Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0582830 | RDY14692.1 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 7.75e-56 | 178 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0582830 | sp|Q49L15|PSBK_EUCGG | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.80e-32 | 110 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035090 | Msa0582830 | 0.841341 | 5.039299e-58 | -8.615850e-47 |
Msa0039200 | Msa0582830 | 0.800303 | 1.535214e-48 | -8.615850e-47 |
Msa0040190 | Msa0582830 | 0.817103 | 3.922351e-52 | -8.615850e-47 |
Msa0050360 | Msa0582830 | 0.802298 | 5.994793e-49 | -8.615850e-47 |
Msa0065390 | Msa0582830 | 0.801334 | 9.454950e-49 | -8.615850e-47 |
Msa0083570 | Msa0582830 | 0.814291 | 1.660006e-51 | -8.615850e-47 |
Msa0092750 | Msa0582830 | 0.835855 | 1.315832e-56 | -8.615850e-47 |
Msa0094420 | Msa0582830 | 0.808704 | 2.717664e-50 | -8.615850e-47 |
Msa0095140 | Msa0582830 | 0.861242 | 1.176934e-63 | -8.615850e-47 |
Msa0095180 | Msa0582830 | 0.811777 | 5.908948e-51 | -8.615850e-47 |
Msa0095200 | Msa0582830 | 0.877599 | 5.523714e-69 | -8.615850e-47 |
Msa0095240 | Msa0582830 | 0.839752 | 1.313365e-57 | -8.615850e-47 |
Msa0095270 | Msa0582830 | 0.861888 | 7.473290e-64 | -8.615850e-47 |
Msa0095300 | Msa0582830 | 0.801203 | 1.006021e-48 | -8.615850e-47 |
Msa0103060 | Msa0582830 | 0.804155 | 2.474235e-49 | -8.615850e-47 |
Msa0110710 | Msa0582830 | 0.803159 | 3.981073e-49 | -8.615850e-47 |
Msa0123940 | Msa0582830 | 0.815464 | 9.123267e-52 | -8.615850e-47 |
Msa0130120 | Msa0582830 | 0.827264 | 1.722060e-54 | -8.615850e-47 |
Msa0133670 | Msa0582830 | 0.802487 | 5.480527e-49 | -8.615850e-47 |
Msa0133880 | Msa0582830 | 0.806259 | 8.970841e-50 | -8.615850e-47 |
Msa0134550 | Msa0582830 | 0.815600 | 8.510087e-52 | -8.615850e-47 |
Msa0139740 | Msa0582830 | 0.834483 | 2.919978e-56 | -8.615850e-47 |
Msa0141670 | Msa0582830 | 0.813067 | 3.087924e-51 | -8.615850e-47 |
Msa0149070 | Msa0582830 | 0.800833 | 1.197191e-48 | -8.615850e-47 |
Msa0156780 | Msa0582830 | 0.813995 | 1.930069e-51 | -8.615850e-47 |
Msa0175900 | Msa0582830 | 0.830008 | 3.739312e-55 | -8.615850e-47 |
Msa0184120 | Msa0582830 | 0.803373 | 3.595329e-49 | -8.615850e-47 |
Msa0186750 | Msa0582830 | 0.812336 | 4.462447e-51 | -8.615850e-47 |
Msa0190000 | Msa0582830 | 0.804729 | 1.878383e-49 | -8.615850e-47 |
Msa0216010 | Msa0582830 | 0.802856 | 4.599196e-49 | -8.615850e-47 |
Msa0221860 | Msa0582830 | 0.837806 | 4.182359e-57 | -8.615850e-47 |
Msa0222070 | Msa0582830 | 0.825138 | 5.518647e-54 | -8.615850e-47 |
Msa0222120 | Msa0582830 | 0.823195 | 1.578845e-53 | -8.615850e-47 |
