Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352310 | XP_003630712.1 | 97.059 | 374 | 11 | 0 | 1 | 374 | 1 | 374 | 0.0 | 741 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352310 | sp|F4JNX2|SDEH4_ARATH | 34.739 | 403 | 203 | 8 | 18 | 373 | 52 | 441 | 5.44e-68 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352310 | G7L7F5 | 97.059 | 374 | 11 | 0 | 1 | 374 | 1 | 374 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa1352310 | 0.805249 | 1.462578e-49 | -8.615850e-47 |
| Msa0025160 | Msa1352310 | 0.822162 | 2.745201e-53 | -8.615850e-47 |
| Msa0034210 | Msa1352310 | 0.802243 | 6.153585e-49 | -8.615850e-47 |
| Msa0050660 | Msa1352310 | 0.825572 | 4.356898e-54 | -8.615850e-47 |
| Msa0050700 | Msa1352310 | 0.823230 | 1.549233e-53 | -8.615850e-47 |
| Msa0050790 | Msa1352310 | 0.825034 | 5.841501e-54 | -8.615850e-47 |
| Msa0094790 | Msa1352310 | 0.807940 | 3.954785e-50 | -8.615850e-47 |
| Msa1352310 | Msa1393780 | 0.827355 | 1.638069e-54 | -8.615850e-47 |
| Msa1352310 | Msa1409410 | 0.807911 | 4.010232e-50 | -8.615850e-47 |
| Msa1352310 | Msa1415540 | 0.808423 | 3.120003e-50 | -8.615850e-47 |
| Msa1352310 | Msa1440630 | 0.821935 | 3.098641e-53 | -8.615850e-47 |
| Msa0644410 | Msa1352310 | 0.817777 | 2.765774e-52 | -8.615850e-47 |
| Msa0675330 | Msa1352310 | 0.803607 | 3.215413e-49 | -8.615850e-47 |
| Msa0707670 | Msa1352310 | 0.915953 | 3.187516e-85 | -8.615850e-47 |
| Msa0128310 | Msa1352310 | 0.815859 | 7.449544e-52 | -8.615850e-47 |
| Msa0146650 | Msa1352310 | 0.812253 | 4.653808e-51 | -8.615850e-47 |
| Msa1315160 | Msa1352310 | 0.804471 | 2.125838e-49 | -8.615850e-47 |
| Msa0419540 | Msa1352310 | 0.815676 | 8.183906e-52 | -8.615850e-47 |
| Msa0426530 | Msa1352310 | 0.831781 | 1.373875e-55 | -8.615850e-47 |
| Msa1042160 | Msa1352310 | 0.806348 | 8.592958e-50 | -8.615850e-47 |
| Msa1042190 | Msa1352310 | 0.804823 | 1.795092e-49 | -8.615850e-47 |
| Msa0330520 | Msa1352310 | 0.802271 | 6.073287e-49 | -8.615850e-47 |
| Msa1123210 | Msa1352310 | 0.825516 | 4.493341e-54 | -8.615850e-47 |
| Msa1167470 | Msa1352310 | 0.801990 | 6.936804e-49 | -8.615850e-47 |
| Msa1192560 | Msa1352310 | 0.803653 | 3.145188e-49 | -8.615850e-47 |
| Msa0517250 | Msa1352310 | 0.824736 | 6.867855e-54 | -8.615850e-47 |
| Msa0528570 | Msa1352310 | 0.804759 | 1.851841e-49 | -8.615850e-47 |
| Msa0541300 | Msa1352310 | 0.803364 | 3.611057e-49 | -8.615850e-47 |
| Msa0541310 | Msa1352310 | 0.801442 | 8.987649e-49 | -8.615850e-47 |
| Msa0573810 | Msa1352310 | 0.910822 | 1.217808e-82 | -8.615850e-47 |
| Msa0597270 | Msa1352310 | 0.820390 | 7.035400e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352310 | MtrunA17_Chr8g0389881 | 97.059 | 374 | 11 | 0 | 1 | 374 | 1 | 374 | 0.0 | 741 |
| Msa1352310 | MtrunA17_Chr6g0486861 | 71.277 | 376 | 99 | 6 | 1 | 372 | 1 | 371 | 0.0 | 546 |
| Msa1352310 | MtrunA17_Chr4g0037211 | 36.522 | 345 | 183 | 8 | 35 | 358 | 57 | 386 | 1.92e-66 | 216 |
| Msa1352310 | MtrunA17_Chr5g0405691 | 33.594 | 384 | 188 | 6 | 28 | 358 | 62 | 431 | 4.26e-64 | 211 |
| Msa1352310 | MtrunA17_Chr6g0486881 | 47.845 | 232 | 98 | 6 | 19 | 247 | 9 | 220 | 3.68e-63 | 201 |
| Msa1352310 | MtrunA17_Chr8g0371621 | 30.471 | 361 | 155 | 7 | 8 | 290 | 42 | 384 | 3.87e-42 | 152 |
| Msa1352310 | MtrunA17_Chr8g0361491 | 94.545 | 55 | 3 | 0 | 49 | 103 | 1 | 55 | 1.13e-30 | 111 |
| Msa1352310 | MtrunA17_Chr8g0371611 | 42.424 | 66 | 38 | 0 | 294 | 359 | 5 | 70 | 3.31e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352310 | AT4G15450.1 | 58.449 | 361 | 126 | 5 | 27 | 370 | 27 | 380 | 3.62e-149 | 427 |
| Msa1352310 | AT4G15450.2 | 57.064 | 361 | 125 | 6 | 27 | 370 | 27 | 374 | 9.43e-143 | 410 |
| Msa1352310 | AT3G21600.1 | 59.312 | 349 | 130 | 5 | 30 | 370 | 29 | 373 | 1.40e-139 | 402 |
| Msa1352310 | AT3G21600.2 | 60.182 | 329 | 119 | 5 | 30 | 350 | 29 | 353 | 1.35e-132 | 384 |
| Msa1352310 | AT3G21600.3 | 53.241 | 216 | 89 | 5 | 30 | 237 | 29 | 240 | 1.79e-74 | 232 |
| Msa1352310 | AT4G35985.1 | 34.739 | 403 | 203 | 8 | 18 | 373 | 52 | 441 | 5.53e-69 | 224 |
| Msa1352310 | AT3G51250.1 | 33.679 | 386 | 186 | 7 | 28 | 356 | 68 | 440 | 1.99e-67 | 220 |
| Msa1352310 | AT2G17840.1 | 34.243 | 403 | 183 | 12 | 13 | 358 | 54 | 431 | 2.59e-59 | 199 |
| Msa1352310 | AT4G35985.3 | 32.948 | 346 | 177 | 7 | 18 | 321 | 52 | 384 | 3.73e-52 | 178 |
| Msa1352310 | AT3G51250.2 | 31.173 | 324 | 153 | 7 | 28 | 294 | 68 | 378 | 6.19e-46 | 161 |
| Msa1352310 | AT2G17840.2 | 31.967 | 366 | 167 | 12 | 13 | 321 | 54 | 394 | 2.43e-44 | 157 |
| Msa1352310 | AT4G35985.2 | 32.301 | 226 | 111 | 5 | 18 | 201 | 52 | 277 | 2.35e-30 | 118 |
| Msa1352310 | AT3G21590.3 | 45.752 | 153 | 80 | 1 | 169 | 321 | 69 | 218 | 1.25e-27 | 108 |
| Msa1352310 | AT3G21590.1 | 42.636 | 129 | 71 | 1 | 169 | 297 | 69 | 194 | 1.54e-18 | 83.6 |
| Msa1352310 | AT3G21590.2 | 42.520 | 127 | 70 | 1 | 169 | 295 | 69 | 192 | 1.02e-17 | 81.6 |
Find 90 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATCTGCATGACTATTT+AGG | 0.176109 | tig0012581:-209665 | None:intergenic |
| ACAGGCTCATCTTTAGTTAA+AGG | 0.239941 | tig0012581:-209054 | None:intergenic |
