Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573810 | XP_003630712.1 | 96.791 | 374 | 12 | 0 | 1 | 374 | 1 | 374 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573810 | sp|F4JNX2|SDEH4_ARATH | 34.988 | 403 | 202 | 8 | 18 | 373 | 52 | 441 | 3.99e-68 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573810 | G7L7F5 | 96.791 | 374 | 12 | 0 | 1 | 374 | 1 | 374 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0573810 | 0.803961 | 2.714504e-49 | -8.615850e-47 |
| Msa0025160 | Msa0573810 | 0.841196 | 5.503514e-58 | -8.615850e-47 |
| Msa0034210 | Msa0573810 | 0.802288 | 6.023871e-49 | -8.615850e-47 |
| Msa0050660 | Msa0573810 | 0.831143 | 1.972862e-55 | -8.615850e-47 |
| Msa0050700 | Msa0573810 | 0.830553 | 2.752882e-55 | -8.615850e-47 |
| Msa0050790 | Msa0573810 | 0.823305 | 1.487658e-53 | -8.615850e-47 |
| Msa0072520 | Msa0573810 | 0.827681 | 1.367743e-54 | -8.615850e-47 |
| Msa0094790 | Msa0573810 | 0.822799 | 1.952472e-53 | -8.615850e-47 |
| Msa0121330 | Msa0573810 | 0.803615 | 3.203345e-49 | -8.615850e-47 |
| Msa0128310 | Msa0573810 | 0.805345 | 1.396159e-49 | -8.615850e-47 |
| Msa0146650 | Msa0573810 | 0.802023 | 6.829265e-49 | -8.615850e-47 |
| Msa0230870 | Msa0573810 | 0.804493 | 2.103987e-49 | -8.615850e-47 |
| Msa0419540 | Msa0573810 | 0.801450 | 8.951715e-49 | -8.615850e-47 |
| Msa0472950 | Msa0573810 | 0.806230 | 9.097258e-50 | -8.615850e-47 |
| Msa0284800 | Msa0573810 | 0.815201 | 1.043500e-51 | -8.615850e-47 |
| Msa0330520 | Msa0573810 | 0.815269 | 1.007808e-51 | -8.615850e-47 |
| Msa0517250 | Msa0573810 | 0.815832 | 7.551349e-52 | -8.615850e-47 |
| Msa0528570 | Msa0573810 | 0.814983 | 1.166466e-51 | -8.615850e-47 |
| Msa0541300 | Msa0573810 | 0.824661 | 7.152508e-54 | -8.615850e-47 |
| Msa0541310 | Msa0573810 | 0.825390 | 4.810979e-54 | -8.615850e-47 |
| Msa0573810 | Msa0585020 | 0.822224 | 2.656384e-53 | -8.615850e-47 |
| Msa0573810 | Msa0597270 | 0.829857 | 4.071065e-55 | -8.615850e-47 |
| Msa0573810 | Msa0616210 | 0.807579 | 4.718135e-50 | -8.615850e-47 |
| Msa0573810 | Msa0644410 | 0.811014 | 8.652775e-51 | -8.615850e-47 |
| Msa0573810 | Msa0655700 | 0.811505 | 6.769749e-51 | -8.615850e-47 |
| Msa0573810 | Msa0675330 | 0.826873 | 2.136246e-54 | -8.615850e-47 |
| Msa0573810 | Msa0699540 | 0.809618 | 1.731049e-50 | -8.615850e-47 |
| Msa0573810 | Msa0706150 | 0.802180 | 6.340695e-49 | -8.615850e-47 |
| Msa0573810 | Msa0707670 | 0.916222 | 2.307670e-85 | -8.615850e-47 |
| Msa0573810 | Msa0720410 | 0.806768 | 7.008444e-50 | -8.615850e-47 |
| Msa0573810 | Msa0989500 | 0.811880 | 5.611797e-51 | -8.615850e-47 |
| Msa0573810 | Msa1029530 | 0.823785 | 1.149136e-53 | -8.615850e-47 |
| Msa0573810 | Msa1068400 | 0.821196 | 4.591198e-53 | -8.615850e-47 |
| Msa0573810 | Msa1192560 | 0.818710 | 1.700268e-52 | -8.615850e-47 |
| Msa0573810 | Msa1192590 | 0.819904 | 9.091239e-53 | -8.615850e-47 |
| Msa0573810 | Msa1228630 | 0.804021 | 2.637961e-49 | -8.615850e-47 |
| Msa0573810 | Msa1315160 | 0.814254 | 1.691715e-51 | -8.615850e-47 |
| Msa0573810 | Msa1352310 | 0.910822 | 1.217808e-82 | -8.615850e-47 |
| Msa0573810 | Msa1362620 | 0.807715 | 4.414543e-50 | -8.615850e-47 |
| Msa0573810 | Msa1393780 | 0.807659 | 4.537370e-50 | -8.615850e-47 |
| Msa0573810 | Msa1409410 | 0.811180 | 7.962503e-51 | -8.615850e-47 |
| Msa0573810 | Msa1415540 | 0.826086 | 3.290733e-54 | -8.615850e-47 |
| Msa0573810 | Msa1440630 | 0.822748 | 2.006168e-53 | -8.615850e-47 |
| Msa0573810 | Msa1452140 | 0.801450 | 8.951811e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573810 | MtrunA17_Chr8g0389881 | 96.791 | 374 | 12 | 0 | 1 | 374 | 1 | 374 | 0.0 | 737 |
| Msa0573810 | MtrunA17_Chr6g0486861 | 71.011 | 376 | 100 | 6 | 1 | 372 | 1 | 371 | 0.0 | 543 |
| Msa0573810 | MtrunA17_Chr4g0037211 | 36.522 | 345 | 183 | 8 | 35 | 358 | 57 | 386 | 4.46e-66 | 214 |
| Msa0573810 | MtrunA17_Chr5g0405691 | 33.594 | 384 | 188 | 6 | 28 | 358 | 62 | 431 | 1.26e-63 | 210 |
| Msa0573810 | MtrunA17_Chr6g0486881 | 47.845 | 232 | 98 | 6 | 19 | 247 | 9 | 220 | 5.97e-63 | 201 |
| Msa0573810 | MtrunA17_Chr8g0371621 | 30.748 | 361 | 154 | 7 | 8 | 290 | 42 | 384 | 1.55e-42 | 153 |
| Msa0573810 | MtrunA17_Chr8g0361491 | 94.545 | 55 | 3 | 0 | 49 | 103 | 1 | 55 | 1.13e-30 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573810 | AT4G15450.1 | 58.449 | 361 | 126 | 5 | 27 | 370 | 27 | 380 | 9.58e-149 | 426 |
| Msa0573810 | AT4G15450.2 | 57.064 | 361 | 125 | 6 | 27 | 370 | 27 | 374 | 2.97e-142 | 409 |
| Msa0573810 | AT3G21600.1 | 59.312 | 349 | 130 | 5 | 30 | 370 | 29 | 373 | 3.38e-139 | 401 |
| Msa0573810 | AT3G21600.2 | 60.182 | 329 | 119 | 5 | 30 | 350 | 29 | 353 | 4.94e-132 | 382 |
