Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354890 | RDY14692.1 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 7.75e-56 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354890 | sp|Q49L15|PSBK_EUCGG | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.80e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354890 | A0A371II05 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 3.70e-56 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1354890 | 0.808884 | 2.487312e-50 | -8.615850e-47 |
| Msa0017120 | Msa1354890 | 0.806639 | 7.460355e-50 | -8.615850e-47 |
| Msa0028610 | Msa1354890 | 0.801554 | 8.523919e-49 | -8.615850e-47 |
| Msa0035090 | Msa1354890 | 0.820701 | 5.970065e-53 | -8.615850e-47 |
| Msa0040190 | Msa1354890 | 0.818449 | 1.948986e-52 | -8.615850e-47 |
| Msa0065390 | Msa1354890 | 0.803498 | 3.388373e-49 | -8.615850e-47 |
| Msa0092750 | Msa1354890 | 0.802134 | 6.479318e-49 | -8.615850e-47 |
| Msa0094420 | Msa1354890 | 0.800822 | 1.203282e-48 | -8.615850e-47 |
| Msa0095140 | Msa1354890 | 0.851613 | 7.918596e-61 | -8.615850e-47 |
| Msa0095180 | Msa1354890 | 0.861228 | 1.188807e-63 | -8.615850e-47 |
| Msa0095200 | Msa1354890 | 0.859050 | 5.408574e-63 | -8.615850e-47 |
| Msa0095240 | Msa1354890 | 0.817170 | 3.789071e-52 | -8.615850e-47 |
| Msa0095270 | Msa1354890 | 0.841375 | 4.938105e-58 | -8.615850e-47 |
| Msa0095300 | Msa1354890 | 0.843339 | 1.489260e-58 | -8.615850e-47 |
| Msa0110710 | Msa1354890 | 0.804649 | 1.951819e-49 | -8.615850e-47 |
| Msa1352820 | Msa1354890 | 0.803172 | 3.957984e-49 | -8.615850e-47 |
| Msa1354850 | Msa1354890 | 0.836664 | 8.194079e-57 | -8.615850e-47 |
| Msa1354890 | Msa1355020 | 0.821452 | 4.008132e-53 | -8.615850e-47 |
| Msa1354890 | Msa1355060 | 0.917640 | 4.150017e-86 | -8.615850e-47 |
| Msa1354890 | Msa1367940 | 0.822503 | 2.287468e-53 | -8.615850e-47 |
| Msa1354890 | Msa1380540 | 0.818629 | 1.774099e-52 | -8.615850e-47 |
| Msa1354890 | Msa1380580 | 0.855664 | 5.418988e-62 | -8.615850e-47 |
| Msa1354890 | Msa1385940 | 0.800709 | 1.269059e-48 | -8.615850e-47 |
| Msa1354890 | Msa1394050 | 0.844718 | 6.356007e-59 | -8.615850e-47 |
| Msa1354890 | Msa1394090 | 0.829499 | 4.974253e-55 | -8.615850e-47 |
| Msa1354890 | Msa1394100 | 0.817158 | 3.812497e-52 | -8.615850e-47 |
| Msa1354890 | Msa1394140 | 0.885810 | 5.897513e-72 | -8.615850e-47 |
| Msa1354890 | Msa1394170 | 0.810972 | 8.835614e-51 | -8.615850e-47 |
| Msa1354890 | Msa1394240 | 0.907943 | 2.932676e-81 | -8.615850e-47 |
| Msa1354890 | Msa1394280 | 0.804052 | 2.599312e-49 | -8.615850e-47 |
| Msa1354890 | Msa1406230 | 0.807077 | 6.028736e-50 | -8.615850e-47 |
| Msa1354890 | Msa1415120 | 0.807674 | 4.503746e-50 | -8.615850e-47 |
| Msa1354890 | Msa1422750 | 0.807435 | 5.060977e-50 | -8.615850e-47 |
| Msa1354890 | Msa1442300 | 0.812208 | 4.758482e-51 | -8.615850e-47 |
| Msa0606140 | Msa1354890 | 0.818852 | 1.578701e-52 | -8.615850e-47 |
| Msa0640880 | Msa1354890 | 0.809437 | 1.893177e-50 | -8.615850e-47 |
| Msa0647110 | Msa1354890 | 0.803579 | 3.258678e-49 | -8.615850e-47 |
| Msa0681890 | Msa1354890 | 0.804068 | 2.579892e-49 | -8.615850e-47 |
