Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344200 | RDY14692.1 | 90.625 | 96 | 9 | 0 | 1 | 96 | 4 | 99 | 6.83e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344200 | sp|Q49L15|PSBK_EUCGG | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.54e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344200 | A0A371II05 | 90.625 | 96 | 9 | 0 | 1 | 96 | 4 | 99 | 3.26e-55 | 176 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0344200 | 0.801846 | 7.425524e-49 | -8.615850e-47 |
| Msa0057260 | Msa0344200 | 0.806383 | 8.449195e-50 | -8.615850e-47 |
| Msa0065390 | Msa0344200 | 0.801522 | 8.654953e-49 | -8.615850e-47 |
| Msa0094420 | Msa0344200 | 0.815978 | 7.007644e-52 | -8.615850e-47 |
| Msa0095140 | Msa0344200 | 0.859604 | 3.686648e-63 | -8.615850e-47 |
| Msa0095180 | Msa0344200 | 0.805637 | 1.212266e-49 | -8.615850e-47 |
| Msa0095200 | Msa0344200 | 0.825559 | 4.387505e-54 | -8.615850e-47 |
| Msa0095240 | Msa0344200 | 0.822083 | 2.863804e-53 | -8.615850e-47 |
| Msa0095270 | Msa0344200 | 0.848319 | 6.613775e-60 | -8.615850e-47 |
| Msa0110710 | Msa0344200 | 0.808476 | 3.039047e-50 | -8.615850e-47 |
| Msa0132620 | Msa0344200 | 0.805425 | 1.343147e-49 | -8.615850e-47 |
| Msa0139740 | Msa0344200 | 0.806346 | 8.602810e-50 | -8.615850e-47 |
| Msa0141670 | Msa0344200 | 0.817275 | 3.588574e-52 | -8.615850e-47 |
| Msa0157020 | Msa0344200 | 0.803014 | 4.267576e-49 | -8.615850e-47 |
| Msa0175900 | Msa0344200 | 0.807462 | 4.994556e-50 | -8.615850e-47 |
| Msa0221860 | Msa0344200 | 0.814130 | 1.802039e-51 | -8.615850e-47 |
| Msa0222070 | Msa0344200 | 0.813145 | 2.968480e-51 | -8.615850e-47 |
| Msa0222120 | Msa0344200 | 0.811340 | 7.351232e-51 | -8.615850e-47 |
| Msa0227290 | Msa0344200 | 0.800974 | 1.120363e-48 | -8.615850e-47 |
| Msa0257130 | Msa0344200 | 0.803265 | 3.785656e-49 | -8.615850e-47 |
| Msa0263620 | Msa0344200 | 0.811312 | 7.454332e-51 | -8.615850e-47 |
| Msa0268180 | Msa0344200 | 0.874101 | 8.784580e-68 | -8.615850e-47 |
| Msa0268220 | Msa0344200 | 0.811779 | 5.901041e-51 | -8.615850e-47 |
| Msa0268340 | Msa0344200 | 0.825467 | 4.613786e-54 | -8.615850e-47 |
| Msa0268380 | Msa0344200 | 0.847202 | 1.342126e-59 | -8.615850e-47 |
| Msa0268420 | Msa0344200 | 0.875713 | 2.480010e-68 | -8.615850e-47 |
| Msa0268460 | Msa0344200 | 0.823449 | 1.376981e-53 | -8.615850e-47 |
| Msa0268500 | Msa0344200 | 0.828903 | 6.940972e-55 | -8.615850e-47 |
| Msa0268540 | Msa0344200 | 0.867834 | 1.021607e-65 | -8.615850e-47 |
| Msa0268650 | Msa0344200 | 0.851014 | 1.168940e-60 | -8.615850e-47 |
| Msa0268680 | Msa0344200 | 0.808137 | 3.590733e-50 | -8.615850e-47 |
| Msa0268690 | Msa0344200 | 0.835428 | 1.688239e-56 | -8.615850e-47 |
| Msa0268730 | Msa0344200 | 0.826269 | 2.975951e-54 | -8.615850e-47 |
| Msa0268850 | Msa0344200 | 0.876782 | 1.061940e-68 | -8.615850e-47 |
| Msa0268900 | Msa0344200 | 0.839950 | 1.166189e-57 | -8.615850e-47 |
| Msa0268930 | Msa0344200 | 0.833998 | 3.862993e-56 | -8.615850e-47 |
| Msa0269060 | Msa0344200 | 0.868264 | 7.427591e-66 | -8.615850e-47 |
| Msa0269100 | Msa0344200 | 0.824136 | 9.505439e-54 | -8.615850e-47 |
| Msa0306130 | Msa0344200 | 0.819004 | 1.458049e-52 | -8.615850e-47 |
| Msa0344200 | Msa0344240 | 0.827114 | 1.870779e-54 | -8.615850e-47 |
| Msa0344200 | Msa0344250 | 0.800541 | 1.373017e-48 | -8.615850e-47 |
| Msa0344200 | Msa0344290 | 0.809562 | 1.779884e-50 | -8.615850e-47 |
| Msa0344200 | Msa0417630 | 0.811197 | 7.898459e-51 | -8.615850e-47 |
| Msa0344200 | Msa0427050 | 0.812627 | 3.854693e-51 | -8.615850e-47 |
| Msa0344200 | Msa0473450 | 0.808550 | 2.931088e-50 | -8.615850e-47 |
