Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332630 | XP_024638068.1 | 98.684 | 532 | 7 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332630 | sp|Q9SXJ8|NHX1_ORYSJ | 73.913 | 529 | 124 | 4 | 5 | 531 | 11 | 527 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332630 | A0A396IF47 | 98.684 | 532 | 7 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025160 | Msa1332630 | 0.806927 | 6.485527e-50 | -8.615850e-47 |
| Msa0034210 | Msa1332630 | 0.801471 | 8.866570e-49 | -8.615850e-47 |
| Msa0050660 | Msa1332630 | 0.835500 | 1.618300e-56 | -8.615850e-47 |
| Msa0050700 | Msa1332630 | 0.832744 | 7.935464e-56 | -8.615850e-47 |
| Msa0050790 | Msa1332630 | 0.835422 | 1.693351e-56 | -8.615850e-47 |
| Msa0072520 | Msa1332630 | 0.816123 | 6.504675e-52 | -8.615850e-47 |
| Msa0115550 | Msa1332630 | 0.800745 | 1.247622e-48 | -8.615850e-47 |
| Msa0687090 | Msa1332630 | 0.800624 | 1.320905e-48 | -8.615850e-47 |
| Msa0128310 | Msa1332630 | 0.803889 | 2.809820e-49 | -8.615850e-47 |
| Msa0146650 | Msa1332630 | 0.802418 | 5.662990e-49 | -8.615850e-47 |
| Msa0230870 | Msa1332630 | 0.807127 | 5.881642e-50 | -8.615850e-47 |
| Msa1262570 | Msa1332630 | 0.834145 | 3.550666e-56 | -8.615850e-47 |
| Msa1302280 | Msa1332630 | 0.822150 | 2.763515e-53 | -8.615850e-47 |
| Msa1332630 | Msa1342810 | 0.812709 | 3.698174e-51 | -8.615850e-47 |
| Msa1332630 | Msa1393780 | 0.801264 | 9.775740e-49 | -8.615850e-47 |
| Msa1332630 | Msa1440630 | 0.832149 | 1.114746e-55 | -8.615850e-47 |
| Msa0431200 | Msa1332630 | 0.809655 | 1.699688e-50 | -8.615850e-47 |
| Msa1042160 | Msa1332630 | 0.805936 | 1.049114e-49 | -8.615850e-47 |
| Msa1074600 | Msa1332630 | 0.814367 | 1.597446e-51 | -8.615850e-47 |
| Msa1217230 | Msa1332630 | 0.851646 | 7.749947e-61 | -8.615850e-47 |
| Msa0517250 | Msa1332630 | 0.808237 | 3.418137e-50 | -8.615850e-47 |
| Msa0520260 | Msa1332630 | 0.810980 | 8.801686e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332630 | MtrunA17_Chr4g0066681 | 98.684 | 532 | 7 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1061 |
| Msa1332630 | MtrunA17_Chr1g0191231 | 74.480 | 529 | 129 | 2 | 6 | 531 | 7 | 532 | 0.0 | 803 |
| Msa1332630 | MtrunA17_Chr7g0273581 | 65.210 | 572 | 145 | 5 | 9 | 531 | 4 | 570 | 0.0 | 738 |
| Msa1332630 | MtrunA17_Chr1g0191531 | 63.477 | 512 | 180 | 3 | 22 | 531 | 23 | 529 | 0.0 | 666 |
| Msa1332630 | MtrunA17_Chr3g0100591 | 61.297 | 509 | 189 | 5 | 15 | 520 | 21 | 524 | 0.0 | 608 |
| Msa1332630 | MtrunA17_Chr1g0191541 | 53.502 | 514 | 174 | 8 | 20 | 532 | 21 | 470 | 3.23e-180 | 515 |
| Msa1332630 | MtrunA17_Chr2g0291231 | 33.163 | 196 | 113 | 6 | 255 | 447 | 14 | 194 | 1.32e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332630 | AT3G05030.1 | 72.523 | 535 | 135 | 4 | 5 | 531 | 5 | 535 | 0.0 | 791 |
| Msa1332630 | AT3G05030.4 | 72.523 | 535 | 135 | 4 | 5 | 531 | 5 | 535 | 0.0 | 791 |
| Msa1332630 | AT3G05030.2 | 72.523 | 535 | 135 | 4 | 5 | 531 | 5 | 535 | 0.0 | 791 |
| Msa1332630 | AT5G27150.1 | 73.106 | 528 | 136 | 3 | 6 | 531 | 4 | 527 | 0.0 | 777 |
| Msa1332630 | AT3G06370.3 | 70.019 | 537 | 150 | 4 | 1 | 532 | 2 | 532 | 0.0 | 736 |
| Msa1332630 | AT3G06370.4 | 70.019 | 537 | 150 | 4 | 1 | 532 | 2 | 532 | 0.0 | 736 |
| Msa1332630 | AT3G06370.1 | 76.380 | 453 | 104 | 1 | 1 | 453 | 2 | 451 | 0.0 | 688 |
| Msa1332630 | AT3G05030.3 | 77.726 | 431 | 93 | 1 | 5 | 435 | 5 | 432 | 0.0 | 688 |
| Msa1332630 | AT3G06370.2 | 74.463 | 419 | 102 | 2 | 1 | 417 | 2 | 417 | 0.0 | 624 |
| Msa1332630 | AT5G55470.1 | 59.117 | 521 | 203 | 6 | 6 | 520 | 4 | 520 | 0.0 | 599 |
| Msa1332630 | AT1G79610.1 | 31.448 | 442 | 270 | 13 | 17 | 447 | 20 | 439 | 2.58e-52 | 186 |
| Msa1332630 | AT1G54370.1 | 33.005 | 406 | 251 | 11 | 18 | 415 | 20 | 412 | 9.78e-41 | 154 |
Find 154 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATCCATCTTAGGTTTC+AGG | 0.140957 | 8_4:+52571463 | Msa1332630:intron |
| TGAACTAATCAAATGTCTTT+TGG | 0.199486 | 8_4:+52574426 | Msa1332630:three_prime_UTR |
| ATTATTAAAAGGCTCTATTT+TGG | 0.211060 | 8_4:+52572378 | Msa1332630:CDS |
| GTGTGGTTTGGCTTAAATTT+TGG | 0.230196 | 8_4:+52574017 | Msa1332630:three_prime_UTR |
| ACCACTGCTTTACATTTATT+AGG | 0.251026 | 8_4:+52572196 | Msa1332630:CDS |
| TACGCAATCTGCTTGGTCTT+TGG | 0.254768 | 8_4:-52573818 | None:intergenic |
| TCATTCAGTGTGCCACTTCT+TGG | 0.258334 | 8_4:+52573762 | Msa1332630:CDS |
| GAAGAGCAACAAATATGTTT+AGG | 0.259619 | 8_4:-52570828 | None:intergenic |
| GTGTCTAAATTACTGATATT+TGG | 0.259869 | 8_4:+52574315 | Msa1332630:three_prime_UTR |
| TTAGCGCATACATTATTAAA+AGG | 0.286135 | 8_4:+52572367 | Msa1332630:CDS |
| TCTTTCATGCGACCTGTCTT+TGG | 0.300257 | 8_4:+52573897 | Msa1332630:CDS |
| CAAGGAAAGAAAAGATTTAT+AGG | 0.301723 | 8_4:+52574130 | Msa1332630:three_prime_UTR |
| ACGCAATCTGCTTGGTCTTT+GGG | 0.311048 | 8_4:-52573817 | None:intergenic |
| CCTGTCGTTGCTCTAGTTGC+AGG | 0.318208 | 8_4:+52574556 | Msa1332630:three_prime_UTR |
| AGTGGCACACTGAATGATTT+CGG | 0.319470 | 8_4:-52573756 | None:intergenic |
| AATATATGTGACATTGAGTT+TGG | 0.321652 | 8_4:+52570724 | Msa1332630:five_prime_UTR |
| CATCGTCATTGGTCATTTGT+TGG | 0.323797 | 8_4:+52570861 | Msa1332630:CDS |
