Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344220 | XP_039685924.1 | 79.371 | 286 | 17 | 8 | 3 | 282 | 2 | 251 | 1.39e-141 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344220 | sp|Q96289|ZAT10_ARATH | 40.357 | 280 | 95 | 13 | 4 | 272 | 1 | 219 | 9.93e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344220 | G7IEV2 | 79.371 | 286 | 17 | 8 | 3 | 282 | 2 | 251 | 6.65e-142 | 408 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1344220 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652700 | Msa1344220 | 0.804793 | 1.821374e-49 | -8.615850e-47 |
| Msa0749500 | Msa1344220 | 0.806763 | 7.024536e-50 | -8.615850e-47 |
| Msa0793910 | Msa1344220 | 0.802710 | 4.930692e-49 | -8.615850e-47 |
| Msa0831430 | Msa1344220 | 0.806661 | 7.382718e-50 | -8.615850e-47 |
| Msa0238710 | Msa1344220 | 0.808915 | 2.448958e-50 | -8.615850e-47 |
| Msa1344220 | Msa1344330 | 0.809825 | 1.562805e-50 | -8.615850e-47 |
| Msa1344220 | Msa1453600 | 0.827409 | 1.589495e-54 | -8.615850e-47 |
| Msa0414720 | Msa1344220 | 0.811001 | 8.707908e-51 | -8.615850e-47 |
| Msa0455830 | Msa1344220 | 0.812237 | 4.691459e-51 | -8.615850e-47 |
| Msa0459630 | Msa1344220 | 0.818169 | 2.254875e-52 | -8.615850e-47 |
| Msa0481740 | Msa1344220 | 0.822487 | 2.307211e-53 | -8.615850e-47 |
| Msa0481770 | Msa1344220 | 0.830077 | 3.598242e-55 | -8.615850e-47 |
| Msa1080650 | Msa1344220 | 0.823607 | 1.264655e-53 | -8.615850e-47 |
| Msa1126440 | Msa1344220 | 0.822125 | 2.800814e-53 | -8.615850e-47 |
| Msa1156490 | Msa1344220 | 0.805692 | 1.180946e-49 | -8.615850e-47 |
| Msa0870120 | Msa1344220 | 0.812849 | 3.447288e-51 | -8.615850e-47 |
| Msa0935830 | Msa1344220 | 0.805976 | 1.029130e-49 | -8.615850e-47 |
| Msa0973000 | Msa1344220 | 0.810831 | 9.478672e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344220 | MtrunA17_Chr1g0207451 | 79.371 | 286 | 17 | 8 | 3 | 282 | 2 | 251 | 1.28e-145 | 408 |
| Msa1344220 | MtrunA17_Chr3g0134711 | 44.286 | 280 | 100 | 11 | 4 | 276 | 1 | 231 | 2.34e-53 | 173 |
| Msa1344220 | MtrunA17_Chr1g0152661 | 43.348 | 233 | 69 | 10 | 55 | 273 | 38 | 221 | 4.67e-44 | 149 |
| Msa1344220 | MtrunA17_Chr7g0263121 | 45.794 | 107 | 49 | 4 | 77 | 178 | 12 | 114 | 4.93e-20 | 85.1 |
| Msa1344220 | MtrunA17_Chr4g0012791 | 31.863 | 204 | 70 | 6 | 41 | 179 | 136 | 335 | 4.53e-19 | 86.7 |
| Msa1344220 | MtrunA17_Chr7g0231181 | 31.343 | 201 | 90 | 5 | 55 | 230 | 164 | 341 | 9.80e-19 | 85.1 |
| Msa1344220 | MtrunA17_Chr1g0182161 | 35.542 | 166 | 90 | 6 | 65 | 228 | 1 | 151 | 1.55e-17 | 78.2 |
| Msa1344220 | MtrunA17_Chr4g0012691 | 33.094 | 139 | 81 | 4 | 98 | 228 | 212 | 346 | 4.66e-17 | 80.5 |
| Msa1344220 | MtrunA17_Chr7g0263131 | 48.101 | 79 | 39 | 2 | 106 | 184 | 34 | 110 | 7.86e-16 | 73.6 |
| Msa1344220 | MtrunA17_Chr7g0222831 | 43.333 | 90 | 43 | 2 | 108 | 195 | 42 | 125 | 1.47e-15 | 73.2 |
| Msa1344220 | MtrunA17_Chr5g0448611 | 39.091 | 110 | 28 | 3 | 108 | 182 | 132 | 237 | 8.12e-15 | 72.8 |
| Msa1344220 | MtrunA17_Chr1g0212561 | 44.086 | 93 | 47 | 2 | 108 | 199 | 47 | 135 | 1.11e-14 | 71.2 |
| Msa1344220 | MtrunA17_Chr1g0180311 | 30.846 | 201 | 91 | 6 | 60 | 227 | 81 | 266 | 3.61e-14 | 71.2 |
| Msa1344220 | MtrunA17_Chr5g0425411 | 43.182 | 88 | 35 | 2 | 108 | 180 | 121 | 208 | 8.40e-14 | 69.3 |
| Msa1344220 | MtrunA17_Chr1g0197281 | 28.704 | 216 | 99 | 8 | 56 | 227 | 97 | 301 | 1.68e-13 | 69.7 |