| Msa0344200 | Msa0547050 | 0.810186 | 1.306647e-50 | -8.615850e-47 |
| Msa0344200 | Msa0558890 | 0.801571 | 8.456366e-49 | -8.615850e-47 |
| Msa0344200 | Msa0577870 | 0.804504 | 2.092815e-49 | -8.615850e-47 |
| Msa0344200 | Msa0582530 | 0.860766 | 1.642770e-63 | -8.615850e-47 |
| Msa0344200 | Msa0582570 | 0.817129 | 3.870860e-52 | -8.615850e-47 |
| Msa0344200 | Msa0582580 | 0.816611 | 5.058856e-52 | -8.615850e-47 |
| Msa0344200 | Msa0582620 | 0.873086 | 1.930738e-67 | -8.615850e-47 |
| Msa0344200 | Msa0582710 | 0.833675 | 4.653487e-56 | -8.615850e-47 |
| Msa0344200 | Msa0582740 | 0.860988 | 1.407027e-63 | -8.615850e-47 |
| Msa0344200 | Msa0582830 | 0.833138 | 6.336215e-56 | -8.615850e-47 |
| Msa0344200 | Msa0582900 | 0.849653 | 2.817005e-60 | -8.615850e-47 |
| Msa0344200 | Msa0591370 | 0.802997 | 4.302171e-49 | -8.615850e-47 |
| Msa0344200 | Msa0591390 | 0.816387 | 5.676497e-52 | -8.615850e-47 |
| Msa0344200 | Msa0601780 | 0.806689 | 7.279615e-50 | -8.615850e-47 |
| Msa0344200 | Msa0606060 | 0.804978 | 1.666512e-49 | -8.615850e-47 |
| Msa0344200 | Msa0619330 | 0.807149 | 5.821062e-50 | -8.615850e-47 |
| Msa0344200 | Msa0635990 | 0.803460 | 3.449553e-49 | -8.615850e-47 |
| Msa0344200 | Msa0640880 | 0.808593 | 2.869305e-50 | -8.615850e-47 |
| Msa0344200 | Msa0642910 | 0.806001 | 1.016797e-49 | -8.615850e-47 |
| Msa0344200 | Msa0662850 | 0.808914 | 2.450402e-50 | -8.615850e-47 |
| Msa0344200 | Msa0681890 | 0.806037 | 9.989385e-50 | -8.615850e-47 |
| Msa0344200 | Msa0686610 | 0.813173 | 2.927223e-51 | -8.615850e-47 |
| Msa0344200 | Msa0727020 | 0.820009 | 8.599640e-53 | -8.615850e-47 |
| Msa0344200 | Msa0739570 | 0.801862 | 7.369107e-49 | -8.615850e-47 |
| Msa0344200 | Msa0766880 | 0.814027 | 1.898392e-51 | -8.615850e-47 |
| Msa0344200 | Msa0772210 | 0.829444 | 5.128939e-55 | -8.615850e-47 |
| Msa0344200 | Msa0782330 | 0.813084 | 3.060850e-51 | -8.615850e-47 |
| Msa0344200 | Msa0804930 | 0.801093 | 1.059333e-48 | -8.615850e-47 |
| Msa0344200 | Msa0860270 | 0.809827 | 1.561030e-50 | -8.615850e-47 |
| Msa0344200 | Msa0877420 | 0.801034 | 1.089451e-48 | -8.615850e-47 |
| Msa0344200 | Msa0924860 | 0.826545 | 2.557896e-54 | -8.615850e-47 |
| Msa0344200 | Msa0925020 | 0.800098 | 1.690145e-48 | -8.615850e-47 |
| Msa0344200 | Msa0931090 | 0.860600 | 1.844991e-63 | -8.615850e-47 |
| Msa0344200 | Msa0931150 | 0.852126 | 5.665319e-61 | -8.615850e-47 |
| Msa0344200 | Msa0931200 | 0.804719 | 1.887804e-49 | -8.615850e-47 |
| Msa0344200 | Msa0931280 | 0.847162 | 1.377196e-59 | -8.615850e-47 |
| Msa0344200 | Msa0955310 | 0.800114 | 1.677792e-48 | -8.615850e-47 |
| Msa0344200 | Msa0958020 | 0.811511 | 6.750241e-51 | -8.615850e-47 |
| Msa0344200 | Msa0983710 | 0.815797 | 7.690413e-52 | -8.615850e-47 |
| Msa0344200 | Msa0992590 | 0.830107 | 3.537217e-55 | -8.615850e-47 |
| Msa0344200 | Msa1002040 | 0.831599 | 1.523850e-55 | -8.615850e-47 |
| Msa0344200 | Msa1030280 | 0.838759 | 2.376620e-57 | -8.615850e-47 |
| Msa0344200 | Msa1086020 | 0.834238 | 3.364737e-56 | -8.615850e-47 |
| Msa0344200 | Msa1086060 | 0.842858 | 2.000048e-58 | -8.615850e-47 |
| Msa0344200 | Msa1086160 | 0.821888 | 3.177296e-53 | -8.615850e-47 |
| Msa0344200 | Msa1086170 | 0.834508 | 2.878202e-56 | -8.615850e-47 |
| Msa0344200 | Msa1086260 | 0.809441 | 1.889037e-50 | -8.615850e-47 |
| Msa0344200 | Msa1086290 | 0.869596 | 2.750838e-66 | -8.615850e-47 |
| Msa0344200 | Msa1086330 | 0.802275 | 6.059588e-49 | -8.615850e-47 |
| Msa0344200 | Msa1086340 | 0.830685 | 2.555500e-55 | -8.615850e-47 |
| Msa0344200 | Msa1086370 | 0.872053 | 4.271511e-67 | -8.615850e-47 |
| Msa0344200 | Msa1086480 | 0.855334 | 6.765273e-62 | -8.615850e-47 |
