Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526420 | XP_013447073.1 | 97.208 | 573 | 16 | 0 | 1 | 573 | 1 | 573 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526420 | sp|Q7XVM8|TIR1B_ORYSJ | 53.913 | 575 | 250 | 5 | 9 | 573 | 6 | 575 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526420 | A0A072U5G2 | 97.208 | 573 | 16 | 0 | 1 | 573 | 1 | 573 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0526420 | 0.817709 | 2.865331e-52 | -8.615850e-47 |
| Msa0001940 | Msa0526420 | 0.801940 | 7.102665e-49 | -8.615850e-47 |
| Msa0003720 | Msa0526420 | 0.809658 | 1.697201e-50 | -8.615850e-47 |
| Msa0026130 | Msa0526420 | 0.812581 | 3.945000e-51 | -8.615850e-47 |
| Msa0027230 | Msa0526420 | 0.837101 | 6.339727e-57 | -8.615850e-47 |
| Msa0027260 | Msa0526420 | 0.810888 | 9.215548e-51 | -8.615850e-47 |
| Msa0028420 | Msa0526420 | 0.835783 | 1.372258e-56 | -8.615850e-47 |
| Msa0035340 | Msa0526420 | 0.800517 | 1.389051e-48 | -8.615850e-47 |
| Msa0042610 | Msa0526420 | 0.821114 | 4.796725e-53 | -8.615850e-47 |
| Msa0075220 | Msa0526420 | 0.812923 | 3.321178e-51 | -8.615850e-47 |
| Msa0081520 | Msa0526420 | 0.804668 | 1.934196e-49 | -8.615850e-47 |
| Msa0092790 | Msa0526420 | 0.818447 | 1.951196e-52 | -8.615850e-47 |
| Msa0105370 | Msa0526420 | 0.810524 | 1.104178e-50 | -8.615850e-47 |
| Msa0122970 | Msa0526420 | 0.838529 | 2.724990e-57 | -8.615850e-47 |
| Msa0124060 | Msa0526420 | 0.822748 | 2.006435e-53 | -8.615850e-47 |
| Msa0137880 | Msa0526420 | 0.803215 | 3.877328e-49 | -8.615850e-47 |
| Msa0140820 | Msa0526420 | 0.804008 | 2.654373e-49 | -8.615850e-47 |
| Msa0146280 | Msa0526420 | 0.809207 | 2.120540e-50 | -8.615850e-47 |
| Msa0166590 | Msa0526420 | 0.804344 | 2.260337e-49 | -8.615850e-47 |
| Msa0167520 | Msa0526420 | 0.810269 | 1.253536e-50 | -8.615850e-47 |
| Msa0168500 | Msa0526420 | 0.836952 | 6.919556e-57 | -8.615850e-47 |
| Msa0174730 | Msa0526420 | 0.800152 | 1.648021e-48 | -8.615850e-47 |
| Msa0186010 | Msa0526420 | 0.802599 | 5.196990e-49 | -8.615850e-47 |
| Msa0189700 | Msa0526420 | 0.808783 | 2.613830e-50 | -8.615850e-47 |
| Msa0213280 | Msa0526420 | 0.807287 | 5.440052e-50 | -8.615850e-47 |
| Msa0221000 | Msa0526420 | 0.813121 | 3.004194e-51 | -8.615850e-47 |
| Msa0225100 | Msa0526420 | 0.804578 | 2.019772e-49 | -8.615850e-47 |
| Msa0229230 | Msa0526420 | 0.822429 | 2.380022e-53 | -8.615850e-47 |
| Msa0232010 | Msa0526420 | 0.816374 | 5.716304e-52 | -8.615850e-47 |
| Msa0232080 | Msa0526420 | 0.818150 | 2.278228e-52 | -8.615850e-47 |
| Msa0369450 | Msa0526420 | 0.804583 | 2.015199e-49 | -8.615850e-47 |
| Msa0378720 | Msa0526420 | 0.802877 | 4.555006e-49 | -8.615850e-47 |
| Msa0405710 | Msa0526420 | 0.805898 | 1.068985e-49 | -8.615850e-47 |
| Msa0461630 | Msa0526420 | 0.821235 | 4.498416e-53 | -8.615850e-47 |
| Msa0253700 | Msa0526420 | 0.809413 | 1.915547e-50 | -8.615850e-47 |
| Msa0255090 | Msa0526420 | 0.821751 | 3.417854e-53 | -8.615850e-47 |
| Msa0259380 | Msa0526420 | 0.815740 | 7.919460e-52 | -8.615850e-47 |
| Msa0266180 | Msa0526420 | 0.800517 | 1.388844e-48 | -8.615850e-47 |
| Msa0267110 | Msa0526420 | 0.819529 | 1.107411e-52 | -8.615850e-47 |
| Msa0275080 | Msa0526420 | 0.810048 | 1.399071e-50 | -8.615850e-47 |
| Msa0280610 | Msa0526420 | 0.800507 | 1.395260e-48 | -8.615850e-47 |
| Msa0287740 | Msa0526420 | 0.814916 | 1.207191e-51 | -8.615850e-47 |
| Msa0292330 | Msa0526420 | 0.814541 | 1.461739e-51 | -8.615850e-47 |
| Msa0292400 | Msa0526420 | 0.806659 | 7.388150e-50 | -8.615850e-47 |
| Msa0300320 | Msa0526420 | 0.804335 | 2.269991e-49 | -8.615850e-47 |
| Msa0307850 | Msa0526420 | 0.813956 | 1.968931e-51 | -8.615850e-47 |
| Msa0315980 | Msa0526420 | 0.812345 | 4.443037e-51 | -8.615850e-47 |
| Msa0336010 | Msa0526420 | 0.806817 | 6.841997e-50 | -8.615850e-47 |
| Msa0337700 | Msa0526420 | 0.821083 | 4.875853e-53 | -8.615850e-47 |
| Msa0339500 | Msa0526420 | 0.852920 | 3.363641e-61 | -8.615850e-47 |
| Msa0524500 | Msa0526420 | 0.808440 | 3.093456e-50 | -8.615850e-47 |
| Msa0526420 | Msa0530780 | 0.813164 | 2.940292e-51 | -8.615850e-47 |
| Msa0526420 | Msa0532070 | 0.831806 | 1.354800e-55 | -8.615850e-47 |
| Msa0526420 | Msa0556060 | 0.815775 | 7.775544e-52 | -8.615850e-47 |
| Msa0526420 | Msa0588360 | 0.836612 | 8.450525e-57 | -8.615850e-47 |
| Msa0526420 | Msa0591170 | 0.802506 | 5.431660e-49 | -8.615850e-47 |
| Msa0526420 | Msa0597790 | 0.818928 | 1.517277e-52 | -8.615850e-47 |
| Msa0526420 | Msa0606580 | 0.804163 | 2.464378e-49 | -8.615850e-47 |
| Msa0526420 | Msa0608320 | 0.812143 | 4.916711e-51 | -8.615850e-47 |
| Msa0526420 | Msa0614000 | 0.804911 | 1.721232e-49 | -8.615850e-47 |
| Msa0526420 | Msa0615710 | 0.827296 | 1.692270e-54 | -8.615850e-47 |
| Msa0526420 | Msa0626630 | 0.800433 | 1.444760e-48 | -8.615850e-47 |
| Msa0526420 | Msa0630120 | 0.821924 | 3.116316e-53 | -8.615850e-47 |
| Msa0526420 | Msa0631170 | 0.817203 | 3.724676e-52 | -8.615850e-47 |
| Msa0526420 | Msa0638480 | 0.819420 | 1.172212e-52 | -8.615850e-47 |
| Msa0526420 | Msa0669520 | 0.820197 | 7.787899e-53 | -8.615850e-47 |
| Msa0526420 | Msa0738040 | 0.810975 | 8.821020e-51 | -8.615850e-47 |
| Msa0526420 | Msa0756490 | 0.825164 | 5.442625e-54 | -8.615850e-47 |
| Msa0526420 | Msa0790400 | 0.802908 | 4.488290e-49 | -8.615850e-47 |
| Msa0526420 | Msa0829330 | 0.802675 | 5.014047e-49 | -8.615850e-47 |
| Msa0526420 | Msa0835490 | 0.828728 | 7.648649e-55 | -8.615850e-47 |
| Msa0526420 | Msa0845440 | 0.802031 | 6.803296e-49 | -8.615850e-47 |
| Msa0526420 | Msa0861510 | 0.804666 | 1.936314e-49 | -8.615850e-47 |
| Msa0526420 | Msa0861870 | 0.801378 | 9.262754e-49 | -8.615850e-47 |
| Msa0526420 | Msa0880780 | 0.831703 | 1.436234e-55 | -8.615850e-47 |