| Msa1344220 | MtrunA17_Chr4g0056091 | 31.111 | 180 | 86 | 5 | 57 | 230 | 158 | 305 | 2.24e-13 | 69.3 |
| Msa1344220 | MtrunA17_Chr1g0182181 | 43.750 | 80 | 39 | 3 | 100 | 178 | 31 | 105 | 3.56e-13 | 66.2 |
| Msa1344220 | MtrunA17_Chr4g0027991 | 27.439 | 164 | 73 | 3 | 61 | 178 | 67 | 230 | 1.93e-12 | 66.2 |
| Msa1344220 | MtrunA17_Chr2g0320311 | 31.163 | 215 | 98 | 6 | 56 | 227 | 71 | 278 | 4.42e-12 | 65.1 |
| Msa1344220 | MtrunA17_Chr2g0327901 | 43.056 | 72 | 30 | 1 | 107 | 178 | 35 | 95 | 6.83e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344220 | AT1G27730.1 | 40.357 | 280 | 95 | 13 | 4 | 272 | 1 | 219 | 1.01e-45 | 154 |
| Msa1344220 | AT3G19580.1 | 41.597 | 238 | 90 | 10 | 55 | 282 | 66 | 264 | 1.50e-41 | 144 |
| Msa1344220 | AT3G19580.2 | 41.597 | 238 | 90 | 10 | 55 | 282 | 66 | 264 | 1.50e-41 | 144 |
| Msa1344220 | AT5G67450.1 | 37.549 | 253 | 112 | 9 | 4 | 226 | 1 | 237 | 3.28e-38 | 135 |
| Msa1344220 | AT5G04340.1 | 38.934 | 244 | 96 | 9 | 41 | 272 | 30 | 232 | 5.07e-38 | 134 |
| Msa1344220 | AT3G49930.1 | 48.344 | 151 | 58 | 4 | 37 | 179 | 34 | 172 | 1.37e-37 | 132 |
| Msa1344220 | AT5G43170.1 | 35.165 | 273 | 92 | 13 | 4 | 272 | 1 | 192 | 3.21e-29 | 110 |
| Msa1344220 | AT3G60580.1 | 34.722 | 216 | 107 | 4 | 37 | 237 | 91 | 287 | 2.12e-24 | 99.8 |
| Msa1344220 | AT2G45120.1 | 36.571 | 175 | 90 | 4 | 55 | 227 | 146 | 301 | 2.15e-24 | 100 |
| Msa1344220 | AT1G49900.1 | 41.176 | 136 | 69 | 4 | 107 | 233 | 194 | 327 | 9.24e-23 | 98.6 |
| Msa1344220 | AT1G49900.1 | 40.000 | 140 | 73 | 4 | 101 | 234 | 745 | 879 | 1.40e-22 | 97.8 |
| Msa1344220 | AT5G03510.1 | 33.824 | 204 | 95 | 7 | 56 | 230 | 69 | 261 | 5.81e-19 | 85.1 |
| Msa1344220 | AT1G02030.1 | 39.837 | 123 | 49 | 3 | 108 | 230 | 162 | 259 | 1.04e-18 | 84.0 |
| Msa1344220 | AT2G28200.1 | 31.220 | 205 | 92 | 5 | 56 | 227 | 73 | 261 | 8.17e-18 | 81.6 |
| Msa1344220 | AT5G56200.1 | 47.312 | 93 | 30 | 3 | 106 | 179 | 342 | 434 | 5.14e-17 | 81.3 |
| Msa1344220 | AT1G02040.1 | 28.365 | 208 | 99 | 5 | 9 | 179 | 54 | 248 | 2.68e-16 | 78.2 |
| Msa1344220 | AT5G04390.1 | 32.934 | 167 | 67 | 5 | 56 | 183 | 96 | 256 | 2.95e-16 | 78.2 |
| Msa1344220 | AT2G17180.1 | 34.043 | 141 | 56 | 5 | 54 | 180 | 118 | 235 | 2.32e-15 | 74.7 |
| Msa1344220 | AT2G37430.1 | 37.815 | 119 | 55 | 3 | 60 | 178 | 17 | 116 | 3.21e-15 | 72.4 |
| Msa1344220 | AT3G53600.1 | 37.500 | 112 | 60 | 2 | 76 | 183 | 15 | 120 | 1.08e-14 | 70.9 |
| Msa1344220 | AT2G28710.1 | 50.704 | 71 | 29 | 1 | 108 | 178 | 36 | 100 | 3.04e-14 | 69.3 |
| Msa1344220 | AT4G35280.1 | 45.238 | 84 | 34 | 3 | 108 | 180 | 164 | 246 | 9.48e-13 | 67.4 |
| Msa1344220 | AT3G46070.1 | 44.444 | 72 | 40 | 0 | 107 | 178 | 37 | 108 | 1.54e-12 | 64.7 |
| Msa1344220 | AT5G59820.1 | 46.479 | 71 | 31 | 1 | 108 | 178 | 41 | 104 | 1.60e-12 | 64.7 |
| Msa1344220 | AT3G10470.1 | 34.314 | 102 | 38 | 2 | 106 | 178 | 182 | 283 | 1.98e-12 | 67.4 |
| Msa1344220 | AT3G46080.1 | 45.833 | 72 | 37 | 1 | 107 | 178 | 38 | 107 | 2.31e-12 | 64.3 |
| Msa1344220 | AT3G46090.1 | 47.945 | 73 | 32 | 2 | 107 | 178 | 41 | 108 | 1.04e-11 | 62.4 |
| Msa1344220 | AT5G61470.1 | 40.000 | 75 | 39 | 2 | 106 | 179 | 228 | 297 | 2.26e-11 | 63.5 |
Find 70 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTAATCTTGGTCTTCT+TGG | 0.185197 | tig0006804:-26502 | Msa1344220:intergenic |
| TACCTCTTGTTCATTGATTC+CGG | 0.301905 | tig0006804:-26532 | Msa1344220:intergenic |