Msa0224960 | Msa0582830 | 0.826883 | 2.124464e-54 | -8.615850e-47 |
Msa0225010 | Msa0582830 | 0.829587 | 4.736779e-55 | -8.615850e-47 |
Msa0227290 | Msa0582830 | 0.829890 | 3.996954e-55 | -8.615850e-47 |
Msa0377460 | Msa0582830 | 0.811705 | 6.123889e-51 | -8.615850e-47 |
Msa0417630 | Msa0582830 | 0.806812 | 6.858550e-50 | -8.615850e-47 |
Msa0426860 | Msa0582830 | 0.829440 | 5.141927e-55 | -8.615850e-47 |
Msa0426890 | Msa0582830 | 0.818757 | 1.659450e-52 | -8.615850e-47 |
Msa0427050 | Msa0582830 | 0.824351 | 8.459036e-54 | -8.615850e-47 |
Msa0449930 | Msa0582830 | 0.821581 | 3.742837e-53 | -8.615850e-47 |
Msa0473450 | Msa0582830 | 0.812974 | 3.235520e-51 | -8.615850e-47 |
Msa0482020 | Msa0582830 | 0.808925 | 2.436791e-50 | -8.615850e-47 |
Msa0253410 | Msa0582830 | 0.821060 | 4.936149e-53 | -8.615850e-47 |
Msa0263620 | Msa0582830 | 0.822874 | 1.875122e-53 | -8.615850e-47 |
Msa0268180 | Msa0582830 | 0.918388 | 1.657717e-86 | -8.615850e-47 |
Msa0268220 | Msa0582830 | 0.827564 | 1.459177e-54 | -8.615850e-47 |
Msa0268340 | Msa0582830 | 0.843615 | 1.256862e-58 | -8.615850e-47 |
Msa0268380 | Msa0582830 | 0.867419 | 1.388220e-65 | -8.615850e-47 |
Msa0268420 | Msa0582830 | 0.926938 | 2.353024e-91 | -8.615850e-47 |
Msa0268460 | Msa0582830 | 0.830278 | 3.213012e-55 | -8.615850e-47 |
Msa0268500 | Msa0582830 | 0.841146 | 5.670132e-58 | -8.615850e-47 |
Msa0268540 | Msa0582830 | 0.904952 | 7.164422e-80 | -8.615850e-47 |
Msa0268650 | Msa0582830 | 0.923043 | 4.462477e-89 | -8.615850e-47 |
Msa0268690 | Msa0582830 | 0.800792 | 1.220350e-48 | -8.615850e-47 |
Msa0268730 | Msa0582830 | 0.844376 | 7.854745e-59 | -8.615850e-47 |
Msa0268760 | Msa0582830 | 0.832569 | 8.771113e-56 | -8.615850e-47 |
Msa0268850 | Msa0582830 | 0.896943 | 2.268495e-76 | -8.615850e-47 |
Msa0268900 | Msa0582830 | 0.838486 | 2.795114e-57 | -8.615850e-47 |
Msa0268930 | Msa0582830 | 0.854073 | 1.569090e-61 | -8.615850e-47 |
Msa0269060 | Msa0582830 | 0.918062 | 2.476537e-86 | -8.615850e-47 |
Msa0269100 | Msa0582830 | 0.841452 | 4.711060e-58 | -8.615850e-47 |
Msa0301460 | Msa0582830 | 0.806029 | 1.002972e-49 | -8.615850e-47 |
Msa0301800 | Msa0582830 | 0.801290 | 9.657000e-49 | -8.615850e-47 |
Msa0304870 | Msa0582830 | 0.808447 | 3.083336e-50 | -8.615850e-47 |
Msa0306130 | Msa0582830 | 0.808038 | 3.768511e-50 | -8.615850e-47 |
Msa0307490 | Msa0582830 | 0.822763 | 1.990027e-53 | -8.615850e-47 |
Msa0324060 | Msa0582830 | 0.804301 | 2.306976e-49 | -8.615850e-47 |
Msa0338900 | Msa0582830 | 0.806455 | 8.160031e-50 | -8.615850e-47 |
Msa0341260 | Msa0582830 | 0.807891 | 4.049946e-50 | -8.615850e-47 |
