Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086290 | sp|Q49L15|PSBK_EUCGG | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.80e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086290 | A0A371II05 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 3.70e-56 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035090 | Msa1086290 | 0.827359 | 1.633784e-54 | -8.615850e-47 |
| Msa0039200 | Msa1086290 | 0.806401 | 8.373489e-50 | -8.615850e-47 |
| Msa0040190 | Msa1086290 | 0.813518 | 2.457583e-51 | -8.615850e-47 |
| Msa0083570 | Msa1086290 | 0.812345 | 4.441909e-51 | -8.615850e-47 |
| Msa0086820 | Msa1086290 | 0.808399 | 3.156493e-50 | -8.615850e-47 |
| Msa0087880 | Msa1086290 | 0.802563 | 5.287481e-49 | -8.615850e-47 |
| Msa0092750 | Msa1086290 | 0.823512 | 1.331222e-53 | -8.615850e-47 |
| Msa0094420 | Msa1086290 | 0.810268 | 1.254025e-50 | -8.615850e-47 |
| Msa0095140 | Msa1086290 | 0.870787 | 1.120617e-66 | -8.615850e-47 |
| Msa0095180 | Msa1086290 | 0.819351 | 1.215362e-52 | -8.615850e-47 |
| Msa0095200 | Msa1086290 | 0.860713 | 1.705114e-63 | -8.615850e-47 |
| Msa0095240 | Msa1086290 | 0.835763 | 1.388749e-56 | -8.615850e-47 |
| Msa0095270 | Msa1086290 | 0.871791 | 5.220159e-67 | -8.615850e-47 |
| Msa0103060 | Msa1086290 | 0.806632 | 7.484292e-50 | -8.615850e-47 |
| Msa0619060 | Msa1086290 | 0.805270 | 1.447832e-49 | -8.615850e-47 |
| Msa0624240 | Msa1086290 | 0.807817 | 4.198938e-50 | -8.615850e-47 |
| Msa0640880 | Msa1086290 | 0.800079 | 1.705487e-48 | -8.615850e-47 |
| Msa0642910 | Msa1086290 | 0.805927 | 1.054079e-49 | -8.615850e-47 |
| Msa0647110 | Msa1086290 | 0.807828 | 4.177611e-50 | -8.615850e-47 |
| Msa0702070 | Msa1086290 | 0.811513 | 6.744638e-51 | -8.615850e-47 |
| Msa0702120 | Msa1086290 | 0.806459 | 8.143494e-50 | -8.615850e-47 |
| Msa0704570 | Msa1086290 | 0.803962 | 2.713676e-49 | -8.615850e-47 |
| Msa0706710 | Msa1086290 | 0.806418 | 8.304909e-50 | -8.615850e-47 |
| Msa0727020 | Msa1086290 | 0.831863 | 1.311356e-55 | -8.615850e-47 |
| Msa0739570 | Msa1086290 | 0.806850 | 6.732068e-50 | -8.615850e-47 |
| Msa0740420 | Msa1086290 | 0.800117 | 1.674909e-48 | -8.615850e-47 |
| Msa0766880 | Msa1086290 | 0.838452 | 2.851320e-57 | -8.615850e-47 |
| Msa0772210 | Msa1086290 | 0.827985 | 1.156200e-54 | -8.615850e-47 |
| Msa0782330 | Msa1086290 | 0.822448 | 2.356193e-53 | -8.615850e-47 |
| Msa0796450 | Msa1086290 | 0.801450 | 8.952931e-49 | -8.615850e-47 |
| Msa0804930 | Msa1086290 | 0.836855 | 7.325633e-57 | -8.615850e-47 |
| Msa0130120 | Msa1086290 | 0.823262 | 1.522559e-53 | -8.615850e-47 |
| Msa0133670 | Msa1086290 | 0.808661 | 2.775162e-50 | -8.615850e-47 |
| Msa0133880 | Msa1086290 | 0.809277 | 2.048817e-50 | -8.615850e-47 |
| Msa0134550 | Msa1086290 | 0.820929 | 5.288841e-53 | -8.615850e-47 |
| Msa0139740 | Msa1086290 | 0.826718 | 2.326613e-54 | -8.615850e-47 |
| Msa0141670 | Msa1086290 | 0.818637 | 1.767097e-52 | -8.615850e-47 |
| Msa0156780 | Msa1086290 | 0.803685 | 3.097717e-49 | -8.615850e-47 |