| AGTGTTTGACACTAAGTTAA+AGG | 0.324278 | 8_4:-52573956 | None:intergenic |
| CTGTCTCACAGGTGACAATT+TGG | 0.328103 | 8_4:+52573251 | Msa1332630:intron |
| AAAAGGTACTGGGAAGAATA+TGG | 0.332047 | 8_4:+52574613 | Msa1332630:three_prime_UTR |
| GTGGCACACTGAATGATTTC+GGG | 0.338694 | 8_4:-52573755 | None:intergenic |
| TGTTCCATGATGACAGAATT+AGG | 0.348529 | 8_4:+52574460 | Msa1332630:three_prime_UTR |
| GTTGCTCTAGTTGCAGGGTT+TGG | 0.353511 | 8_4:+52574562 | Msa1332630:three_prime_UTR |
| TGCGACCTGTCTTTGGTGGC+CGG | 0.355037 | 8_4:+52573904 | Msa1332630:CDS |
| CTTTGTACTTGCATCGTCAT+TGG | 0.362451 | 8_4:+52570850 | Msa1332630:CDS |
| GATATTGGTTCCCTCAAGAT+TGG | 0.362548 | 8_4:+52571828 | Msa1332630:CDS |
| TTGAAATTGTGCAGGTGTTT+GGG | 0.364620 | 8_4:+52573652 | Msa1332630:intron |
| AAGAGCAACAAATATGTTTA+GGG | 0.365820 | 8_4:-52570827 | None:intergenic |
| TGGGGTCAGTTCATTGTTGT+TGG | 0.367855 | 8_4:+52573047 | Msa1332630:CDS |
| GCGACCTGTCTTTGGTGGCC+GGG | 0.378700 | 8_4:+52573905 | Msa1332630:CDS |
| CTGAATGATTTCGGGCTAGA+TGG | 0.384626 | 8_4:-52573747 | None:intergenic |
| ATACTAATTAGTTTGATAGA+TGG | 0.384820 | 8_4:+52573988 | Msa1332630:three_prime_UTR |
| GTGTTTGACACTAAGTTAAA+GGG | 0.387417 | 8_4:-52573955 | None:intergenic |
| TGAGTTTGGAGGTGTGAATA+TGG | 0.391171 | 8_4:+52570738 | Msa1332630:exon |
| TGAGTGATGAAGAGGTAAAA+TGG | 0.391695 | 8_4:-52570603 | None:intergenic |
| GTGTTAATATTGTTTACAAC+TGG | 0.393280 | 8_4:+52571032 | Msa1332630:CDS |
| AGATGGTGTGGTGTGTGGTT+TGG | 0.395239 | 8_4:+52574005 | Msa1332630:three_prime_UTR |
| GCAGATTGCGTACGCTCCTT+AGG | 0.401130 | 8_4:+52573829 | Msa1332630:CDS |
| ATCATTCTGCATTATATCAC+TGG | 0.402023 | 8_4:+52571553 | Msa1332630:CDS |
| AGATTCTGTGTGCACATTGC+AGG | 0.402521 | 8_4:+52571978 | Msa1332630:CDS |
| AGAAACTAGAAAGTTCAAAA+AGG | 0.402996 | 8_4:+52574596 | Msa1332630:three_prime_UTR |
| TATTTATCTTCCTTTATGTT+GGG | 0.404210 | 8_4:+52572878 | Msa1332630:CDS |
| CGACCTGTCTTTGGTGGCCG+GGG | 0.408053 | 8_4:+52573906 | Msa1332630:CDS |
| TTTGAAATTGTGCAGGTGTT+TGG | 0.409369 | 8_4:+52573651 | Msa1332630:intron |
| TATTGCACTTGCTTACAATC+AGG | 0.413578 | 8_4:+52573303 | Msa1332630:CDS |
| GTTCATAGCAAGCACTGTCT+TGG | 0.414219 | 8_4:+52572234 | Msa1332630:CDS |
| GCATGGCAGGGTTTGTGTAC+TGG | 0.415493 | 8_4:+52571008 | Msa1332630:intron |
| TTCATAGCAAGCACTGTCTT+GGG | 0.418763 | 8_4:+52572235 | Msa1332630:CDS |
| CTCAAGATTGGAGATTATCT+AGG | 0.423564 | 8_4:+52571840 | Msa1332630:CDS |
| AAAGAAAGAGTTGTTTGCTT+GGG | 0.424334 | 8_4:+52574168 | Msa1332630:three_prime_UTR |
| AACTTTCTAGTTTCTTGTAA+AGG | 0.424980 | 8_4:-52574588 | None:intergenic |
| GGCTTATCTTTCATATATGC+TGG | 0.428194 | 8_4:+52572538 | Msa1332630:CDS |
| CTTAGACAAGTTGGATATGA+AGG | 0.435790 | 8_4:-52573112 | None:intergenic |
| TTGAGACTTCTTAGACAAGT+TGG | 0.436361 | 8_4:-52573121 | None:intergenic |
| ATATTTATCTTCCTTTATGT+TGG | 0.440896 | 8_4:+52572877 | Msa1332630:CDS |
| CAGGTGACAATTTGGTGGGC+TGG | 0.445430 | 8_4:+52573259 | Msa1332630:intron |
| TAATTCTGTCATCATGGAAC+AGG | 0.446094 | 8_4:-52574458 | None:intergenic |
| GTGCATCCATCCCAACATAA+AGG | 0.448599 | 8_4:-52572888 | None:intergenic |
| AGGAAGAAGCTCTCATATAA+TGG | 0.452232 | 8_4:+52571055 | Msa1332630:CDS |
| ATTATTATGTGTTTAGAAGA+AGG | 0.457338 | 8_4:-52573708 | None:intergenic |
| ATGATTTCGGGCTAGATGGC+GGG | 0.468663 | 8_4:-52573743 | None:intergenic |
| TGGGATGGATGCACTAGATA+TGG | 0.474039 | 8_4:+52572897 | Msa1332630:CDS |
| TTGGCAATGGAGAAGATGTA+AGG | 0.475075 | 8_4:+52573781 | Msa1332630:CDS |
| TTCATGCGACCTGTCTTTGG+TGG | 0.475407 | 8_4:+52573900 | Msa1332630:CDS |
| AGGGGTGAACCAGGAACATA+AGG | 0.475510 | 8_4:-52573936 | None:intergenic |
| TATGCATCAGGTTCTTAGTC+AGG | 0.475909 | 8_4:+52572060 | Msa1332630:intron |
| TTACTATACAGCCTGGTGTT+CGG | 0.476552 | 8_4:+52572094 | Msa1332630:CDS |
| CAAAGAAAGAGTTGTTTGCT+TGG | 0.478404 | 8_4:+52574167 | Msa1332630:three_prime_UTR |
| TCCTTAGGATTCCTAGTCAT+GGG | 0.479615 | 8_4:+52573844 | Msa1332630:CDS |
| CTCCTTAGGATTCCTAGTCA+TGG | 0.480546 | 8_4:+52573843 | Msa1332630:CDS |
| TAGATAATCTCCAATCTTGA+GGG | 0.481077 | 8_4:-52571838 | None:intergenic |
| CTGTCGTTGCTCTAGTTGCA+GGG | 0.489406 | 8_4:+52574557 | Msa1332630:three_prime_UTR |
| TATCTTCCTTTATGTTGGGA+TGG | 0.496698 | 8_4:+52572882 | Msa1332630:CDS |
| GGTTGCTCTAATGATACTAA+TGG | 0.497694 | 8_4:+52572517 | Msa1332630:CDS |
| AAGTTGGATATGAAGGAGAG+AGG | 0.498871 | 8_4:-52573105 | None:intergenic |
| AGTTGGATATGAAGGAGAGA+GGG | 0.500994 | 8_4:-52573104 | None:intergenic |
| GACTTAGTTGAGTGATGAAG+AGG | 0.505699 | 8_4:-52570611 | None:intergenic |
| TCTCACAGGTGACAATTTGG+TGG | 0.505832 | 8_4:+52573254 | Msa1332630:intron |
| CGATTCAACTATTGTTGAGT+CGG | 0.507076 | 8_4:-52574401 | None:intergenic |
| GGAGGTGTGAATATGGTTGG+AGG | 0.508799 | 8_4:+52570745 | Msa1332630:exon |
| CTACGCCTTCTCCGAACACC+AGG | 0.508804 | 8_4:-52572105 | None:intergenic |
| TTGATAGATGGTGTGGTGTG+TGG | 0.511175 | 8_4:+52574000 | Msa1332630:three_prime_UTR |
| ACTTTCTGTCACATTATGCC+AGG | 0.519819 | 8_4:-52572718 | None:intergenic |
| CGTCATTGGTCATTTGTTGG+AGG | 0.525996 | 8_4:+52570864 | Msa1332630:CDS |