| Msa0526420 | Msa0881290 | 0.808015 | 3.812053e-50 | -8.615850e-47 |
| Msa0526420 | Msa0902760 | 0.806641 | 7.454595e-50 | -8.615850e-47 |
| Msa0526420 | Msa0945110 | 0.836276 | 1.029111e-56 | -8.615850e-47 |
| Msa0526420 | Msa0967870 | 0.803710 | 3.061368e-49 | -8.615850e-47 |
| Msa0526420 | Msa0980140 | 0.802736 | 4.869145e-49 | -8.615850e-47 |
| Msa0526420 | Msa1006840 | 0.802433 | 5.624036e-49 | -8.615850e-47 |
| Msa0526420 | Msa1013400 | 0.809670 | 1.687369e-50 | -8.615850e-47 |
| Msa0526420 | Msa1019470 | 0.801913 | 7.193618e-49 | -8.615850e-47 |
| Msa0526420 | Msa1066490 | 0.803689 | 3.091822e-49 | -8.615850e-47 |
| Msa0526420 | Msa1074370 | 0.820375 | 7.091986e-53 | -8.615850e-47 |
| Msa0526420 | Msa1077570 | 0.810590 | 1.068583e-50 | -8.615850e-47 |
| Msa0526420 | Msa1078170 | 0.813832 | 2.096837e-51 | -8.615850e-47 |
| Msa0526420 | Msa1085930 | 0.957772 | 1.208630e-115 | -8.615850e-47 |
| Msa0526420 | Msa1093530 | 0.811155 | 8.066163e-51 | -8.615850e-47 |
| Msa0526420 | Msa1093840 | 0.803795 | 2.938735e-49 | -8.615850e-47 |
| Msa0526420 | Msa1103990 | 0.802314 | 5.949182e-49 | -8.615850e-47 |
| Msa0526420 | Msa1106700 | 0.814088 | 1.841027e-51 | -8.615850e-47 |
| Msa0526420 | Msa1113340 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0526420 | Msa1124110 | 0.830733 | 2.486349e-55 | -8.615850e-47 |
| Msa0526420 | Msa1128600 | 0.827862 | 1.237158e-54 | -8.615850e-47 |
| Msa0526420 | Msa1140210 | 0.805119 | 1.556521e-49 | -8.615850e-47 |
| Msa0526420 | Msa1148910 | 0.816136 | 6.461578e-52 | -8.615850e-47 |
| Msa0526420 | Msa1168950 | 0.810886 | 9.220500e-51 | -8.615850e-47 |
| Msa0526420 | Msa1171780 | 0.883290 | 5.085384e-71 | -8.615850e-47 |
| Msa0526420 | Msa1174780 | 0.833743 | 4.475623e-56 | -8.615850e-47 |
| Msa0526420 | Msa1189070 | 0.812959 | 3.260419e-51 | -8.615850e-47 |
| Msa0526420 | Msa1217210 | 0.822778 | 1.974247e-53 | -8.615850e-47 |
| Msa0526420 | Msa1218550 | 0.836425 | 9.429951e-57 | -8.615850e-47 |
| Msa0526420 | Msa1225700 | 0.822884 | 1.865564e-53 | -8.615850e-47 |
| Msa0526420 | Msa1251160 | 0.818551 | 1.847899e-52 | -8.615850e-47 |
| Msa0526420 | Msa1271990 | 0.803570 | 3.273254e-49 | -8.615850e-47 |
| Msa0526420 | Msa1306340 | 0.953570 | 2.049021e-111 | -8.615850e-47 |
| Msa0526420 | Msa1374060 | 0.814483 | 1.505808e-51 | -8.615850e-47 |
| Msa0526420 | Msa1381350 | 0.804362 | 2.240119e-49 | -8.615850e-47 |
| Msa0526420 | Msa1382560 | 0.817180 | 3.770199e-52 | -8.615850e-47 |
| Msa0526420 | Msa1413690 | 0.805239 | 1.469510e-49 | -8.615850e-47 |
| Msa0526420 | Msa1414170 | 0.807726 | 4.391818e-50 | -8.615850e-47 |
| Msa0526420 | Msa1436570 | 0.837981 | 3.771434e-57 | -8.615850e-47 |
| Msa0526420 | Msa1440880 | 0.809275 | 2.050488e-50 | -8.615850e-47 |
| Msa0526420 | Msa1443300 | 0.811180 | 7.965492e-51 | -8.615850e-47 |
| Msa0526420 | Msa1446810 | 0.845847 | 3.145655e-59 | -8.615850e-47 |
| Msa0526420 | Msa1451160 | 0.818243 | 2.170019e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526420 | MtrunA17_Chr8g0387211 | 97.208 | 573 | 16 | 0 | 1 | 573 | 1 | 573 | 0.0 | 1154 |
| Msa0526420 | MtrunA17_Chr4g0048391 | 83.559 | 590 | 76 | 3 | 1 | 573 | 3 | 588 | 0.0 | 1011 |
| Msa0526420 | MtrunA17_Chr1g0196061 | 52.807 | 570 | 260 | 2 | 9 | 573 | 16 | 581 | 0.0 | 637 |
| Msa0526420 | MtrunA17_Chr7g0251831 | 55.148 | 573 | 242 | 5 | 9 | 573 | 6 | 571 | 0.0 | 637 |
| Msa0526420 | MtrunA17_Chr5g0427061 | 49.825 | 572 | 272 | 6 | 9 | 573 | 53 | 616 | 0.0 | 547 |
| Msa0526420 | MtrunA17_Chr3g0133241 | 49.303 | 574 | 275 | 6 | 11 | 573 | 25 | 593 | 0.0 | 545 |
| Msa0526420 | MtrunA17_Chr5g0436511 | 32.657 | 591 | 357 | 15 | 6 | 573 | 10 | 582 | 2.75e-94 | 300 |
| Msa0526420 | MtrunA17_Chr3g0113151 | 30.252 | 595 | 373 | 11 | 6 | 573 | 14 | 593 | 7.96e-80 | 262 |
| Msa0526420 | MtrunA17_Chr8g0364131 | 29.038 | 551 | 318 | 15 | 31 | 567 | 9 | 500 | 2.70e-59 | 205 |
| Msa0526420 | MtrunA17_Chr5g0439771 | 51.456 | 103 | 45 | 1 | 35 | 132 | 17 | 119 | 1.75e-28 | 110 |
| Msa0526420 | MtrunA17_Chr2g0286991 | 22.711 | 546 | 324 | 14 | 9 | 536 | 13 | 478 | 1.16e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0526420 | AT3G62980.1 | 55.614 | 570 | 244 | 2 | 9 | 573 | 11 | 576 | 0.0 | 632 |
| Msa0526420 | AT1G12820.1 | 52.405 | 582 | 250 | 5 | 9 | 573 | 6 | 577 | 0.0 | 620 |
| Msa0526420 | AT3G26810.1 | 53.913 | 575 | 250 | 5 | 9 | 573 | 6 | 575 | 0.0 | 619 |
| Msa0526420 | AT4G03190.1 | 53.147 | 572 | 260 | 3 | 6 | 573 | 4 | 571 | 0.0 | 613 |
| Msa0526420 | AT4G24390.2 | 49.739 | 575 | 272 | 6 | 9 | 573 | 56 | 623 | 0.0 | 565 |
| Msa0526420 | AT4G24390.1 | 49.739 | 575 | 272 | 6 | 9 | 573 | 56 | 623 | 0.0 | 565 |
| Msa0526420 | AT5G49980.1 | 49.209 | 569 | 280 | 5 | 9 | 573 | 56 | 619 | 0.0 | 548 |
| Msa0526420 | AT2G39940.1 | 31.472 | 591 | 369 | 12 | 4 | 573 | 13 | 588 | 2.45e-98 | 311 |
| Msa0526420 | AT4G15475.1 | 23.339 | 557 | 323 | 22 | 9 | 493 | 13 | 537 | 3.91e-21 | 97.8 |
| Msa0526420 | AT5G25350.1 | 27.542 | 236 | 127 | 10 | 315 | 519 | 166 | 388 | 7.72e-12 | 68.6 |
Find 151 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACACCCTTTCTGGTTTA+TGG | 0.078775 | 3_4:-80267683 | Msa0526420:CDS |
| TCCAATGATGTAAAGCTTTC+TGG | 0.097724 | 3_4:+80267945 | None:intergenic |
| TCAACTTGGTTCCTGAAAAT+TGG | 0.125267 | 3_4:-80269099 | Msa0526420:CDS |
| AAGAGTCTTCACACCCTTTC+TGG | 0.147620 | 3_4:-80267690 | Msa0526420:CDS |
| CTCCAAAGGCTTTCTGTATC+AGG | 0.215148 | 3_4:-80267064 | Msa0526420:CDS |
| TCACACCCTTTCTGGTTTAT+GGG | 0.221558 | 3_4:-80267682 | Msa0526420:CDS |
| TTCCATCAAGTTCCATGTTT+TGG | 0.222745 | 3_4:-80269513 | Msa0526420:five_prime_UTR |
| CAACTTGGTTCCTGAAAATT+GGG | 0.247042 | 3_4:-80269098 | Msa0526420:CDS |