| Msa0573810 | AT3G21600.3 | 53.241 | 216 | 89 | 5 | 30 | 237 | 29 | 240 | 1.52e-74 | 232 |
| Msa0573810 | AT4G35985.1 | 34.988 | 403 | 202 | 8 | 18 | 373 | 52 | 441 | 4.06e-69 | 224 |
| Msa0573810 | AT3G51250.1 | 33.679 | 386 | 186 | 7 | 28 | 356 | 68 | 440 | 3.92e-67 | 219 |
| Msa0573810 | AT2G17840.1 | 33.732 | 418 | 194 | 13 | 13 | 372 | 54 | 446 | 4.94e-59 | 198 |
| Msa0573810 | AT4G35985.3 | 33.333 | 345 | 175 | 7 | 19 | 321 | 53 | 384 | 2.63e-52 | 178 |
| Msa0573810 | AT3G51250.2 | 31.481 | 324 | 152 | 7 | 28 | 294 | 68 | 378 | 1.50e-46 | 163 |
| Msa0573810 | AT2G17840.2 | 31.967 | 366 | 167 | 12 | 13 | 321 | 54 | 394 | 5.10e-44 | 157 |
| Msa0573810 | AT4G35985.2 | 32.301 | 226 | 111 | 5 | 18 | 201 | 52 | 277 | 2.30e-30 | 119 |
| Msa0573810 | AT3G21590.3 | 46.405 | 153 | 79 | 1 | 169 | 321 | 69 | 218 | 4.70e-29 | 112 |
| Msa0573810 | AT3G21590.1 | 43.411 | 129 | 70 | 1 | 169 | 297 | 69 | 194 | 5.53e-19 | 84.7 |
| Msa0573810 | AT3G21590.2 | 43.307 | 127 | 69 | 1 | 169 | 295 | 69 | 192 | 3.44e-18 | 82.8 |
Find 90 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATCTGCATGACTATTT+AGG | 0.176109 | 4_1:-77115028 | None:intergenic |
| ACAGGCTCATCTTTAGTTAA+AGG | 0.239941 | 4_1:-77114417 | None:intergenic |
| AACTTCTTGCCTAAGGTTCT+TGG | 0.255800 | 4_1:-77114247 | None:intergenic |
| ATCCTTAGGAATGCCTTTCC+TGG | 0.310349 | 4_1:-77115352 | None:intergenic |
| TAATGAGGAACTGGAGAAAA+AGG | 0.314849 | 4_1:-77114081 | None:intergenic |
| GTCTTCAATAGTACTACTTC+TGG | 0.322343 | 4_1:-77114214 | None:intergenic |
| TTAAGCAAATCTTTGCTTAG+TGG | 0.324336 | 4_1:+77115280 | Msa0573810:CDS |
| CAATCAAGTTTCTTTGTACT+TGG | 0.327867 | 4_1:+77116146 | Msa0573810:three_prime_UTR |
| TTTCTATCAAAGCTTATTGC+AGG | 0.332190 | 4_1:+77114657 | Msa0573810:CDS |
| TAGGAATGCCTTTCCTGGTT+GGG | 0.339467 | 4_1:-77115347 | None:intergenic |
| TTATGGAAGTTTGAGTTTGC+TGG | 0.358493 | 4_1:+77114530 | Msa0573810:CDS |
| ATTGATCTTGTTCTTCTTCG+AGG | 0.368375 | 4_1:-77115099 | None:intergenic |
| ACTTCTTGCCTAAGGTTCTT+GGG | 0.373704 | 4_1:-77114246 | None:intergenic |
| ACAGTAAAACAAAACCTTGT+TGG | 0.382635 | 4_1:-77114730 | None:intergenic |
| CATCTAGAATGGTCTCTAAC+AGG | 0.397131 | 4_1:+77115598 | Msa0573810:CDS |
| GCTGCCTGGAGAGGTGTTGT+TGG | 0.402177 | 4_1:+77115375 | Msa0573810:CDS |
| CCTCTCCAGGCAGCATCCTT+AGG | 0.416321 | 4_1:-77115366 | None:intergenic |
| CGGGCAACGAAAACAGATAA+TGG | 0.418561 | 4_1:-77114458 | None:intergenic |
| ACTAGCTCAAGGCCATTTCA+TGG | 0.421152 | 4_1:+77114326 | Msa0573810:CDS |
| GGTATGGAGGTTTCCATTGG+TGG | 0.421306 | 4_1:-77114192 | None:intergenic |
| AGTGGTGTTGGCATAGTTAG+TGG | 0.423570 | 4_1:+77115298 | Msa0573810:CDS |
| AGGATGCAAAGTTCATTTGA+TGG | 0.433365 | 4_1:+77114284 | Msa0573810:CDS |
| TGGAACAGTGATAGGCCCTT+TGG | 0.434912 | 4_1:+77115318 | Msa0573810:CDS |
| CTGGGTATGGAGGTTTCCAT+TGG | 0.435087 | 4_1:-77114195 | None:intergenic |
| CTTGCTACAGTTATAAAAGT+AGG | 0.435399 | 4_1:+77114378 | Msa0573810:CDS |
| GAAAGCAACAGCACCAAAGC+AGG | 0.436309 | 4_1:+77114133 | Msa0573810:five_prime_UTR |
| TGCTGAAGAAGCTGGATTGA+TGG | 0.437675 | 4_1:-77116067 | None:intergenic |
| TGGAAATGTTAATGAGGAAC+TGG | 0.450595 | 4_1:-77114090 | None:intergenic |
| CATTCTAGATGCAGCTTTCG+AGG | 0.450865 | 4_1:-77115586 | None:intergenic |
| AGCAACTCATATCCCTGCTT+TGG | 0.455292 | 4_1:-77114146 | None:intergenic |
| AAATCTTTGCTTAGTGGTGT+TGG | 0.456818 | 4_1:+77115286 | Msa0573810:CDS |
| TAGCAGCAAAAGCTTCCTTC+TGG | 0.462110 | 4_1:+77114052 | Msa0573810:five_prime_UTR |
| AACAGGTTTGGGGATAATGC+TGG | 0.462361 | 4_1:+77115967 | Msa0573810:intron |
| ATAGTTAGTGGAACAGTGAT+AGG | 0.465529 | 4_1:+77115310 | Msa0573810:CDS |
| TCCATAACAATCTTCTGAAA+AGG | 0.465570 | 4_1:-77114514 | None:intergenic |
| AAAGTTCATTTGATGGATGA+AGG | 0.470206 | 4_1:+77114291 | Msa0573810:CDS |
| AAGCTTATTGCAGGAGGGAC+TGG | 0.473481 | 4_1:+77114666 | Msa0573810:CDS |
| GTATCAGAACTTCTTGCCTA+AGG | 0.476536 | 4_1:-77114254 | None:intergenic |
| GACATGCAGCTAACACTGCT+TGG | 0.478430 | 4_1:+77116022 | Msa0573810:CDS |
| TCCAGCTTCTTCAGCATCCA+AGG | 0.486437 | 4_1:+77116074 | Msa0573810:CDS |
| TTAGGAATGCCTTTCCTGGT+TGG | 0.492672 | 4_1:-77115348 | None:intergenic |
| GAATGTGTTTAAGATAAGAA+AGG | 0.493342 | 4_1:+77116044 | Msa0573810:CDS |
| GAAGCCAACAACACCTCTCC+AGG | 0.495160 | 4_1:-77115379 | None:intergenic |
| TCTTCAATAGTACTACTTCT+GGG | 0.497590 | 4_1:-77114213 | None:intergenic |
| AAGAGGCTCACCATCTTTCA+CGG | 0.501387 | 4_1:-77114478 | None:intergenic |
| CTCGAAAGCTGCATCTAGAA+TGG | 0.505377 | 4_1:+77115587 | Msa0573810:CDS |
| TTTCATGGTAATCAAAACCT+TGG | 0.507129 | 4_1:+77114341 | Msa0573810:CDS |