| Msa0344200 | Msa1086520 | 0.810184 | 1.307625e-50 | -8.615850e-47 |
| Msa0344200 | Msa1086630 | 0.821104 | 4.821500e-53 | -8.615850e-47 |
| Msa0344200 | Msa1086690 | 0.819881 | 9.202846e-53 | -8.615850e-47 |
| Msa0344200 | Msa1086830 | 0.816233 | 6.146741e-52 | -8.615850e-47 |
| Msa0344200 | Msa1086870 | 0.865538 | 5.491156e-65 | -8.615850e-47 |
| Msa0344200 | Msa1091690 | 0.813386 | 2.628074e-51 | -8.615850e-47 |
| Msa0344200 | Msa1120540 | 0.805141 | 1.540748e-49 | -8.615850e-47 |
| Msa0344200 | Msa1143140 | 0.859030 | 5.482250e-63 | -8.615850e-47 |
| Msa0344200 | Msa1157160 | 0.817170 | 3.787941e-52 | -8.615850e-47 |
| Msa0344200 | Msa1166180 | 0.803292 | 3.737044e-49 | -8.615850e-47 |
| Msa0344200 | Msa1166280 | 0.802106 | 6.565835e-49 | -8.615850e-47 |
| Msa0344200 | Msa1195860 | 0.800381 | 1.480446e-48 | -8.615850e-47 |
| Msa0344200 | Msa1220740 | 0.807916 | 4.000649e-50 | -8.615850e-47 |
| Msa0344200 | Msa1248400 | 0.802753 | 4.830566e-49 | -8.615850e-47 |
| Msa0344200 | Msa1284030 | 0.818705 | 1.705439e-52 | -8.615850e-47 |
| Msa0344200 | Msa1309910 | 0.805690 | 1.182120e-49 | -8.615850e-47 |
| Msa0344200 | Msa1323060 | 0.822136 | 2.784167e-53 | -8.615850e-47 |
| Msa0344200 | Msa1327820 | 0.826315 | 2.901424e-54 | -8.615850e-47 |
| Msa0344200 | Msa1342030 | 0.816382 | 5.690806e-52 | -8.615850e-47 |
| Msa0344200 | Msa1354850 | 0.847909 | 8.581566e-60 | -8.615850e-47 |
| Msa0344200 | Msa1354890 | 0.863684 | 2.087856e-64 | -8.615850e-47 |
| Msa0344200 | Msa1355020 | 0.819364 | 1.207262e-52 | -8.615850e-47 |
| Msa0344200 | Msa1355060 | 0.853667 | 2.053364e-61 | -8.615850e-47 |
| Msa0344200 | Msa1367940 | 0.813924 | 2.000817e-51 | -8.615850e-47 |
| Msa0344200 | Msa1380540 | 0.825061 | 5.757079e-54 | -8.615850e-47 |
| Msa0344200 | Msa1380580 | 0.814772 | 1.299761e-51 | -8.615850e-47 |
| Msa0344200 | Msa1385940 | 0.804716 | 1.889778e-49 | -8.615850e-47 |
| Msa0344200 | Msa1387090 | 0.806994 | 6.276594e-50 | -8.615850e-47 |
| Msa0344200 | Msa1394090 | 0.828288 | 9.772468e-55 | -8.615850e-47 |
| Msa0344200 | Msa1394100 | 0.818088 | 2.352212e-52 | -8.615850e-47 |
| Msa0344200 | Msa1394140 | 0.815091 | 1.104147e-51 | -8.615850e-47 |
| Msa0344200 | Msa1394240 | 0.843052 | 1.776351e-58 | -8.615850e-47 |
| Msa0344200 | Msa1394280 | 0.819663 | 1.031917e-52 | -8.615850e-47 |
| Msa0344200 | Msa1405180 | 0.810343 | 1.208376e-50 | -8.615850e-47 |
| Msa0344200 | Msa1422750 | 0.815056 | 1.123960e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344200 | MtrunA17_Chr4g0015681 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 6.90e-35 | 114 |
| Msa0344200 | MtrunA17_CPg0492901 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 6.90e-35 | 114 |
| Msa0344200 | MtrunA17_Chr4g0016771 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 6.90e-35 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344200 | ATCG00070.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 3.69e-26 | 92.4 |
| Msa0344200 | ATCG00080.1 | 97.143 | 35 | 1 | 0 | 62 | 96 | 1 | 35 | 2.13e-18 | 72.0 |
Find 6 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTTAATATCTTTAGCT+TGG | 0.440922 | 3_1:-2708503 | Msa0344200:CDS |
| ACTGGCATAAAATCTACAAT+TGG | 0.453871 | 3_1:+2708400 | None:intergenic |
| AATGATCCAGGACGTAATCC+TGG | 0.474800 | 3_1:-2707854 | Msa0344200:CDS |
| GGATTCCTATCTAATGATCC+AGG | 0.536202 | 3_1:-2707866 | Msa0344200:CDS |
| TCACGTCCAGGATTACGTCC+TGG | 0.548081 | 3_1:+2707848 | None:intergenic |