| GTTGAATGTTGAAGTAATTA+AGG | 0.252910 | 3_4:-80266768 | Msa0526420:CDS |
| CCTTGGAATGTGACCGTATA+TGG | 0.262480 | 3_4:-80266226 | Msa0526420:three_prime_UTR |
| CAACAACACAACATTGTAAT+TGG | 0.262838 | 3_4:+80269681 | None:intergenic |
| GTCCTGACTTCACTCATTTC+CGG | 0.265535 | 3_4:-80267177 | Msa0526420:CDS |
| GTCCTAATCTTCGGCGCCTT+TGG | 0.274559 | 3_4:-80267533 | Msa0526420:CDS |
| TCCTAATCTTCGGCGCCTTT+GGG | 0.278407 | 3_4:-80267532 | Msa0526420:intron |
| CGATATTTACATCATTGTTT+AGG | 0.287424 | 3_4:+80267904 | None:intergenic |
| GTCAGGTAATCTGGCTGATT+AGG | 0.288888 | 3_4:+80267139 | None:intergenic |
| GACCTCGCATTTGAGTATTT+AGG | 0.296175 | 3_4:-80267031 | Msa0526420:CDS |
| TCAGGTAATCTGGCTGATTA+GGG | 0.296950 | 3_4:+80267140 | None:intergenic |
| ATGCAAGTGTCCATTGTAAA+TGG | 0.297989 | 3_4:-80266002 | Msa0526420:three_prime_UTR |
| ACCTCGCATTTGAGTATTTA+GGG | 0.305990 | 3_4:-80267030 | Msa0526420:CDS |
| TATGTTTATCGTTCTGTTGC+CGG | 0.306416 | 3_4:-80266710 | Msa0526420:CDS |
| GGTTCATTTGTCAGGTAATC+TGG | 0.309160 | 3_4:+80267130 | None:intergenic |
| ACAATGAAGCCTCAGTAATA+TGG | 0.313485 | 3_4:-80266187 | Msa0526420:three_prime_UTR |
| AGTGTAACACTTCTTATGTT+TGG | 0.320668 | 3_4:+80269148 | None:intergenic |
| GAAATATGTTTGTCTCTTCC+AGG | 0.328855 | 3_4:+80265864 | None:intergenic |
| CTAACTTTAAACTACCCTTT+TGG | 0.330991 | 3_4:+80269387 | None:intergenic |
| AATGGAGGGGCATCCCTTCT+TGG | 0.338658 | 3_4:+80266686 | None:intergenic |
| TTGACGAGGGTGTTGTGCAC+GGG | 0.346978 | 3_4:-80267312 | Msa0526420:CDS |
| CAATTACAATGTTGTGTTGT+TGG | 0.349096 | 3_4:-80269680 | Msa0526420:five_prime_UTR |
| TCCAGAAAGCTTTACATCAT+TGG | 0.349988 | 3_4:-80267946 | Msa0526420:CDS |
| CTTGCCTTCTTTCAACTAGT+TGG | 0.351212 | 3_4:-80266042 | Msa0526420:three_prime_UTR |
| TAAATCTTACTTGCAATTAG+TGG | 0.351338 | 3_4:+80268889 | None:intergenic |
| GAAGTGTTGAAACAAGTTCT+TGG | 0.355603 | 3_4:-80269310 | Msa0526420:CDS |
| GGGATGCAGTCTGTACTTGC+TGG | 0.363431 | 3_4:-80266950 | Msa0526420:CDS |
| TTGCCGGAAGCAGTGACTTT+GGG | 0.371104 | 3_4:-80266970 | Msa0526420:CDS |
| TTGCCTTCTTTCAACTAGTT+GGG | 0.371284 | 3_4:-80266041 | Msa0526420:three_prime_UTR |
| ATTACTGAGGCTTCATTGTC+AGG | 0.371423 | 3_4:+80266191 | None:intergenic |
| TTGTTCATTGTCCTAATCTT+CGG | 0.380170 | 3_4:-80267542 | Msa0526420:CDS |
| GTGCACGGGGTTACTGAATC+AGG | 0.384151 | 3_4:-80267298 | Msa0526420:CDS |
| CATCCATAGGTTCATTTGTC+AGG | 0.387955 | 3_4:+80267122 | None:intergenic |
| CATCCCAAAGTCACTGCTTC+CGG | 0.404250 | 3_4:+80266967 | None:intergenic |
| GCTGAGAAAACTTGAGATAA+GGG | 0.404897 | 3_4:-80266918 | Msa0526420:CDS |
| GAACCTATGGATGAGGCCTT+TGG | 0.408205 | 3_4:-80267112 | Msa0526420:CDS |
| GCCCCTCAGTTATGTGAGCT+TGG | 0.420842 | 3_4:-80267783 | Msa0526420:CDS |
| GACACTTGCATTATTTCTCT+TGG | 0.421671 | 3_4:+80266014 | None:intergenic |
| AGAAGGAAGCGATGATAGTC+AGG | 0.422000 | 3_4:-80266744 | Msa0526420:CDS |
| ATGGAGGGGCATCCCTTCTT+GGG | 0.423321 | 3_4:+80266687 | None:intergenic |
| AGCCTCAACTCCTCAAGAAA+AGG | 0.428352 | 3_4:+80269031 | None:intergenic |
| TTGAATTGAAATATTTATCC+TGG | 0.432612 | 3_4:-80265882 | Msa0526420:three_prime_UTR |
| GAAGAAGAGTGATGATGATA+AGG | 0.433314 | 3_4:+80269609 | None:intergenic |
| CCTGCAGATCCCTTTGACGA+GGG | 0.434417 | 3_4:-80267325 | Msa0526420:CDS |
| TTTCAGAGAGTGAGAACAAA+TGG | 0.440221 | 3_4:+80266668 | None:intergenic |
| ACCCAAAGGCGCCGAAGATT+AGG | 0.441045 | 3_4:+80267531 | None:intergenic |
| TGTTGTTGTGTTGTTGAACA+TGG | 0.441429 | 3_4:-80269356 | Msa0526420:exon |
| TTTGCCGGAAGCAGTGACTT+TGG | 0.444477 | 3_4:-80266971 | Msa0526420:CDS |
| GCCATTGATTGTTGTTGTGT+TGG | 0.448430 | 3_4:-80266109 | Msa0526420:three_prime_UTR |
| CAAATCATTGAAGACTTTGA+AGG | 0.450196 | 3_4:-80267853 | Msa0526420:CDS |
| CCCTCGTCAAAGGGATCTGC+AGG | 0.450415 | 3_4:+80267325 | None:intergenic |
| GATGCCAACTTTGCCATATA+CGG | 0.454128 | 3_4:+80266213 | None:intergenic |
| ACTTGCATTATTTCTCTTGG+TGG | 0.460932 | 3_4:+80266017 | None:intergenic |
| GGGGTGCTGATATTCATTCA+TGG | 0.461105 | 3_4:-80269078 | Msa0526420:CDS |
| TACCAAAACATGGAACTTGA+TGG | 0.461282 | 3_4:+80269511 | None:intergenic |
| TTTGACGAGGGTGTTGTGCA+CGG | 0.461850 | 3_4:-80267313 | Msa0526420:CDS |
| AACCTGATACAGAAAGCCTT+TGG | 0.463742 | 3_4:+80267062 | None:intergenic |
| CTTTCTCTGCTGAGCTGTGA+AGG | 0.465139 | 3_4:-80268941 | Msa0526420:CDS |
| AGCTGAGAAAACTTGAGATA+AGG | 0.465986 | 3_4:-80266919 | Msa0526420:CDS |
| TACATCCATTCATTGTTACT+TGG | 0.471398 | 3_4:+80266816 | None:intergenic |
| AATCTACTTGTCAAGATCTC+AGG | 0.472486 | 3_4:+80269172 | None:intergenic |
| TGCTGATATTCATTCATGGT+TGG | 0.476550 | 3_4:-80269074 | Msa0526420:CDS |
| AGGGGCATCCCTTCTTGGGC+CGG | 0.481810 | 3_4:+80266691 | None:intergenic |
| AGGATTTAGCACTGATGGCT+TGG | 0.482352 | 3_4:-80268921 | Msa0526420:CDS |
| GACTGCCAAGTAACAATGAA+TGG | 0.488206 | 3_4:-80266821 | Msa0526420:CDS |
| ACCAACACAACAACAATCAA+TGG | 0.488230 | 3_4:+80266108 | None:intergenic |
| AAGCCTTTGGAGTTTAGTGC+AGG | 0.488319 | 3_4:+80267075 | None:intergenic |
| CCATATACGGTCACATTCCA+AGG | 0.490187 | 3_4:+80266226 | None:intergenic |
| AGAGGACGTAGTGAAGCTTC+CGG | 0.490890 | 3_4:+80267251 | None:intergenic |
| GGAGTTGAGGCTCAAGAGAA+TGG | 0.491782 | 3_4:-80269020 | Msa0526420:CDS |
| GTTGAAGTAATTAAGGAAGA+AGG | 0.492228 | 3_4:-80266761 | Msa0526420:CDS |
| CAGTTATGTGAGCTTGGCAG+TGG | 0.493794 | 3_4:-80267777 | Msa0526420:CDS |
| ATAAGAAGTGTTACACTCAA+AGG | 0.496754 | 3_4:-80269142 | Msa0526420:CDS |
| CACCCTTTCTGGTTTATGGG+TGG | 0.500938 | 3_4:-80267679 | Msa0526420:CDS |
| GTGCACAACACCCTCGTCAA+AGG | 0.501470 | 3_4:+80267315 | None:intergenic |
| TGCACAACACCCTCGTCAAA+GGG | 0.502790 | 3_4:+80267316 | None:intergenic |