| Msa0686610 | Msa1354890 | 0.807999 | 3.841296e-50 | -8.615850e-47 |
| Msa0702070 | Msa1354890 | 0.813234 | 2.837729e-51 | -8.615850e-47 |
| Msa0702120 | Msa1354890 | 0.803381 | 3.581763e-49 | -8.615850e-47 |
| Msa0727020 | Msa1354890 | 0.829104 | 6.204340e-55 | -8.615850e-47 |
| Msa0739570 | Msa1354890 | 0.810583 | 1.072714e-50 | -8.615850e-47 |
| Msa0766880 | Msa1354890 | 0.821477 | 3.954733e-53 | -8.615850e-47 |
| Msa0772210 | Msa1354890 | 0.825985 | 3.476551e-54 | -8.615850e-47 |
| Msa0782330 | Msa1354890 | 0.827273 | 1.713523e-54 | -8.615850e-47 |
| Msa0804930 | Msa1354890 | 0.815855 | 7.465844e-52 | -8.615850e-47 |
| Msa0130120 | Msa1354890 | 0.803400 | 3.549879e-49 | -8.615850e-47 |
| Msa0134550 | Msa1354890 | 0.816492 | 5.377154e-52 | -8.615850e-47 |
| Msa0139740 | Msa1354890 | 0.814047 | 1.879198e-51 | -8.615850e-47 |
| Msa0141670 | Msa1354890 | 0.811219 | 7.811897e-51 | -8.615850e-47 |
| Msa0146470 | Msa1354890 | 0.807669 | 4.516057e-50 | -8.615850e-47 |
| Msa0175900 | Msa1354890 | 0.828204 | 1.024002e-54 | -8.615850e-47 |
| Msa0221860 | Msa1354890 | 0.820107 | 8.166355e-53 | -8.615850e-47 |
| Msa0222070 | Msa1354890 | 0.832128 | 1.128084e-55 | -8.615850e-47 |
| Msa0222120 | Msa1354890 | 0.830950 | 2.199600e-55 | -8.615850e-47 |
| Msa0224960 | Msa1354890 | 0.806506 | 7.956900e-50 | -8.615850e-47 |
| Msa0225010 | Msa1354890 | 0.816280 | 5.999605e-52 | -8.615850e-47 |
| Msa0227290 | Msa1354890 | 0.822011 | 2.976318e-53 | -8.615850e-47 |
| Msa1284030 | Msa1354890 | 0.816409 | 5.613751e-52 | -8.615850e-47 |
| Msa1298740 | Msa1354890 | 0.827802 | 1.279050e-54 | -8.615850e-47 |
| Msa1309910 | Msa1354890 | 0.819334 | 1.226765e-52 | -8.615850e-47 |
| Msa1323060 | Msa1354890 | 0.815251 | 1.017113e-51 | -8.615850e-47 |
| Msa1327820 | Msa1354890 | 0.808029 | 3.784661e-50 | -8.615850e-47 |
| Msa1342030 | Msa1354890 | 0.839793 | 1.280918e-57 | -8.615850e-47 |
| Msa0365150 | Msa1354890 | 0.816842 | 4.489459e-52 | -8.615850e-47 |
| Msa0417630 | Msa1354890 | 0.815487 | 9.016266e-52 | -8.615850e-47 |
| Msa0421800 | Msa1354890 | 0.804249 | 2.365270e-49 | -8.615850e-47 |
| Msa0427050 | Msa1354890 | 0.802555 | 5.307595e-49 | -8.615850e-47 |
| Msa0434630 | Msa1354890 | 0.803220 | 3.867539e-49 | -8.615850e-47 |
| Msa0449930 | Msa1354890 | 0.803297 | 3.729068e-49 | -8.615850e-47 |
| Msa0473450 | Msa1354890 | 0.802116 | 6.534313e-49 | -8.615850e-47 |
| Msa0482020 | Msa1354890 | 0.824029 | 1.006999e-53 | -8.615850e-47 |
| Msa0983670 | Msa1354890 | 0.800843 | 1.191690e-48 | -8.615850e-47 |
| Msa0983710 | Msa1354890 | 0.850052 | 2.178333e-60 | -8.615850e-47 |
| Msa0992570 | Msa1354890 | 0.829892 | 3.991264e-55 | -8.615850e-47 |
| Msa0992590 | Msa1354890 | 0.839715 | 1.342772e-57 | -8.615850e-47 |
| Msa1002040 | Msa1354890 | 0.839321 | 1.699824e-57 | -8.615850e-47 |
| Msa1022310 | Msa1354890 | 0.813400 | 2.609590e-51 | -8.615850e-47 |
| Msa1024580 | Msa1354890 | 0.800553 | 1.365203e-48 | -8.615850e-47 |
| Msa1030280 | Msa1354890 | 0.857507 | 1.557503e-62 | -8.615850e-47 |
| Msa1049440 | Msa1354890 | 0.801036 | 1.088400e-48 | -8.615850e-47 |
| Msa1070900 | Msa1354890 | 0.832183 | 1.093102e-55 | -8.615850e-47 |