| AACTTCTTGCCTAAGGTTCT+TGG | 0.255800 | tig0012581:-208884 | None:intergenic |
| ATCCTTAGGAATGCCTTTCC+TGG | 0.310349 | tig0012581:-209990 | None:intergenic |
| TAATGAGGAACTGGAGAAAA+AGG | 0.314849 | tig0012581:-208718 | None:intergenic |
| GTCTTCAATAGTACTACTTC+TGG | 0.322343 | tig0012581:-208851 | None:intergenic |
| TTAAGCAAATCTTTGCTTAG+TGG | 0.324336 | tig0012581:+209918 | Msa1352310:CDS |
| CAATCAAGTTTCTTTGTACT+TGG | 0.327867 | tig0012581:+210784 | Msa1352310:three_prime_UTR |
| TTTCTATCAAAGCTTATTGC+AGG | 0.332190 | tig0012581:+209294 | Msa1352310:CDS |
| TAGGAATGCCTTTCCTGGTT+GGG | 0.339467 | tig0012581:-209985 | None:intergenic |
| TTATGGAAGTTTGAGTTTGC+TGG | 0.358493 | tig0012581:+209167 | Msa1352310:CDS |
| ATTGATCTTGTTCTTCTTCG+AGG | 0.368375 | tig0012581:-209736 | None:intergenic |
| ACTTCTTGCCTAAGGTTCTT+GGG | 0.373704 | tig0012581:-208883 | None:intergenic |
| GAAATTAAATATTTAAAACT+TGG | 0.383018 | tig0012581:-210762 | None:intergenic |
| CATCTAGAATGGTCTCTAAC+AGG | 0.397131 | tig0012581:+210236 | Msa1352310:CDS |
| CTAAACAAATAAAACCTTGT+TGG | 0.397657 | tig0012581:-209367 | None:intergenic |
| GCTGCCTGGAGAGGTGTTGT+TGG | 0.402177 | tig0012581:+210013 | Msa1352310:CDS |
| CCTCTCCAGGCAGCATCCTT+AGG | 0.416321 | tig0012581:-210004 | None:intergenic |
| CGGGCAACGAAAACAGATAA+TGG | 0.418561 | tig0012581:-209095 | None:intergenic |
| ACTAGCTCAAGGCCATTTCA+TGG | 0.421152 | tig0012581:+208963 | Msa1352310:CDS |
| GGTATGGAGGTTTCCATTGG+TGG | 0.421306 | tig0012581:-208829 | None:intergenic |
| AGTGGTGTTGGCATAGTTAG+TGG | 0.423570 | tig0012581:+209936 | Msa1352310:CDS |
| AGGATGCAAAGTTCATTTGA+TGG | 0.433365 | tig0012581:+208921 | Msa1352310:CDS |
| TGGAACAGTGATAGGCCCTT+TGG | 0.434912 | tig0012581:+209956 | Msa1352310:CDS |
| CTGGGTATGGAGGTTTCCAT+TGG | 0.435087 | tig0012581:-208832 | None:intergenic |
| CTTGCTACAGTTATAAAAGT+AGG | 0.435399 | tig0012581:+209015 | Msa1352310:CDS |
| GAAAGCAACAGCACCAAAGC+AGG | 0.436309 | tig0012581:+208770 | Msa1352310:five_prime_UTR |
| TGCTGAAGAAGCTGGATTGA+TGG | 0.437675 | tig0012581:-210705 | None:intergenic |
| TGGAAATGTTAATGAGGAAC+TGG | 0.450595 | tig0012581:-208727 | None:intergenic |
| CATTCTAGATGCAGCTTTCG+AGG | 0.450865 | tig0012581:-210224 | None:intergenic |
| AGCAACTCATATCCCTGCTT+TGG | 0.455292 | tig0012581:-208783 | None:intergenic |
| AAATCTTTGCTTAGTGGTGT+TGG | 0.456818 | tig0012581:+209924 | Msa1352310:CDS |
| TAGCAGCAAAAGCTTCCTTC+TGG | 0.462110 | tig0012581:+208689 | Msa1352310:five_prime_UTR |
| AACAGGTTTGGGGATAATGC+TGG | 0.462361 | tig0012581:+210605 | Msa1352310:intron |
| ATAGTTAGTGGAACAGTGAT+AGG | 0.465529 | tig0012581:+209948 | Msa1352310:CDS |
| TCCATAACAATCTTCTGAAA+AGG | 0.465570 | tig0012581:-209151 | None:intergenic |
| AAAGTTCATTTGATGGATGA+AGG | 0.470206 | tig0012581:+208928 | Msa1352310:CDS |
| AAGCTTATTGCAGGAGGGAC+TGG | 0.473481 | tig0012581:+209303 | Msa1352310:CDS |
| GTATCAGAACTTCTTGCCTA+AGG | 0.476536 | tig0012581:-208891 | None:intergenic |
| GACATGCAGCTAACACTGCT+TGG | 0.478430 | tig0012581:+210660 | Msa1352310:CDS |
| TCCAGCTTCTTCAGCATCCA+AGG | 0.486437 | tig0012581:+210712 | Msa1352310:CDS |
| TTAGGAATGCCTTTCCTGGT+TGG | 0.492672 | tig0012581:-209986 | None:intergenic |
| GAATGTGTTTAAGATAAGAA+AGG | 0.493342 | tig0012581:+210682 | Msa1352310:CDS |
| GAAGCCAACAACACCTCTCC+AGG | 0.495160 | tig0012581:-210017 | None:intergenic |
| TCTTCAATAGTACTACTTCT+GGG | 0.497590 | tig0012581:-208850 | None:intergenic |
| AAGAGGCTCACCATCTTTCA+CGG | 0.501387 | tig0012581:-209115 | None:intergenic |
| CTCGAAAGCTGCATCTAGAA+TGG | 0.505377 | tig0012581:+210225 | Msa1352310:CDS |
| TTTCATGGTAATCAAAACCT+TGG | 0.507129 | tig0012581:+208978 | Msa1352310:CDS |
| CCCTTGGATGCTGAAGAAGC+TGG | 0.507837 | tig0012581:-210713 | None:intergenic |
| ATGCAGGACCCAAGAACCTT+AGG | 0.511103 | tig0012581:+208875 | Msa1352310:CDS |
| ATCAAATGAACTTTGCATCC+TGG | 0.511507 | tig0012581:-208919 | None:intergenic |
| GGTTAAATCCCAACCAGGAA+AGG | 0.518740 | tig0012581:+209977 | Msa1352310:CDS |
| AATAGTACTACTTCTGGGTA+TGG | 0.522311 | tig0012581:-208845 | None:intergenic |
| CCTGGTTGGGATTTAACCAA+AGG | 0.523788 | tig0012581:-209972 | None:intergenic |
| CATGGTAATCAAAACCTTGG+AGG | 0.527008 | tig0012581:+208981 | Msa1352310:CDS |
| AAGTAGGAGAAGATCTTCAA+TGG | 0.531788 | tig0012581:+209031 | Msa1352310:CDS |
| TTGGAAGGAGTTTGCTCCGA+GGG | 0.533309 | tig0012581:+209254 | Msa1352310:CDS |
| CTATCAAAGCTTATTGCAGG+AGG | 0.540727 | tig0012581:+209297 | Msa1352310:CDS |
| ACAGGTTTGGGGATAATGCT+GGG | 0.544267 | tig0012581:+210606 | Msa1352310:intron |
| CTGGTTGGGATTTAACCAAA+GGG | 0.546559 | tig0012581:-209971 | None:intergenic |
| GCATTCCTAAGGATGCTGCC+TGG | 0.549502 | tig0012581:+209999 | Msa1352310:CDS |
| CCTAAGGATGCTGCCTGGAG+AGG | 0.558020 | tig0012581:+210004 | Msa1352310:CDS |
| GAGCATGTATTTGCAACTGC+GGG | 0.564766 | tig0012581:+210638 | Msa1352310:CDS |
| TGATTGTAATCTTCAACCCT+CGG | 0.567569 | tig0012581:-209270 | None:intergenic |
| AGTACTATTGAAGACTATGC+AGG | 0.580566 | tig0012581:+208859 | Msa1352310:CDS |
| TATCAAAGCTTATTGCAGGA+GGG | 0.582026 | tig0012581:+209298 | Msa1352310:CDS |