Msa0344200 | Msa0582830 | 0.833138 | 6.336215e-56 | -8.615850e-47 |
Msa0344250 | Msa0582830 | 0.827716 | 1.341629e-54 | -8.615850e-47 |
Msa0487560 | Msa0582830 | 0.808119 | 3.621294e-50 | -8.615850e-47 |
Msa0487620 | Msa0582830 | 0.805683 | 1.186035e-49 | -8.615850e-47 |
Msa0517400 | Msa0582830 | 0.805755 | 1.145450e-49 | -8.615850e-47 |
Msa0550720 | Msa0582830 | 0.817639 | 2.970271e-52 | -8.615850e-47 |
Msa0558890 | Msa0582830 | 0.817850 | 2.662771e-52 | -8.615850e-47 |
Msa0577140 | Msa0582830 | 0.818517 | 1.880728e-52 | -8.615850e-47 |
Msa0582530 | Msa0582830 | 0.915377 | 6.331432e-85 | -8.615850e-47 |
Msa0582570 | Msa0582830 | 0.829577 | 4.762206e-55 | -8.615850e-47 |
Msa0582580 | Msa0582830 | 0.840703 | 7.411955e-58 | -8.615850e-47 |
Msa0582620 | Msa0582830 | 0.860222 | 2.400320e-63 | -8.615850e-47 |
Msa0582710 | Msa0582830 | 0.941254 | 5.723580e-101 | -8.615850e-47 |
Msa0582740 | Msa0582830 | 0.854052 | 1.591186e-61 | -8.615850e-47 |
Msa0582830 | Msa0582900 | 0.849837 | 2.502256e-60 | -8.615850e-47 |
Msa0582830 | Msa0582930 | 0.810980 | 8.801100e-51 | -8.615850e-47 |
Msa0582830 | Msa0586890 | 0.813564 | 2.400916e-51 | -8.615850e-47 |
Msa0582830 | Msa0587060 | 0.812451 | 4.211204e-51 | -8.615850e-47 |
Msa0582830 | Msa0591370 | 0.821313 | 4.313984e-53 | -8.615850e-47 |
Msa0582830 | Msa0595780 | 0.820361 | 7.144870e-53 | -8.615850e-47 |
Msa0582830 | Msa0619060 | 0.807763 | 4.311523e-50 | -8.615850e-47 |
Msa0582830 | Msa0622390 | 0.808530 | 2.960770e-50 | -8.615850e-47 |
Msa0582830 | Msa0624220 | 0.801479 | 8.830887e-49 | -8.615850e-47 |
Msa0582830 | Msa0624240 | 0.832417 | 9.564476e-56 | -8.615850e-47 |
Msa0582830 | Msa0626890 | 0.803764 | 2.983328e-49 | -8.615850e-47 |
Msa0582830 | Msa0640880 | 0.808305 | 3.306305e-50 | -8.615850e-47 |
Msa0582830 | Msa0647110 | 0.832502 | 9.111442e-56 | -8.615850e-47 |
Msa0582830 | Msa0653710 | 0.800544 | 1.371506e-48 | -8.615850e-47 |
Msa0582830 | Msa0659640 | 0.811597 | 6.466239e-51 | -8.615850e-47 |
Msa0582830 | Msa0698900 | 0.815398 | 9.435118e-52 | -8.615850e-47 |
Msa0582830 | Msa0702070 | 0.823453 | 1.373617e-53 | -8.615850e-47 |
Msa0582830 | Msa0702120 | 0.821423 | 4.068828e-53 | -8.615850e-47 |
Msa0582830 | Msa0704570 | 0.802335 | 5.890010e-49 | -8.615850e-47 |
Msa0582830 | Msa0704750 | 0.814900 | 1.216970e-51 | -8.615850e-47 |
Msa0582830 | Msa0705610 | 0.801631 | 8.221409e-49 | -8.615850e-47 |
Msa0582830 | Msa0706710 | 0.801729 | 7.848317e-49 | -8.615850e-47 |
Msa0582830 | Msa0727020 | 0.846346 | 2.300722e-59 | -8.615850e-47 |
Msa0582830 | Msa0736930 | 0.808163 | 3.545054e-50 | -8.615850e-47 |