| AATTCATGAACGTGACTCTT+TGG | 0.305289 | tig0006804:+25873 | Msa1344220:CDS |
| GGCGAGATTAACATTAATCT+TGG | 0.353029 | tig0006804:-26511 | Msa1344220:intergenic |
| TTCTGGTCTCCGGTTGGATT+CGG | 0.364389 | tig0006804:+26468 | Msa1344220:CDS |
| CAGCGCCTCTCACTGAATTC+TGG | 0.379619 | tig0006804:+26451 | Msa1344220:CDS |
| GGAACACTCGTGCATCTTAC+CGG | 0.381325 | tig0006804:-26232 | Msa1344220:intergenic |
| CGATCAAAACGACCGCGTAT+TGG | 0.397483 | tig0006804:+25907 | Msa1344220:CDS |
| AGAGGTAGAAAGTCCGTTGC+CGG | 0.419568 | tig0006804:+26548 | Msa1344220:CDS |
| TGATGAAGATTTACGGTGGC+TGG | 0.425019 | tig0006804:-26154 | Msa1344220:intergenic |
| GACTGTCTCGTTGACGGCGG+TGG | 0.426617 | tig0006804:-26187 | Msa1344220:intergenic |
| TCTCGTTGACGGCGGTGGAT+TGG | 0.428167 | tig0006804:-26182 | Msa1344220:intergenic |
| CCACCAAGTGCTTGATAAGA+TGG | 0.436761 | tig0006804:-26123 | Msa1344220:intergenic |
| AGGAAAACTCTTGTGACAAA+TGG | 0.437929 | tig0006804:-26253 | Msa1344220:intergenic |
| GCTTTGAATTCTTCTCCAAC+AGG | 0.439849 | tig0006804:+25799 | Msa1344220:CDS |
| TTTCCTACCGGTCAAGCTCT+TGG | 0.452673 | tig0006804:+26270 | Msa1344220:CDS |
| TGATTCAGCTTCACCGGTGA+TGG | 0.483480 | tig0006804:-26072 | Msa1344220:intergenic |
| TGGTGTTTGAAGCGTGGGAA+TGG | 0.489183 | tig0006804:-25832 | Msa1344220:intergenic |
| GTGTCCACCAAGAGCTTGAC+CGG | 0.489744 | tig0006804:-26277 | Msa1344220:intergenic |
| CCATCTTATCAAGCACTTGG+TGG | 0.494016 | tig0006804:+26123 | Msa1344220:CDS |
| GTCAAATCCACGGTGGCTGA+TGG | 0.494460 | tig0006804:-26418 | Msa1344220:intergenic |
| TTCCCATCTTATCAAGCACT+TGG | 0.496098 | tig0006804:+26120 | Msa1344220:CDS |
| CCTACCGGTCAAGCTCTTGG+TGG | 0.502683 | tig0006804:+26273 | Msa1344220:CDS |
| TCTCCACCACCGAATCCAAC+CGG | 0.506094 | tig0006804:-26477 | Msa1344220:intergenic |
| TGTTACTGTTGTTATGATTG+TGG | 0.508189 | tig0006804:-26338 | Msa1344220:intergenic |
| ATCACAGTCTCCGACGGCGG+CGG | 0.508871 | tig0006804:+26384 | Msa1344220:CDS |
| GGAGGACGCGCCGCCGCCGT+CGG | 0.514572 | tig0006804:-26394 | Msa1344220:intergenic |
| ACTGAATTCTGGTCTCCGGT+TGG | 0.515567 | tig0006804:+26462 | Msa1344220:CDS |
| TCTCACTGAATTCTGGTCTC+CGG | 0.517672 | tig0006804:+26458 | Msa1344220:CDS |
| GATATTCTTCTTCAGTGGGT+GGG | 0.517674 | tig0006804:-25933 | Msa1344220:intergenic |
| CAGAATTCAGTGAGAGGCGC+TGG | 0.519958 | tig0006804:-26450 | Msa1344220:intergenic |
| AGATATTCTTCTTCAGTGGG+TGG | 0.522083 | tig0006804:-25934 | Msa1344220:intergenic |
| TGTTTCATCATTGTCTTCAC+CGG | 0.523785 | tig0006804:-26598 | Msa1344220:intergenic |
| TCTCCGGTTGGATTCGGTGG+TGG | 0.527155 | tig0006804:+26474 | Msa1344220:CDS |
| CACCGGTGATTCAGCTTCAC+CGG | 0.531534 | tig0006804:-26078 | Msa1344220:intergenic |
| AAGATTAATGTTAATCTCGC+CGG | 0.533608 | tig0006804:+26513 | Msa1344220:CDS |
| AACAGAGACTGTCTCGTTGA+CGG | 0.534230 | tig0006804:-26193 | Msa1344220:intergenic |
| GTTGCAGTCGCCGCCATCAC+CGG | 0.540954 | tig0006804:+26059 | Msa1344220:CDS |
| TCCACGGTGGCTGATGGAGG+AGG | 0.543367 | tig0006804:-26412 | Msa1344220:intergenic |
| GTTGTTGGTGTTTGAAGCGT+GGG | 0.544969 | tig0006804:-25837 | Msa1344220:intergenic |
| CACCGGTGAAGCTGAATCAC+CGG | 0.548157 | tig0006804:+26076 | Msa1344220:CDS |
| AGCGAGATATTCTTCTTCAG+TGG | 0.552258 | tig0006804:-25938 | Msa1344220:intergenic |
| GCGAGATATTCTTCTTCAGT+GGG | 0.560158 | tig0006804:-25937 | Msa1344220:intergenic |