| TTACTTACTGACTGCATCAA+CGG | 0.583390 | tig0012581:-210039 | None:intergenic |
| AGAGGCTCACCATCTTTCAC+GGG | 0.590880 | tig0012581:-209114 | None:intergenic |
| AACCAGGAAAGGCATTCCTA+AGG | 0.592978 | tig0012581:+209988 | Msa1352310:CDS |
| GATGGTGAGCCTCTTAGCTA+CGG | 0.597136 | tig0012581:+209123 | Msa1352310:CDS |
| AGTACTACTTCTGGGTATGG+AGG | 0.603110 | tig0012581:-208842 | None:intergenic |
| TTCCATTGGTGGCATAACTG+TGG | 0.603164 | tig0012581:-208818 | None:intergenic |
| AAAGCAACAGCACCAAAGCA+GGG | 0.604722 | tig0012581:+208771 | Msa1352310:five_prime_UTR |
| TTCCACAGTTATGCCACCAA+TGG | 0.606555 | tig0012581:+208816 | Msa1352310:CDS |
| TTGGCCTAACAACAGGTTTG+GGG | 0.609199 | tig0012581:+210595 | Msa1352310:intron |
| CCTTTGGTTAAATCCCAACC+AGG | 0.610932 | tig0012581:+209972 | Msa1352310:CDS |
| AGGGACTGGTCAGATTGTGA+AGG | 0.612855 | tig0012581:+209317 | Msa1352310:CDS |
| CAGCAATGCTTACACCAACA+AGG | 0.615781 | tig0012581:+209353 | Msa1352310:CDS |
| AAGGTCAAGCCGTAGCTAAG+AGG | 0.626212 | tig0012581:-209132 | None:intergenic |
| GGGACTGGTCAGATTGTGAA+GGG | 0.629455 | tig0012581:+209318 | Msa1352310:CDS |
| TGGATGTGGAAATGTTAATG+AGG | 0.630523 | tig0012581:-208733 | None:intergenic |
| CCAGCTTCTTCAGCATCCAA+GGG | 0.644852 | tig0012581:+210713 | Msa1352310:CDS |
| AGTAAGAGCAACAAGAGTGT+CGG | 0.655465 | tig0012581:+209711 | Msa1352310:CDS |
| TTTAACTAAAGATGAGCCTG+TGG | 0.662996 | tig0012581:+209056 | Msa1352310:CDS |
| AGAGCATCTAGCTTCACCAC+AGG | 0.663366 | tig0012581:-209072 | None:intergenic |
| AGAGCATGTATTTGCAACTG+CGG | 0.663824 | tig0012581:+210637 | Msa1352310:CDS |
| TCTAGATGCAGCTTTCGAGG+TGG | 0.663909 | tig0012581:-210221 | None:intergenic |
| GAAGTTCTGATACAAATACC+AGG | 0.674691 | tig0012581:+208901 | Msa1352310:CDS |
| ATTGGAAGGAGTTTGCTCCG+AGG | 0.684090 | tig0012581:+209253 | Msa1352310:CDS |
| CAGGTTTGGGGATAATGCTG+GGG | 0.688874 | tig0012581:+210607 | Msa1352310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATTAAATATTTAAAACT+TGG | - | tig0012581:210765-210784 | None:intergenic | 10.0% |
| !!! | GAAATTAAATATTTAAAACT+TGG | - | tig0012581:210765-210784 | None:intergenic | 10.0% |
| !! | ATATTAACATATTGATAAAC+AGG | - | tig0012581:210550-210569 | None:intergenic | 15.0% |
| !! | TTAAATTAATTCATCATTCT+TGG | + | tig0012581:210576-210595 | Msa1352310:intron | 15.0% |
| !! | ATATTAACATATTGATAAAC+AGG | - | tig0012581:210550-210569 | None:intergenic | 15.0% |
| !! | TTAAATTAATTCATCATTCT+TGG | + | tig0012581:210576-210595 | Msa1352310:intron | 15.0% |
| !!! | ACTAAATGATACTTTTTTCA+TGG | - | tig0012581:209579-209598 | None:intergenic | 20.0% |
| !!! | ACAGTAAACTAAGAATTTTT+TGG | + | tig0012581:209602-209621 | Msa1352310:intron | 20.0% |
| !!! | CAGTAAACTAAGAATTTTTT+GGG | + | tig0012581:209603-209622 | Msa1352310:intron | 20.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | - | tig0012581:210400-210419 | None:intergenic | 20.0% |
| !!! | ACTAAATGATACTTTTTTCA+TGG | - | tig0012581:209579-209598 | None:intergenic | 20.0% |
| !!! | ACAGTAAACTAAGAATTTTT+TGG | + | tig0012581:209602-209621 | Msa1352310:intron | 20.0% |
| !!! | CAGTAAACTAAGAATTTTTT+GGG | + | tig0012581:209603-209622 | Msa1352310:intron | 20.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | - | tig0012581:210400-210419 | None:intergenic | 20.0% |
| ! | GTAACAAAAATGATCTTGAT+TGG | + | tig0012581:209235-209254 | Msa1352310:CDS | 25.0% |
| ! | CTAAACAAATAAAACCTTGT+TGG | - | tig0012581:209370-209389 | None:intergenic | 25.0% |
| !!! | AAGGTTTTATTTGTTTAGCA+AGG | + | tig0012581:209372-209391 | Msa1352310:intron | 25.0% |
| !!! | AAACTAAGAATTTTTTGGGA+TGG | + | tig0012581:209607-209626 | Msa1352310:intron | 25.0% |
| ! | AGATCAATAAAAACCTCAAA+CGG | + | tig0012581:209751-209770 | Msa1352310:CDS | 25.0% |
| ! | TAATTTATGTAGTGTACAAG+TGG | + | tig0012581:209815-209834 | Msa1352310:intron | 25.0% |
| !!! | TGTCATAAAGTGTTTTTACT+TGG | - | tig0012581:210072-210091 | None:intergenic | 25.0% |
| ! | GGTTAATGAAGTTCAATTAA+TGG | + | tig0012581:210366-210385 | Msa1352310:intron | 25.0% |
| !! | GAATGTGTTTAAGATAAGAA+AGG | + | tig0012581:210682-210701 | Msa1352310:CDS | 25.0% |
| ! | GTAACAAAAATGATCTTGAT+TGG | + | tig0012581:209235-209254 | Msa1352310:CDS | 25.0% |
| ! | CTAAACAAATAAAACCTTGT+TGG | - | tig0012581:209370-209389 | None:intergenic | 25.0% |
| !!! | AAGGTTTTATTTGTTTAGCA+AGG | + | tig0012581:209372-209391 | Msa1352310:intron | 25.0% |
| !!! | AAACTAAGAATTTTTTGGGA+TGG | + | tig0012581:209607-209626 | Msa1352310:intron | 25.0% |
| ! | AGATCAATAAAAACCTCAAA+CGG | + | tig0012581:209751-209770 | Msa1352310:CDS | 25.0% |
| ! | TAATTTATGTAGTGTACAAG+TGG | + | tig0012581:209815-209834 | Msa1352310:intron | 25.0% |
| !!! | TGTCATAAAGTGTTTTTACT+TGG | - | tig0012581:210072-210091 | None:intergenic | 25.0% |
| ! | GGTTAATGAAGTTCAATTAA+TGG | + | tig0012581:210366-210385 | Msa1352310:intron | 25.0% |
| !! | GAATGTGTTTAAGATAAGAA+AGG | + | tig0012581:210682-210701 | Msa1352310:CDS | 25.0% |
| TCTTCAATAGTACTACTTCT+GGG | - | tig0012581:208853-208872 | None:intergenic | 30.0% | |
| ! | AAAGTTCATTTGATGGATGA+AGG | + | tig0012581:208928-208947 | Msa1352310:CDS | 30.0% |