| CCCTTGGATGCTGAAGAAGC+TGG | 0.507837 | 4_1:-77116075 | None:intergenic |
| ATGCAGGACCCAAGAACCTT+AGG | 0.511103 | 4_1:+77114238 | Msa0573810:CDS |
| ATCAAATGAACTTTGCATCC+TGG | 0.511507 | 4_1:-77114282 | None:intergenic |
| TTTACTTACTGACTGCATCA+AGG | 0.515962 | 4_1:-77115402 | None:intergenic |
| GGTTAAATCCCAACCAGGAA+AGG | 0.518740 | 4_1:+77115339 | Msa0573810:CDS |
| AATAGTACTACTTCTGGGTA+TGG | 0.522311 | 4_1:-77114208 | None:intergenic |
| CCTGGTTGGGATTTAACCAA+AGG | 0.523788 | 4_1:-77115334 | None:intergenic |
| CATGGTAATCAAAACCTTGG+AGG | 0.527008 | 4_1:+77114344 | Msa0573810:CDS |
| AAGTAGGAGAAGATCTTCAA+TGG | 0.531788 | 4_1:+77114394 | Msa0573810:CDS |
| TTGGAAGGAGTTTGCTCCGA+GGG | 0.533309 | 4_1:+77114617 | Msa0573810:CDS |
| TTACTTACTGACTGCATCAA+GGG | 0.538649 | 4_1:-77115401 | None:intergenic |
| CTATCAAAGCTTATTGCAGG+AGG | 0.540727 | 4_1:+77114660 | Msa0573810:CDS |
| ACAGGTTTGGGGATAATGCT+GGG | 0.544267 | 4_1:+77115968 | Msa0573810:intron |
| CTGGTTGGGATTTAACCAAA+GGG | 0.546559 | 4_1:-77115333 | None:intergenic |
| GCATTCCTAAGGATGCTGCC+TGG | 0.549502 | 4_1:+77115361 | Msa0573810:CDS |
| CCTAAGGATGCTGCCTGGAG+AGG | 0.558020 | 4_1:+77115366 | Msa0573810:CDS |
| GAGCATGTATTTGCAACTGC+GGG | 0.564766 | 4_1:+77116000 | Msa0573810:CDS |
| TGATTGTAATCTTCAACCCT+CGG | 0.567569 | 4_1:-77114633 | None:intergenic |
| AGTACTATTGAAGACTATGC+AGG | 0.580566 | 4_1:+77114222 | Msa0573810:CDS |
| TATCAAAGCTTATTGCAGGA+GGG | 0.582026 | 4_1:+77114661 | Msa0573810:CDS |
| AGAGGCTCACCATCTTTCAC+GGG | 0.590880 | 4_1:-77114477 | None:intergenic |
| AACCAGGAAAGGCATTCCTA+AGG | 0.592978 | 4_1:+77115350 | Msa0573810:CDS |
| GATGGTGAGCCTCTTAGCTA+CGG | 0.597136 | 4_1:+77114486 | Msa0573810:CDS |
| AGTACTACTTCTGGGTATGG+AGG | 0.603110 | 4_1:-77114205 | None:intergenic |
| TTCCATTGGTGGCATAACTG+TGG | 0.603164 | 4_1:-77114181 | None:intergenic |
| AAAGCAACAGCACCAAAGCA+GGG | 0.604722 | 4_1:+77114134 | Msa0573810:five_prime_UTR |
| TTCCACAGTTATGCCACCAA+TGG | 0.606555 | 4_1:+77114179 | Msa0573810:CDS |
| TTGGCCTAACAACAGGTTTG+GGG | 0.609199 | 4_1:+77115957 | Msa0573810:intron |
| CCTTTGGTTAAATCCCAACC+AGG | 0.610932 | 4_1:+77115334 | Msa0573810:CDS |
| AGGGACTGGTCAGATTGTGA+AGG | 0.612855 | 4_1:+77114680 | Msa0573810:CDS |
| CAGCAATGCTTACACCAACA+AGG | 0.615781 | 4_1:+77114716 | Msa0573810:CDS |
| AAGGTCAAGCCGTAGCTAAG+AGG | 0.626212 | 4_1:-77114495 | None:intergenic |
| GGGACTGGTCAGATTGTGAA+GGG | 0.629455 | 4_1:+77114681 | Msa0573810:CDS |
| TGGATGTGGAAATGTTAATG+AGG | 0.630523 | 4_1:-77114096 | None:intergenic |
| CCAGCTTCTTCAGCATCCAA+GGG | 0.644852 | 4_1:+77116075 | Msa0573810:CDS |
| AGTAAGAGCAACAAGAGTGT+CGG | 0.655465 | 4_1:+77115074 | Msa0573810:CDS |
| TTTAACTAAAGATGAGCCTG+TGG | 0.662996 | 4_1:+77114419 | Msa0573810:CDS |
| AGAGCATCTAGCTTCACCAC+AGG | 0.663366 | 4_1:-77114435 | None:intergenic |
| AGAGCATGTATTTGCAACTG+CGG | 0.663824 | 4_1:+77115999 | Msa0573810:CDS |
| TCTAGATGCAGCTTTCGAGG+TGG | 0.665928 | 4_1:-77115583 | None:intergenic |
| GAAGTTCTGATACAAATACC+AGG | 0.674691 | 4_1:+77114264 | Msa0573810:CDS |
| ATTGGAAGGAGTTTGCTCCG+AGG | 0.684090 | 4_1:+77114616 | Msa0573810:CDS |
| CAGGTTTGGGGATAATGCTG+GGG | 0.688874 | 4_1:+77115969 | Msa0573810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACTGTCAAAATATTAA+TGG | + | chr4_1:77114744-77114763 | Msa0573810:intron | 15.0% |
| !! | ATATTAACATATTGATAAAC+AGG | - | chr4_1:77115912-77115931 | None:intergenic | 15.0% |
| !! | TTAAATTAATTCATCATTCT+TGG | + | chr4_1:77115938-77115957 | Msa0573810:intron | 15.0% |
| !!! | TTTTACTGTCAAAATATTAA+TGG | + | chr4_1:77114744-77114763 | Msa0573810:intron | 15.0% |
| !! | ATATTAACATATTGATAAAC+AGG | - | chr4_1:77115912-77115931 | None:intergenic | 15.0% |
| !! | TTAAATTAATTCATCATTCT+TGG | + | chr4_1:77115938-77115957 | Msa0573810:intron | 15.0% |
| !!! | ACTAAATGATACTTTTTTCA+TGG | - | chr4_1:77114942-77114961 | None:intergenic | 20.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | - | chr4_1:77115762-77115781 | None:intergenic | 20.0% |
| !!! | ACTAAATGATACTTTTTTCA+TGG | - | chr4_1:77114942-77114961 | None:intergenic | 20.0% |
| !! | ATTTGGTTAATAGATATATC+AGG | - | chr4_1:77115762-77115781 | None:intergenic | 20.0% |
| ! | GTAACAAAAATGATCTTGAT+TGG | + | chr4_1:77114598-77114617 | Msa0573810:CDS | 25.0% |
| !! | ACAGTAAACTAAGAACTTTT+TGG | + | chr4_1:77114965-77114984 | Msa0573810:intron | 25.0% |
| !! | CAGTAAACTAAGAACTTTTT+GGG | + | chr4_1:77114966-77114985 | Msa0573810:intron | 25.0% |
| ! | AGATCAATAAAAACCTCAAA+CGG | + | chr4_1:77115114-77115133 | Msa0573810:CDS | 25.0% |
| ! | TAATTTATGTAGTGTACAAG+TGG | + | chr4_1:77115178-77115197 | Msa0573810:intron | 25.0% |
