AlfalfaGEDB | Msa1217230

M. sativa cultivar zhongmu-4 / Msa1217230

KEGG: K14724
GO: GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600
PFAM: PF00999.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217230	XP_024638068.1	99.060	532	5	0	1	532	1	532	0.0	1065

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217230	sp\|Q9SXJ8\|NHX1_ORYSJ	74.102	529	123	4	5	531	11	527	0.0	804

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217230	A0A396IF47	99.060	532	5	0	1	532	1	532	0.0	1065

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa1217230	0.818479	1.918766e-52	-8.615850e-47
Msa0015570	Msa1217230	0.809728	1.639686e-50	-8.615850e-47
Msa0025160	Msa1217230	0.834549	2.810329e-56	-8.615850e-47
Msa0032980	Msa1217230	0.841574	4.376075e-58	-8.615850e-47
Msa0034210	Msa1217230	0.829197	5.891435e-55	-8.615850e-47
Msa0040640	Msa1217230	0.801749	7.772808e-49	-8.615850e-47
Msa0050660	Msa1217230	0.846537	2.040991e-59	-8.615850e-47
Msa0050700	Msa1217230	0.845885	3.071091e-59	-8.615850e-47
Msa0050790	Msa1217230	0.843484	1.362375e-58	-8.615850e-47
Msa0062340	Msa1217230	0.812988	3.213438e-51	-8.615850e-47

Showing 1 to 10 of 193 entries

Previous1 2 3 4 5…20Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217230	MtrunA17_Chr4g0066681	99.060	532	5	0	1	532	1	532	0.0	1065
Msa1217230	MtrunA17_Chr1g0191231	74.669	529	128	2	6	531	7	532	0.0	805
Msa1217230	MtrunA17_Chr7g0273581	65.385	572	144	5	9	531	4	570	0.0	739
Msa1217230	MtrunA17_Chr1g0191531	63.281	512	181	3	22	531	23	529	0.0	664
Msa1217230	MtrunA17_Chr3g0100591	61.297	509	189	5	15	520	21	524	0.0	609
Msa1217230	MtrunA17_Chr1g0191541	53.155	523	179	9	12	532	12	470	6.15e-180	514
Msa1217230	MtrunA17_Chr2g0291231	33.163	196	113	6	255	447	14	194	1.37e-21	95.5

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1217230	AT3G05030.1	73.084	535	132	5	5	531	5	535	793
Msa1217230	AT3G05030.4	73.084	535	132	5	5	531	5	535	793
Msa1217230	AT3G05030.2	73.084	535	132	5	5	531	5	535	793
Msa1217230	AT5G27150.1	73.295	528	135	3	6	531	4	527	778
Msa1217230	AT3G06370.3	70.205	537	149	4	1	532	2	532	738
Msa1217230	AT3G06370.4	70.205	537	149	4	1	532	2	532	738
Msa1217230	AT3G05030.3	77.958	431	92	1	5	435	5	432	690
Msa1217230	AT3G06370.1	76.600	453	103	1	1	453	2	451	690
Msa1217230	AT3G06370.2	74.702	419	101	2	1	417	2	417	626
Msa1217230	AT5G55470.1	59.309	521	202	6	6	520	4	520	601

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 149 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTACTTGGAAGAATA+TGG	0.303712	8_1:-79476663	None:intergenic
AAACCCCGGCCACCAAAGAC+AGG	0.549989	8_1:+79477367	None:intergenic
AAAGAAAGAGTTGTTTGCTT+GGG	0.424334	8_1:-79477108	Msa1217230:three_prime_UTR
AACACCAGGCTGTATAGTAA+AGG	0.575684	8_1:+79479185	None:intergenic
AACACCTTTACTATACAGCC+TGG	0.616257	8_1:-79479189	Msa1217230:CDS
AACTTTCTAGTTTCTTGTAA+AGG	0.424980	8_1:+79476688	None:intergenic
AAGCAGTGGTTAAGTCAATG+TGG	0.629476	8_1:+79479093	None:intergenic
AAGTTGGATATGAAGGAGAG+AGG	0.498871	8_1:+79478171	None:intergenic
AATAGTACTAGTGATCATGA+TGG	0.594448	8_1:+79477833	None:intergenic
AATGATTTCGGGCTAGATGG+CGG	0.600704	8_1:+79477532	None:intergenic