| !!! | AGGTTTTGATTACCATGAAA+TGG | - | tig0012581:208978-208997 | None:intergenic | 30.0% |
| TTTCATGGTAATCAAAACCT+TGG | + | tig0012581:208978-208997 | Msa1352310:CDS | 30.0% | |
| CTTGCTACAGTTATAAAAGT+AGG | + | tig0012581:209015-209034 | Msa1352310:CDS | 30.0% | |
| ! | ACCTTTTCAGAAGATTGTTA+TGG | + | tig0012581:209150-209169 | Msa1352310:CDS | 30.0% |
| ! | TCCATAACAATCTTCTGAAA+AGG | - | tig0012581:209154-209173 | None:intergenic | 30.0% |
| CAAAAATGATCTTGATTGGA+AGG | + | tig0012581:209239-209258 | Msa1352310:CDS | 30.0% | |
| TTTCTATCAAAGCTTATTGC+AGG | + | tig0012581:209294-209313 | Msa1352310:CDS | 30.0% | |
| AAAAATCACCAGGTACAAAA+AGG | + | tig0012581:209630-209649 | Msa1352310:intron | 30.0% | |
| !! | TCATTTTTGTATACCGTTTG+AGG | - | tig0012581:209767-209786 | None:intergenic | 30.0% |
| TTAAGCAAATCTTTGCTTAG+TGG | + | tig0012581:209918-209937 | Msa1352310:CDS | 30.0% | |
| ACAACAACATTGAGCATAAA+GGG | - | tig0012581:210098-210117 | None:intergenic | 30.0% | |
| AACAACAACATTGAGCATAA+AGG | - | tig0012581:210099-210118 | None:intergenic | 30.0% | |
| ACACGAAGTTAATGAACATT+TGG | - | tig0012581:210417-210436 | None:intergenic | 30.0% | |
| GTTCAGAAGAAATTCTTGAA+TGG | + | tig0012581:210494-210513 | Msa1352310:intron | 30.0% | |
| CAATCAAGTTTCTTTGTACT+TGG | + | tig0012581:210784-210803 | Msa1352310:three_prime_UTR | 30.0% | |
| TTGGTTGTCAAAAAATGAAG+TGG | + | tig0012581:210803-210822 | Msa1352310:three_prime_UTR | 30.0% | |
| TCTTCAATAGTACTACTTCT+GGG | - | tig0012581:208853-208872 | None:intergenic | 30.0% | |
| ! | AAAGTTCATTTGATGGATGA+AGG | + | tig0012581:208928-208947 | Msa1352310:CDS | 30.0% |
| !!! | AGGTTTTGATTACCATGAAA+TGG | - | tig0012581:208978-208997 | None:intergenic | 30.0% |
| TTTCATGGTAATCAAAACCT+TGG | + | tig0012581:208978-208997 | Msa1352310:CDS | 30.0% | |
| CTTGCTACAGTTATAAAAGT+AGG | + | tig0012581:209015-209034 | Msa1352310:CDS | 30.0% | |
| ! | ACCTTTTCAGAAGATTGTTA+TGG | + | tig0012581:209150-209169 | Msa1352310:CDS | 30.0% |
| ! | TCCATAACAATCTTCTGAAA+AGG | - | tig0012581:209154-209173 | None:intergenic | 30.0% |
| CAAAAATGATCTTGATTGGA+AGG | + | tig0012581:209239-209258 | Msa1352310:CDS | 30.0% | |
| TTTCTATCAAAGCTTATTGC+AGG | + | tig0012581:209294-209313 | Msa1352310:CDS | 30.0% | |
| AAAAATCACCAGGTACAAAA+AGG | + | tig0012581:209630-209649 | Msa1352310:intron | 30.0% | |
| !! | TCATTTTTGTATACCGTTTG+AGG | - | tig0012581:209767-209786 | None:intergenic | 30.0% |
| TTAAGCAAATCTTTGCTTAG+TGG | + | tig0012581:209918-209937 | Msa1352310:CDS | 30.0% | |
| ACAACAACATTGAGCATAAA+GGG | - | tig0012581:210098-210117 | None:intergenic | 30.0% | |
| AACAACAACATTGAGCATAA+AGG | - | tig0012581:210099-210118 | None:intergenic | 30.0% | |
| ACACGAAGTTAATGAACATT+TGG | - | tig0012581:210417-210436 | None:intergenic | 30.0% | |
| GTTCAGAAGAAATTCTTGAA+TGG | + | tig0012581:210494-210513 | Msa1352310:intron | 30.0% | |
| CAATCAAGTTTCTTTGTACT+TGG | + | tig0012581:210784-210803 | Msa1352310:three_prime_UTR | 30.0% | |
| TTGGTTGTCAAAAAATGAAG+TGG | + | tig0012581:210803-210822 | Msa1352310:three_prime_UTR | 30.0% | |
| TAATGAGGAACTGGAGAAAA+AGG | - | tig0012581:208721-208740 | None:intergenic | 35.0% | |
| TGGAAATGTTAATGAGGAAC+TGG | - | tig0012581:208730-208749 | None:intergenic | 35.0% | |
| TGGATGTGGAAATGTTAATG+AGG | - | tig0012581:208736-208755 | None:intergenic | 35.0% | |
| !!! | CTGTTGCTTTCTTTTTCTTC+GGG | - | tig0012581:208761-208780 | None:intergenic | 35.0% |
| !!! | GCTGTTGCTTTCTTTTTCTT+CGG | - | tig0012581:208762-208781 | None:intergenic | 35.0% |
| !!! | GATATGAGTTGCTGTTTTCA+TGG | + | tig0012581:208793-208812 | Msa1352310:exon | 35.0% |
| AATAGTACTACTTCTGGGTA+TGG | - | tig0012581:208848-208867 | None:intergenic | 35.0% | |
| GTCTTCAATAGTACTACTTC+TGG | - | tig0012581:208854-208873 | None:intergenic | 35.0% | |
| AGTACTATTGAAGACTATGC+AGG | + | tig0012581:208859-208878 | Msa1352310:CDS | 35.0% | |
| ! | GAAGTTCTGATACAAATACC+AGG | + | tig0012581:208901-208920 | Msa1352310:CDS | 35.0% |
| ATCAAATGAACTTTGCATCC+TGG | - | tig0012581:208922-208941 | None:intergenic | 35.0% | |
| AGGATGCAAAGTTCATTTGA+TGG | + | tig0012581:208921-208940 | Msa1352310:CDS | 35.0% | |
| ! | AAGAGAAACATTTTCCTCCA+AGG | - | tig0012581:208998-209017 | None:intergenic | 35.0% |
| AAGTAGGAGAAGATCTTCAA+TGG | + | tig0012581:209031-209050 | Msa1352310:CDS | 35.0% | |
| ACAGGCTCATCTTTAGTTAA+AGG | - | tig0012581:209057-209076 | None:intergenic | 35.0% | |
| TTTAACTAAAGATGAGCCTG+TGG | + | tig0012581:209056-209075 | Msa1352310:CDS | 35.0% | |
| ! | TTATGGAAGTTTGAGTTTGC+TGG | + | tig0012581:209167-209186 | Msa1352310:CDS | 35.0% |
| TGATTGTAATCTTCAACCCT+CGG | - | tig0012581:209273-209292 | None:intergenic | 35.0% | |
| TATCAAAGCTTATTGCAGGA+GGG | + | tig0012581:209298-209317 | Msa1352310:CDS | 35.0% | |
| TGTATGCATTTCGTAGACTT+GGG | - | tig0012581:209493-209512 | None:intergenic | 35.0% | |
| TTGTATGCATTTCGTAGACT+TGG | - | tig0012581:209494-209513 | None:intergenic | 35.0% | |
| TCTCATCTGCATGACTATTT+AGG | - | tig0012581:209668-209687 | None:intergenic | 35.0% | |