| Msa0157020 | Msa1086290 | 0.808359 | 3.219474e-50 | -8.615850e-47 |
| Msa0175900 | Msa1086290 | 0.829134 | 6.099568e-55 | -8.615850e-47 |
| Msa0184120 | Msa1086290 | 0.809863 | 1.533312e-50 | -8.615850e-47 |
| Msa0190000 | Msa1086290 | 0.818448 | 1.949971e-52 | -8.615850e-47 |
| Msa0221860 | Msa1086290 | 0.844213 | 8.689911e-59 | -8.615850e-47 |
| Msa0222070 | Msa1086290 | 0.808875 | 2.497407e-50 | -8.615850e-47 |
| Msa0222120 | Msa1086290 | 0.810164 | 1.320638e-50 | -8.615850e-47 |
| Msa0224960 | Msa1086290 | 0.813039 | 3.131282e-51 | -8.615850e-47 |
| Msa0225010 | Msa1086290 | 0.806748 | 7.075141e-50 | -8.615850e-47 |
| Msa0227290 | Msa1086290 | 0.810343 | 1.208497e-50 | -8.615850e-47 |
| Msa0365150 | Msa1086290 | 0.808154 | 3.560833e-50 | -8.615850e-47 |
| Msa0417630 | Msa1086290 | 0.801114 | 1.048886e-48 | -8.615850e-47 |
| Msa0427050 | Msa1086290 | 0.819110 | 1.379365e-52 | -8.615850e-47 |
| Msa0449930 | Msa1086290 | 0.806574 | 7.700544e-50 | -8.615850e-47 |
| Msa0464500 | Msa1086290 | 0.806494 | 8.003627e-50 | -8.615850e-47 |
| Msa0473450 | Msa1086290 | 0.807021 | 6.196218e-50 | -8.615850e-47 |
| Msa0482020 | Msa1086290 | 0.811026 | 8.598661e-51 | -8.615850e-47 |
| Msa0983670 | Msa1086290 | 0.838786 | 2.338208e-57 | -8.615850e-47 |
| Msa0983710 | Msa1086290 | 0.822966 | 1.785285e-53 | -8.615850e-47 |
| Msa0992570 | Msa1086290 | 0.817517 | 3.165069e-52 | -8.615850e-47 |
| Msa0992590 | Msa1086290 | 0.833185 | 6.166645e-56 | -8.615850e-47 |
| Msa1002040 | Msa1086290 | 0.825200 | 5.336006e-54 | -8.615850e-47 |
| Msa1022310 | Msa1086290 | 0.802751 | 4.834260e-49 | -8.615850e-47 |
| Msa1024580 | Msa1086290 | 0.819034 | 1.435683e-52 | -8.615850e-47 |
| Msa1030280 | Msa1086290 | 0.839065 | 1.979656e-57 | -8.615850e-47 |
| Msa1040770 | Msa1086290 | 0.811734 | 6.038031e-51 | -8.615850e-47 |
| Msa1049440 | Msa1086290 | 0.807088 | 5.995028e-50 | -8.615850e-47 |
| Msa1070900 | Msa1086290 | 0.807443 | 5.041068e-50 | -8.615850e-47 |
| Msa1079610 | Msa1086290 | 0.810009 | 1.426443e-50 | -8.615850e-47 |
| Msa1086020 | Msa1086290 | 0.854025 | 1.619491e-61 | -8.615850e-47 |
| Msa1086060 | Msa1086290 | 0.880518 | 5.139433e-70 | -8.615850e-47 |
| Msa1086160 | Msa1086290 | 0.900012 | 1.120806e-77 | -8.615850e-47 |
| Msa1086170 | Msa1086290 | 0.894151 | 3.230151e-75 | -8.615850e-47 |
| Msa1086260 | Msa1086290 | 0.828064 | 1.106580e-54 | -8.615850e-47 |
| Msa1086290 | Msa1086330 | 0.838893 | 2.194408e-57 | -8.615850e-47 |
| Msa1086290 | Msa1086340 | 0.840795 | 7.010305e-58 | -8.615850e-47 |
| Msa1086290 | Msa1086370 | 0.911335 | 6.832717e-83 | -8.615850e-47 |
| Msa1086290 | Msa1086410 | 0.811995 | 5.297420e-51 | -8.615850e-47 |
| Msa1086290 | Msa1086440 | 0.870022 | 1.997620e-66 | -8.615850e-47 |
| Msa1086290 | Msa1086480 | 0.911153 | 8.395387e-83 | -8.615850e-47 |
| Msa1086290 | Msa1086520 | 0.843542 | 1.314148e-58 | -8.615850e-47 |
| Msa1086290 | Msa1086630 | 0.842152 | 3.079497e-58 | -8.615850e-47 |
| Msa1086290 | Msa1086690 | 0.845140 | 4.888071e-59 | -8.615850e-47 |
