AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0238710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238710 MtrunA17_Chr2g0288871 96.270 563 11 3 1 563 1 553 0.0 1109
Msa0238710 MtrunA17_Chr4g0075201 54.227 485 151 20 59 524 33 465 4.84e-138 409
Msa0238710 MtrunA17_Chr2g0322391 46.995 549 196 19 62 556 81 588 1.23e-125 381
Msa0238710 MtrunA17_Chr3g0099641 43.685 483 195 14 60 535 32 444 1.44e-109 335
Msa0238710 MtrunA17_Chr4g0025061 36.216 555 228 18 67 542 60 567 3.47e-86 279
Msa0238710 MtrunA17_Chr7g0270831 41.309 489 170 16 67 545 30 411 5.78e-86 273
Msa0238710 MtrunA17_Chr4g0024391 38.105 475 189 16 144 542 1 446 1.34e-74 245
Msa0238710 MtrunA17_Chr4g0025051 36.126 573 234 20 67 550 35 564 3.24e-74 247
Msa0238710 MtrunA17_Chr7g0216891 32.755 461 222 13 150 541 47 488 1.35e-55 197
Msa0238710 MtrunA17_Chr2g0302391 33.967 421 183 14 143 541 68 415 1.74e-55 193
Msa0238710 MtrunA17_Chr4g0060271 36.667 480 226 16 143 555 70 538 4.95e-46 171
Msa0238710 MtrunA17_Chr4g0051181 36.808 307 159 10 76 367 17 303 1.26e-45 167
Msa0238710 MtrunA17_Chr5g0419241 90.476 63 6 0 275 337 45 107 2.49e-35 128
Msa0238710 MtrunA17_Chr1g0150281 33.191 235 110 5 150 383 28 216 1.21e-28 115
Msa0238710 MtrunA17_Chr4g0001361 38.816 152 69 4 282 433 137 264 3.34e-27 112
Msa0238710 MtrunA17_Chr3g0101131 30.877 285 142 10 112 369 220 476 3.53e-25 109
Msa0238710 MtrunA17_Chr7g0218081 35.294 170 104 3 217 382 317 484 1.96e-24 107
Msa0238710 MtrunA17_Chr1g0150271 45.918 98 51 1 302 397 96 193 2.09e-24 102
Msa0238710 MtrunA17_Chr5g0445311 55.000 80 35 1 290 369 347 425 2.10e-24 107
Msa0238710 MtrunA17_Chr3g0136961 50.588 85 42 0 292 376 123 207 2.67e-24 103
Msa0238710 MtrunA17_Chr3g0079691 50.000 90 44 1 280 369 468 556 1.29e-23 105
Msa0238710 MtrunA17_Chr3g0079691 44.086 93 50 2 276 368 249 339 1.10e-16 83.6
Msa0238710 MtrunA17_Chr7g0270191 48.421 95 44 2 291 385 129 218 1.42e-23 101
Msa0238710 MtrunA17_Chr3g0106491 53.165 79 36 1 289 367 347 424 1.90e-23 103
Msa0238710 MtrunA17_Chr3g0106491 30.872 149 70 4 221 369 143 258 2.31e-11 66.2
Msa0238710 MtrunA17_Chr4g0004911 53.165 79 36 1 289 367 318 395 2.47e-23 103
Msa0238710 MtrunA17_Chr4g0004911 42.667 75 40 2 293 367 172 243 2.33e-14 75.9
Msa0238710 MtrunA17_Chr5g0432161 53.086 81 37 1 289 369 403 482 3.97e-23 103
Msa0238710 MtrunA17_Chr5g0432161 51.667 60 27 2 308 367 245 302 1.37e-13 73.6
Msa0238710 MtrunA17_Chr7g0243891 52.326 86 40 1 284 369 351 435 4.48e-23 103
Msa0238710 MtrunA17_Chr5g0418191 45.918 98 52 1 289 386 302 398 1.77e-22 100
Msa0238710 MtrunA17_Chr5g0418191 39.583 96 56 2 308 403 152 245 3.67e-13 71.6
Msa0238710 MtrunA17_Chr5g0447701 45.631 103 49 3 282 379 222 322 3.00e-22 99.0
Msa0238710 MtrunA17_Chr5g0447701 41.250 80 45 2 305 384 90 167 2.27e-11 65.9
Msa0238710 MtrunA17_Chr2g0333851 51.190 84 36 2 289 367 146 229 3.03e-22 97.8
Msa0238710 MtrunA17_Chr4g0042831 47.368 95 46 2 289 380 260 353 3.69e-22 98.6
Msa0238710 MtrunA17_Chr4g0051881 45.055 91 49 1 294 384 165 254 4.26e-22 97.8
Msa0238710 MtrunA17_Chr7g0249311 52.500 80 37 1 290 369 375 453 4.92e-22 100
Msa0238710 MtrunA17_Chr7g0249311 50.000 60 28 2 308 367 180 237 1.44e-11 67.4
Msa0238710 MtrunA17_Chr1g0150801 42.424 99 55 2 267 365 63 159 5.64e-22 92.8
Msa0238710 MtrunA17_Chr2g0294231 44.348 115 53 4 291 401 187 294 5.98e-22 98.2
Msa0238710 MtrunA17_Chr7g0249301 52.500 80 37 1 290 369 275 353 6.15e-22 97.8
Msa0238710 MtrunA17_Chr7g0249301 47.692 65 32 2 303 367 58 120 7.11e-12 67.4
Msa0238710 MtrunA17_Chr7g0224801 53.521 71 32 1 296 366 82 151 6.27e-22 93.2
Msa0238710 MtrunA17_Chr1g0194481 43.269 104 57 2 291 393 142 244 6.79e-21 94.0
Msa0238710 MtrunA17_Chr7g0263531 41.837 98 56 1 270 367 324 420 1.51e-20 94.4
Msa0238710 MtrunA17_Chr7g0263531 43.902 82 40 3 308 389 190 265 2.18e-12 69.3
Msa0238710 MtrunA17_Chr7g0270051 45.361 97 44 2 290 380 30 123 1.95e-20 91.3
Msa0238710 MtrunA17_Chr8g0383251 45.946 74 39 1 294 367 95 167 3.72e-20 88.6
Msa0238710 MtrunA17_Chr5g0418781 50.000 78 38 1 287 364 104 180 6.97e-20 90.1
Msa0238710 MtrunA17_Chr4g0068541 47.619 84 42 2 291 374 192 273 1.11e-19 91.7
Msa0238710 MtrunA17_Chr5g0443131 50.000 74 36 1 294 367 144 216 2.40e-19 89.0
Msa0238710 MtrunA17_Chr7g0248721 34.682 173 98 6 195 365 38 197 3.51e-19 86.7
Msa0238710 MtrunA17_Chr1g0147881 48.649 74 38 0 291 364 246 319 4.24e-19 89.0
Msa0238710 MtrunA17_Chr4g0074001 49.351 77 38 1 291 367 343 418 4.61e-19 90.5
Msa0238710 MtrunA17_Chr5g0401821 50.000 76 38 0 291 366 183 258 5.09e-19 87.4
Msa0238710 MtrunA17_Chr8g0335811 48.000 75 38 1 290 364 137 210 6.69e-19 85.9
Msa0238710 MtrunA17_Chr8g0379461 59.016 61 25 0 307 367 76 136 7.01e-19 86.3
Msa0238710 MtrunA17_Chr4g0053281 49.367 79 40 0 291 369 250 328 7.92e-19 88.2
Msa0238710 MtrunA17_Chr2g0293481 51.316 76 37 0 307 382 267 342 1.43e-18 89.0
Msa0238710 MtrunA17_Chr1g0184691 46.429 84 45 0 291 374 277 360 1.63e-18 87.4
Msa0238710 MtrunA17_Chr2g0284321 56.452 62 27 0 307 368 35 96 2.03e-18 84.3