| AGTCATGCAGATGAGAAAAA+TGG | + | tig0012581:209672-209691 | Msa1352310:CDS | 35.0% | |
| ATTGATCTTGTTCTTCTTCG+AGG | - | tig0012581:209739-209758 | None:intergenic | 35.0% | |
| TGTATTTGCAATGTAGTGTG+AGG | + | tig0012581:209871-209890 | Msa1352310:intron | 35.0% | |
| ! | GCTTAACTTTTCTGTCATCT+TGG | - | tig0012581:209904-209923 | None:intergenic | 35.0% |
| AAATCTTTGCTTAGTGGTGT+TGG | + | tig0012581:209924-209943 | Msa1352310:CDS | 35.0% | |
| ATAGTTAGTGGAACAGTGAT+AGG | + | tig0012581:209948-209967 | Msa1352310:CDS | 35.0% | |
| ! | TTACTTACTGACTGCATCAA+CGG | - | tig0012581:210042-210061 | None:intergenic | 35.0% |
| TATGTGTATGTAGCTGGAAT+TGG | - | tig0012581:210302-210321 | None:intergenic | 35.0% | |
| CATACTTATGTGTATGTAGC+TGG | - | tig0012581:210308-210327 | None:intergenic | 35.0% | |
| ! | CGTCAAAAACTACGATTTTC+AGG | - | tig0012581:210335-210354 | None:intergenic | 35.0% |
| ! | GTTTTTGACGCTTAAATTCG+TGG | + | tig0012581:210345-210364 | Msa1352310:intron | 35.0% |
| TAATGAGGAACTGGAGAAAA+AGG | - | tig0012581:208721-208740 | None:intergenic | 35.0% | |
| TGGAAATGTTAATGAGGAAC+TGG | - | tig0012581:208730-208749 | None:intergenic | 35.0% | |
| TGGATGTGGAAATGTTAATG+AGG | - | tig0012581:208736-208755 | None:intergenic | 35.0% | |
| !!! | CTGTTGCTTTCTTTTTCTTC+GGG | - | tig0012581:208761-208780 | None:intergenic | 35.0% |
| !!! | GCTGTTGCTTTCTTTTTCTT+CGG | - | tig0012581:208762-208781 | None:intergenic | 35.0% |
| !!! | GATATGAGTTGCTGTTTTCA+TGG | + | tig0012581:208793-208812 | Msa1352310:exon | 35.0% |
| AATAGTACTACTTCTGGGTA+TGG | - | tig0012581:208848-208867 | None:intergenic | 35.0% | |
| GTCTTCAATAGTACTACTTC+TGG | - | tig0012581:208854-208873 | None:intergenic | 35.0% | |
| AGTACTATTGAAGACTATGC+AGG | + | tig0012581:208859-208878 | Msa1352310:CDS | 35.0% | |
| ! | GAAGTTCTGATACAAATACC+AGG | + | tig0012581:208901-208920 | Msa1352310:CDS | 35.0% |
| ATCAAATGAACTTTGCATCC+TGG | - | tig0012581:208922-208941 | None:intergenic | 35.0% | |
| AGGATGCAAAGTTCATTTGA+TGG | + | tig0012581:208921-208940 | Msa1352310:CDS | 35.0% | |
| ! | AAGAGAAACATTTTCCTCCA+AGG | - | tig0012581:208998-209017 | None:intergenic | 35.0% |
| AAGTAGGAGAAGATCTTCAA+TGG | + | tig0012581:209031-209050 | Msa1352310:CDS | 35.0% | |
| ACAGGCTCATCTTTAGTTAA+AGG | - | tig0012581:209057-209076 | None:intergenic | 35.0% | |
| TTTAACTAAAGATGAGCCTG+TGG | + | tig0012581:209056-209075 | Msa1352310:CDS | 35.0% | |
| ! | TTATGGAAGTTTGAGTTTGC+TGG | + | tig0012581:209167-209186 | Msa1352310:CDS | 35.0% |
| TGATTGTAATCTTCAACCCT+CGG | - | tig0012581:209273-209292 | None:intergenic | 35.0% | |
| TATCAAAGCTTATTGCAGGA+GGG | + | tig0012581:209298-209317 | Msa1352310:CDS | 35.0% | |
| TGTATGCATTTCGTAGACTT+GGG | - | tig0012581:209493-209512 | None:intergenic | 35.0% | |
| TTGTATGCATTTCGTAGACT+TGG | - | tig0012581:209494-209513 | None:intergenic | 35.0% | |
| TCTCATCTGCATGACTATTT+AGG | - | tig0012581:209668-209687 | None:intergenic | 35.0% | |
| AGTCATGCAGATGAGAAAAA+TGG | + | tig0012581:209672-209691 | Msa1352310:CDS | 35.0% | |
| ATTGATCTTGTTCTTCTTCG+AGG | - | tig0012581:209739-209758 | None:intergenic | 35.0% | |
| TGTATTTGCAATGTAGTGTG+AGG | + | tig0012581:209871-209890 | Msa1352310:intron | 35.0% | |
| ! | GCTTAACTTTTCTGTCATCT+TGG | - | tig0012581:209904-209923 | None:intergenic | 35.0% |
| AAATCTTTGCTTAGTGGTGT+TGG | + | tig0012581:209924-209943 | Msa1352310:CDS | 35.0% | |
| ATAGTTAGTGGAACAGTGAT+AGG | + | tig0012581:209948-209967 | Msa1352310:CDS | 35.0% | |
| ! | TTACTTACTGACTGCATCAA+CGG | - | tig0012581:210042-210061 | None:intergenic | 35.0% |
| TATGTGTATGTAGCTGGAAT+TGG | - | tig0012581:210302-210321 | None:intergenic | 35.0% | |
| CATACTTATGTGTATGTAGC+TGG | - | tig0012581:210308-210327 | None:intergenic | 35.0% | |
| ! | CGTCAAAAACTACGATTTTC+AGG | - | tig0012581:210335-210354 | None:intergenic | 35.0% |
| ! | GTTTTTGACGCTTAAATTCG+TGG | + | tig0012581:210345-210364 | Msa1352310:intron | 35.0% |
| AGAAAAAGGTAAAGGCCAGA+AGG | - | tig0012581:208707-208726 | None:intergenic | 40.0% | |
| GGAACTGGAGAAAAAGGTAA+AGG | - | tig0012581:208715-208734 | None:intergenic | 40.0% | |
| ACTTCTTGCCTAAGGTTCTT+GGG | - | tig0012581:208886-208905 | None:intergenic | 40.0% | |
| AACTTCTTGCCTAAGGTTCT+TGG | - | tig0012581:208887-208906 | None:intergenic | 40.0% | |
| GTATCAGAACTTCTTGCCTA+AGG | - | tig0012581:208894-208913 | None:intergenic | 40.0% | |
| ! | GAAGCTTTTGAACTAGCTCA+AGG | + | tig0012581:208952-208971 | Msa1352310:CDS | 40.0% |
| CATGGTAATCAAAACCTTGG+AGG | + | tig0012581:208981-209000 | Msa1352310:CDS | 40.0% | |
| !!! | AAAGAGCACTCTTGCTTTTC+TGG | + | tig0012581:209201-209220 | Msa1352310:CDS | 40.0% |
| CTATCAAAGCTTATTGCAGG+AGG | + | tig0012581:209297-209316 | Msa1352310:CDS | 40.0% | |
| ! | TTTGGGATGGAAAAATCACC+AGG | + | tig0012581:209620-209639 | Msa1352310:intron | 40.0% |
| AATCACCAGGTACAAAAAGG+AGG | + | tig0012581:209633-209652 | Msa1352310:intron | 40.0% | |
| ! | TTTCTCCTCCTTTTTGTACC+TGG | - | tig0012581:209641-209660 | None:intergenic | 40.0% |
| ! | AGATGAGAAAAATGGTGCTG+TGG | + | tig0012581:209680-209699 | Msa1352310:CDS | 40.0% |