| !! | GAATGTGTTTAAGATAAGAA+AGG | + | chr4_1:77116044-77116063 | Msa0573810:CDS | 25.0% |
| ! | GTAACAAAAATGATCTTGAT+TGG | + | chr4_1:77114598-77114617 | Msa0573810:CDS | 25.0% |
| !! | ACAGTAAACTAAGAACTTTT+TGG | + | chr4_1:77114965-77114984 | Msa0573810:intron | 25.0% |
| !! | CAGTAAACTAAGAACTTTTT+GGG | + | chr4_1:77114966-77114985 | Msa0573810:intron | 25.0% |
| ! | AGATCAATAAAAACCTCAAA+CGG | + | chr4_1:77115114-77115133 | Msa0573810:CDS | 25.0% |
| ! | TAATTTATGTAGTGTACAAG+TGG | + | chr4_1:77115178-77115197 | Msa0573810:intron | 25.0% |
| !! | GAATGTGTTTAAGATAAGAA+AGG | + | chr4_1:77116044-77116063 | Msa0573810:CDS | 25.0% |
| TCTTCAATAGTACTACTTCT+GGG | - | chr4_1:77114216-77114235 | None:intergenic | 30.0% | |
| ! | AAAGTTCATTTGATGGATGA+AGG | + | chr4_1:77114291-77114310 | Msa0573810:CDS | 30.0% |
| !!! | AGGTTTTGATTACCATGAAA+TGG | - | chr4_1:77114341-77114360 | None:intergenic | 30.0% |
| TTTCATGGTAATCAAAACCT+TGG | + | chr4_1:77114341-77114360 | Msa0573810:CDS | 30.0% | |
| CTTGCTACAGTTATAAAAGT+AGG | + | chr4_1:77114378-77114397 | Msa0573810:CDS | 30.0% | |
| ! | ACCTTTTCAGAAGATTGTTA+TGG | + | chr4_1:77114513-77114532 | Msa0573810:CDS | 30.0% |
| ! | TCCATAACAATCTTCTGAAA+AGG | - | chr4_1:77114517-77114536 | None:intergenic | 30.0% |
| CAAAAATGATCTTGATTGGA+AGG | + | chr4_1:77114602-77114621 | Msa0573810:CDS | 30.0% | |
| TTTCTATCAAAGCTTATTGC+AGG | + | chr4_1:77114657-77114676 | Msa0573810:CDS | 30.0% | |
| ACAGTAAAACAAAACCTTGT+TGG | - | chr4_1:77114733-77114752 | None:intergenic | 30.0% | |
| !! | AAACTAAGAACTTTTTGGGA+TGG | + | chr4_1:77114970-77114989 | Msa0573810:intron | 30.0% |
| AAAAATCACCAGGTACAAAA+AGG | + | chr4_1:77114993-77115012 | Msa0573810:intron | 30.0% | |
| !! | TCATTTTTGTATACCGTTTG+AGG | - | chr4_1:77115130-77115149 | None:intergenic | 30.0% |
| TTAAGCAAATCTTTGCTTAG+TGG | + | chr4_1:77115280-77115299 | Msa0573810:CDS | 30.0% | |
| ACAACAACATTGAGCATAAA+GGG | - | chr4_1:77115460-77115479 | None:intergenic | 30.0% | |
| AACAACAACATTGAGCATAA+AGG | - | chr4_1:77115461-77115480 | None:intergenic | 30.0% | |
| ! | GTTTTTGACGTTTAAATTCG+TGG | + | chr4_1:77115707-77115726 | Msa0573810:intron | 30.0% |
| GGTTAATGAAGTTCAATAGA+TGG | + | chr4_1:77115728-77115747 | Msa0573810:intron | 30.0% | |
| GTTCAGAAGAAATTCTTGAA+TGG | + | chr4_1:77115856-77115875 | Msa0573810:intron | 30.0% | |
| CAATCAAGTTTCTTTGTACT+TGG | + | chr4_1:77116146-77116165 | Msa0573810:three_prime_UTR | 30.0% | |
| TTGGTTGTCAAAAAATGAAG+TGG | + | chr4_1:77116165-77116184 | Msa0573810:three_prime_UTR | 30.0% | |
| TCTTCAATAGTACTACTTCT+GGG | - | chr4_1:77114216-77114235 | None:intergenic | 30.0% | |
| ! | AAAGTTCATTTGATGGATGA+AGG | + | chr4_1:77114291-77114310 | Msa0573810:CDS | 30.0% |
| !!! | AGGTTTTGATTACCATGAAA+TGG | - | chr4_1:77114341-77114360 | None:intergenic | 30.0% |
| TTTCATGGTAATCAAAACCT+TGG | + | chr4_1:77114341-77114360 | Msa0573810:CDS | 30.0% | |
| CTTGCTACAGTTATAAAAGT+AGG | + | chr4_1:77114378-77114397 | Msa0573810:CDS | 30.0% | |
| ! | ACCTTTTCAGAAGATTGTTA+TGG | + | chr4_1:77114513-77114532 | Msa0573810:CDS | 30.0% |
| ! | TCCATAACAATCTTCTGAAA+AGG | - | chr4_1:77114517-77114536 | None:intergenic | 30.0% |
| CAAAAATGATCTTGATTGGA+AGG | + | chr4_1:77114602-77114621 | Msa0573810:CDS | 30.0% | |
| TTTCTATCAAAGCTTATTGC+AGG | + | chr4_1:77114657-77114676 | Msa0573810:CDS | 30.0% | |
| ACAGTAAAACAAAACCTTGT+TGG | - | chr4_1:77114733-77114752 | None:intergenic | 30.0% | |
| !! | AAACTAAGAACTTTTTGGGA+TGG | + | chr4_1:77114970-77114989 | Msa0573810:intron | 30.0% |
| AAAAATCACCAGGTACAAAA+AGG | + | chr4_1:77114993-77115012 | Msa0573810:intron | 30.0% | |
| !! | TCATTTTTGTATACCGTTTG+AGG | - | chr4_1:77115130-77115149 | None:intergenic | 30.0% |
| TTAAGCAAATCTTTGCTTAG+TGG | + | chr4_1:77115280-77115299 | Msa0573810:CDS | 30.0% | |
| ACAACAACATTGAGCATAAA+GGG | - | chr4_1:77115460-77115479 | None:intergenic | 30.0% | |
| AACAACAACATTGAGCATAA+AGG | - | chr4_1:77115461-77115480 | None:intergenic | 30.0% | |
| ! | GTTTTTGACGTTTAAATTCG+TGG | + | chr4_1:77115707-77115726 | Msa0573810:intron | 30.0% |
| GGTTAATGAAGTTCAATAGA+TGG | + | chr4_1:77115728-77115747 | Msa0573810:intron | 30.0% | |
| GTTCAGAAGAAATTCTTGAA+TGG | + | chr4_1:77115856-77115875 | Msa0573810:intron | 30.0% | |
| CAATCAAGTTTCTTTGTACT+TGG | + | chr4_1:77116146-77116165 | Msa0573810:three_prime_UTR | 30.0% | |
| TTGGTTGTCAAAAAATGAAG+TGG | + | chr4_1:77116165-77116184 | Msa0573810:three_prime_UTR | 30.0% | |
| TAATGAGGAACTGGAGAAAA+AGG | - | chr4_1:77114084-77114103 | None:intergenic | 35.0% | |
| TGGAAATGTTAATGAGGAAC+TGG | - | chr4_1:77114093-77114112 | None:intergenic | 35.0% | |
