AlfalfaGEDB | Msa1342030

M. sativa cultivar zhongmu-4 / Msa1342030

KEGG: K02710|K02712
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02533.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342030	RDY14692.1	90.722	97	9	0	1	97	4	100	7.75e-56	178

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342030	sp\|Q49L15\|PSBK_EUCGG	91.667	60	5	0	1	60	1	60	1.80e-32	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342030	A0A371II05	90.722	97	9	0	1	97	4	100	3.70e-56	178

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0141670	Msa1342030	0.801293	9.639316e-49	-8.615850e-47
Msa0268420	Msa1342030	0.825194	5.355145e-54	-8.615850e-47
Msa0268540	Msa1342030	0.802047	6.751184e-49	-8.615850e-47
Msa0268650	Msa1342030	0.813875	2.050597e-51	-8.615850e-47
Msa0268730	Msa1342030	0.800764	1.236453e-48	-8.615850e-47
Msa0268930	Msa1342030	0.806011	1.011640e-49	-8.615850e-47
Msa0269060	Msa1342030	0.802572	5.265252e-49	-8.615850e-47
Msa0344200	Msa1342030	0.816382	5.690806e-52	-8.615850e-47
Msa0582530	Msa1342030	0.829048	6.402193e-55	-8.615850e-47
Msa0582830	Msa1342030	0.804191	2.431409e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342030	MtrunA17_Chr4g0015681	96.667	60	2	1	60	1	60	7.64e-35	113
Msa1342030	MtrunA17_CPg0492901	96.667	60	2	1	60	1	60	7.64e-35	113
Msa1342030	MtrunA17_Chr4g0016771	96.667	60	2	1	60	1	60	7.64e-35	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1342030	ATCG00070.1	76.667	60	14	0	1	60	1	60	3.76e-26	92.0
Msa1342030	ATCG00080.1	97.222	36	1	0	62	97	1	36	2.92e-19	73.9

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Find 6 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGATCCAGGACGTAATCC+TGG	0.474800	tig0005022:+10636	Msa1342030:CDS
ACTGGCATAAAATCTACAAT+TGG	0.453871	tig0005022:-10077	None:intergenic
GGATTCCTATCTAATGATCC+AGG	0.536202	tig0005022:+10624	Msa1342030:CDS
TACGTCCTGGATCATTAGAT+AGG	0.581605	tig0005022:-10629	None:intergenic
TATGCTTAATATCTTTAGCT+TGG	0.440922	tig0005022:+9974	None:intergenic
TCACGTCCAGGATTACGTCC+TGG	0.548081	tig0005022:-10642	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGGCATAAAATCTACAAT+TGG	-	tig0005022:10080-10099	None:intergenic	30.0%
GCTAAGAGAAAAAAGAGTAA+GGG	-	tig0005022:10107-10126	None:intergenic	30.0%
AGCTAAGAGAAAAAAGAGTA+AGG	-	tig0005022:10108-10127	None:intergenic	30.0%
CACAATCAAGATCTAGGTAT+TGG	-	tig0005022:10355-10374	None:intergenic	35.0%
CAATACCTAGATCTTGATTG+TGG	+	tig0005022:10353-10372	Msa1342030:intron	35.0%
CATATCCACAATCAAGATCT+AGG	-	tig0005022:10361-10380	None:intergenic	35.0%
GAGAATCTATTCTCTTTCTC+TGG	+	tig0005022:10506-10525	Msa1342030:intron	35.0%
GGATTCCTATCTAATGATCC+AGG	+	tig0005022:10624-10643	Msa1342030:CDS	40.0%
TACGTCCTGGATCATTAGAT+AGG	-	tig0005022:10632-10651	None:intergenic	40.0%
AATGATCCAGGACGTAATCC+TGG	+	tig0005022:10636-10655	Msa1342030:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0005022	gene	9975	10671	9975	ID=Msa1342030;Name=Msa1342030
tig0005022	mRNA	9975	10671	9975	ID=Msa1342030-mRNA-1;Parent=Msa1342030;Name=Msa1342030-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|1\|0\|0\|2\|0\|97
tig0005022	exon	9975	10149	9975	ID=Msa1342030-mRNA-1:exon:3439;Parent=Msa1342030-mRNA-1
tig0005022	exon	10553	10671	10553	ID=Msa1342030-mRNA-1:exon:3440;Parent=Msa1342030-mRNA-1
tig0005022	CDS	9975	10149	9975	ID=Msa1342030-mRNA-1:cds;Parent=Msa1342030-mRNA-1
tig0005022	CDS	10553	10671	10553	ID=Msa1342030-mRNA-1:cds;Parent=Msa1342030-mRNA-1

Gene Sequence	>Msa1342030 ATGCTTAATATCTTTAGCTTGGTCTGTATTTGTATTGACTCTGCCCTTTATTCAAGTAGTTTTTTCTTGGCAAAATTACCTGAAGCCTACGCTTTTTTGAATCCAATTGTAGATTTTATGCCAGTAATACCCTTACTCTTTTTTCTCTTAGCTTTTGTTTGGCAAGCTGCTGTAAATTTTGTAATGCTTACTCTAAAACTATTTGTTTACACGATAGTGATATTCTTTGTTTCTCTTTTCATCTTCGGATTCCTATCTAATGATCCAGGACGTAATCCTGGACGTGAAGAATAA
Protein sequence	>Msa1342030 MLNIFSLVCICIDSALYSSSFFLAKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVNFVMLTLKLFVYTIVIFFVSLFIFGFLSNDPGRNPGREE*