| TACGTCCTGGATCATTAGAT+AGG | 0.581605 | 3_1:+2707861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAATATTAAAATTTT+TGG | - | chr3_1:2707141-2707160 | Msa0344200:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | + | chr3_1:2707147-2707166 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | + | chr3_1:2707298-2707317 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCTTTTGAAATTA+TGG | + | chr3_1:2707660-2707679 | None:intergenic | 10.0% |
| !!! | TAATTCTTTTTTTTTGAATT+GGG | + | chr3_1:2707786-2707805 | None:intergenic | 10.0% |
| !!! | ATAATTCTTTTTTTTTGAAT+TGG | + | chr3_1:2707787-2707806 | None:intergenic | 10.0% |
| !!! | TTTTATTATTTGTTTTGTAT+AGG | - | chr3_1:2708483-2708502 | Msa0344200:CDS | 10.0% |
| !!! | ATTCCAAATATTAAAATTTT+TGG | - | chr3_1:2707141-2707160 | Msa0344200:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | + | chr3_1:2707147-2707166 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | + | chr3_1:2707298-2707317 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCTTTTGAAATTA+TGG | + | chr3_1:2707660-2707679 | None:intergenic | 10.0% |
| !!! | TAATTCTTTTTTTTTGAATT+GGG | + | chr3_1:2707786-2707805 | None:intergenic | 10.0% |
| !!! | ATAATTCTTTTTTTTTGAAT+TGG | + | chr3_1:2707787-2707806 | None:intergenic | 10.0% |
| !!! | TTTTATTATTTGTTTTGTAT+AGG | - | chr3_1:2708483-2708502 | Msa0344200:CDS | 10.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | + | chr3_1:2707139-2707158 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAATTATCT+TGG | - | chr3_1:2707393-2707412 | Msa0344200:intron | 15.0% |
| !!! | AATTCTTTTTTTTTGAATTG+GGG | + | chr3_1:2707785-2707804 | None:intergenic | 15.0% |
| !! | TATCAAATAAGATATAAAGA+AGG | + | chr3_1:2707866-2707885 | None:intergenic | 15.0% |
| !! | ATACCATTATTGTATATAAA+AGG | + | chr3_1:2708137-2708156 | None:intergenic | 15.0% |
| !!! | AAACTTTATTTCTTACTTAA+AGG | - | chr3_1:2708249-2708268 | Msa0344200:intron | 15.0% |
| !!! | AACTTTATTTCTTACTTAAA+GGG | - | chr3_1:2708250-2708269 | Msa0344200:intron | 15.0% |
| !! | TTTACTCATATTCAAAAATT+TGG | + | chr3_1:2708404-2708423 | None:intergenic | 15.0% |
| !!! | AAATTTTTGAATATGAGTAA+AGG | - | chr3_1:2708403-2708422 | Msa0344200:CDS | 15.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | + | chr3_1:2707139-2707158 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAATTATCT+TGG | - | chr3_1:2707393-2707412 | Msa0344200:intron | 15.0% |
| !!! | AATTCTTTTTTTTTGAATTG+GGG | + | chr3_1:2707785-2707804 | None:intergenic | 15.0% |
| !! | TATCAAATAAGATATAAAGA+AGG | + | chr3_1:2707866-2707885 | None:intergenic | 15.0% |
| !! | ATACCATTATTGTATATAAA+AGG | + | chr3_1:2708137-2708156 | None:intergenic | 15.0% |
| !!! | AAACTTTATTTCTTACTTAA+AGG | - | chr3_1:2708249-2708268 | Msa0344200:intron | 15.0% |
| !!! | AACTTTATTTCTTACTTAAA+GGG | - | chr3_1:2708250-2708269 | Msa0344200:intron | 15.0% |
| !! | TTTACTCATATTCAAAAATT+TGG | + | chr3_1:2708404-2708423 | None:intergenic | 15.0% |
| !!! | AAATTTTTGAATATGAGTAA+AGG | - | chr3_1:2708403-2708422 | Msa0344200:CDS | 15.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | + | chr3_1:2706899-2706918 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | + | chr3_1:2706900-2706919 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | - | chr3_1:2706900-2706919 | Msa0344200:intron | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | - | chr3_1:2707185-2707204 | Msa0344200:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | - | chr3_1:2707236-2707255 | Msa0344200:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | - | chr3_1:2707327-2707346 | Msa0344200:intron | 20.0% |
| !! | AATACCAAATCATCAATAAA+CGG | - | chr3_1:2707677-2707696 | Msa0344200:intron | 20.0% |
| !! | AAACAAAAAGAACAAAAAGT+AGG | - | chr3_1:2707828-2707847 | Msa0344200:intron | 20.0% |