Msa0582830 | Msa0740420 | 0.800365 | 1.491701e-48 | -8.615850e-47 |
Msa0582830 | Msa0766880 | 0.849858 | 2.468686e-60 | -8.615850e-47 |
Msa0582830 | Msa0772210 | 0.824969 | 6.050999e-54 | -8.615850e-47 |
Msa0582830 | Msa0782330 | 0.800072 | 1.710966e-48 | -8.615850e-47 |
Msa0582830 | Msa0804930 | 0.832193 | 1.087212e-55 | -8.615850e-47 |
Msa0582830 | Msa0821490 | 0.813352 | 2.673252e-51 | -8.615850e-47 |
Msa0582830 | Msa0855490 | 0.824581 | 7.471105e-54 | -8.615850e-47 |
Msa0582830 | Msa0867990 | 0.806523 | 7.892386e-50 | -8.615850e-47 |
Msa0582830 | Msa0924820 | 0.808046 | 3.754220e-50 | -8.615850e-47 |
Msa0582830 | Msa0924860 | 0.831389 | 1.715863e-55 | -8.615850e-47 |
Msa0582830 | Msa0924890 | 0.820775 | 5.738379e-53 | -8.615850e-47 |
Msa0582830 | Msa0925020 | 0.821548 | 3.807589e-53 | -8.615850e-47 |
Msa0582830 | Msa0931090 | 0.909216 | 7.277964e-82 | -8.615850e-47 |
Msa0582830 | Msa0931150 | 0.924316 | 8.294198e-90 | -8.615850e-47 |
Msa0582830 | Msa0931200 | 0.804459 | 2.138933e-49 | -8.615850e-47 |
Msa0582830 | Msa0931280 | 0.891889 | 2.629138e-74 | -8.615850e-47 |
Msa0582830 | Msa0983670 | 0.824891 | 6.313928e-54 | -8.615850e-47 |
Msa0582830 | Msa0983710 | 0.816238 | 6.129614e-52 | -8.615850e-47 |
Msa0582830 | Msa0992570 | 0.833677 | 4.647359e-56 | -8.615850e-47 |
Msa0582830 | Msa0992590 | 0.823946 | 1.053414e-53 | -8.615850e-47 |
Msa0582830 | Msa1002040 | 0.809951 | 1.468123e-50 | -8.615850e-47 |
Msa0582830 | Msa1030280 | 0.834535 | 2.833470e-56 | -8.615850e-47 |
Msa0582830 | Msa1070900 | 0.811574 | 6.539173e-51 | -8.615850e-47 |
Msa0582830 | Msa1086020 | 0.860523 | 1.946871e-63 | -8.615850e-47 |
Msa0582830 | Msa1086060 | 0.871105 | 8.803601e-67 | -8.615850e-47 |
Msa0582830 | Msa1086160 | 0.878620 | 2.423579e-69 | -8.615850e-47 |
Msa0582830 | Msa1086170 | 0.888614 | 5.048089e-73 | -8.615850e-47 |
Msa0582830 | Msa1086260 | 0.845047 | 5.181758e-59 | -8.615850e-47 |
Msa0582830 | Msa1086290 | 0.906516 | 1.364987e-80 | -8.615850e-47 |
Msa0582830 | Msa1086330 | 0.822696 | 2.062755e-53 | -8.615850e-47 |
Msa0582830 | Msa1086340 | 0.834375 | 3.107869e-56 | -8.615850e-47 |
Msa0582830 | Msa1086370 | 0.869732 | 2.484429e-66 | -8.615850e-47 |
Msa0582830 | Msa1086440 | 0.854609 | 1.098077e-61 | -8.615850e-47 |
Msa0582830 | Msa1086480 | 0.893655 | 5.133094e-75 | -8.615850e-47 |
Msa0582830 | Msa1086520 | 0.827756 | 1.312062e-54 | -8.615850e-47 |
Msa0582830 | Msa1086630 | 0.846631 | 1.924274e-59 | -8.615850e-47 |
Msa0582830 | Msa1086690 | 0.836615 | 8.437133e-57 | -8.615850e-47 |
Msa0582830 | Msa1086830 | 0.845531 | 3.831603e-59 | -8.615850e-47 |