| Msa1086290 | Msa1086830 | 0.848601 | 5.524602e-60 | -8.615850e-47 |
| Msa1086290 | Msa1086870 | 0.872037 | 4.326451e-67 | -8.615850e-47 |
| Msa1086290 | Msa1087000 | 0.811460 | 6.924250e-51 | -8.615850e-47 |
| Msa1086290 | Msa1090230 | 0.815868 | 7.414373e-52 | -8.615850e-47 |
| Msa1086290 | Msa1091690 | 0.887095 | 1.926826e-72 | -8.615850e-47 |
| Msa1086290 | Msa1123340 | 0.802476 | 5.508563e-49 | -8.615850e-47 |
| Msa1086290 | Msa1124440 | 0.800830 | 1.198908e-48 | -8.615850e-47 |
| Msa1086290 | Msa1128350 | 0.804077 | 2.568864e-49 | -8.615850e-47 |
| Msa1086290 | Msa1143140 | 0.868944 | 4.480362e-66 | -8.615850e-47 |
| Msa1086290 | Msa1143150 | 0.845074 | 5.094182e-59 | -8.615850e-47 |
| Msa1086290 | Msa1157160 | 0.847277 | 1.280710e-59 | -8.615850e-47 |
| Msa1086290 | Msa1166180 | 0.804479 | 2.117929e-49 | -8.615850e-47 |
| Msa1086290 | Msa1166280 | 0.802041 | 6.771867e-49 | -8.615850e-47 |
| Msa1086290 | Msa1195860 | 0.823171 | 1.599070e-53 | -8.615850e-47 |
| Msa1086290 | Msa1198420 | 0.802308 | 5.966308e-49 | -8.615850e-47 |
| Msa1086290 | Msa1209390 | 0.814902 | 1.215890e-51 | -8.615850e-47 |
| Msa1086290 | Msa1209650 | 0.802432 | 5.626757e-49 | -8.615850e-47 |
| Msa1086290 | Msa1220740 | 0.805788 | 1.127161e-49 | -8.615850e-47 |
| Msa1086290 | Msa1248400 | 0.807989 | 3.859602e-50 | -8.615850e-47 |
| Msa1086290 | Msa1280020 | 0.800341 | 1.508356e-48 | -8.615850e-47 |
| Msa1086290 | Msa1284030 | 0.820100 | 8.196885e-53 | -8.615850e-47 |
| Msa1086290 | Msa1298740 | 0.826980 | 2.013589e-54 | -8.615850e-47 |
| Msa1086290 | Msa1305080 | 0.810717 | 1.003010e-50 | -8.615850e-47 |
| Msa1086290 | Msa1309910 | 0.816847 | 4.477374e-52 | -8.615850e-47 |
| Msa1086290 | Msa1323060 | 0.808475 | 3.040812e-50 | -8.615850e-47 |
| Msa1086290 | Msa1327820 | 0.833553 | 4.992590e-56 | -8.615850e-47 |
| Msa1086290 | Msa1342030 | 0.816439 | 5.526533e-52 | -8.615850e-47 |
| Msa1086290 | Msa1354850 | 0.864936 | 8.493899e-65 | -8.615850e-47 |
| Msa1086290 | Msa1354890 | 0.889153 | 3.125598e-73 | -8.615850e-47 |
| Msa1086290 | Msa1355020 | 0.855923 | 4.552450e-62 | -8.615850e-47 |
| Msa1086290 | Msa1355060 | 0.867503 | 1.304568e-65 | -8.615850e-47 |
| Msa1086290 | Msa1365210 | 0.800310 | 1.530053e-48 | -8.615850e-47 |
| Msa1086290 | Msa1367940 | 0.808237 | 3.418703e-50 | -8.615850e-47 |
| Msa1086290 | Msa1371250 | 0.810056 | 1.393429e-50 | -8.615850e-47 |
| Msa1086290 | Msa1373910 | 0.800160 | 1.641944e-48 | -8.615850e-47 |
| Msa1086290 | Msa1380540 | 0.837432 | 5.217319e-57 | -8.615850e-47 |
| Msa1086290 | Msa1380580 | 0.807571 | 4.735865e-50 | -8.615850e-47 |
| Msa1086290 | Msa1385940 | 0.817315 | 3.515106e-52 | -8.615850e-47 |
| Msa1086290 | Msa1394050 | 0.808310 | 3.297639e-50 | -8.615850e-47 |
| Msa1086290 | Msa1394090 | 0.857507 | 1.557665e-62 | -8.615850e-47 |
| Msa1086290 | Msa1394100 | 0.855805 | 4.931720e-62 | -8.615850e-47 |
| Msa1086290 | Msa1394140 | 0.852612 | 4.117775e-61 | -8.615850e-47 |
| Msa1086290 | Msa1394170 | 0.802629 | 5.124685e-49 | -8.615850e-47 |