| TACAATGAGAAGAGCAGTGA+TGG | 0.526201 | 8_4:-52570908 | None:intergenic |
| TTCGGGCTAGATGGCGGGGA+CGG | 0.526769 | 8_4:-52573738 | None:intergenic |
| ACGATGCCAATTGCCAAAAG+AGG | 0.529161 | 8_4:+52574088 | Msa1332630:three_prime_UTR |
| TGCGCCTAATTCTGTCATCA+TGG | 0.529865 | 8_4:-52574464 | None:intergenic |
| CTAGATAATCTCCAATCTTG+AGG | 0.531082 | 8_4:-52571839 | None:intergenic |
| AGACCCTGCATTGAAAATGA+TGG | 0.531293 | 8_4:-52571117 | None:intergenic |
| TCTGCTCTCAGCTCACCACC+AGG | 0.531877 | 8_4:-52574496 | None:intergenic |
| AGTGTGCCACTTCTTGGCAA+TGG | 0.537863 | 8_4:+52573768 | Msa1332630:CDS |
| GTCATGGGGTACATCACTAC+TGG | 0.541862 | 8_4:+52573859 | Msa1332630:CDS |
| CTAAGTTAAAGGGGTGAACC+AGG | 0.541980 | 8_4:-52573945 | None:intergenic |
| GGAGAAGATGTAAGGGGCAA+TGG | 0.543229 | 8_4:+52573789 | Msa1332630:CDS |
| TTCTTATGTCACATTATACC+TGG | 0.544701 | 8_4:+52572700 | Msa1332630:CDS |
| TTTGGAGGTGTGAATATGGT+TGG | 0.546605 | 8_4:+52570742 | Msa1332630:exon |
| CAAATGCAGCTCTTCCCACT+AGG | 0.548735 | 8_4:-52573077 | None:intergenic |
| AAACCCCGGCCACCAAAGAC+AGG | 0.549989 | 8_4:-52573909 | None:intergenic |
| TGAAAATGATGGGTGGGAGA+AGG | 0.550732 | 8_4:-52571106 | None:intergenic |
| GCAGAAGAACACAGTCAGAA+TGG | 0.554177 | 8_4:-52572673 | None:intergenic |
| TACAGCCTGGTGTTCGGAGA+AGG | 0.561106 | 8_4:+52572100 | Msa1332630:CDS |
| CTCACAGGTGACAATTTGGT+GGG | 0.564909 | 8_4:+52573255 | Msa1332630:intron |
| TTTAACTTAGTGTCAAACAC+TGG | 0.571002 | 8_4:+52573958 | Msa1332630:exon |
| ATTTGTTGGAGGAGAACCGT+TGG | 0.572968 | 8_4:+52570875 | Msa1332630:CDS |
| TTAATATTGTTTACAACTGG+AGG | 0.573519 | 8_4:+52571035 | Msa1332630:CDS |
| TGGTTAAGTCAATGTGGGAG+AGG | 0.575379 | 8_4:-52572177 | None:intergenic |
| AACACCAGGCTGTATAGTAA+AGG | 0.575684 | 8_4:-52572091 | None:intergenic |
| GGAAAGAAAAGATTTATAGG+AGG | 0.578120 | 8_4:+52574133 | Msa1332630:three_prime_UTR |
| TCCTAATAAATGTAAAGCAG+TGG | 0.581310 | 8_4:-52572197 | None:intergenic |
| TTGTTGGCACTTATCCTAGT+GGG | 0.583199 | 8_4:+52573063 | Msa1332630:CDS |
| TCTTCTCCATTGCCAAGAAG+TGG | 0.583601 | 8_4:-52573774 | None:intergenic |
| TGATGGATTCATTAATCCAA+CGG | 0.584319 | 8_4:-52570891 | None:intergenic |
| ATATGTGACATTGAGTTTGG+AGG | 0.586844 | 8_4:+52570727 | Msa1332630:five_prime_UTR |
| CGATGCCAATTGCCAAAAGA+GGG | 0.592551 | 8_4:+52574089 | Msa1332630:three_prime_UTR |
| TGGCAATGGAGAAGATGTAA+GGG | 0.594121 | 8_4:+52573782 | Msa1332630:CDS |
| AGGAGCGTACGCAATCTGCT+TGG | 0.594134 | 8_4:-52573825 | None:intergenic |
| AATAGTACTAGTGATCATGA+TGG | 0.594448 | 8_4:-52573443 | None:intergenic |
| GGTGTGAATATGGTTGGAGG+AGG | 0.595862 | 8_4:+52570748 | Msa1332630:exon |
| AATGATTTCGGGCTAGATGG+CGG | 0.600704 | 8_4:-52573744 | None:intergenic |
| GACCCTGCATTGAAAATGAT+GGG | 0.601449 | 8_4:-52571116 | None:intergenic |
| TGGTGGGCTGGTCTCATGCG+TGG | 0.603536 | 8_4:+52573271 | Msa1332630:CDS |
| GTTGTTGGCACTTATCCTAG+TGG | 0.604848 | 8_4:+52573062 | Msa1332630:CDS |
| TACATGCAGTTTACAAGACT+AGG | 0.607018 | 8_4:+52573397 | Msa1332630:intron |
| CCTGCAACTAGAGCAACGAC+AGG | 0.610687 | 8_4:-52574556 | None:intergenic |
| TAGTGATGTACCCCATGACT+AGG | 0.612022 | 8_4:-52573855 | None:intergenic |
| AGCAGTGGTTAAGTCAATGT+GGG | 0.615760 | 8_4:-52572182 | None:intergenic |
| AACACCTTTACTATACAGCC+TGG | 0.616257 | 8_4:+52572087 | Msa1332630:CDS |
| TCATTCTGCATTATATCACT+GGG | 0.617484 | 8_4:+52571554 | Msa1332630:CDS |
| GGTAGCAATATCCGCACAAG+TGG | 0.619609 | 8_4:-52573687 | None:intergenic |
| CTGCATTGAAAATGATGGGT+GGG | 0.625264 | 8_4:-52571112 | None:intergenic |
| GAAGATGTAAGGGGCAATGG+TGG | 0.625345 | 8_4:+52573792 | Msa1332630:CDS |
| ATTCTGACTGTGTTCTTCTG+CGG | 0.628149 | 8_4:+52572675 | Msa1332630:CDS |
| AAGCAGTGGTTAAGTCAATG+TGG | 0.629476 | 8_4:-52572183 | None:intergenic |
| GATGACCTCGGATCATGCAT+CGG | 0.634491 | 8_4:+52570798 | Msa1332630:CDS |
| GAGAGCAGATTGAATTCACA+TGG | 0.640269 | 8_4:+52574510 | Msa1332630:three_prime_UTR |
| TGTTTGACACTAAGTTAAAG+GGG | 0.646177 | 8_4:-52573954 | None:intergenic |
| ATGCACTAGATATGGAGAAG+TGG | 0.648287 | 8_4:+52572905 | Msa1332630:CDS |
| AGTGGCGATTCGTAAGTCAA+AGG | 0.649087 | 8_4:+52572923 | Msa1332630:CDS |
| GCATTATAGTCATAAAATTG+CGG | 0.650947 | 8_4:-52571505 | None:intergenic |
| AATTAGTTTGATAGATGGTG+TGG | 0.658062 | 8_4:+52573993 | Msa1332630:three_prime_UTR |
| CCTTAGGATTCCTAGTCATG+GGG | 0.658774 | 8_4:+52573845 | Msa1332630:CDS |
| GAACATAAGGTACAAAACCC+CGG | 0.664909 | 8_4:-52573923 | None:intergenic |
| ACTAGCGACGATGATGACCT+CGG | 0.666950 | 8_4:+52570786 | Msa1332630:CDS |
| TGATGACGAAGCCACTTGTG+CGG | 0.668770 | 8_4:+52573676 | Msa1332630:CDS |
| CACAACCGATGCATGATCCG+AGG | 0.673903 | 8_4:-52570803 | None:intergenic |
| GGCAATGGAGAAGATGTAAG+GGG | 0.674675 | 8_4:+52573783 | Msa1332630:CDS |
| CTGCTCTCAGCTCACCACCA+GGG | 0.682340 | 8_4:-52574495 | None:intergenic |
| CCTGCATTGAAAATGATGGG+TGG | 0.685223 | 8_4:-52571113 | None:intergenic |
| GGCGCACATAATCACCCTGG+TGG | 0.707786 | 8_4:+52574481 | Msa1332630:three_prime_UTR |
| TTAGGCGCACATAATCACCC+TGG | 0.729289 | 8_4:+52574478 | Msa1332630:three_prime_UTR |
| AGTTGTACTCTTCAGCACAG+TGG | 0.732455 | 8_4:+52573468 | Msa1332630:CDS |