| GAGATAAGGGACTGTCCATT+CGG | 0.505837 | 3_4:-80266905 | Msa0526420:CDS |
| GATGCGCTTGAGAAACTTGT+CGG | 0.507130 | 3_4:-80267882 | Msa0526420:CDS |
| TAAGAAGTGTTACACTCAAA+GGG | 0.508033 | 3_4:-80269141 | Msa0526420:CDS |
| TCGATGACAAAAGCGGTGAT+TGG | 0.508436 | 3_4:-80267980 | Msa0526420:CDS |
| CAGAGTATAGAACTTGAAGT+TGG | 0.510227 | 3_4:+80267634 | None:intergenic |
| AGCCGGAAATGAGTGAAGTC+AGG | 0.516302 | 3_4:+80267175 | None:intergenic |
| TTACCTGACAAATGAACCTA+TGG | 0.517098 | 3_4:-80267125 | Msa0526420:CDS |
| AACAATCAATGGCTACATGA+TGG | 0.520965 | 3_4:+80266119 | None:intergenic |
| GTTCTGTTGCCGGCCCAAGA+AGG | 0.525623 | 3_4:-80266700 | Msa0526420:CDS |
| ATTCTCTTGTATGTCAAGCT+CGG | 0.532804 | 3_4:+80268007 | None:intergenic |
| TGTGAAGGATTTAGCACTGA+TGG | 0.534547 | 3_4:-80268926 | Msa0526420:CDS |
| TTCTGTTGCCGGCCCAAGAA+GGG | 0.535830 | 3_4:-80266699 | Msa0526420:CDS |
| GTGACCGTATATGGCAAAGT+TGG | 0.535910 | 3_4:-80266217 | Msa0526420:three_prime_UTR |
| GCTCCAAAGGCCTCATCCAT+AGG | 0.536354 | 3_4:+80267109 | None:intergenic |
| GCCTCAACTCCTCAAGAAAA+GGG | 0.537412 | 3_4:+80269032 | None:intergenic |
| TTGCTGTCTCTGAAGGATGC+CGG | 0.538728 | 3_4:-80267270 | Msa0526420:CDS |
| AGCCACCCATAAACCAGAAA+GGG | 0.542673 | 3_4:+80267677 | None:intergenic |
| TAGGGGTCATGATGCAGAGC+CGG | 0.545042 | 3_4:+80267158 | None:intergenic |
| GGTCTTAACAACTGCTCCAA+AGG | 0.546055 | 3_4:+80267096 | None:intergenic |
| ATCATATTGTCCATTGCTTG+AGG | 0.546358 | 3_4:-80267362 | Msa0526420:CDS |
| CAGCATCATTTGTCATCTGA+TGG | 0.546732 | 3_4:+80267221 | None:intergenic |
| TCCTGCAGATCCCTTTGACG+AGG | 0.555334 | 3_4:-80267326 | Msa0526420:CDS |
| CACAGTTGAAGACAAGGGAC+TGG | 0.558137 | 3_4:-80267395 | Msa0526420:CDS |
| CCTACACTTTGAAGCTCAAG+AGG | 0.559487 | 3_4:-80266632 | Msa0526420:intron |
| TTAATGAAGAGATCTAGAAA+AGG | 0.561940 | 3_4:+80269557 | None:intergenic |
| GACAAGGGACTGGAAGCTGT+TGG | 0.564143 | 3_4:-80267385 | Msa0526420:CDS |
| ACGTTTCTCTGACTTCAACT+TGG | 0.564927 | 3_4:-80269113 | Msa0526420:CDS |
| CCTCTTGAGCTTCAAAGTGT+AGG | 0.568176 | 3_4:+80266632 | None:intergenic |
| AAACTTGGAAACGCTTTCAG+TGG | 0.570395 | 3_4:-80266996 | Msa0526420:CDS |
| GGACCCAACTAGTTGAAAGA+AGG | 0.570671 | 3_4:+80266038 | None:intergenic |
| ATGAGTCAATGAGATCACTT+TGG | 0.571140 | 3_4:-80266850 | Msa0526420:CDS |
| TGACGAGGGTGTTGTGCACG+GGG | 0.571274 | 3_4:-80267311 | Msa0526420:CDS |
| CTTGGTTGCATACCAAAACA+TGG | 0.574910 | 3_4:+80269501 | None:intergenic |
| AATGAGATCACTTTGGATGT+CGG | 0.575734 | 3_4:-80266843 | Msa0526420:CDS |
| AAGCCACCCATAAACCAGAA+AGG | 0.576681 | 3_4:+80267676 | None:intergenic |
| TTCCACCTTCCATATTACTG+AGG | 0.577064 | 3_4:+80266178 | None:intergenic |
| GACAAATGAACCTATGGATG+AGG | 0.578886 | 3_4:-80267119 | Msa0526420:CDS |
| ATTACTTCAACATTCAACCT+CGG | 0.585805 | 3_4:+80266773 | None:intergenic |
| AGAGTGATGATGATAAGGAA+AGG | 0.586070 | 3_4:+80269614 | None:intergenic |
| ACACGTAGCTCCTCAAGCAA+TGG | 0.587975 | 3_4:+80267352 | None:intergenic |
| TCATCTGATGGCAAAAGTAG+AGG | 0.589318 | 3_4:+80267233 | None:intergenic |
| TTTCTTTAGTTTGCAAACAG+TGG | 0.597043 | 3_4:-80269255 | Msa0526420:CDS |
| TGTTGTGTTGTTGGACAACA+AGG | 0.597948 | 3_4:-80269671 | Msa0526420:five_prime_UTR |
| AAAAGTGCTGCATCGCCGAA+TGG | 0.606996 | 3_4:+80266890 | None:intergenic |
| CAGAGAGTGAGAACAAATGG+AGG | 0.612840 | 3_4:+80266671 | None:intergenic |
| AGCCTCAGTAATATGGAAGG+TGG | 0.616841 | 3_4:-80266180 | Msa0526420:three_prime_UTR |
| TGCCAAGCTCACATAACTGA+GGG | 0.617421 | 3_4:+80267781 | None:intergenic |
| CGCTTGAGAAACTTGTCGGT+AGG | 0.619571 | 3_4:-80267878 | Msa0526420:CDS |
| AACTTGGTTCCTGAAAATTG+GGG | 0.622806 | 3_4:-80269097 | Msa0526420:CDS |
| AGAGAGTGAGAACAAATGGA+GGG | 0.623048 | 3_4:+80266672 | None:intergenic |
| AAAACATGGAACTTGATGGA+AGG | 0.624501 | 3_4:+80269515 | None:intergenic |
| TCCCTAAATACTCAAATGCG+AGG | 0.626376 | 3_4:+80267029 | None:intergenic |
| TGAAGCCTCAGTAATATGGA+AGG | 0.626705 | 3_4:-80266183 | Msa0526420:three_prime_UTR |
| TCAGTAATATGGAAGGTGGA+AGG | 0.628553 | 3_4:-80266176 | Msa0526420:three_prime_UTR |
| TGTTGTGTTGTTGAACATGG+AGG | 0.632665 | 3_4:-80269353 | Msa0526420:exon |
| TGTTAGCAAAAGAAAAGCCG+AGG | 0.639572 | 3_4:-80266790 | Msa0526420:CDS |
| CAGGTAATCTGGCTGATTAG+GGG | 0.642566 | 3_4:+80267141 | None:intergenic |
| TGTAGACACAGTTGAAGACA+AGG | 0.644710 | 3_4:-80267401 | Msa0526420:CDS |
| AGACCTGCACTAAACTCCAA+AGG | 0.647440 | 3_4:-80267078 | Msa0526420:CDS |
| AATGACATCGATGACAAAAG+CGG | 0.649581 | 3_4:-80267987 | Msa0526420:CDS |
| CTGCCAAGCTCACATAACTG+AGG | 0.656866 | 3_4:+80267780 | None:intergenic |
| GCTCACATAACTGAGGGGCA+AGG | 0.682791 | 3_4:+80267787 | None:intergenic |
| ACAACGCTGAAAGATTGTCA+AGG | 0.689288 | 3_4:-80269231 | Msa0526420:CDS |
| GAGAGTGAGAACAAATGGAG+GGG | 0.695193 | 3_4:+80266673 | None:intergenic |
| ACGCTGAAAGATTGTCAAGG+AGG | 0.697851 | 3_4:-80269228 | Msa0526420:CDS |
| GCCAAGCTCACATAACTGAG+GGG | 0.733620 | 3_4:+80267782 | None:intergenic |
| GTAGACACAGTTGAAGACAA+GGG | 0.743765 | 3_4:-80267400 | Msa0526420:CDS |
| AAGTTGAAGTCAGAGAAACG+TGG | 0.761191 | 3_4:+80269115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAAATGTGATTTAAT+AGG | - | chr3_4:80267258-80267277 | Msa0526420:CDS | 10.0% |
| !! | AATTAAAATGTGATTTAATA+GGG | - | chr3_4:80267259-80267278 | Msa0526420:CDS | 10.0% |
| !!! | ACAAAAAGTTTTTTAATTTT+AGG | - | chr3_4:80269597-80269616 | Msa0526420:five_prime_UTR | 10.0% |
| !!! | CAAAAAGTTTTTTAATTTTA+GGG | - | chr3_4:80269598-80269617 | Msa0526420:five_prime_UTR | 10.0% |
| !!! | AAAAAGTTTTTTAATTTTAG+GGG | - | chr3_4:80269599-80269618 | Msa0526420:five_prime_UTR | 10.0% |
| !! | AAAAAAAAAAATCTCCAAAA+GGG | - | chr3_4:80266145-80266164 | Msa0526420:three_prime_UTR | 15.0% |