Msa0238710 MtrunA17_Chr2g0319961 54.286 70 32 0 298 367 71 140 2.81e-18 85.1
Msa0238710 MtrunA17_Chr3g0129361 46.667 75 39 1 290 364 127 200 3.42e-18 83.6
Msa0238710 MtrunA17_Chr8g0386241 45.570 79 42 1 292 370 88 165 4.95e-18 82.0
Msa0238710 MtrunA17_Chr3g0129321 47.297 74 38 1 294 367 105 177 5.28e-18 82.8
Msa0238710 MtrunA17_Chr7g0228941 49.296 71 36 0 294 364 39 109 7.79e-18 79.7
Msa0238710 MtrunA17_Chr1g0188941 41.667 84 48 1 284 367 28 110 8.38e-18 79.3
Msa0238710 MtrunA17_Chr4g0071521 50.000 74 37 0 291 364 229 302 1.70e-17 83.6
Msa0238710 MtrunA17_Chr7g0248691 50.000 74 37 0 304 377 151 224 1.75e-17 84.0
Msa0238710 MtrunA17_Chr2g0289181 34.074 135 79 3 302 426 9 143 4.21e-17 80.9
Msa0238710 MtrunA17_Chr8g0383351 46.053 76 39 2 290 364 142 216 7.16e-17 80.1
Msa0238710 MtrunA17_Chr8g0348311 36.036 111 66 1 272 377 115 225 7.47e-17 82.0
Msa0238710 MtrunA17_Chr3g0139021 47.297 74 39 0 291 364 298 371 8.51e-17 82.8
Msa0238710 MtrunA17_Chr8g0387501 44.444 72 40 0 306 377 128 199 1.13e-15 77.4
Msa0238710 MtrunA17_Chr6g0485431 46.667 75 38 2 294 367 141 214 1.19e-14 75.9
Msa0238710 MtrunA17_Chr7g0238921 37.190 121 59 3 267 372 70 188 1.55e-14 74.7
Msa0238710 MtrunA17_Chr1g0202461 46.479 71 38 0 307 377 261 331 2.29e-14 75.1
Msa0238710 MtrunA17_Chr1g0189391 43.056 72 39 2 294 364 84 154 1.40e-13 72.0
Msa0238710 MtrunA17_Chr5g0432071 41.558 77 43 2 308 384 105 179 1.86e-13 69.7
Msa0238710 MtrunA17_Chr3g0126391 54.237 59 25 1 306 362 132 190 4.02e-13 70.9
Msa0238710 MtrunA17_Chr8g0347251 49.275 69 28 2 306 367 135 203 4.37e-12 67.8
Msa0238710 MtrunA17_Chr7g0244971 35.294 102 63 2 288 386 103 204 7.50e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0238710 AT1G62300.1 50.825 606 182 30 1 544 1 552 1.50e-152 449
Msa0238710 AT4G04450.1 52.299 522 158 23 62 535 25 503 1.92e-141 420
Msa0238710 AT4G04450.2 55.088 452 119 21 125 535 1 409 1.84e-129 385
Msa0238710 AT4G22070.4 52.990 485 167 19 43 479 1 472 3.93e-120 365
Msa0238710 AT4G22070.3 52.990 485 167 19 43 479 1 472 3.93e-120 365
Msa0238710 AT4G22070.2 52.990 485 167 19 43 479 1 472 3.93e-120 365
Msa0238710 AT4G22070.1 52.990 485 167 19 43 479 1 472 3.93e-120 365
Msa0238710 AT4G01720.1 42.032 433 179 15 110 532 73 443 1.06e-63 217
Msa0238710 AT5G15130.1 33.261 460 211 13 143 536 35 464 4.58e-50 181
Msa0238710 AT1G68150.1 40.711 253 108 8 146 388 96 316 6.86e-49 174
Msa0238710 AT5G15130.2 33.186 452 206 13 151 536 1 422 2.81e-48 176
Msa0238710 AT1G18860.1 32.573 482 249 13 132 537 30 511 1.92e-43 162
Msa0238710 AT1G69810.1 33.846 325 191 8 128 437 14 329 1.52e-41 154
Msa0238710 AT1G69810.2 53.691 149 63 3 290 437 128 271 6.43e-37 140
Msa0238710 AT4G31800.1 34.156 243 123 5 145 385 47 254 1.37e-31 124
Msa0238710 AT1G80840.1 31.641 256 114 7 116 367 8 206 4.07e-29 117
Msa0238710 AT4G31800.2 50.505 99 44 2 292 385 91 189 7.17e-25 103
Msa0238710 AT2G38470.1 49.451 91 45 1 289 379 344 433 8.09e-25 108
Msa0238710 AT2G38470.1 51.667 60 27 2 308 367 185 242 2.48e-13 73.2
Msa0238710 AT4G26640.5 53.846 78 35 1 290 367 188 264 6.80e-24 104
Msa0238710 AT4G26640.5 37.363 91 55 2 277 367 5 93 5.72e-13 71.2
Msa0238710 AT4G26640.6 53.846 78 35 1 290 367 188 264 6.80e-24 104
Msa0238710 AT4G26640.6 37.363 91 55 2 277 367 5 93 5.72e-13 71.2
Msa0238710 AT4G26640.4 53.846 78 35 1 290 367 188 264 6.80e-24 104
Msa0238710 AT4G26640.4 37.363 91 55 2 277 367 5 93 5.72e-13 71.2
Msa0238710 AT4G26640.3 53.846 78 35 1 290 367 188 264 6.80e-24 104
Msa0238710 AT4G26640.3 37.363 91 55 2 277 367 5 93 5.72e-13 71.2
Msa0238710 AT2G25000.2 48.864 88 45 0 285 372 81 168 1.18e-23 100
Msa0238710 AT2G25000.4 48.864 88 45 0 285 372 81 168 1.18e-23 100
Msa0238710 AT2G25000.3 46.237 93 50 0 280 372 98 190 1.38e-23 100
Msa0238710 AT4G26640.1 53.846 78 35 1 290 367 292 368 1.60e-23 104
Msa0238710 AT4G26640.1 37.363 91 55 2 277 367 109 197 6.65e-13 71.6
Msa0238710 AT4G26640.7 53.846 78 35 1 290 367 324 400 1.61e-23 104
Msa0238710 AT4G26640.7 37.363 91 55 2 277 367 141 229 6.65e-13 71.6
Msa0238710 AT1G29860.1 36.774 155 86 4 248 396 82 230 1.98e-23 100
Msa0238710 AT1G13960.2 53.571 84 38 1 284 367 233 315 2.23e-23 102
Msa0238710 AT1G13960.2 51.667 60 27 2 308 367 77 134 2.02e-12 69.3
Msa0238710 AT2G25000.1 48.864 88 45 0 285 372 124 211 2.28e-23 100
Msa0238710 AT4G26640.2 53.846 78 35 1 290 367 364 440 2.32e-23 104
Msa0238710 AT4G26640.2 37.363 91 55 2 277 367 181 269 7.73e-13 71.6
Msa0238710 AT1G13960.1 53.571 84 38 1 284 367 386 468 2.80e-23 103
Msa0238710 AT1G13960.1 51.667 60 27 2 308 367 230 287 1.45e-12 70.5
Msa0238710 AT5G26170.1 51.389 72 34 1 293 364 99 169 4.62e-23 96.7
Msa0238710 AT5G56270.1 49.438 89 44 1 281 369 461 548 5.42e-23 103
Msa0238710 AT5G56270.1 50.820 61 28 2 308 368 274 332 5.69e-12 68.9
Msa0238710 AT4G18170.1 48.913 92 45 2 277 367 141 231 9.98e-23 99.8
Msa0238710 AT5G49520.1 51.948 77 36 1 291 367 205 280 1.03e-22 100
Msa0238710 AT2G03340.1 51.163 86 41 1 284 369 392 476 2.06e-22 101