| Msa1086020 | Msa1354890 | 0.836556 | 8.733918e-57 | -8.615850e-47 |
| Msa1086060 | Msa1354890 | 0.891442 | 3.958853e-74 | -8.615850e-47 |
| Msa1086160 | Msa1354890 | 0.878230 | 3.322930e-69 | -8.615850e-47 |
| Msa1086170 | Msa1354890 | 0.904486 | 1.166883e-79 | -8.615850e-47 |
| Msa1086260 | Msa1354890 | 0.814876 | 1.232167e-51 | -8.615850e-47 |
| Msa1086290 | Msa1354890 | 0.889153 | 3.125598e-73 | -8.615850e-47 |
| Msa1086330 | Msa1354890 | 0.802056 | 6.724185e-49 | -8.615850e-47 |
| Msa1086340 | Msa1354890 | 0.826162 | 3.155048e-54 | -8.615850e-47 |
| Msa1086370 | Msa1354890 | 0.880907 | 3.726386e-70 | -8.615850e-47 |
| Msa1086440 | Msa1354890 | 0.862248 | 5.796150e-64 | -8.615850e-47 |
| Msa1086480 | Msa1354890 | 0.874286 | 7.606198e-68 | -8.615850e-47 |
| Msa1086520 | Msa1354890 | 0.809618 | 1.730971e-50 | -8.615850e-47 |
| Msa1086630 | Msa1354890 | 0.813587 | 2.373377e-51 | -8.615850e-47 |
| Msa1086690 | Msa1354890 | 0.821560 | 3.784835e-53 | -8.615850e-47 |
| Msa1086830 | Msa1354890 | 0.816981 | 4.178624e-52 | -8.615850e-47 |
| Msa1086870 | Msa1354890 | 0.870225 | 1.713304e-66 | -8.615850e-47 |
| Msa1090230 | Msa1354890 | 0.806534 | 7.849865e-50 | -8.615850e-47 |
| Msa1091690 | Msa1354890 | 0.837745 | 4.335253e-57 | -8.615850e-47 |
| Msa0263620 | Msa1354890 | 0.830474 | 2.877464e-55 | -8.615850e-47 |
| Msa0268180 | Msa1354890 | 0.910793 | 1.258470e-82 | -8.615850e-47 |
| Msa0268220 | Msa1354890 | 0.808524 | 2.968330e-50 | -8.615850e-47 |
| Msa0268340 | Msa1354890 | 0.833326 | 5.688723e-56 | -8.615850e-47 |
| Msa0268380 | Msa1354890 | 0.895621 | 8.050028e-76 | -8.615850e-47 |
| Msa0268420 | Msa1354890 | 0.898124 | 7.214389e-77 | -8.615850e-47 |
| Msa0268460 | Msa1354890 | 0.828845 | 7.166128e-55 | -8.615850e-47 |
| Msa0268500 | Msa1354890 | 0.828402 | 9.170775e-55 | -8.615850e-47 |
| Msa0268540 | Msa1354890 | 0.903096 | 4.935458e-79 | -8.615850e-47 |
| Msa0268650 | Msa1354890 | 0.899956 | 1.185470e-77 | -8.615850e-47 |
| Msa0268680 | Msa1354890 | 0.800867 | 1.178235e-48 | -8.615850e-47 |
| Msa0268690 | Msa1354890 | 0.826553 | 2.547220e-54 | -8.615850e-47 |
| Msa0268730 | Msa1354890 | 0.890338 | 1.078601e-73 | -8.615850e-47 |
| Msa0268760 | Msa1354890 | 0.802380 | 5.765542e-49 | -8.615850e-47 |
| Msa0268850 | Msa1354890 | 0.899390 | 2.078166e-77 | -8.615850e-47 |
| Msa0268900 | Msa1354890 | 0.825839 | 3.766224e-54 | -8.615850e-47 |
| Msa0268930 | Msa1354890 | 0.890206 | 1.215109e-73 | -8.615850e-47 |
| Msa0269060 | Msa1354890 | 0.900142 | 9.848361e-78 | -8.615850e-47 |
| Msa0269100 | Msa1354890 | 0.818601 | 1.800166e-52 | -8.615850e-47 |
| Msa0301460 | Msa1354890 | 0.813922 | 2.003170e-51 | -8.615850e-47 |
| Msa0306130 | Msa1354890 | 0.826316 | 2.899832e-54 | -8.615850e-47 |
| Msa0344200 | Msa1354890 | 0.863684 | 2.087856e-64 | -8.615850e-47 |
| Msa0344250 | Msa1354890 | 0.804068 | 2.579324e-49 | -8.615850e-47 |
| Msa0344290 | Msa1354890 | 0.814097 | 1.832183e-51 | -8.615850e-47 |
| Msa1120540 | Msa1354890 | 0.823322 | 1.474694e-53 | -8.615850e-47 |
| Msa1123340 | Msa1354890 | 0.809710 | 1.654119e-50 | -8.615850e-47 |
| Msa1128350 | Msa1354890 | 0.803481 | 3.415380e-49 | -8.615850e-47 |