Showing 1 to 10 of 149 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGAGAAAGGTTAATTAGTT+TGG	-	chr8_1:79476727-79476746	Msa1217230:three_prime_UTR	30.0%
AACATAACAAAGTGAGATAC+TGG	-	chr8_1:79477318-79477337	Msa1217230:exon	30.0%
TCATTCTGCATTATATCACT+AGG	-	chr8_1:79477598-79477617	Msa1217230:CDS	30.0%
TAAGACTTTGGATCAAAATG+TGG	-	chr8_1:79477718-79477737	Msa1217230:intron	30.0%
TTATCACACACAAAATGTGT+TGG	+	chr8_1:79477783-79477802	None:intergenic	30.0%
TAGATAATCTCCAATCTTGA+GGG	+	chr8_1:79477894-79477913	None:intergenic	30.0%
AAGGTAAGTGTTCATATTTG+TGG	+	chr8_1:79477965-79477984	None:intergenic	30.0%
ACCACTGCTTTACATTTATT+AGG	-	chr8_1:79478249-79478268	Msa1217230:intron	30.0%
TCCTAATAAATGTAAAGCAG+TGG	+	chr8_1:79478253-79478272	None:intergenic	30.0%
TTCTTATGTCACATTATACC+TGG	-	chr8_1:79478753-79478772	Msa1217230:CDS	30.0%

Showing 1 to 10 of 231 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	79476664	79480687	79476664	ID=Msa1217230;Name=Msa1217230
chr8_1	mRNA	79476664	79480687	79476664	ID=Msa1217230-mRNA-1;Parent=Msa1217230;Name=Msa1217230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=130\|1\|1\|1\|1\|1\|14\|672\|532
chr8_1	exon	79476664	79477632	79476664	ID=Msa1217230-mRNA-1:exon:27703;Parent=Msa1217230-mRNA-1
chr8_1	exon	79477809	79477892	79477809	ID=Msa1217230-mRNA-1:exon:27702;Parent=Msa1217230-mRNA-1
chr8_1	exon	79477974	79478036	79477974	ID=Msa1217230-mRNA-1:exon:27701;Parent=Msa1217230-mRNA-1
chr8_1	exon	79478128	79478266	79478128	ID=Msa1217230-mRNA-1:exon:27700;Parent=Msa1217230-mRNA-1
chr8_1	exon	79478354	79478455	79478354	ID=Msa1217230-mRNA-1:exon:27699;Parent=Msa1217230-mRNA-1
chr8_1	exon	79478541	79478641	79478541	ID=Msa1217230-mRNA-1:exon:27698;Parent=Msa1217230-mRNA-1
chr8_1	exon	79478733	79478799	79478733	ID=Msa1217230-mRNA-1:exon:27697;Parent=Msa1217230-mRNA-1
chr8_1	exon	79478886	79478941	79478886	ID=Msa1217230-mRNA-1:exon:27696;Parent=Msa1217230-mRNA-1
chr8_1	exon	79479034	79479228	79479034	ID=Msa1217230-mRNA-1:exon:27695;Parent=Msa1217230-mRNA-1
chr8_1	exon	79479299	79479345	79479299	ID=Msa1217230-mRNA-1:exon:27694;Parent=Msa1217230-mRNA-1
chr8_1	exon	79479437	79479496	79479437	ID=Msa1217230-mRNA-1:exon:27693;Parent=Msa1217230-mRNA-1
chr8_1	exon	79479732	79479829	79479732	ID=Msa1217230-mRNA-1:exon:27692;Parent=Msa1217230-mRNA-1
chr8_1	exon	79480179	79480297	79480179	ID=Msa1217230-mRNA-1:exon:27691;Parent=Msa1217230-mRNA-1
chr8_1	exon	79480387	79480687	79480387	ID=Msa1217230-mRNA-1:exon:27690;Parent=Msa1217230-mRNA-1
chr8_1	five_prime_UTR	79480558	79480687	79480558	ID=Msa1217230-mRNA-1:five_prime_utr;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79480387	79480557	79480387	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79480179	79480297	79480179	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79479732	79479829	79479732	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79479437	79479496	79479437	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79479299	79479345	79479299	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79479034	79479228	79479034	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79478886	79478941	79478886	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79478733	79478799	79478733	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79478541	79478641	79478541	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79478354	79478455	79478354	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79478128	79478266	79478128	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79477974	79478036	79477974	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79477809	79477892	79477809	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	CDS	79477336	79477632	79477336	ID=Msa1217230-mRNA-1:cds;Parent=Msa1217230-mRNA-1
chr8_1	three_prime_UTR	79476664	79477335	79476664	ID=Msa1217230-mRNA-1:three_prime_utr;Parent=Msa1217230-mRNA-1