Msa0238710 AT2G03340.1 51.667 60 27 2 308 367 251 308 5.68e-13 72.0
Msa0238710 AT5G07100.2 47.126 87 45 1 281 367 115 200 3.08e-22 95.9
Msa0238710 AT5G07100.2 41.096 73 42 1 308 380 25 96 2.01e-11 64.3
Msa0238710 AT5G07100.4 47.126 87 45 1 281 367 115 200 3.08e-22 95.9
Msa0238710 AT5G07100.4 41.096 73 42 1 308 380 25 96 2.01e-11 64.3
Msa0238710 AT5G07100.5 47.126 87 45 1 281 367 115 200 3.08e-22 95.9
Msa0238710 AT5G07100.5 41.096 73 42 1 308 380 25 96 2.01e-11 64.3
Msa0238710 AT5G07100.3 47.126 87 45 1 281 367 115 200 3.08e-22 95.9
Msa0238710 AT5G07100.3 41.096 73 42 1 308 380 25 96 2.01e-11 64.3
Msa0238710 AT2G04880.2 44.828 87 47 1 286 372 262 347 3.60e-22 100
Msa0238710 AT2G04880.2 46.970 66 33 2 305 370 109 172 3.24e-12 69.3
Msa0238710 AT2G04880.1 44.828 87 47 1 286 372 286 371 4.78e-22 100
Msa0238710 AT2G04880.1 46.970 66 33 2 305 370 109 172 3.88e-12 69.3
Msa0238710 AT5G07100.1 47.126 87 45 1 281 367 208 293 5.25e-22 97.4
Msa0238710 AT5G07100.1 41.096 73 42 1 308 380 118 189 3.74e-11 65.1
Msa0238710 AT1G64000.1 48.235 85 43 1 281 365 88 171 6.00e-22 94.4
Msa0238710 AT5G41570.1 53.750 80 35 2 287 365 77 155 6.71e-22 93.6
Msa0238710 AT5G46350.1 48.864 88 43 2 294 380 170 256 1.09e-21 96.7
Msa0238710 AT3G01080.1 47.619 84 43 1 284 367 283 365 3.62e-21 96.7
Msa0238710 AT3G01080.1 51.667 60 27 2 308 367 168 225 2.27e-11 66.6
Msa0238710 AT3G01080.2 47.619 84 43 1 284 367 321 403 4.26e-21 96.7
Msa0238710 AT3G01080.2 51.667 60 27 2 308 367 206 263 2.22e-11 66.6
Msa0238710 AT2G30250.1 51.250 80 38 1 290 369 311 389 6.64e-21 95.5
Msa0238710 AT2G47260.1 43.243 111 58 2 283 389 150 259 7.99e-21 94.4
Msa0238710 AT2G46130.1 48.780 82 41 1 284 365 7 87 1.19e-20 87.8
Msa0238710 AT1G55600.1 44.444 90 49 1 280 369 280 368 1.60e-20 95.1
Msa0238710 AT5G13080.1 43.000 100 56 1 267 366 27 125 1.74e-20 88.6
Msa0238710 AT4G30935.1 44.554 101 45 3 291 383 315 412 3.76e-20 94.0
Msa0238710 AT4G26440.1 45.545 101 52 2 291 391 356 453 5.51e-20 94.0
Msa0238710 AT2G30590.1 50.000 82 40 1 291 371 297 378 1.02e-19 91.7
Msa0238710 AT3G01970.1 43.137 102 57 1 263 364 21 121 1.35e-19 85.9
Msa0238710 AT1G29280.1 51.429 70 34 0 298 367 65 134 1.39e-19 89.4
Msa0238710 AT4G31800.3 31.683 202 101 5 145 344 47 213 1.81e-19 88.2
Msa0238710 AT1G69310.4 42.353 85 48 1 280 364 120 203 2.06e-19 89.4
Msa0238710 AT1G69310.2 42.353 85 48 1 280 364 120 203 2.06e-19 89.4
Msa0238710 AT1G69310.1 42.353 85 48 1 280 364 120 203 2.06e-19 89.4
Msa0238710 AT2G44745.1 40.909 88 51 1 277 364 115 201 2.58e-19 87.4
Msa0238710 AT2G23320.1 57.627 59 25 0 308 366 241 299 4.46e-19 89.0
Msa0238710 AT5G64810.1 47.887 71 36 1 294 364 97 166 5.40e-19 85.9
Msa0238710 AT4G24240.1 50.000 76 38 0 291 366 265 340 1.10e-18 88.2
Msa0238710 AT3G62340.1 50.000 78 38 1 294 371 105 181 1.30e-18 86.7
Msa0238710 AT5G28650.1 48.649 74 38 0 291 364 246 319 2.10e-18 87.0
Msa0238710 AT3G58710.1 52.857 70 33 0 298 367 62 131 2.37e-18 85.9
Msa0238710 AT3G58710.2 52.857 70 33 0 298 367 61 130 2.49e-18 85.9
Msa0238710 AT4G39410.1 43.902 82 45 1 283 364 199 279 2.74e-18 86.3
Msa0238710 AT2G34830.1 48.193 83 42 1 293 374 200 282 9.38e-18 86.3
Msa0238710 AT3G04670.1 47.297 74 39 0 291 364 246 319 1.13e-17 84.7
Msa0238710 AT1G30650.1 48.193 83 42 1 293 374 202 284 1.16e-17 85.9
Msa0238710 AT2G34830.2 48.193 83 42 1 293 374 209 291 1.21e-17 85.9
Msa0238710 AT2G24570.1 48.649 74 38 0 291 364 227 300 1.30e-17 84.7
Msa0238710 AT4G23550.1 45.679 81 44 0 302 382 135 215 1.98e-17 84.0
Msa0238710 AT4G31550.1 47.297 74 39 0 291 364 230 303 2.53e-17 84.0
Msa0238710 AT4G31550.2 47.297 74 39 0 291 364 229 302 2.69e-17 83.6
Msa0238710 AT4G01250.1 49.296 71 36 0 307 377 128 198 3.32e-17 82.8
Msa0238710 AT2G37260.3 49.333 75 34 2 302 373 264 337 7.65e-17 82.8
Msa0238710 AT2G37260.3 42.105 76 42 2 308 383 86 159 9.01e-14 73.2
Msa0238710 AT2G37260.2 49.333 75 34 2 302 373 262 335 7.71e-17 82.8
Msa0238710 AT2G37260.2 42.105 76 42 2 308 383 84 157 8.94e-14 73.2
Msa0238710 AT5G52830.1 46.753 77 41 0 301 377 159 235 1.20e-16 82.0
Msa0238710 AT2G37260.1 49.333 75 34 2 302 373 344 417 1.48e-16 82.8
Msa0238710 AT2G37260.1 42.105 76 42 2 308 383 166 239 1.47e-13 73.2
Msa0238710 AT2G46130.2 45.122 82 40 2 284 365 7 83 9.10e-16 73.6
Msa0238710 AT1G69310.3 38.824 85 47 2 280 364 120 199 1.72e-14 74.7
Msa0238710 AT5G45050.4 50.000 76 36 1 292 367 1028 1101 3.08e-14 76.6
Msa0238710 AT5G45050.1 54.098 61 28 0 307 367 1180 1240 3.09e-14 76.6
Msa0238710 AT5G45050.2 54.098 61 28 0 307 367 1152 1212 3.24e-14 76.6
Msa0238710 AT2G21900.1 43.939 66 36 1 302 367 104 168 6.62e-14 71.2
Msa0238710 AT5G45260.1 39.216 102 55 3 283 382 1189 1285 2.97e-13 73.6
Msa0238710 AT5G43290.1 41.667 72 40 2 294 364 100 170 4.04e-13 70.5
Msa0238710 AT2G46400.1 41.772 79 44 1 286 362 83 161 9.56e-12 66.6
Msa0238710 AT3G01080.3 51.667 60 27 2 308 367 206 263 9.85e-12 67.0
Msa0238710 AT2G40740.1 47.297 74 34 2 308 376 174 247 3.03e-11 65.1