| TGGTCTCCGGTTGGATTCGG+TGG | 0.560623 | tig0006804:+26471 | Msa1344220:CDS |
| GGTGATGGCGGCGACTGCAA+CGG | 0.560799 | tig0006804:-26057 | Msa1344220:intergenic |
| CACAAACGATGTCACTATGA+AGG | 0.562849 | tig0006804:+26297 | Msa1344220:CDS |
| TGAGAGGCGCTGGTAAATTG+AGG | 0.568160 | tig0006804:-26440 | Msa1344220:intergenic |
| GTTTCCGTGTCAACGGTCAC+CGG | 0.569344 | tig0006804:+26213 | Msa1344220:CDS |
| CACCAAGTGCTTGATAAGAT+GGG | 0.573814 | tig0006804:-26122 | Msa1344220:intergenic |
| AGTCTCTGTTTCCGTGTCAA+CGG | 0.584449 | tig0006804:+26206 | Msa1344220:CDS |
| TTCAGCTTCACCGGTGATGG+CGG | 0.589012 | tig0006804:-26069 | Msa1344220:intergenic |
| CTTTGTTACAAACACTGCAC+CGG | 0.591435 | tig0006804:-26095 | Msa1344220:intergenic |
| CGCCGGAATCAATGAACAAG+AGG | 0.596526 | tig0006804:+26530 | Msa1344220:CDS |
| AAATCCACGGTGGCTGATGG+AGG | 0.597416 | tig0006804:-26415 | Msa1344220:intergenic |
| AATGGAATAGTAGCTCCTGT+TGG | 0.598789 | tig0006804:-25814 | Msa1344220:intergenic |
| CAAAGCTTGTAACTCTAAAG+CGG | 0.606121 | tig0006804:-25782 | Msa1344220:intergenic |
| CCACCAAGAGCTTGACCGGT+AGG | 0.606411 | tig0006804:-26273 | Msa1344220:intergenic |
| CTTACCGGTGACCGTTGACA+CGG | 0.608002 | tig0006804:-26217 | Msa1344220:intergenic |
| TGTTGTTGGTGTTTGAAGCG+TGG | 0.617744 | tig0006804:-25838 | Msa1344220:intergenic |
| GGAATCACAGTCTCCGACGG+CGG | 0.622544 | tig0006804:+26381 | Msa1344220:CDS |
| AGTGGAATCACAGTCTCCGA+CGG | 0.627679 | tig0006804:+26378 | Msa1344220:CDS |
| AGCAACGTCAATAACAGCAG+TGG | 0.636514 | tig0006804:+26360 | Msa1344220:CDS |
| TCCTCCTCCATCAGCCACCG+TGG | 0.642688 | tig0006804:+26411 | Msa1344220:CDS |
| GTAAATTGAGGTCAAATCCA+CGG | 0.651066 | tig0006804:-26428 | None:intergenic |
| GGAGACCAGAATTCAGTGAG+AGG | 0.681730 | tig0006804:-26456 | None:intergenic |
| TTTCTGATGAAGATTTACGG+TGG | 0.727105 | tig0006804:-26158 | None:intergenic |
| AGAGACTGTCTCGTTGACGG+CGG | 0.729919 | tig0006804:-26190 | None:intergenic |
| GTGGGTGGGTTACCAATACG+CGG | 0.746672 | tig0006804:-25919 | None:intergenic |
| TCTTCACCGGAAAACAAACG+CGG | 0.774869 | tig0006804:-26585 | None:intergenic |
| AATTGAGGTCAAATCCACGG+TGG | 0.794635 | tig0006804:-26425 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTGATTTTCTTGTTGT+TGG | - | tig0006804:25855-25874 | Msa1344220:intergenic | 25.0% |
| !!! | TTTCTTGATTTTCTTGTTGT+TGG | - | tig0006804:25855-25874 | Msa1344220:intergenic | 25.0% |
| ! | GGTTTTCTGATGAAGATTTA+CGG | - | tig0006804:26164-26183 | Msa1344220:intergenic | 30.0% |
| TGTTACTGTTGTTATGATTG+TGG | - | tig0006804:26341-26360 | Msa1344220:intergenic | 30.0% | |
| ! | AACATTAATCTTGGTCTTCT+TGG | - | tig0006804:26505-26524 | Msa1344220:intergenic | 30.0% |
| AAGATTAATGTTAATCTCGC+CGG | + | tig0006804:26513-26532 | Msa1344220:CDS | 30.0% | |
| ! | GGTTTTCTGATGAAGATTTA+CGG | - | tig0006804:26164-26183 | Msa1344220:intergenic | 30.0% |
| TGTTACTGTTGTTATGATTG+TGG | - | tig0006804:26341-26360 | Msa1344220:intergenic | 30.0% | |
| ! | AACATTAATCTTGGTCTTCT+TGG | - | tig0006804:26505-26524 | Msa1344220:intergenic | 30.0% |
| AAGATTAATGTTAATCTCGC+CGG | + | tig0006804:26513-26532 | Msa1344220:CDS | 30.0% | |
| ! | CAAAGCTTGTAACTCTAAAG+CGG | - | tig0006804:25785-25804 | Msa1387370:intergenic | 35.0% |
| AATTCATGAACGTGACTCTT+TGG | + | tig0006804:25873-25892 | Msa1344220:CDS | 35.0% | |
| TTTCTGATGAAGATTTACGG+TGG | - | tig0006804:26161-26180 | Msa1344220:intergenic | 35.0% | |