Msa0582830 | Msa1086870 | 0.860204 | 2.431863e-63 | -8.615850e-47 |
Msa0582830 | Msa1090230 | 0.821868 | 3.211930e-53 | -8.615850e-47 |
Msa0582830 | Msa1091690 | 0.857209 | 1.907917e-62 | -8.615850e-47 |
Msa0582830 | Msa1124440 | 0.810253 | 1.263850e-50 | -8.615850e-47 |
Msa0582830 | Msa1130700 | 0.814409 | 1.563872e-51 | -8.615850e-47 |
Msa0582830 | Msa1132540 | 0.801249 | 9.843967e-49 | -8.615850e-47 |
Msa0582830 | Msa1143140 | 0.856555 | 2.972096e-62 | -8.615850e-47 |
Msa0582830 | Msa1143150 | 0.808936 | 2.424626e-50 | -8.615850e-47 |
Msa0582830 | Msa1157160 | 0.829916 | 3.938556e-55 | -8.615850e-47 |
Msa0582830 | Msa1173410 | 0.809591 | 1.754676e-50 | -8.615850e-47 |
Msa0582830 | Msa1195860 | 0.829435 | 5.155471e-55 | -8.615850e-47 |
Msa0582830 | Msa1198420 | 0.810207 | 1.292899e-50 | -8.615850e-47 |
Msa0582830 | Msa1209390 | 0.815253 | 1.016081e-51 | -8.615850e-47 |
Msa0582830 | Msa1220740 | 0.809197 | 2.131553e-50 | -8.615850e-47 |
Msa0582830 | Msa1248400 | 0.814749 | 1.314964e-51 | -8.615850e-47 |
Msa0582830 | Msa1252040 | 0.806851 | 6.729225e-50 | -8.615850e-47 |
Msa0582830 | Msa1284030 | 0.808087 | 3.678741e-50 | -8.615850e-47 |
Msa0582830 | Msa1298740 | 0.816657 | 4.940466e-52 | -8.615850e-47 |
Msa0582830 | Msa1302920 | 0.812848 | 3.447968e-51 | -8.615850e-47 |
Msa0582830 | Msa1309910 | 0.814930 | 1.198680e-51 | -8.615850e-47 |
Msa0582830 | Msa1327820 | 0.834381 | 3.097949e-56 | -8.615850e-47 |
Msa0582830 | Msa1331900 | 0.814798 | 1.282251e-51 | -8.615850e-47 |
Msa0582830 | Msa1334650 | 0.804877 | 1.749180e-49 | -8.615850e-47 |
Msa0582830 | Msa1339250 | 0.824250 | 8.938274e-54 | -8.615850e-47 |
Msa0582830 | Msa1342030 | 0.804191 | 2.431409e-49 | -8.615850e-47 |
Msa0582830 | Msa1351560 | 0.802790 | 4.745549e-49 | -8.615850e-47 |
Msa0582830 | Msa1352820 | 0.803897 | 2.800003e-49 | -8.615850e-47 |
Msa0582830 | Msa1354850 | 0.864008 | 1.655827e-64 | -8.615850e-47 |
Msa0582830 | Msa1354890 | 0.877389 | 6.538352e-69 | -8.615850e-47 |
Msa0582830 | Msa1355020 | 0.849847 | 2.486789e-60 | -8.615850e-47 |
Msa0582830 | Msa1355060 | 0.864103 | 1.547090e-64 | -8.615850e-47 |
Msa0582830 | Msa1365210 | 0.811481 | 6.850747e-51 | -8.615850e-47 |
Msa0582830 | Msa1367940 | 0.814796 | 1.283741e-51 | -8.615850e-47 |
Msa0582830 | Msa1371250 | 0.807159 | 5.791447e-50 | -8.615850e-47 |
Msa0582830 | Msa1380540 | 0.835094 | 2.049329e-56 | -8.615850e-47 |
Msa0582830 | Msa1380580 | 0.803324 | 3.681047e-49 | -8.615850e-47 |
Msa0582830 | Msa1385940 | 0.827294 | 1.693429e-54 | -8.615850e-47 |
Msa0582830 | Msa1394050 | 0.821588 | 3.727142e-53 | -8.615850e-47 |