Msa0238710 AT2G40740.3 47.297 74 34 2 308 376 183 256 4.42e-11 64.7

Find 119 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTTGTGTTTCTGATTC+TGG 0.066609 2_2:+12521517 None:intergenic
CTAAATATTCCTTTGTTCTT+AGG 0.146906 2_2:-12520283 Msa0238710:exon
ATAGCTCTTGCTAATAAATT+TGG 0.198143 2_2:+12520780 None:intergenic
CTTTGAAATTGCAATGGATT+TGG 0.199677 2_2:+12520672 None:intergenic
GTTTATTATATATTATTATA+TGG 0.291752 2_2:-12522924 Msa0238710:exon
TTGACAGGAAATCCTAAAAT+AGG 0.296916 2_2:+12522782 None:intergenic
GCGAGAACAGCGGTGAAATT+AGG 0.306985 2_2:+12520411 None:intergenic
TTTGAAATTGCAATGGATTT+GGG 0.309204 2_2:+12520673 None:intergenic
GCTGCTATCTCCTCCATTAT+TGG 0.315481 2_2:-12520387 Msa0238710:CDS
ATTAGATATGTTGAAGGAAT+AGG 0.320945 2_2:+12523000 None:intergenic
TGAGAGTGAGATATTGGAAT+TGG 0.324537 2_2:+12522860 None:intergenic
AAAGGGTGAGAGTGAGATAT+TGG 0.336997 2_2:+12522854 None:intergenic
GGATGCCAATGGAGGAAATA+TGG 0.352069 2_2:-12521263 Msa0238710:CDS
CGCCGTTGGTGTTACGGGTA+AGG 0.353888 2_2:+12522759 None:intergenic
TAAATCCAATATCATCAAAA+AGG 0.354383 2_2:-12522645 Msa0238710:CDS
GTCTTCGCCGTTGGTGTTAC+GGG 0.361102 2_2:+12522754 None:intergenic
TGCATGGCCACCACCAATAA+TGG 0.361861 2_2:+12520374 None:intergenic
CTTGAGATAGGTACTACTAA+TGG 0.365396 2_2:-12521649 Msa0238710:CDS
CGTCTTCGCCGTTGGTGTTA+CGG 0.365794 2_2:+12522753 None:intergenic
CAAGTACCTAGTTTCTTTCA+AGG 0.368680 2_2:-12520627 Msa0238710:CDS
AGGAATAGCAATGGTAAAAC+TGG 0.382516 2_2:-12521553 Msa0238710:CDS
CTGCAAAGCCGTGTAATTAC+CGG 0.385725 2_2:+12522147 None:intergenic
AAAGAGATTAGATATGTTGA+AGG 0.386115 2_2:+12522994 None:intergenic
AAACTCACTTGTTTGCGAAC+TGG 0.388176 2_2:+12521173 None:intergenic
TTTGTCCATATTTCCTCCAT+TGG 0.390389 2_2:+12521258 None:intergenic
TACTACAGATTGATCACTTC+CGG 0.396054 2_2:+12522434 None:intergenic
AAACTAGGTACTTGATGAAA+TGG 0.398773 2_2:+12520636 None:intergenic
CTTCAATTGTCTCAAGAAGT+TGG 0.400880 2_2:-12520543 Msa0238710:CDS
CCAAGACAATTTCTTGAGAT+AGG 0.405230 2_2:-12521661 Msa0238710:CDS
CCCCTCAATCCCAAAACATA+TGG 0.412646 2_2:+12520155 None:intergenic
GCAGCAAGCATGTTACTATC+AGG 0.425873 2_2:-12520834 Msa0238710:CDS
AGGAATAGGAGAGAGTAGAG+AGG 0.438660 2_2:+12523014 None:intergenic
GCCATAGCTGCTGGTGGTAG+TGG 0.442906 2_2:+12520879 None:intergenic
AGGAGAGAGTAGAGAGGGAG+AGG 0.445376 2_2:+12523020 None:intergenic
GGCGGTGATAGCAGCGGTGG+CGG 0.446253 2_2:+12520437 None:intergenic
ATCTCCTCCATTATTGGTGG+TGG 0.457394 2_2:-12520381 Msa0238710:CDS
GGAATAGGAGAGAGTAGAGA+GGG 0.459992 2_2:+12523015 None:intergenic
CTATAGTATGCTCGAGGACA+TGG 0.465899 2_2:+12521218 None:intergenic
GGCGGTGACCGGAAAATAAC+CGG 0.466327 2_2:-12522731 Msa0238710:CDS
GAGATGCTAAGTCATGTTAC+CGG 0.472299 2_2:-12522166 Msa0238710:CDS
AGCATACTATAGATGCACTA+TGG 0.487105 2_2:-12521207 Msa0238710:CDS
ACGGCGAAGACGGCGGTGAC+CGG 0.490027 2_2:-12522742 Msa0238710:CDS
ATTATTATATGGACAAAGCA+TGG 0.490606 2_2:-12522913 Msa0238710:exon
GTGTTACGGGTAAGGTTGAC+AGG 0.491562 2_2:+12522767 None:intergenic
ATTTGCTTGATCTGCAACAT+TGG 0.493278 2_2:+12521459 None:intergenic
ATTAGGTACCTCAGTAGTCT+TGG 0.494392 2_2:+12522374 None:intergenic
TGCTAGATCAGAAGCTTCAA+TGG 0.495447 2_2:-12521398 Msa0238710:intron
TGTTGTTGCTATTGTTTGCA+TGG 0.495497 2_2:+12520358 None:intergenic
TGCCGAGGACAAAACAATCT+TGG 0.496599 2_2:-12520931 Msa0238710:CDS
TGTTGGTTGTGTTCATTTGA+AGG 0.504024 2_2:+12522671 None:intergenic
CAGAATCAGAAACACAAGGC+TGG 0.504762 2_2:-12521516 Msa0238710:CDS
AATAGGAAACATTCTATCGT+TGG 0.514918 2_2:+12522799 None:intergenic
AGAATCAGAAACACAAGGCT+GGG 0.517077 2_2:-12521515 Msa0238710:CDS
CCATTGCTATTCCTCATCTG+AGG 0.520104 2_2:+12521562 None:intergenic
GTGAGATCTAATGTAACAGT+AGG 0.521520 2_2:+12520708 None:intergenic
TTATTATATGGACAAAGCAT+GGG 0.526634 2_2:-12522912 Msa0238710:exon
GATCAATCTGTAGTAGATGA+TGG 0.527093 2_2:-12522426 Msa0238710:CDS
ATATATAATAAACAAACAAA+AGG 0.528509 2_2:+12522934 None:intergenic
GTCACCGCCGTCTTCGCCGT+TGG 0.533790 2_2:+12522745 None:intergenic
GGATCAATGTCAAGTGCAGA+TGG 0.534800 2_2:-12520813 Msa0238710:CDS
ATAGCAATGGTAAAACTGGT+AGG 0.540414 2_2:-12521549 Msa0238710:CDS
AGAGAAGAAATCGACTTCAC+CGG 0.540783 2_2:+12522712 None:intergenic
ATCTTGGTAACAACATATGA+AGG 0.541003 2_2:-12520915 Msa0238710:CDS
GCTATCTCCTCCATTATTGG+TGG 0.542504 2_2:-12520384 Msa0238710:CDS
CGTAACACCAACGGCGAAGA+CGG 0.544973 2_2:-12522752 Msa0238710:CDS
GATGCCATTGCCATAGCTGC+TGG 0.545474 2_2:+12520870 None:intergenic
TCCACTACCACCAGCAGCTA+TGG 0.548560 2_2:-12520880 Msa0238710:CDS
CCAAGGTGTTGGTGGAGCAA+TGG 0.549924 2_2:-12521686 Msa0238710:CDS
GAATCACCACACTGAAAATG+AGG 0.553361 2_2:-12522098 Msa0238710:intron
TGATATTGGATTTAACATGT+TGG 0.558451 2_2:+12522654 None:intergenic
CCATTGCTCCACCAACACCT+TGG 0.560146 2_2:+12521686 None:intergenic
TCTACCTTGTTCAACAAGCA+TGG 0.561460 2_2:-12520757 Msa0238710:CDS
ATTAACATGGATATTAGAAG+TGG 0.561723 2_2:+12522595 None:intergenic
CCTATCTCAAGAAATTGTCT+TGG 0.566117 2_2:+12521661 None:intergenic
TCAGCTTGCACAATTGCAAG+TGG 0.569056 2_2:-12522227 Msa0238710:intron