| !! | AACAAAAAGAACAAAAAGTA+GGG | - | chr3_1:2707829-2707848 | Msa0344200:intron | 20.0% |
| !!! | GATCCTTTTATATACAATAA+TGG | - | chr3_1:2708131-2708150 | Msa0344200:intron | 20.0% |
| !! | ATATTCAAAAATTTGGATTC+GGG | + | chr3_1:2708397-2708416 | None:intergenic | 20.0% |
| !! | CATATTCAAAAATTTGGATT+CGG | + | chr3_1:2708398-2708417 | None:intergenic | 20.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | + | chr3_1:2706899-2706918 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | + | chr3_1:2706900-2706919 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | - | chr3_1:2706900-2706919 | Msa0344200:intron | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | - | chr3_1:2707185-2707204 | Msa0344200:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | - | chr3_1:2707236-2707255 | Msa0344200:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | - | chr3_1:2707327-2707346 | Msa0344200:intron | 20.0% |
| !! | AATACCAAATCATCAATAAA+CGG | - | chr3_1:2707677-2707696 | Msa0344200:intron | 20.0% |
| !! | AAACAAAAAGAACAAAAAGT+AGG | - | chr3_1:2707828-2707847 | Msa0344200:intron | 20.0% |
| !! | AACAAAAAGAACAAAAAGTA+GGG | - | chr3_1:2707829-2707848 | Msa0344200:intron | 20.0% |
| !!! | GATCCTTTTATATACAATAA+TGG | - | chr3_1:2708131-2708150 | Msa0344200:intron | 20.0% |
| !! | ATATTCAAAAATTTGGATTC+GGG | + | chr3_1:2708397-2708416 | None:intergenic | 20.0% |
| !! | CATATTCAAAAATTTGGATT+CGG | + | chr3_1:2708398-2708417 | None:intergenic | 20.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | - | chr3_1:2706992-2707011 | Msa0344200:intron | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | - | chr3_1:2707468-2707487 | Msa0344200:intron | 25.0% |
| ! | CTAATGAAATTTAGAAAAGG+GGG | + | chr3_1:2708020-2708039 | None:intergenic | 25.0% |
| ! | CCTAATGAAATTTAGAAAAG+GGG | + | chr3_1:2708021-2708040 | None:intergenic | 25.0% |
| ! | CCCTAATGAAATTTAGAAAA+GGG | + | chr3_1:2708022-2708041 | None:intergenic | 25.0% |
| !! | CCCTTTTCTAAATTTCATTA+GGG | - | chr3_1:2708019-2708038 | Msa0344200:intron | 25.0% |
| !! | CCTTTTCTAAATTTCATTAG+GGG | - | chr3_1:2708020-2708039 | Msa0344200:intron | 25.0% |
| !! | CTTTTCTAAATTTCATTAGG+GGG | - | chr3_1:2708021-2708040 | Msa0344200:intron | 25.0% |
| ! | ATACAATAATGGTATTGTAG+CGG | - | chr3_1:2708142-2708161 | Msa0344200:intron | 25.0% |
| !! | GAAACATAAGTTTTTGCAAT+TGG | - | chr3_1:2708369-2708388 | Msa0344200:CDS | 25.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | - | chr3_1:2706992-2707011 | Msa0344200:intron | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | - | chr3_1:2707468-2707487 | Msa0344200:intron | 25.0% |
| ! | CTAATGAAATTTAGAAAAGG+GGG | + | chr3_1:2708020-2708039 | None:intergenic | 25.0% |
| ! | CCTAATGAAATTTAGAAAAG+GGG | + | chr3_1:2708021-2708040 | None:intergenic | 25.0% |
| ! | CCCTAATGAAATTTAGAAAA+GGG | + | chr3_1:2708022-2708041 | None:intergenic | 25.0% |
| !! | CCCTTTTCTAAATTTCATTA+GGG | - | chr3_1:2708019-2708038 | Msa0344200:intron | 25.0% |
| !! | CCTTTTCTAAATTTCATTAG+GGG | - | chr3_1:2708020-2708039 | Msa0344200:intron | 25.0% |
| !! | CTTTTCTAAATTTCATTAGG+GGG | - | chr3_1:2708021-2708040 | Msa0344200:intron | 25.0% |
| ! | ATACAATAATGGTATTGTAG+CGG | - | chr3_1:2708142-2708161 | Msa0344200:intron | 25.0% |
| !! | GAAACATAAGTTTTTGCAAT+TGG | - | chr3_1:2708369-2708388 | Msa0344200:CDS | 25.0% |
| ! | AATTGGATTCAAAAAAGCGT+AGG | + | chr3_1:2706941-2706960 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | + | chr3_1:2706958-2706977 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | + | chr3_1:2706976-2706995 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | + | chr3_1:2706985-2707004 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | + | chr3_1:2706986-2707005 | None:intergenic | 30.0% | |
