chr8_4:1290529-1290548 None:intergenic 40.0%
CATCCATAGGTTCATTTGTC+AGG - chr8_4:1290537-1290556 None:intergenic 40.0%
GACAAATGAACCTATGGATG+AGG + chr8_4:1290537-1290556 Msa1306340:CDS 40.0%
AACCTGATACAGAAAGCCTT+TGG - chr8_4:1290597-1290616 None:intergenic 40.0%
GACCTCGCATTTGAGTATTT+AGG + chr8_4:1290625-1290644 Msa1306340:CDS 40.0%
TCCCTAAATACTCAAATGCG+AGG - chr8_4:1290630-1290649 None:intergenic 40.0%
! AGGGAAGTATGCCAAAAACT+TGG + chr8_4:1290645-1290664 Msa1306340:CDS 40.0%
AAACTTGGAAACGCTTTCAG+TGG + chr8_4:1290660-1290679 Msa1306340:CDS 40.0%
GACTGCCAAGTAACAATGAA+TGG + chr8_4:1290835-1290854 Msa1306340:CDS 40.0%
TGTTAGCAAAAGAAAAGCCG+AGG + chr8_4:1290866-1290885 Msa1306340:CDS 40.0%
AGAGAGTGAGAACAAATGGA+GGG - chr8_4:1290987-1291006 None:intergenic 40.0%
CCACTAGTAAGTAGTAACCA+AGG - chr8_4:1291232-1291251 None:intergenic 40.0%
CCTTGGTTACTACTTACTAG+TGG + chr8_4:1291229-1291248 Msa1306340:intron 40.0%
GATGCCAACTTTGCCATATA+CGG - chr8_4:1291446-1291465 None:intergenic 40.0%
ATTACTGAGGCTTCATTGTC+AGG - chr8_4:1291468-1291487 None:intergenic 40.0%
TGAAGCCTCAGTAATATGGA+AGG + chr8_4:1291473-1291492 Msa1306340:three_prime_UTR 40.0%
TTCCACCTTCCATATTACTG+AGG - chr8_4:1291481-1291500 None:intergenic 40.0%
TCAGTAATATGGAAGGTGGA+AGG + chr8_4:1291480-1291499 Msa1306340:three_prime_UTR 40.0%
GGTGGAAGGAAGAAAAATAG+GGG + chr8_4:1291494-1291513 Msa1306340:three_prime_UTR 40.0%
! GCCATTGATTGTTGTTGTGT+TGG + chr8_4:1291547-1291566 Msa1306340:three_prime_UTR 40.0%
CTTGCCTTCTTTCAACTAGT+TGG + chr8_4:1291614-1291633 Msa1306340:three_prime_UTR 40.0%
ACGCTGAAAGATTGTCAAGG+AGG + chr8_4:1288428-1288447 Msa1306340:CDS 45.0%
!! GGGGTGCTGATATTCATTCA+TGG + chr8_4:1288578-1288597 Msa1306340:CDS 45.0%
! ACCCTTTTCTTGAGGAGTTG+AGG + chr8_4:1288623-1288642 Msa1306340:CDS 45.0%
GCCTCAACTCCTCAAGAAAA+GGG - chr8_4:1288627-1288646 None:intergenic 45.0%
AGCCTCAACTCCTCAAGAAA+AGG - chr8_4:1288628-1288647 None:intergenic 45.0%
!! AGGATTTAGCACTGATGGCT+TGG + chr8_4:1288735-1288754 Msa1306340:CDS 45.0%
CAAGATCCTGGATTCGAATC+TGG + chr8_4:1288861-1288880 Msa1306340:intron 45.0%
CTTCATCCAGATTCGAATCC+AGG - chr8_4:1288870-1288889 None:intergenic 45.0%
TCTACCGAAAAATGTCCGGA+AGG - chr8_4:1288944-1288963 None:intergenic 45.0%
GGTCTCTACCGAAAAATGTC+CGG - chr8_4:1288948-1288967 None:intergenic 45.0%