| CAGACACTCTACAGACCGCG+AGG | 0.761245 | 8_4:+52572496 | Msa1332630:intron |
| GTATCATTAGAGCAACCTCG+CGG | 0.763928 | 8_4:-52572511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATGATATATTATTGA+TGG | + | chr8_4:52570986-52571005 | Msa1332630:intron | 15.0% |
| !!! | GTTTAATTTTATTTTTGCAA+AGG | - | chr8_4:52571223-52571242 | None:intergenic | 15.0% |
| !!! | TGTTTTTTCTGATATTTTTT+AGG | + | chr8_4:52572335-52572354 | Msa1332630:intron | 15.0% |
| !! | TTATACTAATGTAAATATGT+TGG | - | chr8_4:52572775-52572794 | None:intergenic | 15.0% |
| !!! | TATAAAGATTTTTAGATTGA+TGG | + | chr8_4:52572946-52572965 | Msa1332630:intron | 15.0% |
| !! | AAGCTTAGTAAAATTAAGAA+AGG | + | chr8_4:52570686-52570705 | Msa1332630:intron | 20.0% |
| !!! | AAGAAAGGTTAATTAGTTTT+TGG | + | chr8_4:52570701-52570720 | Msa1332630:intron | 20.0% |
| !! | CGTATTGTAAATACAAATAA+AGG | - | chr8_4:52571156-52571175 | None:intergenic | 20.0% |
| !! | AAACAATGTAGATATTTGAA+AGG | + | chr8_4:52571239-52571258 | Msa1332630:intron | 20.0% |
| !!! | TTTATGACTATAATGCTTTT+TGG | + | chr8_4:52571512-52571531 | Msa1332630:CDS | 20.0% |
| !! | CAATTGATAAAATTGATTGA+TGG | - | chr8_4:52571618-52571637 | None:intergenic | 20.0% |
| !! | TTCTTCCAAAAATTAGATAT+TGG | + | chr8_4:52571813-52571832 | Msa1332630:CDS | 20.0% |
| !! | ATTATCTGATGATTTAATGT+TGG | + | chr8_4:52571880-52571899 | Msa1332630:intron | 20.0% |
| !!! | TTTTCTGATATTTTTTAGGT+TGG | + | chr8_4:52572339-52572358 | Msa1332630:intron | 20.0% |
| !!! | ATTATTAAAAGGCTCTATTT+TGG | + | chr8_4:52572378-52572397 | Msa1332630:CDS | 20.0% |
| !!! | GATCGTTTTTATTATTTCTT+TGG | + | chr8_4:52572631-52572650 | Msa1332630:intron | 20.0% |
| !! | ATATTTATCTTCCTTTATGT+TGG | + | chr8_4:52572877-52572896 | Msa1332630:CDS | 20.0% |
| !! | TATTTATCTTCCTTTATGTT+GGG | + | chr8_4:52572878-52572897 | Msa1332630:CDS | 20.0% |
| !! | ATTATTATGTGTTTAGAAGA+AGG | - | chr8_4:52573711-52573730 | None:intergenic | 20.0% |
| !!! | ATACTAATTAGTTTGATAGA+TGG | + | chr8_4:52573988-52574007 | Msa1332630:three_prime_UTR | 20.0% |
| !!! | GATTAAGTGATTCAAATTTT+TGG | + | chr8_4:52574215-52574234 | Msa1332630:three_prime_UTR | 20.0% |
| !!! | ATATAGATTTTACAATTGCT+TGG | + | chr8_4:52574279-52574298 | Msa1332630:three_prime_UTR | 20.0% |
| ! | GTCAAAACAAGATATATTAG+TGG | + | chr8_4:52570631-52570650 | Msa1332630:intron | 25.0% |
| ! | AATATATGTGACATTGAGTT+TGG | + | chr8_4:52570724-52570743 | Msa1332630:five_prime_UTR | 25.0% |
| ! | AAGAGCAACAAATATGTTTA+GGG | - | chr8_4:52570830-52570849 | None:intergenic | 25.0% |
| !! | ATGATATATTATTGATGGCA+TGG | + | chr8_4:52570991-52571010 | Msa1332630:intron | 25.0% |
| ! | GTGTTAATATTGTTTACAAC+TGG | + | chr8_4:52571032-52571051 | Msa1332630:CDS | 25.0% |
| ! | TTAATATTGTTTACAACTGG+AGG | + | chr8_4:52571035-52571054 | Msa1332630:CDS | 25.0% |
| ! | TGTTATTCTTTATCCATCTT+AGG | + | chr8_4:52571456-52571475 | Msa1332630:intron | 25.0% |
| ! | GCATTATAGTCATAAAATTG+CGG | - | chr8_4:52571508-52571527 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTGATAAGACTT+TGG | + | chr8_4:52571653-52571672 | Msa1332630:intron | 25.0% |
| !!! | ATCTGTTATTTATTTTGCCT+AGG | + | chr8_4:52571780-52571799 | Msa1332630:intron | 25.0% |
| !!! | TAATTTTTGGAAGAAGTGTA+TGG | - | chr8_4:52571808-52571827 | None:intergenic | 25.0% |
| ! | ATTATCTATATGTATGCATC+AGG | + | chr8_4:52572048-52572067 | Msa1332630:intron | 25.0% |
| ! | TTAGCGCATACATTATTAAA+AGG | + | chr8_4:52572367-52572386 | Msa1332630:CDS | 25.0% |
| !!! | CTGAAGTAAGATTTTTTTTC+TGG | + | chr8_4:52572561-52572580 | Msa1332630:intron | 25.0% |
| ! | ATTAGCCCAAAAAAATCAAT+TGG | + | chr8_4:52573027-52573046 | Msa1332630:intron | 25.0% |
| ! | TTAGCCCAAAAAAATCAATT+GGG | + | chr8_4:52573028-52573047 | Msa1332630:intron | 25.0% |
| ! | TTAGACTCTACTCAATTAAA+TGG | + | chr8_4:52573491-52573510 | Msa1332630:intron | 25.0% |
| ! | ATGGCACATTAATATAGATT+AGG | + | chr8_4:52573510-52573529 | Msa1332630:intron | 25.0% |
| ! | TTTAACATTCCTAGTTATGA+TGG | - | chr8_4:52573598-52573617 | None:intergenic | 25.0% |
| ! | TCATAACTAGGAATGTTAAA+AGG | + | chr8_4:52573598-52573617 | Msa1332630:intron | 25.0% |
| ! | CAAATGTTCAAGACAATATT+TGG | - | chr8_4:52573635-52573654 | None:intergenic | 25.0% |
| ! | CAAGGAAAGAAAAGATTTAT+AGG | + | chr8_4:52574130-52574149 | Msa1332630:three_prime_UTR | 25.0% |
| ! | GTGTCTAAATTACTGATATT+TGG | + | chr8_4:52574315-52574334 | Msa1332630:three_prime_UTR | 25.0% |
| !! | TGAACTAATCAAATGTCTTT+TGG | + | chr8_4:52574426-52574445 | Msa1332630:three_prime_UTR | 25.0% |
| !! | GAACTAATCAAATGTCTTTT+GGG | + | chr8_4:52574427-52574446 | Msa1332630:three_prime_UTR | 25.0% |
| !!! | AACTTTCTAGTTTCTTGTAA+AGG | - | chr8_4:52574591-52574610 | None:intergenic | 25.0% |
| ! | AGAAACTAGAAAGTTCAAAA+AGG | + | chr8_4:52574596-52574615 | Msa1332630:three_prime_UTR | 25.0% |
| GAAGAGCAACAAATATGTTT+AGG | - | chr8_4:52570831-52570850 | None:intergenic | 30.0% | |
| !! | TGATGGATTCATTAATCCAA+CGG | - | chr8_4:52570894-52570913 | None:intergenic | 30.0% |
| AACATAACAAAGTGACATAC+TGG | + | chr8_4:52571275-52571294 | Msa1332630:intron | 30.0% | |