| Msa1086290 | Msa1394240 | 0.879426 | 1.258567e-69 | -8.615850e-47 |
| Msa1086290 | Msa1394280 | 0.852335 | 4.939345e-61 | -8.615850e-47 |
| Msa1086290 | Msa1415120 | 0.822833 | 1.917081e-53 | -8.615850e-47 |
| Msa1086290 | Msa1426870 | 0.818854 | 1.576860e-52 | -8.615850e-47 |
| Msa1086290 | Msa1435470 | 0.812949 | 3.277480e-51 | -8.615850e-47 |
| Msa1086290 | Msa1439800 | 0.804324 | 2.281536e-49 | -8.615850e-47 |
| Msa1086290 | Msa1442300 | 0.806600 | 7.601928e-50 | -8.615850e-47 |
| Msa1086290 | Msa1458920 | 0.804487 | 2.110175e-49 | -8.615850e-47 |
| Msa0253410 | Msa1086290 | 0.812955 | 3.266945e-51 | -8.615850e-47 |
| Msa0257130 | Msa1086290 | 0.804250 | 2.364444e-49 | -8.615850e-47 |
| Msa0263620 | Msa1086290 | 0.810623 | 1.051506e-50 | -8.615850e-47 |
| Msa0268180 | Msa1086290 | 0.917616 | 4.273887e-86 | -8.615850e-47 |
| Msa0268220 | Msa1086290 | 0.840950 | 6.384069e-58 | -8.615850e-47 |
| Msa0268340 | Msa1086290 | 0.843035 | 1.794202e-58 | -8.615850e-47 |
| Msa0268380 | Msa1086290 | 0.865540 | 5.483950e-65 | -8.615850e-47 |
| Msa0268420 | Msa1086290 | 0.925062 | 3.049983e-90 | -8.615850e-47 |
| Msa0268460 | Msa1086290 | 0.848681 | 5.250830e-60 | -8.615850e-47 |
| Msa0268500 | Msa1086290 | 0.855213 | 7.337864e-62 | -8.615850e-47 |
| Msa0268540 | Msa1086290 | 0.909932 | 3.292601e-82 | -8.615850e-47 |
| Msa0268650 | Msa1086290 | 0.921423 | 3.644689e-88 | -8.615850e-47 |
| Msa0268680 | Msa1086290 | 0.821849 | 3.244884e-53 | -8.615850e-47 |
| Msa0268690 | Msa1086290 | 0.819065 | 1.411962e-52 | -8.615850e-47 |
| Msa0268730 | Msa1086290 | 0.880233 | 6.497082e-70 | -8.615850e-47 |
| Msa0268760 | Msa1086290 | 0.820696 | 5.985383e-53 | -8.615850e-47 |
| Msa0268850 | Msa1086290 | 0.937304 | 4.307117e-98 | -8.615850e-47 |
| Msa0268900 | Msa1086290 | 0.855425 | 6.365417e-62 | -8.615850e-47 |
| Msa0268930 | Msa1086290 | 0.877217 | 7.500000e-69 | -8.615850e-47 |
| Msa0269060 | Msa1086290 | 0.932495 | 7.821094e-95 | -8.615850e-47 |
| Msa0269100 | Msa1086290 | 0.850209 | 1.969161e-60 | -8.615850e-47 |
| Msa0301460 | Msa1086290 | 0.807749 | 4.341211e-50 | -8.615850e-47 |
| Msa0301800 | Msa1086290 | 0.810154 | 1.327271e-50 | -8.615850e-47 |
| Msa0306130 | Msa1086290 | 0.815845 | 7.502542e-52 | -8.615850e-47 |
| Msa0338900 | Msa1086290 | 0.805747 | 1.149944e-49 | -8.615850e-47 |
| Msa0344200 | Msa1086290 | 0.869596 | 2.750838e-66 | -8.615850e-47 |
| Msa0344240 | Msa1086290 | 0.810694 | 1.014931e-50 | -8.615850e-47 |
| Msa0344250 | Msa1086290 | 0.841420 | 4.803857e-58 | -8.615850e-47 |
| Msa0344290 | Msa1086290 | 0.801880 | 7.306832e-49 | -8.615850e-47 |
| Msa0487560 | Msa1086290 | 0.803282 | 3.754757e-49 | -8.615850e-47 |
| Msa0558890 | Msa1086290 | 0.810290 | 1.240775e-50 | -8.615850e-47 |
| Msa0582530 | Msa1086290 | 0.882475 | 1.010276e-70 | -8.615850e-47 |
| Msa0582570 | Msa1086290 | 0.853507 | 2.282770e-61 | -8.615850e-47 |
| Msa0582580 | Msa1086290 | 0.859929 | 2.942714e-63 | -8.615850e-47 |
| Msa0582620 | Msa1086290 | 0.891924 | 2.545220e-74 | -8.615850e-47 |