| TGGATGTGGAAATGTTAATG+AGG | - | chr4_1:77114099-77114118 | None:intergenic | 35.0% | |
| !!! | CTGTTGCTTTCTTTTTCTTC+GGG | - | chr4_1:77114124-77114143 | None:intergenic | 35.0% |
| !!! | GCTGTTGCTTTCTTTTTCTT+CGG | - | chr4_1:77114125-77114144 | None:intergenic | 35.0% |
| !!! | GATATGAGTTGCTGTTTTCA+TGG | + | chr4_1:77114156-77114175 | Msa0573810:exon | 35.0% |
| AATAGTACTACTTCTGGGTA+TGG | - | chr4_1:77114211-77114230 | None:intergenic | 35.0% | |
| GTCTTCAATAGTACTACTTC+TGG | - | chr4_1:77114217-77114236 | None:intergenic | 35.0% | |
| AGTACTATTGAAGACTATGC+AGG | + | chr4_1:77114222-77114241 | Msa0573810:CDS | 35.0% | |
| ! | GAAGTTCTGATACAAATACC+AGG | + | chr4_1:77114264-77114283 | Msa0573810:CDS | 35.0% |
| ATCAAATGAACTTTGCATCC+TGG | - | chr4_1:77114285-77114304 | None:intergenic | 35.0% | |
| AGGATGCAAAGTTCATTTGA+TGG | + | chr4_1:77114284-77114303 | Msa0573810:CDS | 35.0% | |
| ! | AAGAGAAACATTTTCCTCCA+AGG | - | chr4_1:77114361-77114380 | None:intergenic | 35.0% |
| AAGTAGGAGAAGATCTTCAA+TGG | + | chr4_1:77114394-77114413 | Msa0573810:CDS | 35.0% | |
| ACAGGCTCATCTTTAGTTAA+AGG | - | chr4_1:77114420-77114439 | None:intergenic | 35.0% | |
| TTTAACTAAAGATGAGCCTG+TGG | + | chr4_1:77114419-77114438 | Msa0573810:CDS | 35.0% | |
| ! | TTATGGAAGTTTGAGTTTGC+TGG | + | chr4_1:77114530-77114549 | Msa0573810:CDS | 35.0% |
| TGATTGTAATCTTCAACCCT+CGG | - | chr4_1:77114636-77114655 | None:intergenic | 35.0% | |
| TATCAAAGCTTATTGCAGGA+GGG | + | chr4_1:77114661-77114680 | Msa0573810:CDS | 35.0% | |
| TGTATGCATTTCGTAGACTT+GGG | - | chr4_1:77114856-77114875 | None:intergenic | 35.0% | |
| TTGTATGCATTTCGTAGACT+TGG | - | chr4_1:77114857-77114876 | None:intergenic | 35.0% | |
| TCTCATCTGCATGACTATTT+AGG | - | chr4_1:77115031-77115050 | None:intergenic | 35.0% | |
| AGTCATGCAGATGAGAAAAA+TGG | + | chr4_1:77115035-77115054 | Msa0573810:CDS | 35.0% | |
| ATTGATCTTGTTCTTCTTCG+AGG | - | chr4_1:77115102-77115121 | None:intergenic | 35.0% | |
| TGTATTTGCAATGTAGTGTG+AGG | + | chr4_1:77115233-77115252 | Msa0573810:intron | 35.0% | |
| ! | GCTTAACTTTTCTGTCATCT+TGG | - | chr4_1:77115266-77115285 | None:intergenic | 35.0% |
| AAATCTTTGCTTAGTGGTGT+TGG | + | chr4_1:77115286-77115305 | Msa0573810:CDS | 35.0% | |
| ATAGTTAGTGGAACAGTGAT+AGG | + | chr4_1:77115310-77115329 | Msa0573810:CDS | 35.0% | |
| ! | TTACTTACTGACTGCATCAA+GGG | - | chr4_1:77115404-77115423 | None:intergenic | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | - | chr4_1:77115405-77115424 | None:intergenic | 35.0% |
| TATGTGTATGTAGCTGGAAT+TGG | - | chr4_1:77115664-77115683 | None:intergenic | 35.0% | |
| CATACTTATGTGTATGTAGC+TGG | - | chr4_1:77115670-77115689 | None:intergenic | 35.0% | |
| ! | CGTCAAAAACTACGATTTTC+AGG | - | chr4_1:77115697-77115716 | None:intergenic | 35.0% |
| ACACGCAGTTAATGAACATT+TGG | - | chr4_1:77115779-77115798 | None:intergenic | 35.0% | |
| TAATGAGGAACTGGAGAAAA+AGG | - | chr4_1:77114084-77114103 | None:intergenic | 35.0% | |
| TGGAAATGTTAATGAGGAAC+TGG | - | chr4_1:77114093-77114112 | None:intergenic | 35.0% | |
| TGGATGTGGAAATGTTAATG+AGG | - | chr4_1:77114099-77114118 | None:intergenic | 35.0% | |
| !!! | CTGTTGCTTTCTTTTTCTTC+GGG | - | chr4_1:77114124-77114143 | None:intergenic | 35.0% |
| !!! | GCTGTTGCTTTCTTTTTCTT+CGG | - | chr4_1:77114125-77114144 | None:intergenic | 35.0% |
| !!! | GATATGAGTTGCTGTTTTCA+TGG | + | chr4_1:77114156-77114175 | Msa0573810:exon | 35.0% |
| AATAGTACTACTTCTGGGTA+TGG | - | chr4_1:77114211-77114230 | None:intergenic | 35.0% | |
| GTCTTCAATAGTACTACTTC+TGG | - | chr4_1:77114217-77114236 | None:intergenic | 35.0% | |
| AGTACTATTGAAGACTATGC+AGG | + | chr4_1:77114222-77114241 | Msa0573810:CDS | 35.0% | |
| ! | GAAGTTCTGATACAAATACC+AGG | + | chr4_1:77114264-77114283 | Msa0573810:CDS | 35.0% |
| ATCAAATGAACTTTGCATCC+TGG | - | chr4_1:77114285-77114304 | None:intergenic | 35.0% | |
| AGGATGCAAAGTTCATTTGA+TGG | + | chr4_1:77114284-77114303 | Msa0573810:CDS | 35.0% | |
| ! | AAGAGAAACATTTTCCTCCA+AGG | - | chr4_1:77114361-77114380 | None:intergenic | 35.0% |
| AAGTAGGAGAAGATCTTCAA+TGG | + | chr4_1:77114394-77114413 | Msa0573810:CDS | 35.0% | |
| ACAGGCTCATCTTTAGTTAA+AGG | - | chr4_1:77114420-77114439 | None:intergenic | 35.0% | |
| TTTAACTAAAGATGAGCCTG+TGG | + | chr4_1:77114419-77114438 | Msa0573810:CDS | 35.0% | |
| ! | TTATGGAAGTTTGAGTTTGC+TGG | + | chr4_1:77114530-77114549 | Msa0573810:CDS | 35.0% |
| TGATTGTAATCTTCAACCCT+CGG | - | chr4_1:77114636-77114655 | None:intergenic | 35.0% | |
| TATCAAAGCTTATTGCAGGA+GGG | + | chr4_1:77114661-77114680 | Msa0573810:CDS | 35.0% | |