| !! | ATAATGCTTTTTGGTGCAAT+TGG | + | chr8_4:52571521-52571540 | Msa1332630:CDS | 30.0% |
| ATCATTCTGCATTATATCAC+TGG | + | chr8_4:52571553-52571572 | Msa1332630:CDS | 30.0% | |
| TCATTCTGCATTATATCACT+GGG | + | chr8_4:52571554-52571573 | Msa1332630:CDS | 30.0% | |
| ! | ATTGATGGTATAGAAAGTAG+AGG | - | chr8_4:52571603-52571622 | None:intergenic | 30.0% |
| TAAGACTTTGGATCAAAATG+TGG | + | chr8_4:52571665-52571684 | Msa1332630:intron | 30.0% | |
| TTATCACACACAAAATGTGT+TGG | - | chr8_4:52571730-52571749 | None:intergenic | 30.0% | |
| ! | GGGAACCAATATCTAATTTT+TGG | - | chr8_4:52571821-52571840 | None:intergenic | 30.0% |
| TAGATAATCTCCAATCTTGA+GGG | - | chr8_4:52571841-52571860 | None:intergenic | 30.0% | |
| AAGGTAAGTGTTCATATTTG+TGG | - | chr8_4:52571912-52571931 | None:intergenic | 30.0% | |
| ACCACTGCTTTACATTTATT+AGG | + | chr8_4:52572196-52572215 | Msa1332630:CDS | 30.0% | |
| TCCTAATAAATGTAAAGCAG+TGG | - | chr8_4:52572200-52572219 | None:intergenic | 30.0% | |
| !!! | TCTATTTTGGCAAGTTGATA+AGG | + | chr8_4:52572391-52572410 | Msa1332630:CDS | 30.0% |
| !! | GTTGATAAGGTGGATTAATT+CGG | + | chr8_4:52572404-52572423 | Msa1332630:intron | 30.0% |
| !! | TTGATAAGGTGGATTAATTC+GGG | + | chr8_4:52572405-52572424 | Msa1332630:intron | 30.0% |
| TTCTTATGTCACATTATACC+TGG | + | chr8_4:52572700-52572719 | Msa1332630:CDS | 30.0% | |
| CAGATGTGAAATTAACATTG+TGG | + | chr8_4:52572997-52573016 | Msa1332630:intron | 30.0% | |
| TAGCCCAAAAAAATCAATTG+GGG | + | chr8_4:52573029-52573048 | Msa1332630:intron | 30.0% | |
| !!! | TGACCCCAATTGATTTTTTT+GGG | - | chr8_4:52573035-52573054 | None:intergenic | 30.0% |
| TAGTATGAGTCAATTCTTTC+AGG | - | chr8_4:52573364-52573383 | None:intergenic | 30.0% | |
| AATAGTACTAGTGATCATGA+TGG | - | chr8_4:52573446-52573465 | None:intergenic | 30.0% | |
| ! | TTGAACATTTGAAATTGTGC+AGG | + | chr8_4:52573644-52573663 | Msa1332630:intron | 30.0% |
| TGTTTGACACTAAGTTAAAG+GGG | - | chr8_4:52573957-52573976 | None:intergenic | 30.0% | |
| GTGTTTGACACTAAGTTAAA+GGG | - | chr8_4:52573958-52573977 | None:intergenic | 30.0% | |
| AGTGTTTGACACTAAGTTAA+AGG | - | chr8_4:52573959-52573978 | None:intergenic | 30.0% | |
| ! | TTTAACTTAGTGTCAAACAC+TGG | + | chr8_4:52573958-52573977 | Msa1332630:exon | 30.0% |
| ! | AATTAGTTTGATAGATGGTG+TGG | + | chr8_4:52573993-52574012 | Msa1332630:three_prime_UTR | 30.0% |
| ! | AAAAAAGTGAAGAAGGTACA+AGG | + | chr8_4:52574112-52574131 | Msa1332630:three_prime_UTR | 30.0% |
| GGAAAGAAAAGATTTATAGG+AGG | + | chr8_4:52574133-52574152 | Msa1332630:three_prime_UTR | 30.0% | |
| AAAGAAAGAGTTGTTTGCTT+GGG | + | chr8_4:52574168-52574187 | Msa1332630:three_prime_UTR | 30.0% | |
| ! | TAGAAAGTTCAAAAAGGTAC+TGG | + | chr8_4:52574602-52574621 | Msa1332630:three_prime_UTR | 30.0% |
| !! | AGAAAGTTCAAAAAGGTACT+GGG | + | chr8_4:52574603-52574622 | Msa1332630:three_prime_UTR | 30.0% |
| TGAGTGATGAAGAGGTAAAA+TGG | - | chr8_4:52570606-52570625 | None:intergenic | 35.0% | |
| AAGCTTTCCTTCTCTTTGTT+TGG | - | chr8_4:52570660-52570679 | None:intergenic | 35.0% | |
| ATATGTGACATTGAGTTTGG+AGG | + | chr8_4:52570727-52570746 | Msa1332630:five_prime_UTR | 35.0% | |
| ! | TATATTATTGATGGCATGGC+AGG | + | chr8_4:52570995-52571014 | Msa1332630:intron | 35.0% |
| ! | ATATTATTGATGGCATGGCA+GGG | + | chr8_4:52570996-52571015 | Msa1332630:intron | 35.0% |
| AGGAAGAAGCTCTCATATAA+TGG | + | chr8_4:52571055-52571074 | Msa1332630:CDS | 35.0% | |
| CTTTATCCATCTTAGGTTTC+AGG | + | chr8_4:52571463-52571482 | Msa1332630:intron | 35.0% | |
| !! | CACACAAAATGTGTTGGTTA+GGG | - | chr8_4:52571724-52571743 | None:intergenic | 35.0% |
| !! | ACACACAAAATGTGTTGGTT+AGG | - | chr8_4:52571725-52571744 | None:intergenic | 35.0% |
| CTAGATAATCTCCAATCTTG+AGG | - | chr8_4:52571842-52571861 | None:intergenic | 35.0% | |
| CTCAAGATTGGAGATTATCT+AGG | + | chr8_4:52571840-52571859 | Msa1332630:CDS | 35.0% | |
| GCATTCAGTAGAAGAAGATA+AGG | - | chr8_4:52571931-52571950 | None:intergenic | 35.0% | |
| CAAACAATAGAAGAGACAAG+GGG | - | chr8_4:52572298-52572317 | None:intergenic | 35.0% | |
| GCAAACAATAGAAGAGACAA+GGG | - | chr8_4:52572299-52572318 | None:intergenic | 35.0% | |
| AGCAAACAATAGAAGAGACA+AGG | - | chr8_4:52572300-52572319 | None:intergenic | 35.0% | |
| !!! | ATTTTGGCAAGTTGATAAGG+TGG | + | chr8_4:52572394-52572413 | Msa1332630:intron | 35.0% |
| GGTTGCTCTAATGATACTAA+TGG | + | chr8_4:52572517-52572536 | Msa1332630:CDS | 35.0% | |
| GGCTTATCTTTCATATATGC+TGG | + | chr8_4:52572538-52572557 | Msa1332630:CDS | 35.0% | |
| TTATATAATCACTCTGCTGC+AGG | + | chr8_4:52572821-52572840 | Msa1332630:intron | 35.0% | |
| TATCTTCCTTTATGTTGGGA+TGG | + | chr8_4:52572882-52572901 | Msa1332630:CDS | 35.0% | |
| !!! | CTGACCCCAATTGATTTTTT+TGG | - | chr8_4:52573036-52573055 | None:intergenic | 35.0% |
| ! | CTTAGACAAGTTGGATATGA+AGG | - | chr8_4:52573115-52573134 | None:intergenic | 35.0% |
| TTGAGACTTCTTAGACAAGT+TGG | - | chr8_4:52573124-52573143 | None:intergenic | 35.0% | |
| CAGCTATGAAGATCTTGAAA+TGG | - | chr8_4:52573192-52573211 | None:intergenic | 35.0% | |
| TATTGCACTTGCTTACAATC+AGG | + | chr8_4:52573303-52573322 | Msa1332630:CDS | 35.0% | |