| Msa0582710 | Msa1086290 | 0.900153 | 9.741150e-78 | -8.615850e-47 |
| Msa0582740 | Msa1086290 | 0.883191 | 5.527604e-71 | -8.615850e-47 |
| Msa0582830 | Msa1086290 | 0.906516 | 1.364987e-80 | -8.615850e-47 |
| Msa0582900 | Msa1086290 | 0.886135 | 4.450396e-72 | -8.615850e-47 |
| Msa0586890 | Msa1086290 | 0.807056 | 6.089181e-50 | -8.615850e-47 |
| Msa0587060 | Msa1086290 | 0.801998 | 6.912054e-49 | -8.615850e-47 |
| Msa0591370 | Msa1086290 | 0.816784 | 4.625652e-52 | -8.615850e-47 |
| Msa0595780 | Msa1086290 | 0.809269 | 2.056965e-50 | -8.615850e-47 |
| Msa0855490 | Msa1086290 | 0.809059 | 2.281431e-50 | -8.615850e-47 |
| Msa0860270 | Msa1086290 | 0.811789 | 5.872186e-51 | -8.615850e-47 |
| Msa0867990 | Msa1086290 | 0.800447 | 1.435407e-48 | -8.615850e-47 |
| Msa0910650 | Msa1086290 | 0.805332 | 1.404832e-49 | -8.615850e-47 |
| Msa0924820 | Msa1086290 | 0.816773 | 4.651999e-52 | -8.615850e-47 |
| Msa0924860 | Msa1086290 | 0.828885 | 7.010454e-55 | -8.615850e-47 |
| Msa0924890 | Msa1086290 | 0.829420 | 5.199454e-55 | -8.615850e-47 |
| Msa0925020 | Msa1086290 | 0.834434 | 3.004913e-56 | -8.615850e-47 |
| Msa0931090 | Msa1086290 | 0.901257 | 3.217613e-78 | -8.615850e-47 |
| Msa0931150 | Msa1086290 | 0.926836 | 2.709371e-91 | -8.615850e-47 |
| Msa0931200 | Msa1086290 | 0.835655 | 1.478815e-56 | -8.615850e-47 |
| Msa0931280 | Msa1086290 | 0.905407 | 4.437282e-80 | -8.615850e-47 |
| Msa0958020 | Msa1086290 | 0.801014 | 1.099574e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086290 | MtrunA17_Chr4g0015681 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa1086290 | MtrunA17_CPg0492901 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa1086290 | MtrunA17_Chr4g0016771 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1086290 | ATCG00070.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 3.76e-26 | 92.0 |
| Msa1086290 | ATCG00080.1 | 97.222 | 36 | 1 | 0 | 62 | 97 | 1 | 36 | 2.92e-19 | 73.9 |
Find 6 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTTAATATCTTTAGCT+TGG | 0.440922 | 7_2:-87303876 | Msa1086290:CDS |
| ACTGGCATAAAATCTACAAT+TGG | 0.453871 | 7_2:+87303773 | None:intergenic |
| AATGATCCAGGACGTAATCC+TGG | 0.474800 | 7_2:-87303227 | Msa1086290:CDS |
| GGATTCCTATCTAATGATCC+AGG | 0.536202 | 7_2:-87303239 | Msa1086290:CDS |
| TCACGTCCAGGATTACGTCC+TGG | 0.548081 | 7_2:+87303221 | None:intergenic |
| TACGTCCTGGATCATTAGAT+AGG | 0.581605 | 7_2:+87303234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAATATTAAAATTTT+TGG | - | chr7_2:87303503-87303522 | Msa1086290:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | + | chr7_2:87303509-87303528 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | + | chr7_2:87303660-87303679 | None:intergenic | 10.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | + | chr7_2:87303501-87303520 | None:intergenic | 15.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | + | chr7_2:87303260-87303279 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | + | chr7_2:87303261-87303280 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | - | chr7_2:87303261-87303280 | Msa1086290:CDS | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | - | chr7_2:87303547-87303566 | Msa1086290:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | - | chr7_2:87303598-87303617 | Msa1086290:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | - | chr7_2:87303689-87303708 | Msa1086290:intron | 20.0% |