| TGTATGCATTTCGTAGACTT+GGG | - | chr4_1:77114856-77114875 | None:intergenic | 35.0% | |
| TTGTATGCATTTCGTAGACT+TGG | - | chr4_1:77114857-77114876 | None:intergenic | 35.0% | |
| TCTCATCTGCATGACTATTT+AGG | - | chr4_1:77115031-77115050 | None:intergenic | 35.0% | |
| AGTCATGCAGATGAGAAAAA+TGG | + | chr4_1:77115035-77115054 | Msa0573810:CDS | 35.0% | |
| ATTGATCTTGTTCTTCTTCG+AGG | - | chr4_1:77115102-77115121 | None:intergenic | 35.0% | |
| TGTATTTGCAATGTAGTGTG+AGG | + | chr4_1:77115233-77115252 | Msa0573810:intron | 35.0% | |
| ! | GCTTAACTTTTCTGTCATCT+TGG | - | chr4_1:77115266-77115285 | None:intergenic | 35.0% |
| AAATCTTTGCTTAGTGGTGT+TGG | + | chr4_1:77115286-77115305 | Msa0573810:CDS | 35.0% | |
| ATAGTTAGTGGAACAGTGAT+AGG | + | chr4_1:77115310-77115329 | Msa0573810:CDS | 35.0% | |
| ! | TTACTTACTGACTGCATCAA+GGG | - | chr4_1:77115404-77115423 | None:intergenic | 35.0% |
| ! | TTTACTTACTGACTGCATCA+AGG | - | chr4_1:77115405-77115424 | None:intergenic | 35.0% |
| TATGTGTATGTAGCTGGAAT+TGG | - | chr4_1:77115664-77115683 | None:intergenic | 35.0% | |
| CATACTTATGTGTATGTAGC+TGG | - | chr4_1:77115670-77115689 | None:intergenic | 35.0% | |
| ! | CGTCAAAAACTACGATTTTC+AGG | - | chr4_1:77115697-77115716 | None:intergenic | 35.0% |
| ACACGCAGTTAATGAACATT+TGG | - | chr4_1:77115779-77115798 | None:intergenic | 35.0% | |
| AGAAAAAGGTAAAGGCCAGA+AGG | - | chr4_1:77114070-77114089 | None:intergenic | 40.0% | |
| GGAACTGGAGAAAAAGGTAA+AGG | - | chr4_1:77114078-77114097 | None:intergenic | 40.0% | |
| ACTTCTTGCCTAAGGTTCTT+GGG | - | chr4_1:77114249-77114268 | None:intergenic | 40.0% | |
| AACTTCTTGCCTAAGGTTCT+TGG | - | chr4_1:77114250-77114269 | None:intergenic | 40.0% | |
| GTATCAGAACTTCTTGCCTA+AGG | - | chr4_1:77114257-77114276 | None:intergenic | 40.0% | |
| ! | GAAGCTTTTGAACTAGCTCA+AGG | + | chr4_1:77114315-77114334 | Msa0573810:CDS | 40.0% |
| CATGGTAATCAAAACCTTGG+AGG | + | chr4_1:77114344-77114363 | Msa0573810:CDS | 40.0% | |
| !!! | AAAGAGCACTCTTGCTTTTC+TGG | + | chr4_1:77114564-77114583 | Msa0573810:CDS | 40.0% |
| CTATCAAAGCTTATTGCAGG+AGG | + | chr4_1:77114660-77114679 | Msa0573810:CDS | 40.0% | |
| ! | TTTGGGATGGAAAAATCACC+AGG | + | chr4_1:77114983-77115002 | Msa0573810:intron | 40.0% |
| AATCACCAGGTACAAAAAGG+AGG | + | chr4_1:77114996-77115015 | Msa0573810:intron | 40.0% | |
| ! | TTTCTCCTCCTTTTTGTACC+TGG | - | chr4_1:77115004-77115023 | None:intergenic | 40.0% |
| ! | AGATGAGAAAAATGGTGCTG+TGG | + | chr4_1:77115043-77115062 | Msa0573810:CDS | 40.0% |
| ! | AGTAAGAGCAACAAGAGTGT+CGG | + | chr4_1:77115074-77115093 | Msa0573810:CDS | 40.0% |
| TGTAGTGTACAAGTGGATGA+TGG | + | chr4_1:77115185-77115204 | Msa0573810:intron | 40.0% | |
| CTGGTTGGGATTTAACCAAA+GGG | - | chr4_1:77115336-77115355 | None:intergenic | 40.0% | |
| ! | CATCTAGAATGGTCTCTAAC+AGG | + | chr4_1:77115598-77115617 | Msa0573810:CDS | 40.0% |
| GAATGGTCTCTAACAGGTAA+AGG | + | chr4_1:77115604-77115623 | Msa0573810:intron | 40.0% | |
| AGTAAGTAGAGTCAGCTGTT+TGG | - | chr4_1:77115641-77115660 | None:intergenic | 40.0% | |
| ATCATTCTTGGCCTAACAAC+AGG | + | chr4_1:77115950-77115969 | Msa0573810:intron | 40.0% | |
| TTATCCCCAAACCTGTTGTT+AGG | - | chr4_1:77115964-77115983 | None:intergenic | 40.0% | |
| AGAGCATGTATTTGCAACTG+CGG | + | chr4_1:77115999-77116018 | Msa0573810:CDS | 40.0% | |
| AGAAAAAGGTAAAGGCCAGA+AGG | - | chr4_1:77114070-77114089 | None:intergenic | 40.0% | |
| GGAACTGGAGAAAAAGGTAA+AGG | - | chr4_1:77114078-77114097 | None:intergenic | 40.0% | |
| ACTTCTTGCCTAAGGTTCTT+GGG | - | chr4_1:77114249-77114268 | None:intergenic | 40.0% | |
| AACTTCTTGCCTAAGGTTCT+TGG | - | chr4_1:77114250-77114269 | None:intergenic | 40.0% | |
| GTATCAGAACTTCTTGCCTA+AGG | - | chr4_1:77114257-77114276 | None:intergenic | 40.0% | |
| ! | GAAGCTTTTGAACTAGCTCA+AGG | + | chr4_1:77114315-77114334 | Msa0573810:CDS | 40.0% |
| CATGGTAATCAAAACCTTGG+AGG | + | chr4_1:77114344-77114363 | Msa0573810:CDS | 40.0% | |
| !!! | AAAGAGCACTCTTGCTTTTC+TGG | + | chr4_1:77114564-77114583 | Msa0573810:CDS | 40.0% |
| CTATCAAAGCTTATTGCAGG+AGG | + | chr4_1:77114660-77114679 | Msa0573810:CDS | 40.0% | |
| ! | TTTGGGATGGAAAAATCACC+AGG | + | chr4_1:77114983-77115002 | Msa0573810:intron | 40.0% |
| AATCACCAGGTACAAAAAGG+AGG | + | chr4_1:77114996-77115015 | Msa0573810:intron | 40.0% | |
| ! | TTTCTCCTCCTTTTTGTACC+TGG | - | chr4_1:77115004-77115023 | None:intergenic | 40.0% |
| ! | AGATGAGAAAAATGGTGCTG+TGG | + | chr4_1:77115043-77115062 | Msa0573810:CDS | 40.0% |
| ! | AGTAAGAGCAACAAGAGTGT+CGG | + | chr4_1:77115074-77115093 | Msa0573810:CDS | 40.0% |
| TGTAGTGTACAAGTGGATGA+TGG | + | chr4_1:77115185-77115204 | Msa0573810:intron | 40.0% | |