| ATTCTTTCAGGATGTTGAAC+TGG | - | chr8_4:52573352-52573371 | None:intergenic | 35.0% | |
| TACATGCAGTTTACAAGACT+AGG | + | chr8_4:52573397-52573416 | Msa1332630:intron | 35.0% | |
| ! | TTTGAAATTGTGCAGGTGTT+TGG | + | chr8_4:52573651-52573670 | Msa1332630:intron | 35.0% |
| TTGAAATTGTGCAGGTGTTT+GGG | + | chr8_4:52573652-52573671 | Msa1332630:intron | 35.0% | |
| !! | GTGTGGTTTGGCTTAAATTT+TGG | + | chr8_4:52574017-52574036 | Msa1332630:three_prime_UTR | 35.0% |
| ! | TTTTTCCCTCTTTTGGCAAT+TGG | - | chr8_4:52574097-52574116 | None:intergenic | 35.0% |
| !!! | CTTCACTTTTTTCCCTCTTT+TGG | - | chr8_4:52574104-52574123 | None:intergenic | 35.0% |
| AAGAGGGAAAAAAGTGAAGA+AGG | + | chr8_4:52574105-52574124 | Msa1332630:three_prime_UTR | 35.0% | |
| CAAAGAAAGAGTTGTTTGCT+TGG | + | chr8_4:52574167-52574186 | Msa1332630:three_prime_UTR | 35.0% | |
| !!! | TTTTTGGTTTGTACATGCTG+TGG | + | chr8_4:52574231-52574250 | Msa1332630:three_prime_UTR | 35.0% |
| CGATTCAACTATTGTTGAGT+CGG | - | chr8_4:52574404-52574423 | None:intergenic | 35.0% | |
| TAATTCTGTCATCATGGAAC+AGG | - | chr8_4:52574461-52574480 | None:intergenic | 35.0% | |
| TGTTCCATGATGACAGAATT+AGG | + | chr8_4:52574460-52574479 | Msa1332630:three_prime_UTR | 35.0% | |
| GACTTAGTTGAGTGATGAAG+AGG | - | chr8_4:52570614-52570633 | None:intergenic | 40.0% | |
| GTGGTAACCAAACAAAGAGA+AGG | + | chr8_4:52570650-52570669 | Msa1332630:intron | 40.0% | |
| ! | TGAGTTTGGAGGTGTGAATA+TGG | + | chr8_4:52570738-52570757 | Msa1332630:exon | 40.0% |
| ! | TTTGGAGGTGTGAATATGGT+TGG | + | chr8_4:52570742-52570761 | Msa1332630:exon | 40.0% |
| CTTTGTACTTGCATCGTCAT+TGG | + | chr8_4:52570850-52570869 | Msa1332630:CDS | 40.0% | |
| CATCGTCATTGGTCATTTGT+TGG | + | chr8_4:52570861-52570880 | Msa1332630:CDS | 40.0% | |
| TACAATGAGAAGAGCAGTGA+TGG | - | chr8_4:52570911-52570930 | None:intergenic | 40.0% | |
| !! | CTGCATTGAAAATGATGGGT+GGG | - | chr8_4:52571115-52571134 | None:intergenic | 40.0% |
| ! | CACCCATCATTTTCAATGCA+GGG | + | chr8_4:52571114-52571133 | Msa1332630:CDS | 40.0% |
| GACCCTGCATTGAAAATGAT+GGG | - | chr8_4:52571119-52571138 | None:intergenic | 40.0% | |
| AGACCCTGCATTGAAAATGA+TGG | - | chr8_4:52571120-52571139 | None:intergenic | 40.0% | |
| TCTTGACCTGAAACCTAAGA+TGG | - | chr8_4:52571472-52571491 | None:intergenic | 40.0% | |
| !! | GATATTGGTTCCCTCAAGAT+TGG | + | chr8_4:52571828-52571847 | Msa1332630:CDS | 40.0% |
| CTTCTACTGAATGCAGCAAT+TGG | + | chr8_4:52571937-52571956 | Msa1332630:intron | 40.0% | |
| TATGCATCAGGTTCTTAGTC+AGG | + | chr8_4:52572060-52572079 | Msa1332630:intron | 40.0% | |
| AACACCTTTACTATACAGCC+TGG | + | chr8_4:52572087-52572106 | Msa1332630:CDS | 40.0% | |
| AACACCAGGCTGTATAGTAA+AGG | - | chr8_4:52572094-52572113 | None:intergenic | 40.0% | |
| TTACTATACAGCCTGGTGTT+CGG | + | chr8_4:52572094-52572113 | Msa1332630:CDS | 40.0% | |
| AGCAGTGGTTAAGTCAATGT+GGG | - | chr8_4:52572185-52572204 | None:intergenic | 40.0% | |
| AAGCAGTGGTTAAGTCAATG+TGG | - | chr8_4:52572186-52572205 | None:intergenic | 40.0% | |
| ! | TTCATAGCAAGCACTGTCTT+GGG | + | chr8_4:52572235-52572254 | Msa1332630:CDS | 40.0% |
| ATTCTGACTGTGTTCTTCTG+CGG | + | chr8_4:52572675-52572694 | Msa1332630:CDS | 40.0% | |
| ACTTTCTGTCACATTATGCC+AGG | - | chr8_4:52572721-52572740 | None:intergenic | 40.0% | |
| ATGCACTAGATATGGAGAAG+TGG | + | chr8_4:52572905-52572924 | Msa1332630:CDS | 40.0% | |
| TTGTTGGCACTTATCCTAGT+GGG | + | chr8_4:52573063-52573082 | Msa1332630:CDS | 40.0% | |
| AGTTGGATATGAAGGAGAGA+GGG | - | chr8_4:52573107-52573126 | None:intergenic | 40.0% | |
| AAGTTGGATATGAAGGAGAG+AGG | - | chr8_4:52573108-52573127 | None:intergenic | 40.0% | |
| ! | TGTCACTGTCACTTGTATAC+AGG | - | chr8_4:52573573-52573592 | None:intergenic | 40.0% |
| AGTGACACTCCATCATAACT+AGG | + | chr8_4:52573586-52573605 | Msa1332630:intron | 40.0% | |
| AGTGGCACACTGAATGATTT+CGG | - | chr8_4:52573759-52573778 | None:intergenic | 40.0% | |
| TTGGCAATGGAGAAGATGTA+AGG | + | chr8_4:52573781-52573800 | Msa1332630:CDS | 40.0% | |
| TGGCAATGGAGAAGATGTAA+GGG | + | chr8_4:52573782-52573801 | Msa1332630:CDS | 40.0% | |
| TCCTTAGGATTCCTAGTCAT+GGG | + | chr8_4:52573844-52573863 | Msa1332630:CDS | 40.0% | |
| GAACATAAGGTACAAAACCC+CGG | - | chr8_4:52573926-52573945 | None:intergenic | 40.0% | |
| !! | GGTTTTGTACCTTATGTTCC+TGG | + | chr8_4:52573927-52573946 | Msa1332630:CDS | 40.0% |
| GAGAGCAGATTGAATTCACA+TGG | + | chr8_4:52574510-52574529 | Msa1332630:three_prime_UTR | 40.0% | |
| ! | CGTCATTGGTCATTTGTTGG+AGG | + | chr8_4:52570864-52570883 | Msa1332630:CDS | 45.0% |
| ! | ATTTGTTGGAGGAGAACCGT+TGG | + | chr8_4:52570875-52570894 | Msa1332630:CDS | 45.0% |
| !! | TGAAAATGATGGGTGGGAGA+AGG | - | chr8_4:52571109-52571128 | None:intergenic | 45.0% |
| ! | CCTGCATTGAAAATGATGGG+TGG | - | chr8_4:52571116-52571135 | None:intergenic | 45.0% |
| ! | CCACCCATCATTTTCAATGC+AGG | + | chr8_4:52571113-52571132 | Msa1332630:CDS | 45.0% |
| AGATTCTGTGTGCACATTGC+AGG | + | chr8_4:52571978-52571997 | Msa1332630:CDS | 45.0% | |
| TGGTTAAGTCAATGTGGGAG+AGG | - | chr8_4:52572180-52572199 | None:intergenic | 45.0% | |
| ! | GTTCATAGCAAGCACTGTCT+TGG | + | chr8_4:52572234-52572253 | Msa1332630:CDS | 45.0% |