| !!! | GCGTTTTTTTTTAATTATCT+TGG | - | chr7_2:87303754-87303773 | Msa1086290:CDS | 20.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | - | chr7_2:87303353-87303372 | Msa1086290:intron | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | - | chr7_2:87303829-87303848 | Msa1086290:CDS | 25.0% |
| ! | AATTGGATTCAAAAAAGCGT+AGG | + | chr7_2:87303302-87303321 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | + | chr7_2:87303319-87303338 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | + | chr7_2:87303337-87303356 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | + | chr7_2:87303346-87303365 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | + | chr7_2:87303347-87303366 | None:intergenic | 30.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | + | chr7_2:87303579-87303598 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | + | chr7_2:87303582-87303601 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | - | chr7_2:87303580-87303599 | Msa1086290:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | + | chr7_2:87303588-87303607 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | - | chr7_2:87303732-87303751 | Msa1086290:CDS | 35.0% | |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | + | chr7_2:87303295-87303314 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | - | chr7_2:87303850-87303869 | Msa1086290:CDS | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | + | chr7_2:87303858-87303877 | None:intergenic | 40.0% | |
| !! | CAAGATCTAGGTATTGGTGG+TGG | + | chr7_2:87303576-87303595 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | - | chr7_2:87303862-87303881 | Msa1086290:CDS | 45.0% | |
| !!! | AATAAATTCTTAATTTTTTT+CGG | + | chr7_2:87303424-87303443 | None:intergenic | 5.0% |
| TCACGTCCAGGATTACGTCC+TGG | + | chr7_2:87303871-87303890 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 87303214 | 87303897 | 87303214 | ID=Msa1086290;Name=Msa1086290 |
| chr7_2 | mRNA | 87303214 | 87303897 | 87303214 | ID=Msa1086290-mRNA-1;Parent=Msa1086290;Name=Msa1086290-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|97 |
| chr7_2 | exon | 87303723 | 87303897 | 87303723 | ID=Msa1086290-mRNA-1:exon:23782;Parent=Msa1086290-mRNA-1 |
| chr7_2 | exon | 87303214 | 87303332 | 87303214 | ID=Msa1086290-mRNA-1:exon:23781;Parent=Msa1086290-mRNA-1 |
| chr7_2 | CDS | 87303723 | 87303897 | 87303723 | ID=Msa1086290-mRNA-1:cds;Parent=Msa1086290-mRNA-1 |
| chr7_2 | CDS | 87303214 | 87303332 | 87303214 | ID=Msa1086290-mRNA-1:cds;Parent=Msa1086290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