| Msa1143140 | Msa1354890 | 0.885013 | 1.171821e-71 | -8.615850e-47 |
| Msa1143150 | Msa1354890 | 0.873418 | 1.493472e-67 | -8.615850e-47 |
| Msa1157160 | Msa1354890 | 0.820978 | 5.154706e-53 | -8.615850e-47 |
| Msa1209390 | Msa1354890 | 0.823883 | 1.089965e-53 | -8.615850e-47 |
| Msa0514260 | Msa1354890 | 0.800250 | 1.573939e-48 | -8.615850e-47 |
| Msa0530210 | Msa1354890 | 0.805896 | 1.069857e-49 | -8.615850e-47 |
| Msa0536170 | Msa1354890 | 0.807342 | 5.296500e-50 | -8.615850e-47 |
| Msa0540340 | Msa1354890 | 0.812752 | 3.618813e-51 | -8.615850e-47 |
| Msa0547050 | Msa1354890 | 0.810329 | 1.216708e-50 | -8.615850e-47 |
| Msa0558890 | Msa1354890 | 0.802353 | 5.841656e-49 | -8.615850e-47 |
| Msa0582530 | Msa1354890 | 0.900646 | 5.946860e-78 | -8.615850e-47 |
| Msa0582570 | Msa1354890 | 0.809701 | 1.661086e-50 | -8.615850e-47 |
| Msa0582580 | Msa1354890 | 0.835575 | 1.549347e-56 | -8.615850e-47 |
| Msa0582620 | Msa1354890 | 0.879970 | 8.060611e-70 | -8.615850e-47 |
| Msa0582710 | Msa1354890 | 0.877640 | 5.342381e-69 | -8.615850e-47 |
| Msa0582740 | Msa1354890 | 0.918894 | 8.868017e-87 | -8.615850e-47 |
| Msa0582830 | Msa1354890 | 0.877389 | 6.538352e-69 | -8.615850e-47 |
| Msa0582900 | Msa1354890 | 0.874393 | 6.993529e-68 | -8.615850e-47 |
| Msa0591370 | Msa1354890 | 0.813436 | 2.561939e-51 | -8.615850e-47 |
| Msa0595780 | Msa1354890 | 0.807898 | 4.036823e-50 | -8.615850e-47 |
| Msa0860270 | Msa1354890 | 0.820149 | 7.989643e-53 | -8.615850e-47 |
| Msa0900320 | Msa1354890 | 0.816976 | 4.189355e-52 | -8.615850e-47 |
| Msa0924860 | Msa1354890 | 0.860082 | 2.647165e-63 | -8.615850e-47 |
| Msa0924890 | Msa1354890 | 0.815639 | 8.338030e-52 | -8.615850e-47 |
| Msa0931090 | Msa1354890 | 0.897847 | 9.453611e-77 | -8.615850e-47 |
| Msa0931150 | Msa1354890 | 0.877862 | 4.469609e-69 | -8.615850e-47 |
| Msa0931200 | Msa1354890 | 0.870878 | 1.046013e-66 | -8.615850e-47 |
| Msa0931280 | Msa1354890 | 0.852919 | 3.365612e-61 | -8.615850e-47 |
| Msa0965960 | Msa1354890 | 0.804613 | 1.985604e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354890 | MtrunA17_Chr4g0015681 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa1354890 | MtrunA17_CPg0492901 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa1354890 | MtrunA17_Chr4g0016771 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354890 | ATCG00070.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 3.76e-26 | 92.0 |
| Msa1354890 | ATCG00080.1 | 97.222 | 36 | 1 | 0 | 62 | 97 | 1 | 36 | 2.92e-19 | 73.9 |
Find 6 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTTAATATCTTTAGCT+TGG | 0.440922 | tig0014543:+580514 | None:intergenic |
| ACTGGCATAAAATCTACAAT+TGG | 0.453871 | tig0014543:-580617 | None:intergenic |
| AATGATCCAGGACGTAATCC+TGG | 0.474800 | tig0014543:+581164 | Msa1354890:CDS |
| GGATTCCTATCTAATGATCC+AGG | 0.536202 | tig0014543:+581152 | Msa1354890:CDS |
| TCACGTCCAGGATTACGTCC+TGG | 0.548081 | tig0014543:-581170 | None:intergenic |