| AGGAAAACTCTTGTGACAAA+TGG | - | tig0006804:26256-26275 | Msa1344220:intergenic | 35.0% | |
| GTAAATTGAGGTCAAATCCA+CGG | - | tig0006804:26431-26450 | Msa1344220:intergenic | 35.0% | |
| GGCGAGATTAACATTAATCT+TGG | - | tig0006804:26514-26533 | Msa1344220:intergenic | 35.0% | |
| !! | TACCTCTTGTTCATTGATTC+CGG | - | tig0006804:26535-26554 | Msa1344220:intergenic | 35.0% |
| TGTTTCATCATTGTCTTCAC+CGG | - | tig0006804:26601-26620 | Msa1344220:intergenic | 35.0% | |
| ! | CAAAGCTTGTAACTCTAAAG+CGG | - | tig0006804:25785-25804 | Msa1344220:intergenic | 35.0% |
| AATTCATGAACGTGACTCTT+TGG | + | tig0006804:25873-25892 | Msa1344220:CDS | 35.0% | |
| TTTCTGATGAAGATTTACGG+TGG | - | tig0006804:26161-26180 | Msa1344220:intergenic | 35.0% | |
| AGGAAAACTCTTGTGACAAA+TGG | - | tig0006804:26256-26275 | Msa1344220:intergenic | 35.0% | |
| GTAAATTGAGGTCAAATCCA+CGG | - | tig0006804:26431-26450 | Msa1344220:intergenic | 35.0% | |
| GGCGAGATTAACATTAATCT+TGG | - | tig0006804:26514-26533 | Msa1344220:intergenic | 35.0% | |
| !! | TACCTCTTGTTCATTGATTC+CGG | - | tig0006804:26535-26554 | Msa1344220:intergenic | 35.0% |
| TGTTTCATCATTGTCTTCAC+CGG | - | tig0006804:26601-26620 | Msa1344220:intergenic | 35.0% | |
| ! | GCTTTGAATTCTTCTCCAAC+AGG | + | tig0006804:25799-25818 | Msa1344220:CDS | 40.0% |
| AATGGAATAGTAGCTCCTGT+TGG | - | tig0006804:25817-25836 | Msa1344220:intergenic | 40.0% | |
| GATATTCTTCTTCAGTGGGT+GGG | - | tig0006804:25936-25955 | Msa1344220:intergenic | 40.0% | |
| AGATATTCTTCTTCAGTGGG+TGG | - | tig0006804:25937-25956 | Msa1344220:intergenic | 40.0% | |
| GCGAGATATTCTTCTTCAGT+GGG | - | tig0006804:25940-25959 | Msa1344220:intergenic | 40.0% | |
| AGCGAGATATTCTTCTTCAG+TGG | - | tig0006804:25941-25960 | Msa1344220:intergenic | 40.0% | |
| CTTTGTTACAAACACTGCAC+CGG | - | tig0006804:26098-26117 | Msa1344220:intergenic | 40.0% | |
| TTCCCATCTTATCAAGCACT+TGG | + | tig0006804:26120-26139 | Msa1344220:CDS | 40.0% | |
| CACCAAGTGCTTGATAAGAT+GGG | - | tig0006804:26125-26144 | Msa1344220:intergenic | 40.0% | |
| ! | TGTCACAAGAGTTTTCCTAC+CGG | + | tig0006804:26258-26277 | Msa1344220:CDS | 40.0% |
| CACAAACGATGTCACTATGA+AGG | + | tig0006804:26297-26316 | Msa1344220:CDS | 40.0% | |
| ! | GCTTTGAATTCTTCTCCAAC+AGG | + | tig0006804:25799-25818 | Msa1344220:CDS | 40.0% |
| AATGGAATAGTAGCTCCTGT+TGG | - | tig0006804:25817-25836 | Msa1344220:intergenic | 40.0% | |
| GATATTCTTCTTCAGTGGGT+GGG | - | tig0006804:25936-25955 | Msa1344220:intergenic | 40.0% | |
| AGATATTCTTCTTCAGTGGG+TGG | - | tig0006804:25937-25956 | Msa1344220:intergenic | 40.0% | |
| GCGAGATATTCTTCTTCAGT+GGG | - | tig0006804:25940-25959 | Msa1344220:intergenic | 40.0% | |
| AGCGAGATATTCTTCTTCAG+TGG | - | tig0006804:25941-25960 | Msa1344220:intergenic | 40.0% | |
| CTTTGTTACAAACACTGCAC+CGG | - | tig0006804:26098-26117 | Msa1344220:intergenic | 40.0% | |
| TTCCCATCTTATCAAGCACT+TGG | + | tig0006804:26120-26139 | Msa1344220:CDS | 40.0% | |
| CACCAAGTGCTTGATAAGAT+GGG | - | tig0006804:26125-26144 | Msa1344220:intergenic | 40.0% | |
| ! | TGTCACAAGAGTTTTCCTAC+CGG | + | tig0006804:26258-26277 | Msa1344220:CDS | 40.0% |
| CACAAACGATGTCACTATGA+AGG | + | tig0006804:26297-26316 | Msa1344220:CDS | 40.0% | |
| ! | GTTGTTGGTGTTTGAAGCGT+GGG | - | tig0006804:25840-25859 | Msa1344220:intergenic | 45.0% |
| ! | TGTTGTTGGTGTTTGAAGCG+TGG | - | tig0006804:25841-25860 | Msa1344220:intergenic | 45.0% |