| !! | CAATAAATACTGATATATTT+AGG | + | chr3_4:80266791-80266810 | None:intergenic | 15.0% |
| !! | TAAATCAATCTATGAATTAA+TGG | + | chr3_4:80266978-80266997 | None:intergenic | 15.0% |
| !!! | AATTCATAGATTGATTTATT+AGG | - | chr3_4:80266980-80266999 | Msa0526420:CDS | 15.0% |
| !!! | ATTTTAATTATGTAACAATG+AGG | + | chr3_4:80267248-80267267 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAATCTCCAAA+AGG | - | chr3_4:80266144-80266163 | Msa0526420:three_prime_UTR | 20.0% |
| !!! | ATGTAAATATTTTATGCCAA+CGG | + | chr3_4:80267054-80267073 | None:intergenic | 20.0% |
| !!! | CTTTTTAAGATTCTTAAGTA+AGG | - | chr3_4:80267112-80267131 | Msa0526420:CDS | 20.0% |
| !! | TTTGAAAATTTGGTATTACT+TGG | - | chr3_4:80267469-80267488 | Msa0526420:intron | 20.0% |
| !!! | AAAGAATGATGAAAATGTTT+TGG | - | chr3_4:80268102-80268121 | Msa0526420:intron | 20.0% |
| !! | ACTTCTTAGTCTAATTAATT+GGG | + | chr3_4:80269034-80269053 | None:intergenic | 20.0% |
| !! | GTTGATTGGTAAAAAAATAA+TGG | - | chr3_4:80269096-80269115 | Msa0526420:CDS | 20.0% |
| !! | AAAGTAAAGTGACAAATAAT+TGG | + | chr3_4:80269238-80269257 | None:intergenic | 20.0% |
| !! | TTGAATTGAAATATTTATCC+TGG | - | chr3_4:80269664-80269683 | Msa0526420:five_prime_UTR | 20.0% |
| ! | TTAATGAAGAGATCTAGAAA+AGG | + | chr3_4:80265992-80266011 | None:intergenic | 25.0% |
| !! | ACTGAAAATTTTGAATGCAA+AGG | + | chr3_4:80266073-80266092 | None:intergenic | 25.0% |
| ! | TAAATCTTACTTGCAATTAG+TGG | + | chr3_4:80266660-80266679 | None:intergenic | 25.0% |
| !!! | TTGCATTGTTTTTCATTTAC+TGG | - | chr3_4:80266925-80266944 | Msa0526420:CDS | 25.0% |
| ! | ATTAGGATTCACTAAAATAC+AGG | - | chr3_4:80266997-80267016 | Msa0526420:CDS | 25.0% |
| !!! | GTTTAATTTTGATATACCGT+TGG | - | chr3_4:80267035-80267054 | Msa0526420:CDS | 25.0% |
| !!! | GTTTTTTGCACATATTCAAT+TGG | + | chr3_4:80267093-80267112 | None:intergenic | 25.0% |
| ! | TATCAATCAATTATAATCGC+CGG | + | chr3_4:80267156-80267175 | None:intergenic | 25.0% |
| ! | TGAATCCATATAAATACTTG+TGG | - | chr3_4:80267211-80267230 | Msa0526420:CDS | 25.0% |
| ! | AAGTTCCACAAGTATTTATA+TGG | + | chr3_4:80267219-80267238 | None:intergenic | 25.0% |
| ! | ATCATATATGCAGTACTTAA+AGG | + | chr3_4:80267316-80267335 | None:intergenic | 25.0% |
| ! | ACTGCATATATGATTATCTT+TGG | - | chr3_4:80267322-80267341 | Msa0526420:CDS | 25.0% |
| ! | TATCGAGTGATTTGAAAATT+TGG | - | chr3_4:80267459-80267478 | Msa0526420:intron | 25.0% |
| ! | AATTTGGTATTACTTGGATT+TGG | - | chr3_4:80267475-80267494 | Msa0526420:intron | 25.0% |
| ! | ATCATCTTCTGAATATTACA+TGG | - | chr3_4:80267502-80267521 | Msa0526420:intron | 25.0% |
| ! | CGATATTTACATCATTGTTT+AGG | + | chr3_4:80267645-80267664 | None:intergenic | 25.0% |
| ! | ATAAAGAAAATCATACCCAA+AGG | + | chr3_4:80268032-80268051 | None:intergenic | 25.0% |
| ! | GTTGAATGTTGAAGTAATTA+AGG | - | chr3_4:80268778-80268797 | Msa0526420:intron | 25.0% |
| !! | AGTCTAATTAATTGGGTTTT+GGG | + | chr3_4:80269027-80269046 | None:intergenic | 25.0% |
| !! | TAGTCTAATTAATTGGGTTT+TGG | + | chr3_4:80269028-80269047 | None:intergenic | 25.0% |
| ! | CACTTCTTAGTCTAATTAAT+TGG | + | chr3_4:80269035-80269054 | None:intergenic | 25.0% |
| ! | TATTATATGATTCTGCTCTT+TGG | - | chr3_4:80269063-80269082 | Msa0526420:CDS | 25.0% |
| ! | TTGGAAAACAAATTGTTGAT+TGG | - | chr3_4:80269082-80269101 | Msa0526420:CDS | 25.0% |
| !!! | ATTTTTCATGCCATTTACAA+TGG | + | chr3_4:80269557-80269576 | None:intergenic | 25.0% |
| CAACAACACAACATTGTAAT+TGG | + | chr3_4:80265868-80265887 | None:intergenic | 30.0% | |
| CAATTACAATGTTGTGTTGT+TGG | - | chr3_4:80265866-80265885 | Msa0526420:three_prime_UTR | 30.0% | |
| !!! | ATTTTGAATGCAAAGGTACT+TGG | + | chr3_4:80266066-80266085 | None:intergenic | 30.0% |
| ! | CTAACTTTAAACTACCCTTT+TGG | + | chr3_4:80266162-80266181 | None:intergenic | 30.0% |
| !! | TTTCTTTAGTTTGCAAACAG+TGG | - | chr3_4:80266291-80266310 | Msa0526420:intron | 30.0% |
| AGTGTAACACTTCTTATGTT+TGG | + | chr3_4:80266401-80266420 | None:intergenic | 30.0% | |
| !! | ATAAGAAGTGTTACACTCAA+AGG | - | chr3_4:80266404-80266423 | Msa0526420:intron | 30.0% |
| !! | TAAGAAGTGTTACACTCAAA+GGG | - | chr3_4:80266405-80266424 | Msa0526420:intron | 30.0% |
| !! | TGATGAGAGTTTAGAGTTTT+TGG | - | chr3_4:80266556-80266575 | Msa0526420:intron | 30.0% |
| AGTTGTGTGTGAATTTCAAT+TGG | + | chr3_4:80266730-80266749 | None:intergenic | 30.0% | |
| AATGAAAAACAATGCAAACC+AGG | + | chr3_4:80266922-80266941 | None:intergenic | 30.0% | |
| ! | GACAAGCATTTTTAATGATC+CGG | - | chr3_4:80267134-80267153 | Msa0526420:CDS | 30.0% |
| CAAATCATTGAAGACTTTGA+AGG | - | chr3_4:80267693-80267712 | Msa0526420:CDS | 30.0% | |
| TTGTTCATTGTCCTAATCTT+CGG | - | chr3_4:80268004-80268023 | Msa0526420:CDS | 30.0% | |
| TTGGAACATCTACATTATAC+AGG | - | chr3_4:80268121-80268140 | Msa0526420:intron | 30.0% | |
| TACATCCATTCATTGTTACT+TGG | + | chr3_4:80268733-80268752 | None:intergenic | 30.0% | |
| ATTACTTCAACATTCAACCT+CGG | + | chr3_4:80268776-80268795 | None:intergenic | 30.0% | |
| GTTGAAGTAATTAAGGAAGA+AGG | - | chr3_4:80268785-80268804 | Msa0526420:intron | 30.0% | |
| TGGTAAAAAAATAATGGCCT+TGG | - | chr3_4:80269102-80269121 | Msa0526420:CDS | 30.0% | |
| ! | AGTGGAAACATCACTATTTT+TGG | - | chr3_4:80269137-80269156 | Msa0526420:CDS | 30.0% |
| !! | GTGGAAACATCACTATTTTT+GGG | - | chr3_4:80269138-80269157 | Msa0526420:CDS | 30.0% |
| !!! | GCATCATCAACTTTTTCAAA+TGG | - | chr3_4:80269182-80269201 | Msa0526420:CDS | 30.0% |
| !! | TAATTTTAGGGGATCATGTT+AGG | - | chr3_4:80269610-80269629 | Msa0526420:five_prime_UTR | 30.0% |
| ! | AGAGTGATGATGATAAGGAA+AGG | + | chr3_4:80265935-80265954 | None:intergenic | 35.0% |