| TACGTCCTGGATCATTAGAT+AGG | 0.581605 | tig0014543:-581157 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAATATTAAAATTTT+TGG | + | tig0014543:580804-580823 | Msa1354890:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | - | tig0014543:580810-580829 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | - | tig0014543:580961-580980 | None:intergenic | 10.0% |
| !!! | ATTCCAAATATTAAAATTTT+TGG | + | tig0014543:580804-580823 | Msa1354890:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | - | tig0014543:580810-580829 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | - | tig0014543:580961-580980 | None:intergenic | 10.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | - | tig0014543:580802-580821 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAATTATCT+TGG | + | tig0014543:581056-581075 | Msa1354890:intron | 15.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | - | tig0014543:580802-580821 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAATTATCT+TGG | + | tig0014543:581056-581075 | Msa1354890:intron | 15.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | - | tig0014543:580561-580580 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | - | tig0014543:580562-580581 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | + | tig0014543:580562-580581 | Msa1354890:CDS | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | + | tig0014543:580848-580867 | Msa1354890:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | + | tig0014543:580899-580918 | Msa1354890:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | + | tig0014543:580990-581009 | Msa1354890:intron | 20.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | - | tig0014543:580561-580580 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | - | tig0014543:580562-580581 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | + | tig0014543:580562-580581 | Msa1354890:CDS | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | + | tig0014543:580848-580867 | Msa1354890:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | + | tig0014543:580899-580918 | Msa1354890:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | + | tig0014543:580990-581009 | Msa1354890:intron | 20.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | + | tig0014543:580654-580673 | Msa1354890:CDS | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | + | tig0014543:581131-581150 | Msa1354890:CDS | 25.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | + | tig0014543:580654-580673 | Msa1354890:CDS | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | + | tig0014543:581131-581150 | Msa1354890:CDS | 25.0% |
| ! | AATTGGATTCAAAAAAGCGT+AGG | - | tig0014543:580603-580622 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | - | tig0014543:580620-580639 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | - | tig0014543:580638-580657 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | - | tig0014543:580647-580666 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | - | tig0014543:580648-580667 | None:intergenic | 30.0% | |