| GTATCATTAGAGCAACCTCG+CGG | - | chr8_4:52572514-52572533 | None:intergenic | 45.0% | |
| GCAGAAGAACACAGTCAGAA+TGG | - | chr8_4:52572676-52572695 | None:intergenic | 45.0% | |
| GTGCATCCATCCCAACATAA+AGG | - | chr8_4:52572891-52572910 | None:intergenic | 45.0% | |
| TGGGATGGATGCACTAGATA+TGG | + | chr8_4:52572897-52572916 | Msa1332630:CDS | 45.0% | |
| AGTGGCGATTCGTAAGTCAA+AGG | + | chr8_4:52572923-52572942 | Msa1332630:CDS | 45.0% | |
| TGGGGTCAGTTCATTGTTGT+TGG | + | chr8_4:52573047-52573066 | Msa1332630:CDS | 45.0% | |
| GTTGTTGGCACTTATCCTAG+TGG | + | chr8_4:52573062-52573081 | Msa1332630:CDS | 45.0% | |
| TCACCTGTGAGACAGATCAT+CGG | - | chr8_4:52573246-52573265 | None:intergenic | 45.0% | |
| CTGTCTCACAGGTGACAATT+TGG | + | chr8_4:52573251-52573270 | Msa1332630:intron | 45.0% | |
| TCTCACAGGTGACAATTTGG+TGG | + | chr8_4:52573254-52573273 | Msa1332630:intron | 45.0% | |
| CTCACAGGTGACAATTTGGT+GGG | + | chr8_4:52573255-52573274 | Msa1332630:intron | 45.0% | |
| AGTTGTACTCTTCAGCACAG+TGG | + | chr8_4:52573468-52573487 | Msa1332630:CDS | 45.0% | |
| ! | AATGATTTCGGGCTAGATGG+CGG | - | chr8_4:52573747-52573766 | None:intergenic | 45.0% |
| ! | CTGAATGATTTCGGGCTAGA+TGG | - | chr8_4:52573750-52573769 | None:intergenic | 45.0% |
| GTGGCACACTGAATGATTTC+GGG | - | chr8_4:52573758-52573777 | None:intergenic | 45.0% | |
| !! | TCATTCAGTGTGCCACTTCT+TGG | + | chr8_4:52573762-52573781 | Msa1332630:CDS | 45.0% |
| TCTTCTCCATTGCCAAGAAG+TGG | - | chr8_4:52573777-52573796 | None:intergenic | 45.0% | |
| GGCAATGGAGAAGATGTAAG+GGG | + | chr8_4:52573783-52573802 | Msa1332630:CDS | 45.0% | |
| ! | ACGCAATCTGCTTGGTCTTT+GGG | - | chr8_4:52573820-52573839 | None:intergenic | 45.0% |
| ! | TACGCAATCTGCTTGGTCTT+TGG | - | chr8_4:52573821-52573840 | None:intergenic | 45.0% |
| CTCCTTAGGATTCCTAGTCA+TGG | + | chr8_4:52573843-52573862 | Msa1332630:CDS | 45.0% | |
| CCTTAGGATTCCTAGTCATG+GGG | + | chr8_4:52573845-52573864 | Msa1332630:CDS | 45.0% | |
| TAGTGATGTACCCCATGACT+AGG | - | chr8_4:52573858-52573877 | None:intergenic | 45.0% | |
| TCTTTCATGCGACCTGTCTT+TGG | + | chr8_4:52573897-52573916 | Msa1332630:CDS | 45.0% | |
| CTAAGTTAAAGGGGTGAACC+AGG | - | chr8_4:52573948-52573967 | None:intergenic | 45.0% | |
| TTGATAGATGGTGTGGTGTG+TGG | + | chr8_4:52574000-52574019 | Msa1332630:three_prime_UTR | 45.0% | |
| ACGATGCCAATTGCCAAAAG+AGG | + | chr8_4:52574088-52574107 | Msa1332630:three_prime_UTR | 45.0% | |
| CGATGCCAATTGCCAAAAGA+GGG | + | chr8_4:52574089-52574108 | Msa1332630:three_prime_UTR | 45.0% | |
| TGCGCCTAATTCTGTCATCA+TGG | - | chr8_4:52574467-52574486 | None:intergenic | 45.0% | |
| !!! | TTTCTAATTTATTTATTTTT+TGG | + | chr8_4:52572465-52572484 | Msa1332630:intron | 5.0% |
| ! | GGAGGTGTGAATATGGTTGG+AGG | + | chr8_4:52570745-52570764 | Msa1332630:exon | 50.0% |
| GGTGTGAATATGGTTGGAGG+AGG | + | chr8_4:52570748-52570767 | Msa1332630:exon | 50.0% | |
| ACTAGCGACGATGATGACCT+CGG | + | chr8_4:52570786-52570805 | Msa1332630:CDS | 50.0% | |
| GATGACCTCGGATCATGCAT+CGG | + | chr8_4:52570798-52570817 | Msa1332630:CDS | 50.0% | |
| ! | GGAAGAAGTGTATGGCACCT+AGG | - | chr8_4:52571800-52571819 | None:intergenic | 50.0% |
| CAAATGCAGCTCTTCCCACT+AGG | - | chr8_4:52573080-52573099 | None:intergenic | 50.0% | |
| ! | TGATGACGAAGCCACTTGTG+CGG | + | chr8_4:52573676-52573695 | Msa1332630:CDS | 50.0% |
| GGTAGCAATATCCGCACAAG+TGG | - | chr8_4:52573690-52573709 | None:intergenic | 50.0% | |
| ! | ATGATTTCGGGCTAGATGGC+GGG | - | chr8_4:52573746-52573765 | None:intergenic | 50.0% |
| !! | AGTGTGCCACTTCTTGGCAA+TGG | + | chr8_4:52573768-52573787 | Msa1332630:CDS | 50.0% |
| GGAGAAGATGTAAGGGGCAA+TGG | + | chr8_4:52573789-52573808 | Msa1332630:CDS | 50.0% | |
| GAAGATGTAAGGGGCAATGG+TGG | + | chr8_4:52573792-52573811 | Msa1332630:CDS | 50.0% | |
| CCCCATGACTAGGAATCCTA+AGG | - | chr8_4:52573848-52573867 | None:intergenic | 50.0% | |
| GTCATGGGGTACATCACTAC+TGG | + | chr8_4:52573859-52573878 | Msa1332630:CDS | 50.0% | |
| TTCATGCGACCTGTCTTTGG+TGG | + | chr8_4:52573900-52573919 | Msa1332630:CDS | 50.0% | |
| AGGGGTGAACCAGGAACATA+AGG | - | chr8_4:52573939-52573958 | None:intergenic | 50.0% | |
| AGATGGTGTGGTGTGTGGTT+TGG | + | chr8_4:52574005-52574024 | Msa1332630:three_prime_UTR | 50.0% | |
| TTAGGCGCACATAATCACCC+TGG | + | chr8_4:52574478-52574497 | Msa1332630:three_prime_UTR | 50.0% | |
| CTGTCGTTGCTCTAGTTGCA+GGG | + | chr8_4:52574557-52574576 | Msa1332630:three_prime_UTR | 50.0% | |
| GTTGCTCTAGTTGCAGGGTT+TGG | + | chr8_4:52574562-52574581 | Msa1332630:three_prime_UTR | 50.0% | |
| CACAACCGATGCATGATCCG+AGG | - | chr8_4:52570806-52570825 | None:intergenic | 55.0% | |
| GCATGGCAGGGTTTGTGTAC+TGG | + | chr8_4:52571008-52571027 | Msa1332630:intron | 55.0% | |
| TACAGCCTGGTGTTCGGAGA+AGG | + | chr8_4:52572100-52572119 | Msa1332630:CDS | 55.0% | |
| ! | GTGCCGATGATCTGTCTCAC+AGG | + | chr8_4:52573240-52573259 | Msa1332630:intron | 55.0% |
| ! | CAGGTGACAATTTGGTGGGC+TGG | + | chr8_4:52573259-52573278 | Msa1332630:intron | 55.0% |
| ! | TGATTTCGGGCTAGATGGCG+GGG | - | chr8_4:52573745-52573764 | None:intergenic | 55.0% |