| ! | GAAGAAGAGTGATGATGATA+AGG | + | chr3_4:80265940-80265959 | None:intergenic | 35.0% |
| AAAACATGGAACTTGATGGA+AGG | + | chr3_4:80266034-80266053 | None:intergenic | 35.0% | |
| ! | TTCCATCAAGTTCCATGTTT+TGG | - | chr3_4:80266033-80266052 | Msa0526420:three_prime_UTR | 35.0% |
| TACCAAAACATGGAACTTGA+TGG | + | chr3_4:80266038-80266057 | None:intergenic | 35.0% | |
| ! | TGTTGTTGTGTTGTTGAACA+TGG | - | chr3_4:80266190-80266209 | Msa0526420:three_prime_UTR | 35.0% |
| !! | GAAGTGTTGAAACAAGTTCT+TGG | - | chr3_4:80266236-80266255 | Msa0526420:intron | 35.0% |
| ! | TCAAGGAGGAATGTTTTCAT+AGG | - | chr3_4:80266332-80266351 | Msa0526420:intron | 35.0% |
| AATCTACTTGTCAAGATCTC+AGG | + | chr3_4:80266377-80266396 | None:intergenic | 35.0% | |
| TCAACTTGGTTCCTGAAAAT+TGG | - | chr3_4:80266447-80266466 | Msa0526420:intron | 35.0% | |
| CAACTTGGTTCCTGAAAATT+GGG | - | chr3_4:80266448-80266467 | Msa0526420:intron | 35.0% | |
| AACTTGGTTCCTGAAAATTG+GGG | - | chr3_4:80266449-80266468 | Msa0526420:intron | 35.0% | |
| TGCTGATATTCATTCATGGT+TGG | - | chr3_4:80266472-80266491 | Msa0526420:intron | 35.0% | |
| !!! | TGAAAAGTACCCTTTTCTTG+AGG | - | chr3_4:80266505-80266524 | Msa0526420:intron | 35.0% |
| TAGGACAAGGATTCTCTAAT+TGG | + | chr3_4:80266859-80266878 | None:intergenic | 35.0% | |
| !! | GCTAAGATTTGTTGTCTGTA+TGG | - | chr3_4:80266893-80266912 | Msa0526420:CDS | 35.0% |
| TCTGAATATTACATGGATGC+AGG | - | chr3_4:80267509-80267528 | Msa0526420:intron | 35.0% | |
| ATTCTCTTGTATGTCAAGCT+CGG | + | chr3_4:80267542-80267561 | None:intergenic | 35.0% | |
| AATGACATCGATGACAAAAG+CGG | - | chr3_4:80267559-80267578 | Msa0526420:CDS | 35.0% | |
| TCCAGAAAGCTTTACATCAT+TGG | - | chr3_4:80267600-80267619 | Msa0526420:CDS | 35.0% | |
| TCCAATGATGTAAAGCTTTC+TGG | + | chr3_4:80267604-80267623 | None:intergenic | 35.0% | |
| CAGAGTATAGAACTTGAAGT+TGG | + | chr3_4:80267915-80267934 | None:intergenic | 35.0% | |
| ATCATATTGTCCATTGCTTG+AGG | - | chr3_4:80268184-80268203 | Msa0526420:intron | 35.0% | |
| TTACCTGACAAATGAACCTA+TGG | - | chr3_4:80268421-80268440 | Msa0526420:intron | 35.0% | |
| ACCTCGCATTTGAGTATTTA+GGG | - | chr3_4:80268516-80268535 | Msa0526420:intron | 35.0% | |
| !!! | TGAAAGCGTTTCCAAGTTTT+TGG | + | chr3_4:80268549-80268568 | None:intergenic | 35.0% |
| ! | ATCTCAAGTTTTCTCAGCTT+CGG | + | chr3_4:80268626-80268645 | None:intergenic | 35.0% |
| AGCTGAGAAAACTTGAGATA+AGG | - | chr3_4:80268627-80268646 | Msa0526420:intron | 35.0% | |
| GCTGAGAAAACTTGAGATAA+GGG | - | chr3_4:80268628-80268647 | Msa0526420:intron | 35.0% | |
| ATGAGTCAATGAGATCACTT+TGG | - | chr3_4:80268696-80268715 | Msa0526420:intron | 35.0% | |
| AATGAGATCACTTTGGATGT+CGG | - | chr3_4:80268703-80268722 | Msa0526420:intron | 35.0% | |
| TATGTTTATCGTTCTGTTGC+CGG | - | chr3_4:80268836-80268855 | Msa0526420:intron | 35.0% | |
| TTTCAGAGAGTGAGAACAAA+TGG | + | chr3_4:80268881-80268900 | None:intergenic | 35.0% | |
| ATTGAAATGTGCATGCCATA+TGG | - | chr3_4:80268984-80269003 | Msa0526420:CDS | 35.0% | |
| ! | ATAATTTTGTGTTGCAGCCT+TGG | - | chr3_4:80269303-80269322 | Msa0526420:CDS | 35.0% |
| ACAATGAAGCCTCAGTAATA+TGG | - | chr3_4:80269359-80269378 | Msa0526420:exon | 35.0% | |
| AAGGTGGAAGGAAGAAAAAT+AGG | - | chr3_4:80269382-80269401 | Msa0526420:five_prime_UTR | 35.0% | |
| AGGTGGAAGGAAGAAAAATA+GGG | - | chr3_4:80269383-80269402 | Msa0526420:five_prime_UTR | 35.0% | |
| AACAATCAATGGCTACATGA+TGG | + | chr3_4:80269430-80269449 | None:intergenic | 35.0% | |
| ACCAACACAACAACAATCAA+TGG | + | chr3_4:80269441-80269460 | None:intergenic | 35.0% | |
| TTGCCTTCTTTCAACTAGTT+GGG | - | chr3_4:80269505-80269524 | Msa0526420:five_prime_UTR | 35.0% | |
| ! | ACTTGCATTATTTCTCTTGG+TGG | + | chr3_4:80269532-80269551 | None:intergenic | 35.0% |
| ! | GACACTTGCATTATTTCTCT+TGG | + | chr3_4:80269535-80269554 | None:intergenic | 35.0% |
| ATGCAAGTGTCCATTGTAAA+TGG | - | chr3_4:80269544-80269563 | Msa0526420:five_prime_UTR | 35.0% | |
| GAAATATGTTTGTCTCTTCC+AGG | + | chr3_4:80269685-80269704 | None:intergenic | 35.0% | |
| ! | TGTTGTGTTGTTGGACAACA+AGG | - | chr3_4:80265875-80265894 | Msa0526420:three_prime_UTR | 40.0% |
| CTTGGTTGCATACCAAAACA+TGG | + | chr3_4:80266048-80266067 | None:intergenic | 40.0% | |
| ! | TGTTGTGTTGTTGAACATGG+AGG | - | chr3_4:80266193-80266212 | Msa0526420:three_prime_UTR | 40.0% |
| ACAACGCTGAAAGATTGTCA+AGG | - | chr3_4:80266315-80266334 | Msa0526420:intron | 40.0% | |
| AAGTTGAAGTCAGAGAAACG+TGG | + | chr3_4:80266434-80266453 | None:intergenic | 40.0% | |
| ACGTTTCTCTGACTTCAACT+TGG | - | chr3_4:80266433-80266452 | Msa0526420:intron | 40.0% | |
| ! | ATATCAGCACCCCAATTTTC+AGG | + | chr3_4:80266461-80266480 | None:intergenic | 40.0% |
| ! | TGTGAAGGATTTAGCACTGA+TGG | - | chr3_4:80266620-80266639 | Msa0526420:intron | 40.0% |
| ! | TAGACCTTCCGGACATTTTT+CGG | - | chr3_4:80266827-80266846 | Msa0526420:CDS | 40.0% |
| TAGAGAATCCTTGTCCTATG+AGG | - | chr3_4:80266861-80266880 | Msa0526420:CDS | 40.0% | |
| AATCCTTGTCCTATGAGGAT+AGG | - | chr3_4:80266866-80266885 | Msa0526420:CDS | 40.0% | |
| ATGGATTCAACTAGCATGCA+TGG | + | chr3_4:80267200-80267219 | None:intergenic | 40.0% | |
| TCACACTGCTTATGCTTTCA+GGG | + | chr3_4:80267363-80267382 | None:intergenic | 40.0% | |
| ATCACACTGCTTATGCTTTC+AGG | + | chr3_4:80267364-80267383 | None:intergenic | 40.0% | |
| !! | TTCACACCCTTTCTGGTTTA+TGG | - | chr3_4:80267863-80267882 | Msa0526420:CDS | 40.0% |
| !! | TCACACCCTTTCTGGTTTAT+GGG | - | chr3_4:80267864-80267883 | Msa0526420:CDS | 40.0% |
| TGTAGACACAGTTGAAGACA+AGG | - | chr3_4:80268145-80268164 | Msa0526420:intron | 40.0% | |
| GTAGACACAGTTGAAGACAA+GGG | - | chr3_4:80268146-80268165 | Msa0526420:intron | 40.0% | |