| ! | AATTGGATTCAAAAAAGCGT+AGG | - | tig0014543:580603-580622 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | - | tig0014543:580620-580639 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | - | tig0014543:580638-580657 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | - | tig0014543:580647-580666 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | - | tig0014543:580648-580667 | None:intergenic | 30.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | - | tig0014543:580880-580899 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | - | tig0014543:580883-580902 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | + | tig0014543:580881-580900 | Msa1354890:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | - | tig0014543:580889-580908 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | + | tig0014543:581033-581052 | Msa1354890:intron | 35.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | - | tig0014543:580880-580899 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | - | tig0014543:580883-580902 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | + | tig0014543:580881-580900 | Msa1354890:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | - | tig0014543:580889-580908 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | + | tig0014543:581033-581052 | Msa1354890:intron | 35.0% | |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | - | tig0014543:580596-580615 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | + | tig0014543:581152-581171 | Msa1354890:CDS | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | - | tig0014543:581160-581179 | None:intergenic | 40.0% | |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | - | tig0014543:580596-580615 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | + | tig0014543:581152-581171 | Msa1354890:CDS | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | - | tig0014543:581160-581179 | None:intergenic | 40.0% | |
| !! | CAAGATCTAGGTATTGGTGG+TGG | - | tig0014543:580877-580896 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | + | tig0014543:581164-581183 | Msa1354890:CDS | 45.0% | |
| !! | CAAGATCTAGGTATTGGTGG+TGG | - | tig0014543:580877-580896 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | + | tig0014543:581164-581183 | Msa1354890:CDS | 45.0% | |
| !!! | AATAAATTCTTAATTTTTTT+CGG | - | tig0014543:580725-580744 | None:intergenic | 5.0% |
| !!! | AATAAATTCTTAATTTTTTT+CGG | - | tig0014543:580725-580744 | None:intergenic | 5.0% |
| TCACGTCCAGGATTACGTCC+TGG | - | tig0014543:581173-581192 | None:intergenic | 55.0% | |
| TCACGTCCAGGATTACGTCC+TGG | - | tig0014543:581173-581192 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 580515 | 581199 | 580515 | ID=Msa1354890;Name=Msa1354890 |
| tig0014543 | mRNA | 580515 | 581199 | 580515 | ID=Msa1354890-mRNA-1;Parent=Msa1354890;Name=Msa1354890-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|97 |
| tig0014543 | exon | 580515 | 580689 | 580515 | ID=Msa1354890-mRNA-1:exon:9264;Parent=Msa1354890-mRNA-1 |
| tig0014543 | exon | 581081 | 581199 | 581081 | ID=Msa1354890-mRNA-1:exon:9265;Parent=Msa1354890-mRNA-1 |
| tig0014543 | CDS | 580515 | 580689 | 580515 | ID=Msa1354890-mRNA-1:cds;Parent=Msa1354890-mRNA-1 |
| tig0014543 | CDS | 581081 | 581199 | 581081 | ID=Msa1354890-mRNA-1:cds;Parent=Msa1354890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