Gene Sequence

>Msa1217230

ATGGTTGGAGGAGGAGCTTTATACGAGAAACTAACGACGATGATGACCTCGGATCATGCATCGGTTGTGTCACTCAACATATTTGTTGCTCTTCTTTGTACTTGTATCGTCATTGGTCATTTGTTGGAGGAGAACCGTTGGATTAATGAATCCATCACTGCTCTTCTCATTGGTTTGTGTACTGGAGTGTTAATTTTGTTTACAACTGGAGGAAGAAGCTCTCATATAATGGTTTTCAGTGAAGATCTTTTCTTTATTTACCTTCTCCCACCCATCATTTTCAATGCAGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATAATGCTTTTTGGTGCAATTGGTACACTCATATCATTCTGCATTATATCACTAGGTGCCATACACTTCTTCCAAAAATTAGATATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTCTCAGCAACAGATTCTGTGTGCACATTGCAGGTTCTTAATCAGGATGAAACACCTTTACTATACAGCCTGGTGTTCGGAGAAGGCGTAGTAAATGATGCTACTTCTATAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAACCACTGCTTTACATTTATTAGGAAACTTTTTATATTTGTTCATAGCAAGCACTGTCTTGGGAATCTTTGTTGGATTGTTTAGCGCATACATTATTAAAAGGCTCTATTTTGGCAAGTTGATAAGACACTCTACAGACCGCGAGGTTGCTCTAATGATACTAATGGCTTATCTTTCATATATGCTAGCTGAACTATTTTCTTTTAGTGCCATTCTGACTGTGTTCTTCTGCGGCATTCTTATGTCACATTATACCTGGCATAATGTGACAGAAAGTTCAAGAATAACAACAAAGCATACTTTTGCTACTATGTCATTCATTGCTGAGATATTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATGGAGAAGTGGCGATTCGTAAGTCAAAGCCCAAAAAAATCAATTGGGGTCAGTTCATTGTTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTCTCCTTCATATCCAACTTGTCTAAGAAGTCTCAATCTGAGAAAATTGAGTTTAAGCAACAAGTGACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATTGCACTTGCTTACAATCAGTTTACAAGACTAGGACATACTAAATTGCGCGAGAATGCCATCATGATCACTAGTACTATTACAGTTGTACTCTTCAGCACAGTGGTGTTTGGGTTGATGACGAAGCCACTTGTGCGGATATTGCTACCTTCTTCTAAACACATAATAATAAGCATACCGTCCCCGCCATCTAGCCCGAAATCATTCAGTGTGCCACTTCTTGGCAATGGAGAAGATGTAAGGGGCAATGGTGGTACCCAAAGACCAAGCAGATTGCGTACGCTCCTTAGGATTCCTAGTCATGGGGTACATCACTACTGGCGCAAATTTGATGATTCTTTCATGCGACCTGTCTTTGGTGGCCGGGGTTTTGTACCTTATGTTCCTGGTTCACCCCTTTAA

Protein sequence

>Msa1217230

MVGGGALYEKLTTMMTSDHASVVSLNIFVALLCTCIVIGHLLEENRWINESITALLIGLCTGVLILFTTGGRSSHIMVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQKLDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFKAIQNFDLSHIDLTTALHLLGNFLYLFIASTVLGIFVGLFSAYIIKRLYFGKLIRHSTDREVALMILMAYLSYMLAELFSFSAILTVFFCGILMSHYTWHNVTESSRITTKHTFATMSFIAEIFIFLYVGMDALDMEKWRFVSQSPKKSIGVSSLLLALILVGRAAFVFPLSFISNLSKKSQSEKIEFKQQVTIWWAGLMRGAVSIALAYNQFTRLGHTKLRENAIMITSTITVVLFSTVVFGLMTKPLVRILLPSSKHIIISIPSPPSSPKSFSVPLLGNGEDVRGNGGTQRPSRLRTLLRIPSHGVHHYWRKFDDSFMRPVFGGRGFVPYVPGSPL*