| !!! | GGTTTTATTGCTGTCTCTGA+AGG | - | chr3_4:80268269-80268288 | Msa0526420:intron | 40.0% |
| TCATCTGATGGCAAAAGTAG+AGG | + | chr3_4:80268316-80268335 | None:intergenic | 40.0% | |
| CAGCATCATTTGTCATCTGA+TGG | + | chr3_4:80268328-80268347 | None:intergenic | 40.0% | |
| TCAGGTAATCTGGCTGATTA+GGG | + | chr3_4:80268409-80268428 | None:intergenic | 40.0% | |
| GGTTCATTTGTCAGGTAATC+TGG | + | chr3_4:80268419-80268438 | None:intergenic | 40.0% | |
| CATCCATAGGTTCATTTGTC+AGG | + | chr3_4:80268427-80268446 | None:intergenic | 40.0% | |
| GACAAATGAACCTATGGATG+AGG | - | chr3_4:80268427-80268446 | Msa0526420:intron | 40.0% | |
| AACCTGATACAGAAAGCCTT+TGG | + | chr3_4:80268487-80268506 | None:intergenic | 40.0% | |
| GACCTCGCATTTGAGTATTT+AGG | - | chr3_4:80268515-80268534 | Msa0526420:intron | 40.0% | |
| TCCCTAAATACTCAAATGCG+AGG | + | chr3_4:80268520-80268539 | None:intergenic | 40.0% | |
| ! | AGGGAAGTATGCCAAAAACT+TGG | - | chr3_4:80268535-80268554 | Msa0526420:intron | 40.0% |
| AAACTTGGAAACGCTTTCAG+TGG | - | chr3_4:80268550-80268569 | Msa0526420:intron | 40.0% | |
| GACTGCCAAGTAACAATGAA+TGG | - | chr3_4:80268725-80268744 | Msa0526420:intron | 40.0% | |
| TGTTAGCAAAAGAAAAGCCG+AGG | - | chr3_4:80268756-80268775 | Msa0526420:intron | 40.0% | |
| AGAGAGTGAGAACAAATGGA+GGG | + | chr3_4:80268877-80268896 | None:intergenic | 40.0% | |
| CCACTAGTAAGTAGTAACCA+AGG | + | chr3_4:80269122-80269141 | None:intergenic | 40.0% | |
| CCTTGGTTACTACTTACTAG+TGG | - | chr3_4:80269119-80269138 | Msa0526420:CDS | 40.0% | |
| GATGCCAACTTTGCCATATA+CGG | + | chr3_4:80269336-80269355 | None:intergenic | 40.0% | |
| ATTACTGAGGCTTCATTGTC+AGG | + | chr3_4:80269358-80269377 | None:intergenic | 40.0% | |
| TGAAGCCTCAGTAATATGGA+AGG | - | chr3_4:80269363-80269382 | Msa0526420:five_prime_UTR | 40.0% | |
| TTCCACCTTCCATATTACTG+AGG | + | chr3_4:80269371-80269390 | None:intergenic | 40.0% | |
| TCAGTAATATGGAAGGTGGA+AGG | - | chr3_4:80269370-80269389 | Msa0526420:five_prime_UTR | 40.0% | |
| GGTGGAAGGAAGAAAAATAG+GGG | - | chr3_4:80269384-80269403 | Msa0526420:five_prime_UTR | 40.0% | |
| ! | GCCATTGATTGTTGTTGTGT+TGG | - | chr3_4:80269437-80269456 | Msa0526420:five_prime_UTR | 40.0% |
| CTTGCCTTCTTTCAACTAGT+TGG | - | chr3_4:80269504-80269523 | Msa0526420:five_prime_UTR | 40.0% | |
| ACGCTGAAAGATTGTCAAGG+AGG | - | chr3_4:80266318-80266337 | Msa0526420:intron | 45.0% | |
| !! | GGGGTGCTGATATTCATTCA+TGG | - | chr3_4:80266468-80266487 | Msa0526420:intron | 45.0% |
| ! | ACCCTTTTCTTGAGGAGTTG+AGG | - | chr3_4:80266513-80266532 | Msa0526420:intron | 45.0% |
| GCCTCAACTCCTCAAGAAAA+GGG | + | chr3_4:80266517-80266536 | None:intergenic | 45.0% | |
| AGCCTCAACTCCTCAAGAAA+AGG | + | chr3_4:80266518-80266537 | None:intergenic | 45.0% | |
| !! | AGGATTTAGCACTGATGGCT+TGG | - | chr3_4:80266625-80266644 | Msa0526420:intron | 45.0% |
| CAAGATCCTGGATTCGAATC+TGG | - | chr3_4:80266751-80266770 | Msa0526420:CDS | 45.0% | |
| CTTCATCCAGATTCGAATCC+AGG | + | chr3_4:80266760-80266779 | None:intergenic | 45.0% | |
| TCTACCGAAAAATGTCCGGA+AGG | + | chr3_4:80266834-80266853 | None:intergenic | 45.0% | |
| GGTCTCTACCGAAAAATGTC+CGG | + | chr3_4:80266838-80266857 | None:intergenic | 45.0% | |
| AAGCCTATCCTCATAGGACA+AGG | + | chr3_4:80266872-80266891 | None:intergenic | 45.0% | |
| TTGTCCTATGAGGATAGGCT+TGG | - | chr3_4:80266871-80266890 | Msa0526420:CDS | 45.0% | |
| TTAGCCAAGCCTATCCTCAT+AGG | + | chr3_4:80266878-80266897 | None:intergenic | 45.0% | |
| TCGATGACAAAAGCGGTGAT+TGG | - | chr3_4:80267566-80267585 | Msa0526420:CDS | 45.0% | |
| GATGCGCTTGAGAAACTTGT+CGG | - | chr3_4:80267664-80267683 | Msa0526420:CDS | 45.0% | |
| TGCCAAGCTCACATAACTGA+GGG | + | chr3_4:80267768-80267787 | None:intergenic | 45.0% | |
| AAGAGTCTTCACACCCTTTC+TGG | - | chr3_4:80267856-80267875 | Msa0526420:CDS | 45.0% | |
| AGCCACCCATAAACCAGAAA+GGG | + | chr3_4:80267872-80267891 | None:intergenic | 45.0% | |
| AAGCCACCCATAAACCAGAA+AGG | + | chr3_4:80267873-80267892 | None:intergenic | 45.0% | |
| GTCCTGACTTCACTCATTTC+CGG | - | chr3_4:80268369-80268388 | Msa0526420:intron | 45.0% | |
| CAGGTAATCTGGCTGATTAG+GGG | + | chr3_4:80268408-80268427 | None:intergenic | 45.0% | |
| GTCAGGTAATCTGGCTGATT+AGG | + | chr3_4:80268410-80268429 | None:intergenic | 45.0% | |
| GGTCTTAACAACTGCTCCAA+AGG | + | chr3_4:80268453-80268472 | None:intergenic | 45.0% | |
| AGACCTGCACTAAACTCCAA+AGG | - | chr3_4:80268468-80268487 | Msa0526420:intron | 45.0% | |
| !! | AAGCCTTTGGAGTTTAGTGC+AGG | + | chr3_4:80268474-80268493 | None:intergenic | 45.0% |
| CTCCAAAGGCTTTCTGTATC+AGG | - | chr3_4:80268482-80268501 | Msa0526420:intron | 45.0% | |
| GAGATAAGGGACTGTCCATT+CGG | - | chr3_4:80268641-80268660 | Msa0526420:intron | 45.0% | |
| ! | TGCAGCACTTTTGTCTGGTT+TGG | - | chr3_4:80268667-80268686 | Msa0526420:intron | 45.0% |
| AGAAGGAAGCGATGATAGTC+AGG | - | chr3_4:80268802-80268821 | Msa0526420:intron | 45.0% | |
| GAGAGTGAGAACAAATGGAG+GGG | + | chr3_4:80268876-80268895 | None:intergenic | 45.0% | |
| CAGAGAGTGAGAACAAATGG+AGG | + | chr3_4:80268878-80268897 | None:intergenic | 45.0% | |
| CCTCTTGAGCTTCAAAGTGT+AGG | + | chr3_4:80268917-80268936 | None:intergenic | 45.0% | |
| !! | CCTACACTTTGAAGCTCAAG+AGG | - | chr3_4:80268914-80268933 | Msa0526420:CDS | 45.0% |
| !!! | GGTTTTGGGTAGTTGTGAAG+TGG | + | chr3_4:80269013-80269032 | None:intergenic | 45.0% |
| CCATATACGGTCACATTCCA+AGG | + | chr3_4:80269323-80269342 | None:intergenic | 45.0% | |
| CCTTGGAATGTGACCGTATA+TGG | - | chr3_4:80269320-80269339 | Msa0526420:CDS | 45.0% | |
| GTGACCGTATATGGCAAAGT+TGG | - | chr3_4:80269329-80269348 | Msa0526420:CDS | 45.0% | |
| AGCCTCAGTAATATGGAAGG+TGG | - | chr3_4:80269366-80269385 | Msa0526420:five_prime_UTR | 45.0% | |