AAGCCTATCCTCATAGGACA+AGG - chr8_4:1288982-1289001 None:intergenic 45.0%
TTGTCCTATGAGGATAGGCT+TGG + chr8_4:1288981-1289000 Msa1306340:intron 45.0%
TTAGCCAAGCCTATCCTCAT+AGG - chr8_4:1288988-1289007 None:intergenic 45.0%
TCGATGACAAAAGCGGTGAT+TGG + chr8_4:1289676-1289695 Msa1306340:CDS 45.0%
GATGCGCTTGAGAAACTTGT+CGG + chr8_4:1289774-1289793 Msa1306340:CDS 45.0%
TGCCAAGCTCACATAACTGA+GGG - chr8_4:1289878-1289897 None:intergenic 45.0%
AAGAGTCTTCACACCCTTTC+TGG + chr8_4:1289966-1289985 Msa1306340:CDS 45.0%
AGCCACCCATAAACCAGAAA+GGG - chr8_4:1289982-1290001 None:intergenic 45.0%
AAGCCACCCATAAACCAGAA+AGG - chr8_4:1289983-1290002 None:intergenic 45.0%
GTCCTGACTTCACTCATTTC+CGG + chr8_4:1290479-1290498 Msa1306340:CDS 45.0%
CAGGTAATCTGGCTGATTAG+GGG - chr8_4:1290518-1290537 None:intergenic 45.0%
GTCAGGTAATCTGGCTGATT+AGG - chr8_4:1290520-1290539 None:intergenic 45.0%
GGTCTTAACAACTGCTCCAA+AGG - chr8_4:1290563-1290582 None:intergenic 45.0%
AGACCTGCACTAAACTCCAA+AGG + chr8_4:1290578-1290597 Msa1306340:CDS 45.0%
!! AAGCCTTTGGAGTTTAGTGC+AGG - chr8_4:1290584-1290603 None:intergenic 45.0%
CTCCAAAGGCTTTCTGTATC+AGG + chr8_4:1290592-1290611 Msa1306340:CDS 45.0%
GAGATAAGGGACTGTCCATT+CGG + chr8_4:1290751-1290770 Msa1306340:CDS 45.0%
! TGCAGCACTTTTGTCTGGTT+TGG + chr8_4:1290777-1290796 Msa1306340:CDS 45.0%
AGAAGGAAGCGATGATAGTC+AGG + chr8_4:1290912-1290931 Msa1306340:CDS 45.0%
GAGAGTGAGAACAAATGGAG+GGG - chr8_4:1290986-1291005 None:intergenic 45.0%
CAGAGAGTGAGAACAAATGG+AGG - chr8_4:1290988-1291007 None:intergenic 45.0%
CCTCTTGAGCTTCAAAGTGT+AGG - chr8_4:1291027-1291046 None:intergenic 45.0%
!! CCTACACTTTGAAGCTCAAG+AGG + chr8_4:1291024-1291043 Msa1306340:three_prime_UTR 45.0%
!!! GGTTTTGGGTAGTTGTGAAG+TGG - chr8_4:1291123-1291142 None:intergenic 45.0%
CCATATACGGTCACATTCCA+AGG - chr8_4:1291433-1291452 None:intergenic 45.0%
CCTTGGAATGTGACCGTATA+TGG + chr8_4:1291430-1291449 Msa1306340:three_prime_UTR 45.0%
GTGACCGTATATGGCAAAGT+TGG + chr8_4:1291439-1291458 Msa1306340:three_prime_UTR 45.0%
AGCCTCAGTAATATGGAAGG+TGG + chr8_4:1291476-1291495 Msa1306340:three_prime_UTR 45.0%
GGACCCAACTAGTTGAAAGA+AGG - chr8_4:1291621-1291640 None:intergenic 45.0%
GGAGTTGAGGCTCAAGAGAA+TGG + chr8_4:1288636-1288655 Msa1306340:CDS 50.0%
CTTTCTCTGCTGAGCTGTGA+AGG + chr8_4:1288715-1288734 Msa1306340:CDS 50.0%