TAGCTGCTGGTGGTAGTGGA+TGG 0.573308 2_2:+12520883 None:intergenic
AATTGCAAGTGGAGCTTCAG+CGG 0.573437 2_2:-12522216 Msa0238710:CDS
ATATAATTGCAGATAAGTGA+TGG 0.573518 2_2:-12521284 Msa0238710:intron
TCATGTTACCGGTAATTACA+CGG 0.577854 2_2:-12522155 Msa0238710:CDS
TTGTTGGCTTGGAGCTTGTG+TGG 0.580944 2_2:+12520506 None:intergenic
CTGACCGAGTCAGCTAAAGA+AGG 0.586174 2_2:+12520462 None:intergenic
TTCTGTCCTTGAAAGAAACT+AGG 0.586929 2_2:+12520621 None:intergenic
TGAGGTCTTTGAAATTGCAA+TGG 0.588002 2_2:+12520666 None:intergenic
ACATGGATATTAGAAGTGGA+AGG 0.594815 2_2:+12522599 None:intergenic
TAACATGCTTGCTGCTGCTG+AGG 0.595156 2_2:+12520842 None:intergenic
TAGCAATGGTAAAACTGGTA+GGG 0.595770 2_2:-12521548 Msa0238710:CDS
ACAGCCTTCTTTAGCTGACT+CGG 0.597997 2_2:-12520466 Msa0238710:CDS
TAAGGAAGCTTACATTAACA+TGG 0.598862 2_2:+12522582 None:intergenic
TCGTTGGTATAAGTAGATGA+TGG 0.603216 2_2:+12522815 None:intergenic
AACCTTACCCGTAACACCAA+CGG 0.603945 2_2:-12522761 Msa0238710:CDS
AATGAGAAAAGCTCGTGTCT+CGG 0.604308 2_2:-12521425 Msa0238710:CDS
TCTAATGTAACAGTAGGGAA+TGG 0.608110 2_2:+12520714 None:intergenic
GGCTTTGCAGATGCAACTTG+TGG 0.608912 2_2:-12522134 Msa0238710:CDS
GGTTTACAACTTGCAAACAC+CGG 0.613072 2_2:-12522453 Msa0238710:CDS
ATCGGCGGTGATAGCAGCGG+TGG 0.617279 2_2:+12520434 None:intergenic
TGAGATCTAATGTAACAGTA+GGG 0.618128 2_2:+12520709 None:intergenic
GAGTCAGCTAAAGAAGGCTG+TGG 0.624335 2_2:+12520468 None:intergenic
GATCAAACACACCTCAGATG+AGG 0.626860 2_2:-12521573 Msa0238710:CDS
ATAGGTTCAACGTTGTGCCG+AGG 0.627663 2_2:-12520946 Msa0238710:intron
TATAGATGCACTATGGCAGT+CGG 0.632166 2_2:-12521200 Msa0238710:CDS
TGATGAAATGGTGCATGTTG+AGG 0.633017 2_2:+12520648 None:intergenic
AACAAGGAACCTAAGAACAA+AGG 0.634270 2_2:+12520274 None:intergenic
GTTGCCATGCTTGTTGAACA+AGG 0.639105 2_2:+12520753 None:intergenic
GAATCAGAAACACAAGGCTG+GGG 0.640268 2_2:-12521514 Msa0238710:CDS
GATAGCAGCTGCGAGAACAG+CGG 0.642227 2_2:+12520401 None:intergenic
AGCGGTGAAATTAGGATCGG+CGG 0.644865 2_2:+12520419 None:intergenic
AACAGCGGTGAAATTAGGAT+CGG 0.645945 2_2:+12520416 None:intergenic
ACCACCAGCAGCTATGGCAA+TGG 0.647355 2_2:-12520874 Msa0238710:CDS
GCCATTGCCATAGCTGCTGG+TGG 0.651575 2_2:+12520873 None:intergenic
TAAGTGATGGATGCCAATGG+AGG 0.670782 2_2:-12521271 Msa0238710:CDS
AACACCAACGGCGAAGACGG+CGG 0.671264 2_2:-12522749 Msa0238710:CDS
GTGCATCTATAGTATGCTCG+AGG 0.675667 2_2:+12521212 None:intergenic
CCTCAGATGAGGAATAGCAA+TGG 0.676716 2_2:-12521562 Msa0238710:CDS
TATTATATGGACAAAGCATG+GGG 0.678619 2_2:-12522911 Msa0238710:exon
AGGATCGGCGGTGATAGCAG+CGG 0.681008 2_2:+12520431 None:intergenic
ATGGCCACCACCAATAATGG+AGG 0.694001 2_2:+12520377 None:intergenic
TAAACGTGCCAAGACTACTG+AGG 0.716111 2_2:-12522382 Msa0238710:intron
AGATAAGTGATGGATGCCAA+TGG 0.716557 2_2:-12521274 Msa0238710:CDS
AGTCCAGAATCAGAAACACA+AGG 0.719780 2_2:-12521520 Msa0238710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATATATTTTTAAAAA+AGG + chr2_2:12522836-12522855 None:intergenic 0.0%
!! ATATATAATAAACAAACAAA+AGG + chr2_2:12520135-12520154 None:intergenic 10.0%
!!! AATATTTTATCATTGAATTT+TGG + chr2_2:12520530-12520549 None:intergenic 10.0%
!! AATTAATATTGTTAAAATTC+AGG - chr2_2:12521329-12521348 Msa0238710:intron 10.0%
!! AGAAATATGAGAAATTAATA+AGG + chr2_2:12520505-12520524 None:intergenic 15.0%
!! AACATACACTAAATTAAATT+AGG + chr2_2:12520712-12520731 None:intergenic 15.0%
!! AATTAAATCACAATTGATTA+AGG - chr2_2:12521710-12521729 Msa0238710:CDS 15.0%
!!! ATTGATGTTTTTTTGTTAAT+AGG - chr2_2:12522102-12522121 Msa0238710:CDS 15.0%
!! TAATATTTATCTGAAAAACA+AGG + chr2_2:12522811-12522830 None:intergenic 15.0%
!! TAAATCCAATATCATCAAAA+AGG - chr2_2:12520421-12520440 Msa0238710:CDS 20.0%
!! TTTGTTCAAATATTATAGAC+TGG - chr2_2:12520592-12520611 Msa0238710:CDS 20.0%
!! GTTTATATATCAATTTCATC+TGG + chr2_2:12520805-12520824 None:intergenic 20.0%
!! TATGGAATTCAAATCTTAAA+TGG - chr2_2:12521089-12521108 Msa0238710:intron 20.0%
!!! TATAATCAGTCAAAATTTTC+TGG - chr2_2:12522499-12522518 Msa0238710:intron 20.0%
!!! ATTATTCCTTTTTTTGTACA+TGG - chr2_2:12522851-12522870 Msa0238710:CDS 20.0%
!!! TTATTCCTTTTTTTGTACAT+GGG - chr2_2:12522852-12522871 Msa0238710:CDS 20.0%
!!! TTTTTCACATTGAATAATCT+AGG - chr2_2:12522993-12523012 Msa0238710:five_prime_UTR 20.0%
! ATTAGATATGTTGAAGGAAT+AGG + chr2_2:12520069-12520088 None:intergenic 25.0%
! AAAGAGATTAGATATGTTGA+AGG + chr2_2:12520075-12520094 None:intergenic 25.0%
! ATTATTATATGGACAAAGCA+TGG - chr2_2:12520153-12520172 Msa0238710:three_prime_UTR 25.0%
! TTATTATATGGACAAAGCAT+GGG - chr2_2:12520154-12520173 Msa0238710:three_prime_UTR 25.0%
!! GATAGAATGTTTCCTATTTT+AGG - chr2_2:12520272-12520291 Msa0238710:three_prime_UTR 25.0%
! TGATATTGGATTTAACATGT+TGG + chr2_2:12520415-12520434 None:intergenic 25.0%
!!! AATCTCCTTTTTGATGATAT+TGG + chr2_2:12520429-12520448 None:intergenic 25.0%
! ATTAACATGGATATTAGAAG+TGG + chr2_2:12520474-12520493 None:intergenic 25.0%
! TTAGTGTATGTTTGATATCA+CGG - chr2_2:12520720-12520739 Msa0238710:CDS 25.0%