| GGACCCAACTAGTTGAAAGA+AGG | + | chr3_4:80269511-80269530 | None:intergenic | 45.0% | |
| GGAGTTGAGGCTCAAGAGAA+TGG | - | chr3_4:80266526-80266545 | Msa0526420:intron | 50.0% | |
| CTTTCTCTGCTGAGCTGTGA+AGG | - | chr3_4:80266605-80266624 | Msa0526420:intron | 50.0% | |
| CACACACAACTGCAAGATCC+TGG | - | chr3_4:80266739-80266758 | Msa0526420:CDS | 50.0% | |
| GTGATAGACGCTAGACCTTC+CGG | - | chr3_4:80266816-80266835 | Msa0526420:CDS | 50.0% | |
| TTGTTGTCTGTATGGCTGCC+TGG | - | chr3_4:80266901-80266920 | Msa0526420:CDS | 50.0% | |
| CGCTTGAGAAACTTGTCGGT+AGG | - | chr3_4:80267668-80267687 | Msa0526420:CDS | 50.0% | |
| GCCAAGCTCACATAACTGAG+GGG | + | chr3_4:80267767-80267786 | None:intergenic | 50.0% | |
| CTGCCAAGCTCACATAACTG+AGG | + | chr3_4:80267769-80267788 | None:intergenic | 50.0% | |
| CAGTTATGTGAGCTTGGCAG+TGG | - | chr3_4:80267769-80267788 | Msa0526420:CDS | 50.0% | |
| !! | CACCCTTTCTGGTTTATGGG+TGG | - | chr3_4:80267867-80267886 | Msa0526420:CDS | 50.0% |
| TCCTAATCTTCGGCGCCTTT+GGG | - | chr3_4:80268014-80268033 | Msa0526420:CDS | 50.0% | |
| CACAGTTGAAGACAAGGGAC+TGG | - | chr3_4:80268151-80268170 | Msa0526420:intron | 50.0% | |
| ACACGTAGCTCCTCAAGCAA+TGG | + | chr3_4:80268197-80268216 | None:intergenic | 50.0% | |
| TGCACAACACCCTCGTCAAA+GGG | + | chr3_4:80268233-80268252 | None:intergenic | 50.0% | |
| !! | TTTGACGAGGGTGTTGTGCA+CGG | - | chr3_4:80268233-80268252 | Msa0526420:intron | 50.0% |
| ! | TTGCTGTCTCTGAAGGATGC+CGG | - | chr3_4:80268276-80268295 | Msa0526420:intron | 50.0% |
| AGAGGACGTAGTGAAGCTTC+CGG | + | chr3_4:80268298-80268317 | None:intergenic | 50.0% | |
| AGCCGGAAATGAGTGAAGTC+AGG | + | chr3_4:80268374-80268393 | None:intergenic | 50.0% | |
| GAACCTATGGATGAGGCCTT+TGG | - | chr3_4:80268434-80268453 | Msa0526420:intron | 50.0% | |
| ! | ACGCTTTCAGTGGCTTTTGC+CGG | - | chr3_4:80268560-80268579 | Msa0526420:intron | 50.0% |
| TTTGCCGGAAGCAGTGACTT+TGG | - | chr3_4:80268575-80268594 | Msa0526420:intron | 50.0% | |
| TTGCCGGAAGCAGTGACTTT+GGG | - | chr3_4:80268576-80268595 | Msa0526420:intron | 50.0% | |
| CATCCCAAAGTCACTGCTTC+CGG | + | chr3_4:80268582-80268601 | None:intergenic | 50.0% | |
| !! | AAAAGTGCTGCATCGCCGAA+TGG | + | chr3_4:80268659-80268678 | None:intergenic | 50.0% |
| GTTGTGAAGTGGCTGCCATA+TGG | + | chr3_4:80269002-80269021 | None:intergenic | 50.0% | |
| GCTCACATAACTGAGGGGCA+AGG | + | chr3_4:80267762-80267781 | None:intergenic | 55.0% | |
| GCCCCTCAGTTATGTGAGCT+TGG | - | chr3_4:80267763-80267782 | Msa0526420:CDS | 55.0% | |
| GTCCTAATCTTCGGCGCCTT+TGG | - | chr3_4:80268013-80268032 | Msa0526420:CDS | 55.0% | |
| !! | ACCCAAAGGCGCCGAAGATT+AGG | + | chr3_4:80268018-80268037 | None:intergenic | 55.0% |
| GACAAGGGACTGGAAGCTGT+TGG | - | chr3_4:80268161-80268180 | Msa0526420:intron | 55.0% | |
| TCCTGCAGATCCCTTTGACG+AGG | - | chr3_4:80268220-80268239 | Msa0526420:intron | 55.0% | |
| CCTGCAGATCCCTTTGACGA+GGG | - | chr3_4:80268221-80268240 | Msa0526420:intron | 55.0% | |
| GTGCACAACACCCTCGTCAA+AGG | + | chr3_4:80268234-80268253 | None:intergenic | 55.0% | |
| !! | TTGACGAGGGTGTTGTGCAC+GGG | - | chr3_4:80268234-80268253 | Msa0526420:intron | 55.0% |
| GTGCACGGGGTTACTGAATC+AGG | - | chr3_4:80268248-80268267 | Msa0526420:intron | 55.0% | |
| TAGGGGTCATGATGCAGAGC+CGG | + | chr3_4:80268391-80268410 | None:intergenic | 55.0% | |
| GCTCCAAAGGCCTCATCCAT+AGG | + | chr3_4:80268440-80268459 | None:intergenic | 55.0% | |
| GGGATGCAGTCTGTACTTGC+TGG | - | chr3_4:80268596-80268615 | Msa0526420:intron | 55.0% | |
| ! | GGCGATGCAGCACTTTTGTC+TGG | - | chr3_4:80268662-80268681 | Msa0526420:intron | 55.0% |
| TTCTGTTGCCGGCCCAAGAA+GGG | - | chr3_4:80268847-80268866 | Msa0526420:intron | 55.0% | |
| !! | ATGGAGGGGCATCCCTTCTT+GGG | + | chr3_4:80268862-80268881 | None:intergenic | 55.0% |
| !! | AATGGAGGGGCATCCCTTCT+TGG | + | chr3_4:80268863-80268882 | None:intergenic | 55.0% |
| CCCTCGTCAAAGGGATCTGC+AGG | + | chr3_4:80268224-80268243 | None:intergenic | 60.0% | |
| !! | TGACGAGGGTGTTGTGCACG+GGG | - | chr3_4:80268235-80268254 | Msa0526420:intron | 60.0% |
| GTTCTGTTGCCGGCCCAAGA+AGG | - | chr3_4:80268846-80268865 | Msa0526420:intron | 60.0% | |
| !! | AGGGGCATCCCTTCTTGGGC+CGG | + | chr3_4:80268858-80268877 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 80265860 | 80269708 | 80265860 | ID=Msa0526420;Name=Msa0526420 |
| chr3_4 | mRNA | 80265860 | 80269708 | 80265860 | ID=Msa0526420-mRNA-1;Parent=Msa0526420;Name=Msa0526420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=349|1|1|1|0.66|0.5|4|426|573 |
| chr3_4 | exon | 80265860 | 80266248 | 80265860 | ID=Msa0526420-mRNA-1:exon:24116;Parent=Msa0526420-mRNA-1 |
| chr3_4 | exon | 80266633 | 80267425 | 80266633 | ID=Msa0526420-mRNA-1:exon:24115;Parent=Msa0526420-mRNA-1 |
| chr3_4 | exon | 80267533 | 80268037 | 80267533 | ID=Msa0526420-mRNA-1:exon:24114;Parent=Msa0526420-mRNA-1 |
| chr3_4 | exon | 80268899 | 80269708 | 80268899 | ID=Msa0526420-mRNA-1:exon:24113;Parent=Msa0526420-mRNA-1 |
| chr3_4 | five_prime_UTR | 80269360 | 80269708 | 80269360 | ID=Msa0526420-mRNA-1:five_prime_utr;Parent=Msa0526420-mRNA-1 |
| chr3_4 | CDS | 80268899 | 80269359 | 80268899 | ID=Msa0526420-mRNA-1:cds;Parent=Msa0526420-mRNA-1 |
| chr3_4 | CDS | 80267533 | 80268037 | 80267533 | ID=Msa0526420-mRNA-1:cds;Parent=Msa0526420-mRNA-1 |
| chr3_4 | CDS | 80266670 | 80267425 | 80266670 | ID=Msa0526420-mRNA-1:cds;Parent=Msa0526420-mRNA-1 |
| chr3_4 | three_prime_UTR | 80266633 | 80266669 | 80266633 | ID=Msa0526420-mRNA-1:three_prime_utr;Parent=Msa0526420-mRNA-1 |
| chr3_4 | three_prime_UTR | 80265860 | 80266248 | 80265860 | ID=Msa0526420-mRNA-1:three_prime_utr;Parent=Msa0526420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