CACACACAACTGCAAGATCC+TGG + chr8_4:1288849-1288868 Msa1306340:intron 50.0%
GTGATAGACGCTAGACCTTC+CGG + chr8_4:1288926-1288945 Msa1306340:intron 50.0%
TTGTTGTCTGTATGGCTGCC+TGG + chr8_4:1289011-1289030 Msa1306340:intron 50.0%
CGCTTGAGAAACTTGTCGGT+AGG + chr8_4:1289778-1289797 Msa1306340:CDS 50.0%
GCCAAGCTCACATAACTGAG+GGG - chr8_4:1289877-1289896 None:intergenic 50.0%
CTGCCAAGCTCACATAACTG+AGG - chr8_4:1289879-1289898 None:intergenic 50.0%
CAGTTATGTGAGCTTGGCAG+TGG + chr8_4:1289879-1289898 Msa1306340:CDS 50.0%
!! CACCCTTTCTGGTTTATGGG+TGG + chr8_4:1289977-1289996 Msa1306340:CDS 50.0%
TCCTAATCTTCGGCGCCTTT+GGG + chr8_4:1290124-1290143 Msa1306340:CDS 50.0%
CACAGTTGAAGACAAGGGAC+TGG + chr8_4:1290261-1290280 Msa1306340:CDS 50.0%
ACACGTAGCTCCTCAAGCAA+TGG - chr8_4:1290307-1290326 None:intergenic 50.0%
TGCACAACACCCTCGTCAAA+GGG - chr8_4:1290343-1290362 None:intergenic 50.0%
!! TTTGACGAGGGTGTTGTGCA+CGG + chr8_4:1290343-1290362 Msa1306340:CDS 50.0%
! TTGCTGTCTCTGAAGGATGC+CGG + chr8_4:1290386-1290405 Msa1306340:CDS 50.0%
AGAGGACGTAGTGAAGCTTC+CGG - chr8_4:1290408-1290427 None:intergenic 50.0%
AGCCGGAAATGAGTGAAGTC+AGG - chr8_4:1290484-1290503 None:intergenic 50.0%
GAACCTATGGATGAGGCCTT+TGG + chr8_4:1290544-1290563 Msa1306340:CDS 50.0%
! ACGCTTTCAGTGGCTTTTGC+CGG + chr8_4:1290670-1290689 Msa1306340:CDS 50.0%
TTTGCCGGAAGCAGTGACTT+TGG + chr8_4:1290685-1290704 Msa1306340:CDS 50.0%
TTGCCGGAAGCAGTGACTTT+GGG + chr8_4:1290686-1290705 Msa1306340:CDS 50.0%
CATCCCAAAGTCACTGCTTC+CGG - chr8_4:1290692-1290711 None:intergenic 50.0%
!! AAAAGTGCTGCATCGCCGAA+TGG - chr8_4:1290769-1290788 None:intergenic 50.0%
GTTGTGAAGTGGCTGCCATA+TGG - chr8_4:1291112-1291131 None:intergenic 50.0%
GCTCACATAACTGAGGGGCA+AGG - chr8_4:1289872-1289891 None:intergenic 55.0%
GCCCCTCAGTTATGTGAGCT+TGG + chr8_4:1289873-1289892 Msa1306340:CDS 55.0%
GTCCTAATCTTCGGCGCCTT+TGG + chr8_4:1290123-1290142 Msa1306340:CDS 55.0%
!! ACCCAAAGGCGCCGAAGATT+AGG - chr8_4:1290128-1290147 None:intergenic 55.0%
GACAAGGGACTGGAAGCTGT+TGG + chr8_4:1290271-1290290 Msa1306340:CDS 55.0%
TCCTGCAGATCCCTTTGACG+AGG + chr8_4:1290330-1290349 Msa1306340:CDS 55.0%
CCTGCAGATCCCTTTGACGA+GGG + chr8_4:1290331-1290350 Msa1306340:CDS 55.0%
GTGCACAACACCCTCGTCAA+AGG - chr8_4:1290344-1290363 None:intergenic 55.0%