| CCACCAAGTGCTTGATAAGA+TGG | - | tig0006804:26126-26145 | Msa1344220:intergenic | 45.0% | |
| CCATCTTATCAAGCACTTGG+TGG | + | tig0006804:26123-26142 | Msa1344220:CDS | 45.0% | |
| TGATGAAGATTTACGGTGGC+TGG | - | tig0006804:26157-26176 | Msa1344220:intergenic | 45.0% | |
| AACAGAGACTGTCTCGTTGA+CGG | - | tig0006804:26196-26215 | Msa1344220:intergenic | 45.0% | |
| AGTCTCTGTTTCCGTGTCAA+CGG | + | tig0006804:26206-26225 | Msa1344220:CDS | 45.0% | |
| AGCAACGTCAATAACAGCAG+TGG | + | tig0006804:26360-26379 | Msa1344220:CDS | 45.0% | |
| AATTGAGGTCAAATCCACGG+TGG | - | tig0006804:26428-26447 | Msa1344220:intergenic | 45.0% | |
| TCTCACTGAATTCTGGTCTC+CGG | + | tig0006804:26458-26477 | Msa1344220:CDS | 45.0% | |
| ! | AAACAAACGCGGCCTTTTAG+CGG | - | tig0006804:26577-26596 | Msa1344220:intergenic | 45.0% |
| !! | AAAAGGCCGCGTTTGTTTTC+CGG | + | tig0006804:26579-26598 | Msa1344220:CDS | 45.0% |
| TCTTCACCGGAAAACAAACG+CGG | - | tig0006804:26588-26607 | Msa1344220:intergenic | 45.0% | |
| ! | GTTGTTGGTGTTTGAAGCGT+GGG | - | tig0006804:25840-25859 | Msa1344220:intergenic | 45.0% |
| ! | TGTTGTTGGTGTTTGAAGCG+TGG | - | tig0006804:25841-25860 | Msa1344220:intergenic | 45.0% |
| CCACCAAGTGCTTGATAAGA+TGG | - | tig0006804:26126-26145 | Msa1344220:intergenic | 45.0% | |
| CCATCTTATCAAGCACTTGG+TGG | + | tig0006804:26123-26142 | Msa1344220:CDS | 45.0% | |
| TGATGAAGATTTACGGTGGC+TGG | - | tig0006804:26157-26176 | Msa1344220:intergenic | 45.0% | |
| AACAGAGACTGTCTCGTTGA+CGG | - | tig0006804:26196-26215 | Msa1344220:intergenic | 45.0% | |
| AGTCTCTGTTTCCGTGTCAA+CGG | + | tig0006804:26206-26225 | Msa1344220:CDS | 45.0% | |
| AGCAACGTCAATAACAGCAG+TGG | + | tig0006804:26360-26379 | Msa1344220:CDS | 45.0% | |
| AATTGAGGTCAAATCCACGG+TGG | - | tig0006804:26428-26447 | Msa1344220:intergenic | 45.0% | |
| TCTCACTGAATTCTGGTCTC+CGG | + | tig0006804:26458-26477 | Msa1344220:CDS | 45.0% | |
| ! | AAACAAACGCGGCCTTTTAG+CGG | - | tig0006804:26577-26596 | Msa1344220:intergenic | 45.0% |
| !! | AAAAGGCCGCGTTTGTTTTC+CGG | + | tig0006804:26579-26598 | Msa1344220:CDS | 45.0% |
| TCTTCACCGGAAAACAAACG+CGG | - | tig0006804:26588-26607 | Msa1344220:intergenic | 45.0% | |
| ! | TGGTGTTTGAAGCGTGGGAA+TGG | - | tig0006804:25835-25854 | Msa1344220:intergenic | 50.0% |
| CGATCAAAACGACCGCGTAT+TGG | + | tig0006804:25907-25926 | Msa1344220:CDS | 50.0% | |
| TGATTCAGCTTCACCGGTGA+TGG | - | tig0006804:26075-26094 | Msa1344220:intergenic | 50.0% | |
| GGAACACTCGTGCATCTTAC+CGG | - | tig0006804:26235-26254 | Msa1344220:intergenic | 50.0% | |
| TTTCCTACCGGTCAAGCTCT+TGG | + | tig0006804:26270-26289 | Msa1344220:CDS | 50.0% | |
| AGTGGAATCACAGTCTCCGA+CGG | + | tig0006804:26378-26397 | Msa1344220:CDS | 50.0% | |
| !! | TGAGAGGCGCTGGTAAATTG+AGG | - | tig0006804:26443-26462 | Msa1344220:intergenic | 50.0% |
| GGAGACCAGAATTCAGTGAG+AGG | - | tig0006804:26459-26478 | Msa1344220:intergenic | 50.0% | |
| ACTGAATTCTGGTCTCCGGT+TGG | + | tig0006804:26462-26481 | Msa1344220:CDS | 50.0% | |
| TTCTGGTCTCCGGTTGGATT+CGG | + | tig0006804:26468-26487 | Msa1344220:CDS | 50.0% | |
| CGCCGGAATCAATGAACAAG+AGG | + | tig0006804:26530-26549 | Msa1344220:CDS | 50.0% | |
| AGAGGTAGAAAGTCCGTTGC+CGG | + | tig0006804:26548-26567 | Msa1344220:CDS | 50.0% | |
| ! | CTTTTAGCGGTTACCGGCAA+CGG | - | tig0006804:26564-26583 | Msa1344220:intergenic | 50.0% |