| ! | CTTTCCGTTTATTGATGATT+TGG | + | chr3_1:2707684-2707703 | None:intergenic | 30.0% |
| ! | TTGGATTTTCTTTTTGCTGA+AGG | + | chr3_1:2707985-2708004 | None:intergenic | 30.0% |
| ! | CCCCTTTTCTAAATTTCATT+AGG | - | chr3_1:2708018-2708037 | Msa0344200:intron | 30.0% |
| CCCCTAATGAAATTTAGAAA+AGG | + | chr3_1:2708023-2708042 | None:intergenic | 30.0% | |
| CACCTATTGCATAATTAAGA+CGG | - | chr3_1:2708089-2708108 | Msa0344200:intron | 30.0% | |
| ATCCGTCTTAATTATGCAAT+AGG | + | chr3_1:2708094-2708113 | None:intergenic | 30.0% | |
| TATGGATCCCTTAATAGTTA+AGG | - | chr3_1:2708196-2708215 | Msa0344200:intron | 30.0% | |
| ATGGATCCCTTAATAGTTAA+GGG | - | chr3_1:2708197-2708216 | Msa0344200:intron | 30.0% | |
| ! | ATTTTCTATATCATTCTCCC+TGG | + | chr3_1:2708431-2708450 | None:intergenic | 30.0% |
| ATGGAAGATTTAGTTACGAT+TGG | + | chr3_1:2708460-2708479 | None:intergenic | 30.0% | |
| ! | AATTGGATTCAAAAAAGCGT+AGG | + | chr3_1:2706941-2706960 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | + | chr3_1:2706958-2706977 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | + | chr3_1:2706976-2706995 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | + | chr3_1:2706985-2707004 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | + | chr3_1:2706986-2707005 | None:intergenic | 30.0% | |
| ! | CTTTCCGTTTATTGATGATT+TGG | + | chr3_1:2707684-2707703 | None:intergenic | 30.0% |
| ! | TTGGATTTTCTTTTTGCTGA+AGG | + | chr3_1:2707985-2708004 | None:intergenic | 30.0% |
| ! | CCCCTTTTCTAAATTTCATT+AGG | - | chr3_1:2708018-2708037 | Msa0344200:intron | 30.0% |
| CCCCTAATGAAATTTAGAAA+AGG | + | chr3_1:2708023-2708042 | None:intergenic | 30.0% | |
| CACCTATTGCATAATTAAGA+CGG | - | chr3_1:2708089-2708108 | Msa0344200:intron | 30.0% | |
| ATCCGTCTTAATTATGCAAT+AGG | + | chr3_1:2708094-2708113 | None:intergenic | 30.0% | |
| TATGGATCCCTTAATAGTTA+AGG | - | chr3_1:2708196-2708215 | Msa0344200:intron | 30.0% | |
| ATGGATCCCTTAATAGTTAA+GGG | - | chr3_1:2708197-2708216 | Msa0344200:intron | 30.0% | |
| ! | ATTTTCTATATCATTCTCCC+TGG | + | chr3_1:2708431-2708450 | None:intergenic | 30.0% |
| ATGGAAGATTTAGTTACGAT+TGG | + | chr3_1:2708460-2708479 | None:intergenic | 30.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | + | chr3_1:2707217-2707236 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | + | chr3_1:2707220-2707239 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | - | chr3_1:2707218-2707237 | Msa0344200:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | + | chr3_1:2707226-2707245 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | - | chr3_1:2707370-2707389 | Msa0344200:intron | 35.0% | |
| ! | TTTTCTTATTCTTCACGTCC+AGG | + | chr3_1:2707522-2707541 | None:intergenic | 35.0% |
| TTTGCTTTGCTTATTTGTGC+TGG | - | chr3_1:2707547-2707566 | Msa0344200:intron | 35.0% | |
| TCATCAATAAACGGAAAGAG+AGG | - | chr3_1:2707686-2707705 | Msa0344200:intron | 35.0% | |
| CATCAATAAACGGAAAGAGA+GGG | - | chr3_1:2707687-2707706 | Msa0344200:intron | 35.0% | |
| ! | TGTACGAATTTTTGTACCGA+GGG | + | chr3_1:2707720-2707739 | None:intergenic | 35.0% |
| ! | TTGTACGAATTTTTGTACCG+AGG | + | chr3_1:2707721-2707740 | None:intergenic | 35.0% |
| CGGTACAAAAATTCGTACAA+CGG | - | chr3_1:2707721-2707740 | Msa0344200:intron | 35.0% | |
| !!! | TTTTTTGAATTGGGGAGAGA+TGG | + | chr3_1:2707777-2707796 | None:intergenic | 35.0% |
| ! | AAGGATCTTTTGTCGAACAA+GGG | + | chr3_1:2708118-2708137 | None:intergenic | 35.0% |
| ! | AAAGGATCTTTTGTCGAACA+AGG | + | chr3_1:2708119-2708138 | None:intergenic | 35.0% |