| CTGGTTGGGATTTAACCAAA+GGG | - | chr4_1:77115336-77115355 | None:intergenic | 40.0% | |
| ! | CATCTAGAATGGTCTCTAAC+AGG | + | chr4_1:77115598-77115617 | Msa0573810:CDS | 40.0% |
| GAATGGTCTCTAACAGGTAA+AGG | + | chr4_1:77115604-77115623 | Msa0573810:intron | 40.0% | |
| AGTAAGTAGAGTCAGCTGTT+TGG | - | chr4_1:77115641-77115660 | None:intergenic | 40.0% | |
| ATCATTCTTGGCCTAACAAC+AGG | + | chr4_1:77115950-77115969 | Msa0573810:intron | 40.0% | |
| TTATCCCCAAACCTGTTGTT+AGG | - | chr4_1:77115964-77115983 | None:intergenic | 40.0% | |
| AGAGCATGTATTTGCAACTG+CGG | + | chr4_1:77115999-77116018 | Msa0573810:CDS | 40.0% | |
| ! | GAAGGAAGCTTTTGCTGCTA+TGG | - | chr4_1:77114052-77114071 | None:intergenic | 45.0% |
| TAGCAGCAAAAGCTTCCTTC+TGG | + | chr4_1:77114052-77114071 | Msa0573810:five_prime_UTR | 45.0% | |
| ! | TTTTTCTTCGGGAGTGGATG+TGG | - | chr4_1:77114113-77114132 | None:intergenic | 45.0% |
| ! | GCTTTCTTTTTCTTCGGGAG+TGG | - | chr4_1:77114119-77114138 | None:intergenic | 45.0% |
| AAAGCAACAGCACCAAAGCA+GGG | + | chr4_1:77114134-77114153 | Msa0573810:five_prime_UTR | 45.0% | |
| AGCAACTCATATCCCTGCTT+TGG | - | chr4_1:77114149-77114168 | None:intergenic | 45.0% | |
| TTCCACAGTTATGCCACCAA+TGG | + | chr4_1:77114179-77114198 | Msa0573810:CDS | 45.0% | |
| ! | TTCCATTGGTGGCATAACTG+TGG | - | chr4_1:77114184-77114203 | None:intergenic | 45.0% |
| AGTACTACTTCTGGGTATGG+AGG | - | chr4_1:77114208-77114227 | None:intergenic | 45.0% | |
| ACTAGCTCAAGGCCATTTCA+TGG | + | chr4_1:77114326-77114345 | Msa0573810:CDS | 45.0% | |
| CGGGCAACGAAAACAGATAA+TGG | - | chr4_1:77114461-77114480 | None:intergenic | 45.0% | |
| ! | TTTTCGTTGCCCGTGAAAGA+TGG | + | chr4_1:77114468-77114487 | Msa0573810:CDS | 45.0% |
| AAGAGGCTCACCATCTTTCA+CGG | - | chr4_1:77114481-77114500 | None:intergenic | 45.0% | |
| CAGCAATGCTTACACCAACA+AGG | + | chr4_1:77114716-77114735 | Msa0573810:CDS | 45.0% | |
| ! | ACAATGAGAGTGTGTGACAC+TGG | + | chr4_1:77114873-77114892 | Msa0573810:intron | 45.0% |
| !! | AGAAAAATGGTGCTGTGGTC+AGG | + | chr4_1:77115048-77115067 | Msa0573810:CDS | 45.0% |
| !! | GAAAAATGGTGCTGTGGTCA+GGG | + | chr4_1:77115049-77115068 | Msa0573810:CDS | 45.0% |
| !! | AGTGGTGTTGGCATAGTTAG+TGG | + | chr4_1:77115298-77115317 | Msa0573810:CDS | 45.0% |
| CCTGGTTGGGATTTAACCAA+AGG | - | chr4_1:77115337-77115356 | None:intergenic | 45.0% | |
| CCTTTGGTTAAATCCCAACC+AGG | + | chr4_1:77115334-77115353 | Msa0573810:CDS | 45.0% | |
| GGTTAAATCCCAACCAGGAA+AGG | + | chr4_1:77115339-77115358 | Msa0573810:CDS | 45.0% | |
| TAGGAATGCCTTTCCTGGTT+GGG | - | chr4_1:77115350-77115369 | None:intergenic | 45.0% | |
| TTAGGAATGCCTTTCCTGGT+TGG | - | chr4_1:77115351-77115370 | None:intergenic | 45.0% | |
| !! | AACCAGGAAAGGCATTCCTA+AGG | + | chr4_1:77115350-77115369 | Msa0573810:CDS | 45.0% |
| ATCCTTAGGAATGCCTTTCC+TGG | - | chr4_1:77115355-77115374 | None:intergenic | 45.0% | |
| CATTCTAGATGCAGCTTTCG+AGG | - | chr4_1:77115589-77115608 | None:intergenic | 45.0% | |
| CTCGAAAGCTGCATCTAGAA+TGG | + | chr4_1:77115587-77115606 | Msa0573810:CDS | 45.0% | |
| TCTTGGCCTAACAACAGGTT+TGG | + | chr4_1:77115955-77115974 | Msa0573810:intron | 45.0% | |
| CTTGGCCTAACAACAGGTTT+GGG | + | chr4_1:77115956-77115975 | Msa0573810:intron | 45.0% | |
| TTGGCCTAACAACAGGTTTG+GGG | + | chr4_1:77115957-77115976 | Msa0573810:intron | 45.0% | |
| AACAGGTTTGGGGATAATGC+TGG | + | chr4_1:77115967-77115986 | Msa0573810:intron | 45.0% | |
| ACAGGTTTGGGGATAATGCT+GGG | + | chr4_1:77115968-77115987 | Msa0573810:intron | 45.0% | |
| GAGCATGTATTTGCAACTGC+GGG | + | chr4_1:77116000-77116019 | Msa0573810:CDS | 45.0% | |
| TGCTGAAGAAGCTGGATTGA+TGG | - | chr4_1:77116070-77116089 | None:intergenic | 45.0% | |
| !! | AGCATTTTTCAGTACGCCCT+TGG | - | chr4_1:77116094-77116113 | None:intergenic | 45.0% |
| ! | GAAGGAAGCTTTTGCTGCTA+TGG | - | chr4_1:77114052-77114071 | None:intergenic | 45.0% |
| TAGCAGCAAAAGCTTCCTTC+TGG | + | chr4_1:77114052-77114071 | Msa0573810:five_prime_UTR | 45.0% | |
| ! | TTTTTCTTCGGGAGTGGATG+TGG | - | chr4_1:77114113-77114132 | None:intergenic | 45.0% |
| ! | GCTTTCTTTTTCTTCGGGAG+TGG | - | chr4_1:77114119-77114138 | None:intergenic | 45.0% |
| AAAGCAACAGCACCAAAGCA+GGG | + | chr4_1:77114134-77114153 | Msa0573810:five_prime_UTR | 45.0% | |
| AGCAACTCATATCCCTGCTT+TGG | - | chr4_1:77114149-77114168 | None:intergenic | 45.0% | |
| TTCCACAGTTATGCCACCAA+TGG | + | chr4_1:77114179-77114198 | Msa0573810:CDS | 45.0% | |
| ! | TTCCATTGGTGGCATAACTG+TGG | - | chr4_1:77114184-77114203 | None:intergenic | 45.0% |
| AGTACTACTTCTGGGTATGG+AGG | - | chr4_1:77114208-77114227 | None:intergenic | 45.0% | |
| ACTAGCTCAAGGCCATTTCA+TGG | + | chr4_1:77114326-77114345 | Msa0573810:CDS | 45.0% | |