| ! | AGTAAGAGCAACAAGAGTGT+CGG | + | tig0012581:209711-209730 | Msa1352310:CDS | 40.0% |
| TGTAGTGTACAAGTGGATGA+TGG | + | tig0012581:209822-209841 | Msa1352310:intron | 40.0% | |
| CTGGTTGGGATTTAACCAAA+GGG | - | tig0012581:209974-209993 | None:intergenic | 40.0% | |
| ! | CATCTAGAATGGTCTCTAAC+AGG | + | tig0012581:210236-210255 | Msa1352310:CDS | 40.0% |
| GAATGGTCTCTAACAGGTAA+AGG | + | tig0012581:210242-210261 | Msa1352310:intron | 40.0% | |
| AGTAAGTAGAGTCAGCTGTT+TGG | - | tig0012581:210279-210298 | None:intergenic | 40.0% | |
| ATCATTCTTGGCCTAACAAC+AGG | + | tig0012581:210588-210607 | Msa1352310:intron | 40.0% | |
| TTATCCCCAAACCTGTTGTT+AGG | - | tig0012581:210602-210621 | None:intergenic | 40.0% | |
| AGAGCATGTATTTGCAACTG+CGG | + | tig0012581:210637-210656 | Msa1352310:CDS | 40.0% | |
| AGAAAAAGGTAAAGGCCAGA+AGG | - | tig0012581:208707-208726 | None:intergenic | 40.0% | |
| GGAACTGGAGAAAAAGGTAA+AGG | - | tig0012581:208715-208734 | None:intergenic | 40.0% | |
| ACTTCTTGCCTAAGGTTCTT+GGG | - | tig0012581:208886-208905 | None:intergenic | 40.0% | |
| AACTTCTTGCCTAAGGTTCT+TGG | - | tig0012581:208887-208906 | None:intergenic | 40.0% | |
| GTATCAGAACTTCTTGCCTA+AGG | - | tig0012581:208894-208913 | None:intergenic | 40.0% | |
| ! | GAAGCTTTTGAACTAGCTCA+AGG | + | tig0012581:208952-208971 | Msa1352310:CDS | 40.0% |
| CATGGTAATCAAAACCTTGG+AGG | + | tig0012581:208981-209000 | Msa1352310:CDS | 40.0% | |
| !!! | AAAGAGCACTCTTGCTTTTC+TGG | + | tig0012581:209201-209220 | Msa1352310:CDS | 40.0% |
| CTATCAAAGCTTATTGCAGG+AGG | + | tig0012581:209297-209316 | Msa1352310:CDS | 40.0% | |
| ! | TTTGGGATGGAAAAATCACC+AGG | + | tig0012581:209620-209639 | Msa1352310:intron | 40.0% |
| AATCACCAGGTACAAAAAGG+AGG | + | tig0012581:209633-209652 | Msa1352310:intron | 40.0% | |
| ! | TTTCTCCTCCTTTTTGTACC+TGG | - | tig0012581:209641-209660 | None:intergenic | 40.0% |
| ! | AGATGAGAAAAATGGTGCTG+TGG | + | tig0012581:209680-209699 | Msa1352310:CDS | 40.0% |
| ! | AGTAAGAGCAACAAGAGTGT+CGG | + | tig0012581:209711-209730 | Msa1352310:CDS | 40.0% |
| TGTAGTGTACAAGTGGATGA+TGG | + | tig0012581:209822-209841 | Msa1352310:intron | 40.0% | |
| CTGGTTGGGATTTAACCAAA+GGG | - | tig0012581:209974-209993 | None:intergenic | 40.0% | |
| ! | CATCTAGAATGGTCTCTAAC+AGG | + | tig0012581:210236-210255 | Msa1352310:CDS | 40.0% |
| GAATGGTCTCTAACAGGTAA+AGG | + | tig0012581:210242-210261 | Msa1352310:intron | 40.0% | |
| AGTAAGTAGAGTCAGCTGTT+TGG | - | tig0012581:210279-210298 | None:intergenic | 40.0% | |
| ATCATTCTTGGCCTAACAAC+AGG | + | tig0012581:210588-210607 | Msa1352310:intron | 40.0% | |
| TTATCCCCAAACCTGTTGTT+AGG | - | tig0012581:210602-210621 | None:intergenic | 40.0% | |
| AGAGCATGTATTTGCAACTG+CGG | + | tig0012581:210637-210656 | Msa1352310:CDS | 40.0% | |
| ! | GAAGGAAGCTTTTGCTGCTA+TGG | - | tig0012581:208689-208708 | None:intergenic | 45.0% |
| TAGCAGCAAAAGCTTCCTTC+TGG | + | tig0012581:208689-208708 | Msa1352310:five_prime_UTR | 45.0% | |
| ! | TTTTTCTTCGGGAGTGGATG+TGG | - | tig0012581:208750-208769 | None:intergenic | 45.0% |
| ! | GCTTTCTTTTTCTTCGGGAG+TGG | - | tig0012581:208756-208775 | None:intergenic | 45.0% |
| AAAGCAACAGCACCAAAGCA+GGG | + | tig0012581:208771-208790 | Msa1352310:five_prime_UTR | 45.0% | |
| AGCAACTCATATCCCTGCTT+TGG | - | tig0012581:208786-208805 | None:intergenic | 45.0% | |
| TTCCACAGTTATGCCACCAA+TGG | + | tig0012581:208816-208835 | Msa1352310:CDS | 45.0% | |
| ! | TTCCATTGGTGGCATAACTG+TGG | - | tig0012581:208821-208840 | None:intergenic | 45.0% |
| AGTACTACTTCTGGGTATGG+AGG | - | tig0012581:208845-208864 | None:intergenic | 45.0% | |
| ACTAGCTCAAGGCCATTTCA+TGG | + | tig0012581:208963-208982 | Msa1352310:CDS | 45.0% | |
| CGGGCAACGAAAACAGATAA+TGG | - | tig0012581:209098-209117 | None:intergenic | 45.0% | |
| ! | TTTTCGTTGCCCGTGAAAGA+TGG | + | tig0012581:209105-209124 | Msa1352310:CDS | 45.0% |
| AAGAGGCTCACCATCTTTCA+CGG | - | tig0012581:209118-209137 | None:intergenic | 45.0% | |
| CAGCAATGCTTACACCAACA+AGG | + | tig0012581:209353-209372 | Msa1352310:CDS | 45.0% | |
| ! | ACAATGAGAGTGTGTGACAC+TGG | + | tig0012581:209510-209529 | Msa1352310:intron | 45.0% |
| !! | AGAAAAATGGTGCTGTGGTC+AGG | + | tig0012581:209685-209704 | Msa1352310:CDS | 45.0% |
| !! | GAAAAATGGTGCTGTGGTCA+GGG | + | tig0012581:209686-209705 | Msa1352310:CDS | 45.0% |
| !! | AGTGGTGTTGGCATAGTTAG+TGG | + | tig0012581:209936-209955 | Msa1352310:CDS | 45.0% |
| CCTGGTTGGGATTTAACCAA+AGG | - | tig0012581:209975-209994 | None:intergenic | 45.0% | |
| CCTTTGGTTAAATCCCAACC+AGG | + | tig0012581:209972-209991 | Msa1352310:CDS | 45.0% | |
| GGTTAAATCCCAACCAGGAA+AGG | + | tig0012581:209977-209996 | Msa1352310:CDS | 45.0% | |
| TAGGAATGCCTTTCCTGGTT+GGG | - | tig0012581:209988-210007 | None:intergenic | 45.0% | |
| TTAGGAATGCCTTTCCTGGT+TGG | - | tig0012581:209989-210008 | None:intergenic | 45.0% | |
| !! | AACCAGGAAAGGCATTCCTA+AGG | + | tig0012581:209988-210007 | Msa1352310:CDS | 45.0% |
| ATCCTTAGGAATGCCTTTCC+TGG | - | tig0012581:209993-210012 | None:intergenic | 45.0% | |
| CATTCTAGATGCAGCTTTCG+AGG | - | tig0012581:210227-210246 | None:intergenic | 45.0% | |