| ATTGTAGCGGTATAGTTTAG+TGG | - | chr3_1:2708155-2708174 | Msa0344200:intron | 35.0% | |
| ! | TAAAAGTGCGATTCGTTCTA+TGG | - | chr3_1:2708178-2708197 | Msa0344200:intron | 35.0% |
| TGGATCCCTTAATAGTTAAG+GGG | - | chr3_1:2708198-2708217 | Msa0344200:intron | 35.0% | |
| TGAATATGAGTAAAGGATCC+AGG | - | chr3_1:2708410-2708429 | Msa0344200:CDS | 35.0% | |
| GAATATGAGTAAAGGATCCA+GGG | - | chr3_1:2708411-2708430 | Msa0344200:CDS | 35.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | + | chr3_1:2707217-2707236 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | + | chr3_1:2707220-2707239 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | - | chr3_1:2707218-2707237 | Msa0344200:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | + | chr3_1:2707226-2707245 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | - | chr3_1:2707370-2707389 | Msa0344200:intron | 35.0% | |
| ! | TTTTCTTATTCTTCACGTCC+AGG | + | chr3_1:2707522-2707541 | None:intergenic | 35.0% |
| TTTGCTTTGCTTATTTGTGC+TGG | - | chr3_1:2707547-2707566 | Msa0344200:intron | 35.0% | |
| TCATCAATAAACGGAAAGAG+AGG | - | chr3_1:2707686-2707705 | Msa0344200:intron | 35.0% | |
| CATCAATAAACGGAAAGAGA+GGG | - | chr3_1:2707687-2707706 | Msa0344200:intron | 35.0% | |
| ! | TGTACGAATTTTTGTACCGA+GGG | + | chr3_1:2707720-2707739 | None:intergenic | 35.0% |
| ! | TTGTACGAATTTTTGTACCG+AGG | + | chr3_1:2707721-2707740 | None:intergenic | 35.0% |
| CGGTACAAAAATTCGTACAA+CGG | - | chr3_1:2707721-2707740 | Msa0344200:intron | 35.0% | |
| !!! | TTTTTTGAATTGGGGAGAGA+TGG | + | chr3_1:2707777-2707796 | None:intergenic | 35.0% |
| ! | AAGGATCTTTTGTCGAACAA+GGG | + | chr3_1:2708118-2708137 | None:intergenic | 35.0% |
| ! | AAAGGATCTTTTGTCGAACA+AGG | + | chr3_1:2708119-2708138 | None:intergenic | 35.0% |
| ATTGTAGCGGTATAGTTTAG+TGG | - | chr3_1:2708155-2708174 | Msa0344200:intron | 35.0% | |
| ! | TAAAAGTGCGATTCGTTCTA+TGG | - | chr3_1:2708178-2708197 | Msa0344200:intron | 35.0% |
| TGGATCCCTTAATAGTTAAG+GGG | - | chr3_1:2708198-2708217 | Msa0344200:intron | 35.0% | |
| TGAATATGAGTAAAGGATCC+AGG | - | chr3_1:2708410-2708429 | Msa0344200:CDS | 35.0% | |
| GAATATGAGTAAAGGATCCA+GGG | - | chr3_1:2708411-2708430 | Msa0344200:CDS | 35.0% | |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | + | chr3_1:2706934-2706953 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | - | chr3_1:2707489-2707508 | Msa0344200:intron | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | + | chr3_1:2707497-2707516 | None:intergenic | 40.0% | |
| !!! | AAGGGGGCGAATCTTATTTT+TGG | + | chr3_1:2708004-2708023 | None:intergenic | 40.0% |
| TGTTGACGTGTTTCGTAAAG+GGG | + | chr3_1:2708047-2708066 | None:intergenic | 40.0% | |
| ! | GTGTTGACGTGTTTCGTAAA+GGG | + | chr3_1:2708048-2708067 | None:intergenic | 40.0% |
| !! | AGTGTTGACGTGTTTCGTAA+AGG | + | chr3_1:2708049-2708068 | None:intergenic | 40.0% |
| AGGGACCCCTTAACTATTAA+GGG | + | chr3_1:2708206-2708225 | None:intergenic | 40.0% | |
| AAGGGACCCCTTAACTATTA+AGG | + | chr3_1:2708207-2708226 | None:intergenic | 40.0% | |
| TCGTGATATGAATCACGCAA+GGG | + | chr3_1:2708225-2708244 | None:intergenic | 40.0% | |
| ATCGTGATATGAATCACGCA+AGG | + | chr3_1:2708226-2708245 | None:intergenic | 40.0% | |
| ! | TCGTTCGTTGAGAGGTATAA+AGG | + | chr3_1:2708283-2708302 | None:intergenic | 40.0% |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | + | chr3_1:2706934-2706953 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | - | chr3_1:2707489-2707508 | Msa0344200:intron | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | + | chr3_1:2707497-2707516 | None:intergenic | 40.0% | |