! GACTTTGTAAACTCAAAATA+TGG - chr2_2:12521071-12521090 Msa0238710:intron 25.0%
! CAATCTGGCATATAATATAA+GGG + chr2_2:12521295-12521314 None:intergenic 25.0%
! TTATTAACATGTTACCAATC+TGG + chr2_2:12521310-12521329 None:intergenic 25.0%
!!! AATATTTTCTGAGACTTGTT+TGG + chr2_2:12521579-12521598 None:intergenic 25.0%
!! TTTCTAACTGAATTTTGTGA+TGG - chr2_2:12521757-12521776 Msa0238710:intron 25.0%
! ATATAATTGCAGATAAGTGA+TGG - chr2_2:12521782-12521801 Msa0238710:intron 25.0%
!!! CATTTGGACTATTTTTTTAG+TGG + chr2_2:12521954-12521973 None:intergenic 25.0%
! AATTTAGAAAAAGCGACATT+TGG + chr2_2:12521970-12521989 None:intergenic 25.0%
! ATAGCTCTTGCTAATAAATT+TGG + chr2_2:12522289-12522308 None:intergenic 25.0%
!! TTTGAAATTGCAATGGATTT+GGG + chr2_2:12522396-12522415 None:intergenic 25.0%
!! AATACAATTAGCAACTTTTC+AGG - chr2_2:12522757-12522776 Msa0238710:CDS 25.0%
! CTAAATATTCCTTTGTTCTT+AGG - chr2_2:12522783-12522802 Msa0238710:CDS 25.0%
!!! TCTTTTTAGTCCATATGTTT+TGG - chr2_2:12522901-12522920 Msa0238710:CDS 25.0%
!!! CTTTTTAGTCCATATGTTTT+GGG - chr2_2:12522902-12522921 Msa0238710:CDS 25.0%
TATTATATGGACAAAGCATG+GGG - chr2_2:12520155-12520174 Msa0238710:three_prime_UTR 30.0%
!!! GCTGTTTTGAAGGTAAAAAA+GGG + chr2_2:12520232-12520251 None:intergenic 30.0%
AATAGGAAACATTCTATCGT+TGG + chr2_2:12520270-12520289 None:intergenic 30.0%
TTGACAGGAAATCCTAAAAT+AGG + chr2_2:12520287-12520306 None:intergenic 30.0%
TAAGGAAGCTTACATTAACA+TGG + chr2_2:12520487-12520506 None:intergenic 30.0%
! TAATTACCTCATTTTCAGTG+TGG + chr2_2:12520977-12520996 None:intergenic 30.0%
TTCATGACATGTCAATTTAG+TGG - chr2_2:12521039-12521058 Msa0238710:intron 30.0%
TATACTAACATCTCATATGC+AGG + chr2_2:12521167-12521186 None:intergenic 30.0%
CCAATCTGGCATATAATATA+AGG + chr2_2:12521296-12521315 None:intergenic 30.0%
CCTTATATTATATGCCAGAT+TGG - chr2_2:12521293-12521312 Msa0238710:intron 30.0%
GAGGAAATATGGACAAAAAA+TGG - chr2_2:12521814-12521833 Msa0238710:intron 30.0%
TATGGACAAAAAATGGCTAA+AGG - chr2_2:12521821-12521840 Msa0238710:intron 30.0%
TTAGTGACGAAATTAGAGAT+AGG - chr2_2:12521989-12522008 Msa0238710:intron 30.0%
! ATCTTGGTAACAACATATGA+AGG - chr2_2:12522151-12522170 Msa0238710:CDS 30.0%
TGAGATCTAATGTAACAGTA+GGG + chr2_2:12522360-12522379 None:intergenic 30.0%
!! CTTTGAAATTGCAATGGATT+TGG + chr2_2:12522397-12522416 None:intergenic 30.0%
AAACTAGGTACTTGATGAAA+TGG + chr2_2:12522433-12522452 None:intergenic 30.0%
ACTTTCCCATGTACAAAAAA+AGG + chr2_2:12522860-12522879 None:intergenic 30.0%
TGAGAGTGAGATATTGGAAT+TGG + chr2_2:12520209-12520228 None:intergenic 35.0%
!!! GGCTGTTTTGAAGGTAAAAA+AGG + chr2_2:12520233-12520252 None:intergenic 35.0%
TCGTTGGTATAAGTAGATGA+TGG + chr2_2:12520254-12520273 None:intergenic 35.0%
! TGTTGGTTGTGTTCATTTGA+AGG + chr2_2:12520398-12520417 None:intergenic 35.0%
ACATGGATATTAGAAGTGGA+AGG + chr2_2:12520470-12520489 None:intergenic 35.0%
TACTACAGATTGATCACTTC+CGG + chr2_2:12520635-12520654 None:intergenic 35.0%
GATCAATCTGTAGTAGATGA+TGG - chr2_2:12520640-12520659 Msa0238710:CDS 35.0%
TCATGTTACCGGTAATTACA+CGG - chr2_2:12520911-12520930 Msa0238710:CDS 35.0%
GGTTGTTAATGCAAAAACTG+AGG - chr2_2:12521350-12521369 Msa0238710:intron 35.0%
AAAACTGAGGAGAAAAACCA+AGG - chr2_2:12521363-12521382 Msa0238710:intron 35.0%
CCTATCTCAAGAAATTGTCT+TGG + chr2_2:12521408-12521427 None:intergenic 35.0%
CCAAGACAATTTCTTGAGAT+AGG - chr2_2:12521405-12521424 Msa0238710:CDS 35.0%
CTTGAGATAGGTACTACTAA+TGG - chr2_2:12521417-12521436 Msa0238710:CDS 35.0%
AGGAATAGCAATGGTAAAAC+TGG - chr2_2:12521513-12521532 Msa0238710:CDS 35.0%
ATAGCAATGGTAAAACTGGT+AGG - chr2_2:12521517-12521536 Msa0238710:CDS 35.0%
TAGCAATGGTAAAACTGGTA+GGG - chr2_2:12521518-12521537 Msa0238710:CDS 35.0%
ATTTGCTTGATCTGCAACAT+TGG + chr2_2:12521610-12521629 None:intergenic 35.0%
TTTGTCCATATTTCCTCCAT+TGG + chr2_2:12521811-12521830 None:intergenic 35.0%
AGCATACTATAGATGCACTA+TGG - chr2_2:12521859-12521878 Msa0238710:intron 35.0%
!! TACCAAGATTGTTTTGTCCT+CGG + chr2_2:12522140-12522159 None:intergenic 35.0%
TCTAATGTAACAGTAGGGAA+TGG + chr2_2:12522355-12522374 None:intergenic 35.0%
GTGAGATCTAATGTAACAGT+AGG + chr2_2:12522361-12522380 None:intergenic 35.0%
!! TGAGGTCTTTGAAATTGCAA+TGG + chr2_2:12522403-12522422 None:intergenic 35.0%
CAAGTACCTAGTTTCTTTCA+AGG - chr2_2:12522439-12522458 Msa0238710:CDS 35.0%
TTCTGTCCTTGAAAGAAACT+AGG + chr2_2:12522448-12522467 None:intergenic 35.0%
CTTCAATTGTCTCAAGAAGT+TGG - chr2_2:12522523-12522542 Msa0238710:intron 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG + chr2_2:12522579-12522598 None:intergenic 35.0%
! TGTTGTTGCTATTGTTTGCA+TGG + chr2_2:12522711-12522730 None:intergenic 35.0%
AACAAGGAACCTAAGAACAA+AGG + chr2_2:12522795-12522814 None:intergenic 35.0%
!!! TCCATATGTTTTGGGATTGA+GGG - chr2_2:12522910-12522929 Msa0238710:exon 35.0%
AAAGGGTGAGAGTGAGATAT+TGG + chr2_2:12520215-12520234 None:intergenic 40.0%
!! GTAGATGATGGCTGTTTTGA+AGG + chr2_2:12520242-12520261 None:intergenic 40.0%
! AGAGAAGAAATCGACTTCAC+CGG + chr2_2:12520357-12520376 None:intergenic 40.0%