| CTCGAAAGCTGCATCTAGAA+TGG | + | tig0012581:210225-210244 | Msa1352310:CDS | 45.0% | |
| TCTTGGCCTAACAACAGGTT+TGG | + | tig0012581:210593-210612 | Msa1352310:intron | 45.0% | |
| CTTGGCCTAACAACAGGTTT+GGG | + | tig0012581:210594-210613 | Msa1352310:intron | 45.0% | |
| TTGGCCTAACAACAGGTTTG+GGG | + | tig0012581:210595-210614 | Msa1352310:intron | 45.0% | |
| AACAGGTTTGGGGATAATGC+TGG | + | tig0012581:210605-210624 | Msa1352310:intron | 45.0% | |
| ACAGGTTTGGGGATAATGCT+GGG | + | tig0012581:210606-210625 | Msa1352310:intron | 45.0% | |
| GAGCATGTATTTGCAACTGC+GGG | + | tig0012581:210638-210657 | Msa1352310:CDS | 45.0% | |
| TGCTGAAGAAGCTGGATTGA+TGG | - | tig0012581:210708-210727 | None:intergenic | 45.0% | |
| !! | AGCATTTTTCAGTACGCCCT+TGG | - | tig0012581:210732-210751 | None:intergenic | 45.0% |
| ! | GAAGGAAGCTTTTGCTGCTA+TGG | - | tig0012581:208689-208708 | None:intergenic | 45.0% |
| TAGCAGCAAAAGCTTCCTTC+TGG | + | tig0012581:208689-208708 | Msa1352310:five_prime_UTR | 45.0% | |
| ! | TTTTTCTTCGGGAGTGGATG+TGG | - | tig0012581:208750-208769 | None:intergenic | 45.0% |
| ! | GCTTTCTTTTTCTTCGGGAG+TGG | - | tig0012581:208756-208775 | None:intergenic | 45.0% |
| AAAGCAACAGCACCAAAGCA+GGG | + | tig0012581:208771-208790 | Msa1352310:five_prime_UTR | 45.0% | |
| AGCAACTCATATCCCTGCTT+TGG | - | tig0012581:208786-208805 | None:intergenic | 45.0% | |
| TTCCACAGTTATGCCACCAA+TGG | + | tig0012581:208816-208835 | Msa1352310:CDS | 45.0% | |
| ! | TTCCATTGGTGGCATAACTG+TGG | - | tig0012581:208821-208840 | None:intergenic | 45.0% |
| AGTACTACTTCTGGGTATGG+AGG | - | tig0012581:208845-208864 | None:intergenic | 45.0% | |
| ACTAGCTCAAGGCCATTTCA+TGG | + | tig0012581:208963-208982 | Msa1352310:CDS | 45.0% | |
| CGGGCAACGAAAACAGATAA+TGG | - | tig0012581:209098-209117 | None:intergenic | 45.0% | |
| ! | TTTTCGTTGCCCGTGAAAGA+TGG | + | tig0012581:209105-209124 | Msa1352310:CDS | 45.0% |
| AAGAGGCTCACCATCTTTCA+CGG | - | tig0012581:209118-209137 | None:intergenic | 45.0% | |
| CAGCAATGCTTACACCAACA+AGG | + | tig0012581:209353-209372 | Msa1352310:CDS | 45.0% | |
| ! | ACAATGAGAGTGTGTGACAC+TGG | + | tig0012581:209510-209529 | Msa1352310:intron | 45.0% |
| !! | AGAAAAATGGTGCTGTGGTC+AGG | + | tig0012581:209685-209704 | Msa1352310:CDS | 45.0% |
| !! | GAAAAATGGTGCTGTGGTCA+GGG | + | tig0012581:209686-209705 | Msa1352310:CDS | 45.0% |
| !! | AGTGGTGTTGGCATAGTTAG+TGG | + | tig0012581:209936-209955 | Msa1352310:CDS | 45.0% |
| CCTGGTTGGGATTTAACCAA+AGG | - | tig0012581:209975-209994 | None:intergenic | 45.0% | |
| CCTTTGGTTAAATCCCAACC+AGG | + | tig0012581:209972-209991 | Msa1352310:CDS | 45.0% | |
| GGTTAAATCCCAACCAGGAA+AGG | + | tig0012581:209977-209996 | Msa1352310:CDS | 45.0% | |
| TAGGAATGCCTTTCCTGGTT+GGG | - | tig0012581:209988-210007 | None:intergenic | 45.0% | |
| TTAGGAATGCCTTTCCTGGT+TGG | - | tig0012581:209989-210008 | None:intergenic | 45.0% | |
| !! | AACCAGGAAAGGCATTCCTA+AGG | + | tig0012581:209988-210007 | Msa1352310:CDS | 45.0% |
| ATCCTTAGGAATGCCTTTCC+TGG | - | tig0012581:209993-210012 | None:intergenic | 45.0% | |
| CATTCTAGATGCAGCTTTCG+AGG | - | tig0012581:210227-210246 | None:intergenic | 45.0% | |
| CTCGAAAGCTGCATCTAGAA+TGG | + | tig0012581:210225-210244 | Msa1352310:CDS | 45.0% | |
| TCTTGGCCTAACAACAGGTT+TGG | + | tig0012581:210593-210612 | Msa1352310:intron | 45.0% | |
| CTTGGCCTAACAACAGGTTT+GGG | + | tig0012581:210594-210613 | Msa1352310:intron | 45.0% | |
| TTGGCCTAACAACAGGTTTG+GGG | + | tig0012581:210595-210614 | Msa1352310:intron | 45.0% | |
| AACAGGTTTGGGGATAATGC+TGG | + | tig0012581:210605-210624 | Msa1352310:intron | 45.0% | |
| ACAGGTTTGGGGATAATGCT+GGG | + | tig0012581:210606-210625 | Msa1352310:intron | 45.0% | |
| GAGCATGTATTTGCAACTGC+GGG | + | tig0012581:210638-210657 | Msa1352310:CDS | 45.0% | |
| TGCTGAAGAAGCTGGATTGA+TGG | - | tig0012581:210708-210727 | None:intergenic | 45.0% | |
| !! | AGCATTTTTCAGTACGCCCT+TGG | - | tig0012581:210732-210751 | None:intergenic | 45.0% |
| GAAAGCAACAGCACCAAAGC+AGG | + | tig0012581:208770-208789 | Msa1352310:five_prime_UTR | 50.0% | |
| GGTATGGAGGTTTCCATTGG+TGG | - | tig0012581:208832-208851 | None:intergenic | 50.0% | |
| CTGGGTATGGAGGTTTCCAT+TGG | - | tig0012581:208835-208854 | None:intergenic | 50.0% | |
| ATGCAGGACCCAAGAACCTT+AGG | + | tig0012581:208875-208894 | Msa1352310:CDS | 50.0% | |
| ! | AGAGCATCTAGCTTCACCAC+AGG | - | tig0012581:209075-209094 | None:intergenic | 50.0% |
| AGAGGCTCACCATCTTTCAC+GGG | - | tig0012581:209117-209136 | None:intergenic | 50.0% | |
| GATGGTGAGCCTCTTAGCTA+CGG | + | tig0012581:209123-209142 | Msa1352310:CDS | 50.0% | |
| AAGGTCAAGCCGTAGCTAAG+AGG | - | tig0012581:209135-209154 | None:intergenic | 50.0% | |
| ! | ATTGGAAGGAGTTTGCTCCG+AGG | + | tig0012581:209253-209272 | Msa1352310:CDS | 50.0% |
| ! | TTGGAAGGAGTTTGCTCCGA+GGG | + | tig0012581:209254-209273 | Msa1352310:CDS | 50.0% |
| AAGCTTATTGCAGGAGGGAC+TGG | + | tig0012581:209303-209322 | Msa1352310:CDS | 50.0% | |
| !! | AGGGACTGGTCAGATTGTGA+AGG | + | tig0012581:209317-209336 | Msa1352310:CDS | 50.0% |
| !! | GGGACTGGTCAGATTGTGAA+GGG | + | tig0012581:209318-209337 | Msa1352310:CDS | 50.0% |