| !!! | AAGGGGGCGAATCTTATTTT+TGG | + | chr3_1:2708004-2708023 | None:intergenic | 40.0% |
| TGTTGACGTGTTTCGTAAAG+GGG | + | chr3_1:2708047-2708066 | None:intergenic | 40.0% | |
| ! | GTGTTGACGTGTTTCGTAAA+GGG | + | chr3_1:2708048-2708067 | None:intergenic | 40.0% |
| !! | AGTGTTGACGTGTTTCGTAA+AGG | + | chr3_1:2708049-2708068 | None:intergenic | 40.0% |
| AGGGACCCCTTAACTATTAA+GGG | + | chr3_1:2708206-2708225 | None:intergenic | 40.0% | |
| AAGGGACCCCTTAACTATTA+AGG | + | chr3_1:2708207-2708226 | None:intergenic | 40.0% | |
| TCGTGATATGAATCACGCAA+GGG | + | chr3_1:2708225-2708244 | None:intergenic | 40.0% | |
| ATCGTGATATGAATCACGCA+AGG | + | chr3_1:2708226-2708245 | None:intergenic | 40.0% | |
| ! | TCGTTCGTTGAGAGGTATAA+AGG | + | chr3_1:2708283-2708302 | None:intergenic | 40.0% |
| !! | CAAGATCTAGGTATTGGTGG+TGG | + | chr3_1:2707214-2707233 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | - | chr3_1:2707501-2707520 | Msa0344200:intron | 45.0% | |
| !! | CAAGATCTAGGTATTGGTGG+TGG | + | chr3_1:2707214-2707233 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | - | chr3_1:2707501-2707520 | Msa0344200:intron | 45.0% | |
| !!! | AATAAATTCTTAATTTTTTT+CGG | + | chr3_1:2707063-2707082 | None:intergenic | 5.0% |
| !! | AAAACAAATAATAAAAAAAA+TGG | + | chr3_1:2708479-2708498 | None:intergenic | 5.0% |
| !!! | AATAAATTCTTAATTTTTTT+CGG | + | chr3_1:2707063-2707082 | None:intergenic | 5.0% |
| !! | AAAACAAATAATAAAAAAAA+TGG | + | chr3_1:2708479-2708498 | None:intergenic | 5.0% |
| AAGAGAGGGATTCGAACCCT+CGG | - | chr3_1:2707701-2707720 | Msa0344200:intron | 50.0% | |
| !! | GATGGCTGAGTGGACTAAAG+CGG | + | chr3_1:2707759-2707778 | None:intergenic | 50.0% |
| ACCTCTCAACGAACGATTCG+AGG | - | chr3_1:2708287-2708306 | Msa0344200:intron | 50.0% | |
| TCCTCGAATCGTTCGTTGAG+AGG | + | chr3_1:2708291-2708310 | None:intergenic | 50.0% | |
| AAGAGAGGGATTCGAACCCT+CGG | - | chr3_1:2707701-2707720 | Msa0344200:intron | 50.0% | |
| !! | GATGGCTGAGTGGACTAAAG+CGG | + | chr3_1:2707759-2707778 | None:intergenic | 50.0% |
| ACCTCTCAACGAACGATTCG+AGG | - | chr3_1:2708287-2708306 | Msa0344200:intron | 50.0% | |
| TCCTCGAATCGTTCGTTGAG+AGG | + | chr3_1:2708291-2708310 | None:intergenic | 50.0% | |
| TCACGTCCAGGATTACGTCC+TGG | + | chr3_1:2707510-2707529 | None:intergenic | 55.0% | |
| ATTGGGGAGAGATGGCTGAG+TGG | + | chr3_1:2707769-2707788 | None:intergenic | 55.0% | |
| TCACGTCCAGGATTACGTCC+TGG | + | chr3_1:2707510-2707529 | None:intergenic | 55.0% | |
| ATTGGGGAGAGATGGCTGAG+TGG | + | chr3_1:2707769-2707788 | None:intergenic | 55.0% | |
| !! | GGCTGAGTGGACTAAAGCGG+CGG | + | chr3_1:2707756-2707775 | None:intergenic | 60.0% |
| !! | GGCTGAGTGGACTAAAGCGG+CGG | + | chr3_1:2707756-2707775 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 2706853 | 2708524 | 2706853 | ID=Msa0344200;Name=Msa0344200 |
| chr3_1 | mRNA | 2706853 | 2708524 | 2706853 | ID=Msa0344200-mRNA-1;Parent=Msa0344200;Name=Msa0344200-mRNA-1;_AED=0.46;_eAED=0.49;_QI=0|0|0|1|0|0|3|0|100 |
| chr3_1 | exon | 2708350 | 2708524 | 2708350 | ID=Msa0344200-mRNA-1:exon:892;Parent=Msa0344200-mRNA-1 |
| chr3_1 | exon | 2707852 | 2707959 | 2707852 | ID=Msa0344200-mRNA-1:exon:891;Parent=Msa0344200-mRNA-1 |
| chr3_1 | exon | 2706853 | 2706872 | 2706853 | ID=Msa0344200-mRNA-1:exon:890;Parent=Msa0344200-mRNA-1 |
| chr3_1 | CDS | 2708350 | 2708524 | 2708350 | ID=Msa0344200-mRNA-1:cds;Parent=Msa0344200-mRNA-1 |
| chr3_1 | CDS | 2707852 | 2707959 | 2707852 | ID=Msa0344200-mRNA-1:cds;Parent=Msa0344200-mRNA-1 |
| chr3_1 | CDS | 2706853 | 2706872 | 2706853 | ID=Msa0344200-mRNA-1:cds;Parent=Msa0344200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