! AGAAGTGGAAGGCTTTTCAT+CGG + chr2_2:12520459-12520478 None:intergenic 40.0%
GGTTTACAACTTGCAAACAC+CGG - chr2_2:12520613-12520632 Msa0238710:CDS 40.0%
ATTAGGTACCTCAGTAGTCT+TGG + chr2_2:12520695-12520714 None:intergenic 40.0%
GAGATGCTAAGTCATGTTAC+CGG - chr2_2:12520900-12520919 Msa0238710:CDS 40.0%
GAATCACCACACTGAAAATG+AGG - chr2_2:12520968-12520987 Msa0238710:intron 40.0%
AGTCCAGAATCAGAAACACA+AGG - chr2_2:12521546-12521565 Msa0238710:CDS 40.0%
AGAATCAGAAACACAAGGCT+GGG - chr2_2:12521551-12521570 Msa0238710:CDS 40.0%
AATGAGAAAAGCTCGTGTCT+CGG - chr2_2:12521641-12521660 Msa0238710:CDS 40.0%
TGCTAGATCAGAAGCTTCAA+TGG - chr2_2:12521668-12521687 Msa0238710:CDS 40.0%
!! AGATAAGTGATGGATGCCAA+TGG - chr2_2:12521792-12521811 Msa0238710:intron 40.0%
TATAGATGCACTATGGCAGT+CGG - chr2_2:12521866-12521885 Msa0238710:intron 40.0%
AAACTCACTTGTTTGCGAAC+TGG + chr2_2:12521896-12521915 None:intergenic 40.0%
TCTACCTTGTTCAACAAGCA+TGG - chr2_2:12522309-12522328 Msa0238710:intron 40.0%
TGATGAAATGGTGCATGTTG+AGG + chr2_2:12522421-12522440 None:intergenic 40.0%
! TGTTGTTGTTGTTGTTGGCT+TGG + chr2_2:12522574-12522593 None:intergenic 40.0%
AACAGCGGTGAAATTAGGAT+CGG + chr2_2:12522653-12522672 None:intergenic 40.0%
!!! GTCCATATGTTTTGGGATTG+AGG - chr2_2:12522909-12522928 Msa0238710:exon 40.0%
!!! CCATATGTTTTGGGATTGAG+GGG - chr2_2:12522911-12522930 Msa0238710:exon 40.0%
GGAATAGGAGAGAGTAGAGA+GGG + chr2_2:12520054-12520073 None:intergenic 45.0%
AGGAATAGGAGAGAGTAGAG+AGG + chr2_2:12520055-12520074 None:intergenic 45.0%
AACCTTACCCGTAACACCAA+CGG - chr2_2:12520305-12520324 Msa0238710:CDS 45.0%
!! CGACTTCACCGGTTATTTTC+CGG + chr2_2:12520346-12520365 None:intergenic 45.0%
TAAACGTGCCAAGACTACTG+AGG - chr2_2:12520684-12520703 Msa0238710:CDS 45.0%
TCAGCTTGCACAATTGCAAG+TGG - chr2_2:12520839-12520858 Msa0238710:CDS 45.0%
AATTGCAAGTGGAGCTTCAG+CGG - chr2_2:12520850-12520869 Msa0238710:CDS 45.0%
CTGCAAAGCCGTGTAATTAC+CGG + chr2_2:12520922-12520941 None:intergenic 45.0%
GAGGAGAAAAACCAAGGTGT+TGG - chr2_2:12521369-12521388 Msa0238710:intron 45.0%
!! GAGAAAAACCAAGGTGTTGG+TGG - chr2_2:12521372-12521391 Msa0238710:intron 45.0%
GATCAAACACACCTCAGATG+AGG - chr2_2:12521493-12521512 Msa0238710:CDS 45.0%
! CCATTGCTATTCCTCATCTG+AGG + chr2_2:12521507-12521526 None:intergenic 45.0%
CCTCAGATGAGGAATAGCAA+TGG - chr2_2:12521504-12521523 Msa0238710:CDS 45.0%
! CAGCCTTGTGTTTCTGATTC+TGG + chr2_2:12521552-12521571 None:intergenic 45.0%
CAGAATCAGAAACACAAGGC+TGG - chr2_2:12521550-12521569 Msa0238710:CDS 45.0%
GAATCAGAAACACAAGGCTG+GGG - chr2_2:12521552-12521571 Msa0238710:CDS 45.0%
!! TAAGTGATGGATGCCAATGG+AGG - chr2_2:12521795-12521814 Msa0238710:intron 45.0%
GGATGCCAATGGAGGAAATA+TGG - chr2_2:12521803-12521822 Msa0238710:intron 45.0%
CTATAGTATGCTCGAGGACA+TGG + chr2_2:12521851-12521870 None:intergenic 45.0%
GTGCATCTATAGTATGCTCG+AGG + chr2_2:12521857-12521876 None:intergenic 45.0%
TGCCGAGGACAAAACAATCT+TGG - chr2_2:12522135-12522154 Msa0238710:CDS 45.0%
GCAGCAAGCATGTTACTATC+AGG - chr2_2:12522232-12522251 Msa0238710:intron 45.0%
GGATCAATGTCAAGTGCAGA+TGG - chr2_2:12522253-12522272 Msa0238710:intron 45.0%
! GTTGCCATGCTTGTTGAACA+AGG + chr2_2:12522316-12522335 None:intergenic 45.0%
ACAGCCTTCTTTAGCTGACT+CGG - chr2_2:12522600-12522619 Msa0238710:CDS 45.0%
GCTGCTATCTCCTCCATTAT+TGG - chr2_2:12522679-12522698 Msa0238710:CDS 45.0%
GCTATCTCCTCCATTATTGG+TGG - chr2_2:12522682-12522701 Msa0238710:CDS 45.0%
ATCTCCTCCATTATTGGTGG+TGG - chr2_2:12522685-12522704 Msa0238710:CDS 45.0%
CCCCTCAATCCCAAAACATA+TGG + chr2_2:12522914-12522933 None:intergenic 45.0%
!! GTTTATTATATATTATTATA+TGG - chr2_2:12520142-12520161 Msa0238710:three_prime_UTR 5.0%
GTGTTACGGGTAAGGTTGAC+AGG + chr2_2:12520302-12520321 None:intergenic 50.0%
GGCTTTGCAGATGCAACTTG+TGG - chr2_2:12520932-12520951 Msa0238710:CDS 50.0%
ATAGGTTCAACGTTGTGCCG+AGG - chr2_2:12522120-12522139 Msa0238710:CDS 50.0%
! TAACATGCTTGCTGCTGCTG+AGG + chr2_2:12522227-12522246 None:intergenic 50.0%
!! TTGTTGGCTTGGAGCTTGTG+TGG + chr2_2:12522563-12522582 None:intergenic 50.0%
GAGTCAGCTAAAGAAGGCTG+TGG + chr2_2:12522601-12522620 None:intergenic 50.0%
CTGACCGAGTCAGCTAAAGA+AGG + chr2_2:12522607-12522626 None:intergenic 50.0%
AGCGGTGAAATTAGGATCGG+CGG + chr2_2:12522650-12522669 None:intergenic 50.0%
GCGAGAACAGCGGTGAAATT+AGG + chr2_2:12522658-12522677 None:intergenic 50.0%
ATGGCCACCACCAATAATGG+AGG + chr2_2:12522692-12522711 None:intergenic 50.0%
TGCATGGCCACCACCAATAA+TGG + chr2_2:12522695-12522714 None:intergenic 50.0%
AGGAGAGAGTAGAGAGGGAG+AGG + chr2_2:12520049-12520068 None:intergenic 55.0%
!! GTCTTCGCCGTTGGTGTTAC+GGG + chr2_2:12520315-12520334 None:intergenic 55.0%
!! CGTCTTCGCCGTTGGTGTTA+CGG + chr2_2:12520316-12520335 None:intergenic 55.0%
CGTAACACCAACGGCGAAGA+CGG - chr2_2:12520314-12520333 Msa0238710:CDS 55.0%
GGCGGTGACCGGAAAATAAC+CGG - chr2_2:12520335-12520354 Msa0238710:CDS 55.0%
CCATTGCTCCACCAACACCT+TGG + chr2_2:12521383-12521402 None:intergenic 55.0%
!! CCAAGGTGTTGGTGGAGCAA+TGG - chr2_2:12521380-12521399 Msa0238710:intron 55.0%