Msa0582830 | Msa1394090 | 0.846350 | 2.295600e-59 | -8.615850e-47 |
Msa0582830 | Msa1394100 | 0.835380 | 1.735315e-56 | -8.615850e-47 |
Msa0582830 | Msa1394140 | 0.819644 | 1.042472e-52 | -8.615850e-47 |
Msa0582830 | Msa1394170 | 0.809915 | 1.494430e-50 | -8.615850e-47 |
Msa0582830 | Msa1394240 | 0.891070 | 5.556319e-74 | -8.615850e-47 |
Msa0582830 | Msa1394280 | 0.845190 | 4.739013e-59 | -8.615850e-47 |
Msa0582830 | Msa1406230 | 0.823765 | 1.161013e-53 | -8.615850e-47 |
Msa0582830 | Msa1415120 | 0.823175 | 1.595602e-53 | -8.615850e-47 |
Msa0582830 | Msa1426870 | 0.827083 | 1.903081e-54 | -8.615850e-47 |
Msa0582830 | Msa1428990 | 0.800583 | 1.346388e-48 | -8.615850e-47 |
Msa0582830 | Msa1435470 | 0.806601 | 7.600797e-50 | -8.615850e-47 |
Msa0582830 | Msa1439800 | 0.803348 | 3.638319e-49 | -8.615850e-47 |
Msa0582830 | Msa1458920 | 0.806266 | 8.940415e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0582830 | MtrunA17_Chr4g0015681 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
Msa0582830 | MtrunA17_CPg0492901 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
Msa0582830 | MtrunA17_Chr4g0016771 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0582830 | ATCG00070.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 3.76e-26 | 92.0 |
Msa0582830 | ATCG00080.1 | 97.222 | 36 | 1 | 0 | 62 | 97 | 1 | 36 | 2.92e-19 | 73.9 |
Find 6 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGCTTAATATCTTTAGCT+TGG | 0.440922 | 4_2:-1254995 | Msa0582830:CDS |
ACTGGCATAAAATCTACAAT+TGG | 0.453871 | 4_2:+1254892 | None:intergenic |
AATGATCCAGGACGTAATCC+TGG | 0.474800 | 4_2:-1254345 | Msa0582830:CDS |
GGATTCCTATCTAATGATCC+AGG | 0.536202 | 4_2:-1254357 | Msa0582830:CDS |
TCACGTCCAGGATTACGTCC+TGG | 0.548081 | 4_2:+1254339 | None:intergenic |
TACGTCCTGGATCATTAGAT+AGG | 0.581605 | 4_2:+1254352 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTCCAAATATTAAAATTTT+TGG | - | chr4_2:1254621-1254640 | Msa0582830:intron | 10.0% |
!!! | TATCCAAAAATTTTAATATT+TGG | + | chr4_2:1254627-1254646 | None:intergenic | 10.0% |
!! | ATTTCAAAAAAAAAAAACTT+AGG | + | chr4_2:1254778-1254797 | None:intergenic | 10.0% |
!!! | AATTTTAATATTTGGAATCA+AGG | + | chr4_2:1254619-1254638 | None:intergenic | 15.0% |
!!! | CGTTTTTTTTTTAATTATCT+TGG | - | chr4_2:1254873-1254892 | Msa0582830:CDS | 15.0% |
!! | GAAAAAACTACTTGAATAAA+GGG | + | chr4_2:1254378-1254397 | None:intergenic | 20.0% |
!! | AGAAAAAACTACTTGAATAA+AGG | + | chr4_2:1254379-1254398 | None:intergenic | 20.0% |
!!! | TTATTCAAGTAGTTTTTTCT+TGG | - | chr4_2:1254379-1254398 | Msa0582830:CDS | 20.0% |