| ! | AGGAGCGTACGCAATCTGCT+TGG | - | chr8_4:52573828-52573847 | None:intergenic | 55.0% |
| GCAGATTGCGTACGCTCCTT+AGG | + | chr8_4:52573829-52573848 | Msa1332630:CDS | 55.0% | |
| CCTGCAACTAGAGCAACGAC+AGG | - | chr8_4:52574559-52574578 | None:intergenic | 55.0% | |
| CCTGTCGTTGCTCTAGTTGC+AGG | + | chr8_4:52574556-52574575 | Msa1332630:three_prime_UTR | 55.0% | |
| CGCGCTCACTCGTCACACAT+AGG | + | chr8_4:52571344-52571363 | Msa1332630:intron | 60.0% | |
| CTACGCCTTCTCCGAACACC+AGG | - | chr8_4:52572108-52572127 | None:intergenic | 60.0% | |
| CAGACACTCTACAGACCGCG+AGG | + | chr8_4:52572496-52572515 | Msa1332630:intron | 60.0% | |
| ! | TGCGACCTGTCTTTGGTGGC+CGG | + | chr8_4:52573904-52573923 | Msa1332630:CDS | 60.0% |
| AAACCCCGGCCACCAAAGAC+AGG | - | chr8_4:52573912-52573931 | None:intergenic | 60.0% | |
| GGCGCACATAATCACCCTGG+TGG | + | chr8_4:52574481-52574500 | Msa1332630:three_prime_UTR | 60.0% | |
| CTGCTCTCAGCTCACCACCA+GGG | - | chr8_4:52574498-52574517 | None:intergenic | 60.0% | |
| TCTGCTCTCAGCTCACCACC+AGG | - | chr8_4:52574499-52574518 | None:intergenic | 60.0% | |
| !! | TGGTGGGCTGGTCTCATGCG+TGG | + | chr8_4:52573271-52573290 | Msa1332630:CDS | 65.0% |
| !! | TTCGGGCTAGATGGCGGGGA+CGG | - | chr8_4:52573741-52573760 | None:intergenic | 65.0% |
| ! | GCGACCTGTCTTTGGTGGCC+GGG | + | chr8_4:52573905-52573924 | Msa1332630:CDS | 65.0% |
| ! | CGACCTGTCTTTGGTGGCCG+GGG | + | chr8_4:52573906-52573925 | Msa1332630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 52570596 | 52574634 | 52570596 | ID=Msa1332630;Name=Msa1332630 |
| chr8_4 | mRNA | 52570596 | 52574634 | 52570596 | ID=Msa1332630-mRNA-1;Parent=Msa1332630;Name=Msa1332630-mRNA-1;_AED=0.14;_eAED=0.14;_QI=99|1|1|1|0.92|0.86|15|672|532 |
| chr8_4 | exon | 52570596 | 52570641 | 52570596 | ID=Msa1332630-mRNA-1:exon:15785;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52570704 | 52570927 | 52570704 | ID=Msa1332630-mRNA-1:exon:15786;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52571017 | 52571135 | 52571017 | ID=Msa1332630-mRNA-1:exon:15787;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52571478 | 52571575 | 52571478 | ID=Msa1332630-mRNA-1:exon:15788;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52571802 | 52571861 | 52571802 | ID=Msa1332630-mRNA-1:exon:15789;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52571953 | 52571999 | 52571953 | ID=Msa1332630-mRNA-1:exon:15790;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52572070 | 52572264 | 52572070 | ID=Msa1332630-mRNA-1:exon:15791;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52572357 | 52572412 | 52572357 | ID=Msa1332630-mRNA-1:exon:15792;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52572499 | 52572565 | 52572499 | ID=Msa1332630-mRNA-1:exon:15793;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52572657 | 52572757 | 52572657 | ID=Msa1332630-mRNA-1:exon:15794;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52572843 | 52572944 | 52572843 | ID=Msa1332630-mRNA-1:exon:15795;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52573032 | 52573170 | 52573032 | ID=Msa1332630-mRNA-1:exon:15796;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52573262 | 52573324 | 52573262 | ID=Msa1332630-mRNA-1:exon:15797;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52573406 | 52573489 | 52573406 | ID=Msa1332630-mRNA-1:exon:15798;Parent=Msa1332630-mRNA-1 |
| chr8_4 | exon | 52573666 | 52574634 | 52573666 | ID=Msa1332630-mRNA-1:exon:15799;Parent=Msa1332630-mRNA-1 |
| chr8_4 | five_prime_UTR | 52570596 | 52570641 | 52570596 | ID=Msa1332630-mRNA-1:five_prime_utr;Parent=Msa1332630-mRNA-1 |
| chr8_4 | five_prime_UTR | 52570704 | 52570756 | 52570704 | ID=Msa1332630-mRNA-1:five_prime_utr;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52570757 | 52570927 | 52570757 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52571017 | 52571135 | 52571017 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52571478 | 52571575 | 52571478 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52571802 | 52571861 | 52571802 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52571953 | 52571999 | 52571953 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52572070 | 52572264 | 52572070 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52572357 | 52572412 | 52572357 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52572499 | 52572565 | 52572499 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52572657 | 52572757 | 52572657 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52572843 | 52572944 | 52572843 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52573032 | 52573170 | 52573032 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52573262 | 52573324 | 52573262 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52573406 | 52573489 | 52573406 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | CDS | 52573666 | 52573962 | 52573666 | ID=Msa1332630-mRNA-1:cds;Parent=Msa1332630-mRNA-1 |
| chr8_4 | three_prime_UTR | 52573963 | 52574634 | 52573963 | ID=Msa1332630-mRNA-1:three_prime_utr;Parent=Msa1332630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