!! TAGCTGCTGGTGGTAGTGGA+TGG + chr2_2:12522186-12522205 None:intergenic 55.0%
TCCACTACCACCAGCAGCTA+TGG - chr2_2:12522186-12522205 Msa0238710:CDS 55.0%
ACCACCAGCAGCTATGGCAA+TGG - chr2_2:12522192-12522211 Msa0238710:CDS 55.0%
GATGCCATTGCCATAGCTGC+TGG + chr2_2:12522199-12522218 None:intergenic 55.0%
GATAGCAGCTGCGAGAACAG+CGG + chr2_2:12522668-12522687 None:intergenic 55.0%
!! CGCCGTTGGTGTTACGGGTA+AGG + chr2_2:12520310-12520329 None:intergenic 60.0%
AACACCAACGGCGAAGACGG+CGG - chr2_2:12520317-12520336 Msa0238710:CDS 60.0%
GCCATAGCTGCTGGTGGTAG+TGG + chr2_2:12522190-12522209 None:intergenic 60.0%
GCCATTGCCATAGCTGCTGG+TGG + chr2_2:12522196-12522215 None:intergenic 60.0%
AGGATCGGCGGTGATAGCAG+CGG + chr2_2:12522638-12522657 None:intergenic 60.0%
ATCGGCGGTGATAGCAGCGG+TGG + chr2_2:12522635-12522654 None:intergenic 65.0%
GTCACCGCCGTCTTCGCCGT+TGG + chr2_2:12520324-12520343 None:intergenic 70.0%
ACGGCGAAGACGGCGGTGAC+CGG - chr2_2:12520324-12520343 Msa0238710:CDS 70.0%
GGCGGTGATAGCAGCGGTGG+CGG + chr2_2:12522632-12522651 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 12520042 12523046 12520042 ID=Msa0238710;Name=Msa0238710
chr2_2 mRNA 12520042 12523046 12520042 ID=Msa0238710-mRNA-1;Parent=Msa0238710;Name=Msa0238710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=119|1|1|1|1|1|6|260|563
chr2_2 exon 12520042 12520964 12520042 ID=Msa0238710-mRNA-1:exon:5292;Parent=Msa0238710-mRNA-1
chr2_2 exon 12521181 12521294 12521181 ID=Msa0238710-mRNA-1:exon:5291;Parent=Msa0238710-mRNA-1
chr2_2 exon 12521399 12521737 12521399 ID=Msa0238710-mRNA-1:exon:5290;Parent=Msa0238710-mRNA-1
chr2_2 exon 12522099 12522245 12522099 ID=Msa0238710-mRNA-1:exon:5289;Parent=Msa0238710-mRNA-1
chr2_2 exon 12522383 12522478 12522383 ID=Msa0238710-mRNA-1:exon:5288;Parent=Msa0238710-mRNA-1
chr2_2 exon 12522595 12523046 12522595 ID=Msa0238710-mRNA-1:exon:5287;Parent=Msa0238710-mRNA-1
chr2_2 five_prime_UTR 12522928 12523046 12522928 ID=Msa0238710-mRNA-1:five_prime_utr;Parent=Msa0238710-mRNA-1
chr2_2 CDS 12522595 12522927 12522595 ID=Msa0238710-mRNA-1:cds;Parent=Msa0238710-mRNA-1
chr2_2 CDS 12522383 12522478 12522383 ID=Msa0238710-mRNA-1:cds;Parent=Msa0238710-mRNA-1
chr2_2 CDS 12522099 12522245 12522099 ID=Msa0238710-mRNA-1:cds;Parent=Msa0238710-mRNA-1
chr2_2 CDS 12521399 12521737 12521399 ID=Msa0238710-mRNA-1:cds;Parent=Msa0238710-mRNA-1
chr2_2 CDS 12521181 12521294 12521181 ID=Msa0238710-mRNA-1:cds;Parent=Msa0238710-mRNA-1
chr2_2 CDS 12520302 12520964 12520302 ID=Msa0238710-mRNA-1:cds;Parent=Msa0238710-mRNA-1
chr2_2 three_prime_UTR 12520042 12520301 12520042 ID=Msa0238710-mRNA-1:three_prime_utr;Parent=Msa0238710-mRNA-1
Gene Sequence

>Msa0238710

ATGGACAAAGCATGGGGTCTAGCTCTTGATACTTCTTCATCTTCTCCAATTCCAATATCTCACTCTCACCCTTTTTTACCTTCAAAACAGCCATCATCTACTTATACCAACGATAGAATGTTTCCTATTTTAGGATTTCCTGTCAACCTTACCCGTAACACCAACGGCGAAGACGGCGGTGACCGGAAAATAACCGGTGAAGTCGATTTCTTCTCTGAAAGAAACAAACTATCACCTTCAAATGAACACAACCAACATGTTAAATCCAATATCATCAAAAAGGAGATTGTTTCAACCGATGAAAAGCCTTCCACTTCTAATATCCATGTTAATACTGGTTTACAACTTGCAAACACCGGAAGTGATCAATCTGTAGTAGATGATGGAGTTACATCTGATGCTGAAAATAAACGTGCCAAGACTACTGAGCTTGCACAATTGCAAGTGGAGCTTCAGCGGATGAATTCAGAGAACAAAAAGCTGAAAGAGATGCTAAGTCATGTTACCGGTAATTACACGGCTTTGCAGATGCAACTTGTGGCATTAATGCAAAAGAATCACCACACTGAAAATGAGGTTGTTAATGCAAAAACTGAGGAGAAAAACCAAGGTGTTGGTGGAGCAATGGTACCAAGACAATTTCTTGAGATAGGTACTACTAATGGAACAGCAGAAGTTGAAGATCAAGTATCAAACTCATCATCTGATGAAAGAACAAGATCAAACACACCTCAGATGAGGAATAGCAATGGTAAAACTGGTAGGGAAGACAGTCCAGAATCAGAAACACAAGGCTGGGGACCAAACAAGTCTCAGAAAATATTGAACTCTTCCAATGTTGCAGATCAAGCAAATACAGAAGCTACAATGAGAAAAGCTCGTGTCTCGGTTCGTGCTAGATCAGAAGCTTCAATGATAAGTGATGGATGCCAATGGAGGAAATATGGACAAAAAATGGCTAAAGGAAATCCATGTCCTCGAGCATACTATAGATGCACTATGGCAGTCGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGACAAAACAATCTTGGTAACAACATATGAAGGAACACATAACCATCCACTACCACCAGCAGCTATGGCAATGGCATCAACAACCTCAGCAGCAGCAAGCATGTTACTATCAGGATCAATGTCAAGTGCAGATGGAATAATGACACCAAATTTATTAGCAAGAGCTATTCTACCTTGTTCAACAAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCTACTGTTACATTAGATCTCACACAAAATTCAAACCCAAATCCATTGCAATTTCAAAGACCTCAACATGCACCATTTCATCAAGTACCTAGTTTCTTTCAAGGACAGAATCAGAATTTTGCACAAGCAGCAGCATCATTTTATAATCAGTCAAAATTTTCTGGTCTTCAATTGTCTCAAGAAGTTGGTTCTTCTCATTTAACCACACAAGCTCCAAGCCAACAACAACAACAACAACAACCACAGCCTTCTTTAGCTGACTCGGTCAGCGCCGCCACCGCTGCTATCACCGCCGATCCTAATTTCACCGCTGTTCTCGCAGCTGCTATCTCCTCCATTATTGGTGGTGGCCATGCAAACAATAGCAACAACAGCAACAACAACAACAGCAATAGCAGAAATACAATTAGCAACTTTTCAGGAAACTAA
Protein sequence

>Msa0238710

MDKAWGLALDTSSSSPIPISHSHPFLPSKQPSSTYTNDRMFPILGFPVNLTRNTNGEDGGDRKITGEVDFFSERNKLSPSNEHNQHVKSNIIKKEIVSTDEKPSTSNIHVNTGLQLANTGSDQSVVDDGVTSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMQLVALMQKNHHTENEVVNAKTEEKNQGVGGAMVPRQFLEIGTTNGTAEVEDQVSNSSSDERTRSNTPQMRNSNGKTGREDSPESETQGWGPNKSQKILNSSNVADQANTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPNPLQFQRPQHAPFHQVPSFFQGQNQNFAQAAASFYNQSKFSGLQLSQEVGSSHLTTQAPSQQQQQQQPQPSLADSVSAATAAITADPNFTAVLAAAISSIIGGGHANNSNNSNNNNSNSRNTISNFSGN*