!! | TGAAAATTCTATTATTCGAT+TGG | - | chr4_2:1254665-1254684 | Msa0582830:intron | 20.0% |
!!! | TGTGGATATGAAAAAAATTT+TGG | - | chr4_2:1254716-1254735 | Msa0582830:intron | 20.0% |
!! | TCTTATAAACTTAGTATCAA+AGG | - | chr4_2:1254807-1254826 | Msa0582830:intron | 20.0% |
!!! | TTTTTCTCTTAGCTTTTGTT+TGG | - | chr4_2:1254471-1254490 | Msa0582830:intron | 25.0% |
!!! | TTTGTTTCTCTTTTCATCTT+CGG | - | chr4_2:1254948-1254967 | Msa0582830:CDS | 25.0% |
! | AATTGGATTCAAAAAAGCGT+AGG | + | chr4_2:1254420-1254439 | None:intergenic | 30.0% |
ACTGGCATAAAATCTACAAT+TGG | + | chr4_2:1254437-1254456 | None:intergenic | 30.0% | |
!! | AAAAAGAGTAAGGGTATTAC+TGG | + | chr4_2:1254455-1254474 | None:intergenic | 30.0% |
GCTAAGAGAAAAAAGAGTAA+GGG | + | chr4_2:1254464-1254483 | None:intergenic | 30.0% | |
AGCTAAGAGAAAAAAGAGTA+AGG | + | chr4_2:1254465-1254484 | None:intergenic | 30.0% | |
!! | AATCAAGATCTAGGTATTGG+TGG | + | chr4_2:1254697-1254716 | None:intergenic | 35.0% |
CACAATCAAGATCTAGGTAT+TGG | + | chr4_2:1254700-1254719 | None:intergenic | 35.0% | |
CAATACCTAGATCTTGATTG+TGG | - | chr4_2:1254698-1254717 | Msa0582830:intron | 35.0% | |
CATATCCACAATCAAGATCT+AGG | + | chr4_2:1254706-1254725 | None:intergenic | 35.0% | |
GAGAATCTATTCTCTTTCTC+TGG | - | chr4_2:1254850-1254869 | Msa0582830:CDS | 35.0% | |
! | TTCAAAAAAGCGTAGGCTTC+AGG | + | chr4_2:1254413-1254432 | None:intergenic | 40.0% |
GGATTCCTATCTAATGATCC+AGG | - | chr4_2:1254969-1254988 | Msa0582830:CDS | 40.0% | |
TACGTCCTGGATCATTAGAT+AGG | + | chr4_2:1254977-1254996 | None:intergenic | 40.0% | |
!! | CAAGATCTAGGTATTGGTGG+TGG | + | chr4_2:1254694-1254713 | None:intergenic | 45.0% |
AATGATCCAGGACGTAATCC+TGG | - | chr4_2:1254981-1255000 | Msa0582830:CDS | 45.0% | |
!!! | AATAAATTCTTAATTTTTTT+CGG | + | chr4_2:1254542-1254561 | None:intergenic | 5.0% |
TCACGTCCAGGATTACGTCC+TGG | + | chr4_2:1254990-1255009 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 1254332 | 1255016 | 1254332 | ID=Msa0582830;Name=Msa0582830 |
chr4_2 | mRNA | 1254332 | 1255016 | 1254332 | ID=Msa0582830-mRNA-1;Parent=Msa0582830;Name=Msa0582830-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|97 |
chr4_2 | exon | 1254842 | 1255016 | 1254842 | ID=Msa0582830-mRNA-1:exon:301;Parent=Msa0582830-mRNA-1 |
chr4_2 | exon | 1254332 | 1254450 | 1254332 | ID=Msa0582830-mRNA-1:exon:300;Parent=Msa0582830-mRNA-1 |
chr4_2 | CDS | 1254842 | 1255016 | 1254842 | ID=Msa0582830-mRNA-1:cds;Parent=Msa0582830-mRNA-1 |
chr4_2 | CDS | 1254332 | 1254450 | 1254332 | ID=Msa0582830-mRNA-1:cds;Parent=Msa0582830-mRNA-1 |
Gene Sequence |
Protein sequence |