| TGGAACAGTGATAGGCCCTT+TGG | + | tig0012581:209956-209975 | Msa1352310:CDS | 50.0% | |
| TCTAGATGCAGCTTTCGAGG+TGG | - | tig0012581:210224-210243 | None:intergenic | 50.0% | |
| GGTCTCTAACAGGTAAAGGC+TGG | + | tig0012581:210246-210265 | Msa1352310:intron | 50.0% | |
| CAGGTTTGGGGATAATGCTG+GGG | + | tig0012581:210607-210626 | Msa1352310:intron | 50.0% | |
| GACATGCAGCTAACACTGCT+TGG | + | tig0012581:210660-210679 | Msa1352310:CDS | 50.0% | |
| TCCAGCTTCTTCAGCATCCA+AGG | + | tig0012581:210712-210731 | Msa1352310:CDS | 50.0% | |
| CCAGCTTCTTCAGCATCCAA+GGG | + | tig0012581:210713-210732 | Msa1352310:CDS | 50.0% | |
| GAAAGCAACAGCACCAAAGC+AGG | + | tig0012581:208770-208789 | Msa1352310:five_prime_UTR | 50.0% | |
| GGTATGGAGGTTTCCATTGG+TGG | - | tig0012581:208832-208851 | None:intergenic | 50.0% | |
| CTGGGTATGGAGGTTTCCAT+TGG | - | tig0012581:208835-208854 | None:intergenic | 50.0% | |
| ATGCAGGACCCAAGAACCTT+AGG | + | tig0012581:208875-208894 | Msa1352310:CDS | 50.0% | |
| ! | AGAGCATCTAGCTTCACCAC+AGG | - | tig0012581:209075-209094 | None:intergenic | 50.0% |
| AGAGGCTCACCATCTTTCAC+GGG | - | tig0012581:209117-209136 | None:intergenic | 50.0% | |
| GATGGTGAGCCTCTTAGCTA+CGG | + | tig0012581:209123-209142 | Msa1352310:CDS | 50.0% | |
| AAGGTCAAGCCGTAGCTAAG+AGG | - | tig0012581:209135-209154 | None:intergenic | 50.0% | |
| ! | ATTGGAAGGAGTTTGCTCCG+AGG | + | tig0012581:209253-209272 | Msa1352310:CDS | 50.0% |
| ! | TTGGAAGGAGTTTGCTCCGA+GGG | + | tig0012581:209254-209273 | Msa1352310:CDS | 50.0% |
| AAGCTTATTGCAGGAGGGAC+TGG | + | tig0012581:209303-209322 | Msa1352310:CDS | 50.0% | |
| !! | AGGGACTGGTCAGATTGTGA+AGG | + | tig0012581:209317-209336 | Msa1352310:CDS | 50.0% |
| !! | GGGACTGGTCAGATTGTGAA+GGG | + | tig0012581:209318-209337 | Msa1352310:CDS | 50.0% |
| TGGAACAGTGATAGGCCCTT+TGG | + | tig0012581:209956-209975 | Msa1352310:CDS | 50.0% | |
| TCTAGATGCAGCTTTCGAGG+TGG | - | tig0012581:210224-210243 | None:intergenic | 50.0% | |
| GGTCTCTAACAGGTAAAGGC+TGG | + | tig0012581:210246-210265 | Msa1352310:intron | 50.0% | |
| CAGGTTTGGGGATAATGCTG+GGG | + | tig0012581:210607-210626 | Msa1352310:intron | 50.0% | |
| GACATGCAGCTAACACTGCT+TGG | + | tig0012581:210660-210679 | Msa1352310:CDS | 50.0% | |
| TCCAGCTTCTTCAGCATCCA+AGG | + | tig0012581:210712-210731 | Msa1352310:CDS | 50.0% | |
| CCAGCTTCTTCAGCATCCAA+GGG | + | tig0012581:210713-210732 | Msa1352310:CDS | 50.0% | |
| GCATTCCTAAGGATGCTGCC+TGG | + | tig0012581:209999-210018 | Msa1352310:CDS | 55.0% | |
| GAAGCCAACAACACCTCTCC+AGG | - | tig0012581:210020-210039 | None:intergenic | 55.0% | |
| CCCTTGGATGCTGAAGAAGC+TGG | - | tig0012581:210716-210735 | None:intergenic | 55.0% | |
| GCATTCCTAAGGATGCTGCC+TGG | + | tig0012581:209999-210018 | Msa1352310:CDS | 55.0% | |
| GAAGCCAACAACACCTCTCC+AGG | - | tig0012581:210020-210039 | None:intergenic | 55.0% | |
| CCCTTGGATGCTGAAGAAGC+TGG | - | tig0012581:210716-210735 | None:intergenic | 55.0% | |
| CCTCTCCAGGCAGCATCCTT+AGG | - | tig0012581:210007-210026 | None:intergenic | 60.0% | |
| CCTAAGGATGCTGCCTGGAG+AGG | + | tig0012581:210004-210023 | Msa1352310:CDS | 60.0% | |
| !! | GCTGCCTGGAGAGGTGTTGT+TGG | + | tig0012581:210013-210032 | Msa1352310:CDS | 60.0% |
| CCTCTCCAGGCAGCATCCTT+AGG | - | tig0012581:210007-210026 | None:intergenic | 60.0% | |
| CCTAAGGATGCTGCCTGGAG+AGG | + | tig0012581:210004-210023 | Msa1352310:CDS | 60.0% | |
| !! | GCTGCCTGGAGAGGTGTTGT+TGG | + | tig0012581:210013-210032 | Msa1352310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012581 | gene | 208678 | 210866 | 208678 | ID=Msa1352310;Name=Msa1352310 |
| tig0012581 | mRNA | 208678 | 210866 | 208678 | ID=Msa1352310-mRNA-1;Parent=Msa1352310;Name=Msa1352310-mRNA-1;_AED=0.40;_eAED=0.40;_QI=118|1|1|1|1|1|5|94|374 |
| tig0012581 | exon | 208678 | 209374 | 208678 | ID=Msa1352310-mRNA-1:exon:8131;Parent=Msa1352310-mRNA-1 |
| tig0012581 | exon | 209642 | 209772 | 209642 | ID=Msa1352310-mRNA-1:exon:8132;Parent=Msa1352310-mRNA-1 |
| tig0012581 | exon | 209887 | 210053 | 209887 | ID=Msa1352310-mRNA-1:exon:8133;Parent=Msa1352310-mRNA-1 |
| tig0012581 | exon | 210173 | 210257 | 210173 | ID=Msa1352310-mRNA-1:exon:8134;Parent=Msa1352310-mRNA-1 |
| tig0012581 | exon | 210610 | 210866 | 210610 | ID=Msa1352310-mRNA-1:exon:8135;Parent=Msa1352310-mRNA-1 |
| tig0012581 | five_prime_UTR | 208678 | 208795 | 208678 | ID=Msa1352310-mRNA-1:five_prime_utr;Parent=Msa1352310-mRNA-1 |
| tig0012581 | CDS | 208796 | 209374 | 208796 | ID=Msa1352310-mRNA-1:cds;Parent=Msa1352310-mRNA-1 |
| tig0012581 | CDS | 209642 | 209772 | 209642 | ID=Msa1352310-mRNA-1:cds;Parent=Msa1352310-mRNA-1 |
| tig0012581 | CDS | 209887 | 210053 | 209887 | ID=Msa1352310-mRNA-1:cds;Parent=Msa1352310-mRNA-1 |
| tig0012581 | CDS | 210173 | 210257 | 210173 | ID=Msa1352310-mRNA-1:cds;Parent=Msa1352310-mRNA-1 |
| tig0012581 | CDS | 210610 | 210772 | 210610 | ID=Msa1352310-mRNA-1:cds;Parent=Msa1352310-mRNA-1 |
| tig0012581 | three_prime_UTR | 210773 | 210866 | 210773 | ID=Msa1352310-mRNA-1:three_prime_utr;Parent=Msa1352310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