| ! | TGGTGTTTGAAGCGTGGGAA+TGG | - | tig0006804:25835-25854 | Msa1344220:intergenic | 50.0% |
| CGATCAAAACGACCGCGTAT+TGG | + | tig0006804:25907-25926 | Msa1344220:CDS | 50.0% | |
| TGATTCAGCTTCACCGGTGA+TGG | - | tig0006804:26075-26094 | Msa1344220:intergenic | 50.0% | |
| GGAACACTCGTGCATCTTAC+CGG | - | tig0006804:26235-26254 | Msa1344220:intergenic | 50.0% | |
| TTTCCTACCGGTCAAGCTCT+TGG | + | tig0006804:26270-26289 | Msa1344220:CDS | 50.0% | |
| AGTGGAATCACAGTCTCCGA+CGG | + | tig0006804:26378-26397 | Msa1344220:CDS | 50.0% | |
| !! | TGAGAGGCGCTGGTAAATTG+AGG | - | tig0006804:26443-26462 | Msa1344220:intergenic | 50.0% |
| GGAGACCAGAATTCAGTGAG+AGG | - | tig0006804:26459-26478 | Msa1344220:intergenic | 50.0% | |
| ACTGAATTCTGGTCTCCGGT+TGG | + | tig0006804:26462-26481 | Msa1344220:CDS | 50.0% | |
| TTCTGGTCTCCGGTTGGATT+CGG | + | tig0006804:26468-26487 | Msa1344220:CDS | 50.0% | |
| CGCCGGAATCAATGAACAAG+AGG | + | tig0006804:26530-26549 | Msa1344220:CDS | 50.0% | |
| AGAGGTAGAAAGTCCGTTGC+CGG | + | tig0006804:26548-26567 | Msa1344220:CDS | 50.0% | |
| ! | CTTTTAGCGGTTACCGGCAA+CGG | - | tig0006804:26564-26583 | Msa1344220:intergenic | 50.0% |
| !! | GTGGGTGGGTTACCAATACG+CGG | - | tig0006804:25922-25941 | Msa1344220:intergenic | 55.0% |
| ! | TTCAGCTTCACCGGTGATGG+CGG | - | tig0006804:26072-26091 | Msa1344220:intergenic | 55.0% |
| CACCGGTGAAGCTGAATCAC+CGG | + | tig0006804:26076-26095 | Msa1344220:CDS | 55.0% | |
| CACCGGTGATTCAGCTTCAC+CGG | - | tig0006804:26081-26100 | Msa1344220:intergenic | 55.0% | |
| AGAGACTGTCTCGTTGACGG+CGG | - | tig0006804:26193-26212 | Msa1344220:intergenic | 55.0% | |
| GTTTCCGTGTCAACGGTCAC+CGG | + | tig0006804:26213-26232 | Msa1344220:CDS | 55.0% | |
| CTTACCGGTGACCGTTGACA+CGG | - | tig0006804:26220-26239 | Msa1344220:intergenic | 55.0% | |
| GTGTCCACCAAGAGCTTGAC+CGG | - | tig0006804:26280-26299 | Msa1344220:intergenic | 55.0% | |
| AAATCCACGGTGGCTGATGG+AGG | - | tig0006804:26418-26437 | Msa1344220:intergenic | 55.0% | |
| GTCAAATCCACGGTGGCTGA+TGG | - | tig0006804:26421-26440 | Msa1344220:intergenic | 55.0% | |
| ! | CAGAATTCAGTGAGAGGCGC+TGG | - | tig0006804:26453-26472 | Msa1344220:intergenic | 55.0% |
| CAGCGCCTCTCACTGAATTC+TGG | + | tig0006804:26451-26470 | Msa1344220:CDS | 55.0% | |
| TCTCCACCACCGAATCCAAC+CGG | - | tig0006804:26480-26499 | Msa1344220:intergenic | 55.0% | |
| CGTTGCCGGTAACCGCTAAA+AGG | + | tig0006804:26562-26581 | Msa1344220:CDS | 55.0% | |
| !! | GTGGGTGGGTTACCAATACG+CGG | - | tig0006804:25922-25941 | Msa1344220:intergenic | 55.0% |
| ! | TTCAGCTTCACCGGTGATGG+CGG | - | tig0006804:26072-26091 | Msa1344220:intergenic | 55.0% |
| CACCGGTGAAGCTGAATCAC+CGG | + | tig0006804:26076-26095 | Msa1344220:CDS | 55.0% | |
| CACCGGTGATTCAGCTTCAC+CGG | - | tig0006804:26081-26100 | Msa1344220:intergenic | 55.0% | |
| AGAGACTGTCTCGTTGACGG+CGG | - | tig0006804:26193-26212 | Msa1344220:intergenic | 55.0% | |
| GTTTCCGTGTCAACGGTCAC+CGG | + | tig0006804:26213-26232 | Msa1344220:CDS | 55.0% | |
| CTTACCGGTGACCGTTGACA+CGG | - | tig0006804:26220-26239 | Msa1344220:intergenic | 55.0% | |
| GTGTCCACCAAGAGCTTGAC+CGG | - | tig0006804:26280-26299 | Msa1344220:intergenic | 55.0% | |
| AAATCCACGGTGGCTGATGG+AGG | - | tig0006804:26418-26437 | Msa1344220:intergenic | 55.0% | |
| GTCAAATCCACGGTGGCTGA+TGG | - | tig0006804:26421-26440 | Msa1344220:intergenic | 55.0% | |