!! TTGACGAGGGTGTTGTGCAC+GGG + chr8_4:1290344-1290363 Msa1306340:CDS 55.0%
GTGCACGGGGTTACTGAATC+AGG + chr8_4:1290358-1290377 Msa1306340:CDS 55.0%
TAGGGGTCATGATGCAGAGC+CGG - chr8_4:1290501-1290520 None:intergenic 55.0%
GCTCCAAAGGCCTCATCCAT+AGG - chr8_4:1290550-1290569 None:intergenic 55.0%
GGGATGCAGTCTGTACTTGC+TGG + chr8_4:1290706-1290725 Msa1306340:CDS 55.0%
! GGCGATGCAGCACTTTTGTC+TGG + chr8_4:1290772-1290791 Msa1306340:CDS 55.0%
TTCTGTTGCCGGCCCAAGAA+GGG + chr8_4:1290957-1290976 Msa1306340:CDS 55.0%
!! ATGGAGGGGCATCCCTTCTT+GGG - chr8_4:1290972-1290991 None:intergenic 55.0%
!! AATGGAGGGGCATCCCTTCT+TGG - chr8_4:1290973-1290992 None:intergenic 55.0%
CCCTCGTCAAAGGGATCTGC+AGG - chr8_4:1290334-1290353 None:intergenic 60.0%
!! TGACGAGGGTGTTGTGCACG+GGG + chr8_4:1290345-1290364 Msa1306340:CDS 60.0%
GTTCTGTTGCCGGCCCAAGA+AGG + chr8_4:1290956-1290975 Msa1306340:CDS 60.0%
!! AGGGGCATCCCTTCTTGGGC+CGG - chr8_4:1290968-1290987 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1287970 1291818 1287970 ID=Msa1306340;Name=Msa1306340
chr8_4 mRNA 1287970 1291818 1287970 ID=Msa1306340-mRNA-1;Parent=Msa1306340;Name=Msa1306340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=349|1|1|1|0.66|0.5|4|426|573
chr8_4 exon 1287970 1288779 1287970 ID=Msa1306340-mRNA-1:exon:268;Parent=Msa1306340-mRNA-1
chr8_4 exon 1289641 1290145 1289641 ID=Msa1306340-mRNA-1:exon:269;Parent=Msa1306340-mRNA-1
chr8_4 exon 1290253 1291045 1290253 ID=Msa1306340-mRNA-1:exon:270;Parent=Msa1306340-mRNA-1
chr8_4 exon 1291430 1291818 1291430 ID=Msa1306340-mRNA-1:exon:271;Parent=Msa1306340-mRNA-1
chr8_4 five_prime_UTR 1287970 1288318 1287970 ID=Msa1306340-mRNA-1:five_prime_utr;Parent=Msa1306340-mRNA-1
chr8_4 CDS 1288319 1288779 1288319 ID=Msa1306340-mRNA-1:cds;Parent=Msa1306340-mRNA-1
chr8_4 CDS 1289641 1290145 1289641 ID=Msa1306340-mRNA-1:cds;Parent=Msa1306340-mRNA-1
chr8_4 CDS 1290253 1291008 1290253 ID=Msa1306340-mRNA-1:cds;Parent=Msa1306340-mRNA-1
chr8_4 three_prime_UTR 1291009 1291045 1291009 ID=Msa1306340-mRNA-1:three_prime_utr;Parent=Msa1306340-mRNA-1
chr8_4 three_prime_UTR 1291430 1291818 1291430 ID=Msa1306340-mRNA-1:three_prime_utr;Parent=Msa1306340-mRNA-1
Gene Sequence

>Msa1306340