| ! | CAGAATTCAGTGAGAGGCGC+TGG | - | tig0006804:26453-26472 | Msa1344220:intergenic | 55.0% |
| CAGCGCCTCTCACTGAATTC+TGG | + | tig0006804:26451-26470 | Msa1344220:CDS | 55.0% | |
| TCTCCACCACCGAATCCAAC+CGG | - | tig0006804:26480-26499 | Msa1344220:intergenic | 55.0% | |
| CGTTGCCGGTAACCGCTAAA+AGG | + | tig0006804:26562-26581 | Msa1344220:CDS | 55.0% | |
| TCTCGTTGACGGCGGTGGAT+TGG | - | tig0006804:26185-26204 | Msa1344220:intergenic | 60.0% | |
| CCACCAAGAGCTTGACCGGT+AGG | - | tig0006804:26276-26295 | Msa1344220:intergenic | 60.0% | |
| CCTACCGGTCAAGCTCTTGG+TGG | + | tig0006804:26273-26292 | Msa1344220:CDS | 60.0% | |
| GGAATCACAGTCTCCGACGG+CGG | + | tig0006804:26381-26400 | Msa1344220:CDS | 60.0% | |
| TGGTCTCCGGTTGGATTCGG+TGG | + | tig0006804:26471-26490 | Msa1344220:CDS | 60.0% | |
| !! | TCTCCGGTTGGATTCGGTGG+TGG | + | tig0006804:26474-26493 | Msa1344220:CDS | 60.0% |
| ! | CGCGGCCTTTTAGCGGTTAC+CGG | - | tig0006804:26570-26589 | Msa1344220:intergenic | 60.0% |
| TCTCGTTGACGGCGGTGGAT+TGG | - | tig0006804:26185-26204 | Msa1344220:intergenic | 60.0% | |
| CCACCAAGAGCTTGACCGGT+AGG | - | tig0006804:26276-26295 | Msa1344220:intergenic | 60.0% | |
| CCTACCGGTCAAGCTCTTGG+TGG | + | tig0006804:26273-26292 | Msa1344220:CDS | 60.0% | |
| GGAATCACAGTCTCCGACGG+CGG | + | tig0006804:26381-26400 | Msa1344220:CDS | 60.0% | |
| TGGTCTCCGGTTGGATTCGG+TGG | + | tig0006804:26471-26490 | Msa1344220:CDS | 60.0% | |
| !! | TCTCCGGTTGGATTCGGTGG+TGG | + | tig0006804:26474-26493 | Msa1344220:CDS | 60.0% |
| ! | CGCGGCCTTTTAGCGGTTAC+CGG | - | tig0006804:26570-26589 | Msa1344220:intergenic | 60.0% |
| !! | GGTGATGGCGGCGACTGCAA+CGG | - | tig0006804:26060-26079 | Msa1344220:intergenic | 65.0% |
| GTTGCAGTCGCCGCCATCAC+CGG | + | tig0006804:26059-26078 | Msa1344220:CDS | 65.0% | |
| GACTGTCTCGTTGACGGCGG+TGG | - | tig0006804:26190-26209 | Msa1344220:intergenic | 65.0% | |
| ATCACAGTCTCCGACGGCGG+CGG | + | tig0006804:26384-26403 | Msa1344220:CDS | 65.0% | |
| TCCTCCTCCATCAGCCACCG+TGG | + | tig0006804:26411-26430 | Msa1344220:CDS | 65.0% | |
| TCCACGGTGGCTGATGGAGG+AGG | - | tig0006804:26415-26434 | Msa1344220:intergenic | 65.0% | |
| !! | GGTGATGGCGGCGACTGCAA+CGG | - | tig0006804:26060-26079 | Msa1344220:intergenic | 65.0% |
| GTTGCAGTCGCCGCCATCAC+CGG | + | tig0006804:26059-26078 | Msa1344220:CDS | 65.0% | |
| GACTGTCTCGTTGACGGCGG+TGG | - | tig0006804:26190-26209 | Msa1344220:intergenic | 65.0% | |
| ATCACAGTCTCCGACGGCGG+CGG | + | tig0006804:26384-26403 | Msa1344220:CDS | 65.0% | |
| TCCTCCTCCATCAGCCACCG+TGG | + | tig0006804:26411-26430 | Msa1344220:CDS | 65.0% | |
| TCCACGGTGGCTGATGGAGG+AGG | - | tig0006804:26415-26434 | Msa1344220:intergenic | 65.0% | |
| ! | GGAGGACGCGCCGCCGCCGT+CGG | - | tig0006804:26397-26416 | Msa1344220:intergenic | 85.0% |
| ! | GGAGGACGCGCCGCCGCCGT+CGG | - | tig0006804:26397-26416 | Msa1344220:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006804 | gene | 25778 | 26626 | 25778 | ID=Msa1344220;Name=Msa1344220 |
| tig0006804 | mRNA | 25778 | 26626 | 25778 | ID=Msa1344220-mRNA-1;Parent=Msa1344220;Name=Msa1344220-mRNA-1;_AED=0.01;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|282 |
| tig0006804 | exon | 25778 | 26626 | 25778 | ID=Msa1344220-mRNA-1:exon:4429;Parent=Msa1344220-mRNA-1 |
| tig0006804 | CDS | 25778 | 26626 | 25778 | ID=Msa1344220-mRNA-1:cds;Parent=Msa1344220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