ATGGAGGAGTGTAAGAGAGACAAAGATGAAGTGTTGAAACAAGTTCTTGGAACAGTGAAGTCACAGAAAGACAGAAATTCAGTTTCTTTAGTTTGCAAACAGTGGTACAACGCTGAAAGATTGTCAAGGAGGAATGTTTTCATAGGTAACTGTTATTCTGTCACTCCTGAGATCTTGACAAGTAGATTTCCAAACATAAGAAGTGTTACACTCAAAGGGAAGCCACGTTTCTCTGACTTCAACTTGGTTCCTGAAAATTGGGGTGCTGATATTCATTCATGGTTGGTTGTTTTTGCTGAAAAGTACCCTTTTCTTGAGGAGTTGAGGCTCAAGAGAATGGTTGTTACTGATGAGAGTTTAGAGTTTTTGGCTTTTTCTTTTCATAATTTCAAAGCACTTTCTCTGCTGAGCTGTGAAGGATTTAGCACTGATGGCTTGGCTGCACTTGCCACTAATTGCAAGAATTTAACCGAGCTTGACATACAAGAGAATGACATCGATGACAAAAGCGGTGATTGGTTGAGTTGCTTTCCAGAAAGCTTTACATCATTGGAAGTATTGAACTTCGCTAACCTAAACAATGATGTAAATATCGATGCGCTTGAGAAACTTGTCGGTAGGTGCAAATCATTGAAGACTTTGAAGGTTAACAAAAGCGTAACGCTAGAACAGTTTCAAAGACTTCTTGTCCTTGCCCCTCAGTTATGTGAGCTTGGCAGTGGCTCATTTTCACAAGAGCTGACATGTCAGCAGTATTTAGAGCTCGAAAGTGCGTTCAACAATTGTAAGAGTCTTCACACCCTTTCTGGTTTATGGGTGGCTTCAGCATCAGCACAGTATATCCAACTTCAAGTTCTATACTCTGCATGCACAAATCTGACTTTCTTGAATTTTAGTTATGCTCTTGTTGACAGTGAAGATCTTACTGATCTTCTTGTTCATTGTCCTAATCTTCGGCGCCTTTGGGTTGTAGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATATTGTCCATTGCTTGAGGAGCTACGTGTTTTTCCTGCAGATCCCTTTGACGAGGGTGTTGTGCACGGGGTTACTGAATCAGGTTTTATTGCTGTCTCTGAAGGATGCCGGAAGCTTCACTACGTCCTCTACTTTTGCCATCAGATGACAAATGATGCTGTTGCTACTGTTGTGCAAAACTGTCCTGACTTCACTCATTTCCGGCTCTGCATCATGACCCCTAATCAGCCAGATTACCTGACAAATGAACCTATGGATGAGGCCTTTGGAGCAGTTGTTAAGACCTGCACTAAACTCCAAAGGCTTTCTGTATCAGGTTATCTAACTGACCTCGCATTTGAGTATTTAGGGAAGTATGCCAAAAACTTGGAAACGCTTTCAGTGGCTTTTGCCGGAAGCAGTGACTTTGGGATGCAGTCTGTACTTGCTGGCTGTCCGAAGCTGAGAAAACTTGAGATAAGGGACTGTCCATTCGGCGATGCAGCACTTTTGTCTGGTTTGGAGAAGTATGAGTCAATGAGATCACTTTGGATGTCGGACTGCCAAGTAACAATGAATGGATGTAGATTGTTAGCAAAAGAAAAGCCGAGGTTGAATGTTGAAGTAATTAAGGAAGAAGGAAGCGATGATAGTCAGGCTGAAAAAGTTTATGTTTATCGTTCTGTTGCCGGCCCAAGAAGGGATGCCCCTCCATTTGTTCTCACTCTCTGA
Protein sequence

>Msa1306340

MEECKRDKDEVLKQVLGTVKSQKDRNSVSLVCKQWYNAERLSRRNVFIGNCYSVTPEILTSRFPNIRSVTLKGKPRFSDFNLVPENWGADIHSWLVVFAEKYPFLEELRLKRMVVTDESLEFLAFSFHNFKALSLLSCEGFSTDGLAALATNCKNLTELDIQENDIDDKSGDWLSCFPESFTSLEVLNFANLNNDVNIDALEKLVGRCKSLKTLKVNKSVTLEQFQRLLVLAPQLCELGSGSFSQELTCQQYLELESAFNNCKSLHTLSGLWVASASAQYIQLQVLYSACTNLTFLNFSYALVDSEDLTDLLVHCPNLRRLWVVDTVEDKGLEAVGSYCPLLEELRVFPADPFDEGVVHGVTESGFIAVSEGCRKLHYVLYFCHQMTNDAVATVVQNCPDFTHFRLCIMTPNQPDYLTNEPMDEAFGAVVKTCTKLQRLSVSGYLTDLAFEYLGKYAKNLETLSVAFAGSSDFGMQSVLAGCPKLRKLEIRDCPFGDAALLSGLEKYESMRSLWMSDCQVTMNGCRLLAKEKPRLNVEVIKEEGSDDSQAEKVYVYRSVAGPRRDAPPFVLTL*