| CGGGCAACGAAAACAGATAA+TGG | - | chr4_1:77114461-77114480 | None:intergenic | 45.0% | |
| ! | TTTTCGTTGCCCGTGAAAGA+TGG | + | chr4_1:77114468-77114487 | Msa0573810:CDS | 45.0% |
| AAGAGGCTCACCATCTTTCA+CGG | - | chr4_1:77114481-77114500 | None:intergenic | 45.0% | |
| CAGCAATGCTTACACCAACA+AGG | + | chr4_1:77114716-77114735 | Msa0573810:CDS | 45.0% | |
| ! | ACAATGAGAGTGTGTGACAC+TGG | + | chr4_1:77114873-77114892 | Msa0573810:intron | 45.0% |
| !! | AGAAAAATGGTGCTGTGGTC+AGG | + | chr4_1:77115048-77115067 | Msa0573810:CDS | 45.0% |
| !! | GAAAAATGGTGCTGTGGTCA+GGG | + | chr4_1:77115049-77115068 | Msa0573810:CDS | 45.0% |
| !! | AGTGGTGTTGGCATAGTTAG+TGG | + | chr4_1:77115298-77115317 | Msa0573810:CDS | 45.0% |
| CCTGGTTGGGATTTAACCAA+AGG | - | chr4_1:77115337-77115356 | None:intergenic | 45.0% | |
| CCTTTGGTTAAATCCCAACC+AGG | + | chr4_1:77115334-77115353 | Msa0573810:CDS | 45.0% | |
| GGTTAAATCCCAACCAGGAA+AGG | + | chr4_1:77115339-77115358 | Msa0573810:CDS | 45.0% | |
| TAGGAATGCCTTTCCTGGTT+GGG | - | chr4_1:77115350-77115369 | None:intergenic | 45.0% | |
| TTAGGAATGCCTTTCCTGGT+TGG | - | chr4_1:77115351-77115370 | None:intergenic | 45.0% | |
| !! | AACCAGGAAAGGCATTCCTA+AGG | + | chr4_1:77115350-77115369 | Msa0573810:CDS | 45.0% |
| ATCCTTAGGAATGCCTTTCC+TGG | - | chr4_1:77115355-77115374 | None:intergenic | 45.0% | |
| CATTCTAGATGCAGCTTTCG+AGG | - | chr4_1:77115589-77115608 | None:intergenic | 45.0% | |
| CTCGAAAGCTGCATCTAGAA+TGG | + | chr4_1:77115587-77115606 | Msa0573810:CDS | 45.0% | |
| TCTTGGCCTAACAACAGGTT+TGG | + | chr4_1:77115955-77115974 | Msa0573810:intron | 45.0% | |
| CTTGGCCTAACAACAGGTTT+GGG | + | chr4_1:77115956-77115975 | Msa0573810:intron | 45.0% | |
| TTGGCCTAACAACAGGTTTG+GGG | + | chr4_1:77115957-77115976 | Msa0573810:intron | 45.0% | |
| AACAGGTTTGGGGATAATGC+TGG | + | chr4_1:77115967-77115986 | Msa0573810:intron | 45.0% | |
| ACAGGTTTGGGGATAATGCT+GGG | + | chr4_1:77115968-77115987 | Msa0573810:intron | 45.0% | |
| GAGCATGTATTTGCAACTGC+GGG | + | chr4_1:77116000-77116019 | Msa0573810:CDS | 45.0% | |
| TGCTGAAGAAGCTGGATTGA+TGG | - | chr4_1:77116070-77116089 | None:intergenic | 45.0% | |
| !! | AGCATTTTTCAGTACGCCCT+TGG | - | chr4_1:77116094-77116113 | None:intergenic | 45.0% |
| GAAAGCAACAGCACCAAAGC+AGG | + | chr4_1:77114133-77114152 | Msa0573810:five_prime_UTR | 50.0% | |
| GGTATGGAGGTTTCCATTGG+TGG | - | chr4_1:77114195-77114214 | None:intergenic | 50.0% | |
| CTGGGTATGGAGGTTTCCAT+TGG | - | chr4_1:77114198-77114217 | None:intergenic | 50.0% | |
| ATGCAGGACCCAAGAACCTT+AGG | + | chr4_1:77114238-77114257 | Msa0573810:CDS | 50.0% | |
| ! | AGAGCATCTAGCTTCACCAC+AGG | - | chr4_1:77114438-77114457 | None:intergenic | 50.0% |
| AGAGGCTCACCATCTTTCAC+GGG | - | chr4_1:77114480-77114499 | None:intergenic | 50.0% | |
| GATGGTGAGCCTCTTAGCTA+CGG | + | chr4_1:77114486-77114505 | Msa0573810:CDS | 50.0% | |
| AAGGTCAAGCCGTAGCTAAG+AGG | - | chr4_1:77114498-77114517 | None:intergenic | 50.0% | |
| ! | ATTGGAAGGAGTTTGCTCCG+AGG | + | chr4_1:77114616-77114635 | Msa0573810:CDS | 50.0% |
| ! | TTGGAAGGAGTTTGCTCCGA+GGG | + | chr4_1:77114617-77114636 | Msa0573810:CDS | 50.0% |
| AAGCTTATTGCAGGAGGGAC+TGG | + | chr4_1:77114666-77114685 | Msa0573810:CDS | 50.0% | |
| !! | AGGGACTGGTCAGATTGTGA+AGG | + | chr4_1:77114680-77114699 | Msa0573810:CDS | 50.0% |
| !! | GGGACTGGTCAGATTGTGAA+GGG | + | chr4_1:77114681-77114700 | Msa0573810:CDS | 50.0% |
| TGGAACAGTGATAGGCCCTT+TGG | + | chr4_1:77115318-77115337 | Msa0573810:CDS | 50.0% | |
| TCTAGATGCAGCTTTCGAGG+TGG | - | chr4_1:77115586-77115605 | None:intergenic | 50.0% | |
| GGTCTCTAACAGGTAAAGGC+TGG | + | chr4_1:77115608-77115627 | Msa0573810:intron | 50.0% | |
| CAGGTTTGGGGATAATGCTG+GGG | + | chr4_1:77115969-77115988 | Msa0573810:intron | 50.0% | |
| GACATGCAGCTAACACTGCT+TGG | + | chr4_1:77116022-77116041 | Msa0573810:CDS | 50.0% | |
| TCCAGCTTCTTCAGCATCCA+AGG | + | chr4_1:77116074-77116093 | Msa0573810:CDS | 50.0% | |
| CCAGCTTCTTCAGCATCCAA+GGG | + | chr4_1:77116075-77116094 | Msa0573810:CDS | 50.0% | |
| GAAAGCAACAGCACCAAAGC+AGG | + | chr4_1:77114133-77114152 | Msa0573810:five_prime_UTR | 50.0% | |
| GGTATGGAGGTTTCCATTGG+TGG | - | chr4_1:77114195-77114214 | None:intergenic | 50.0% | |
| CTGGGTATGGAGGTTTCCAT+TGG | - | chr4_1:77114198-77114217 | None:intergenic | 50.0% | |
| ATGCAGGACCCAAGAACCTT+AGG | + | chr4_1:77114238-77114257 | Msa0573810:CDS | 50.0% | |
| ! | AGAGCATCTAGCTTCACCAC+AGG | - | chr4_1:77114438-77114457 | None:intergenic | 50.0% |
| AGAGGCTCACCATCTTTCAC+GGG | - | chr4_1:77114480-77114499 | None:intergenic | 50.0% | |
| GATGGTGAGCCTCTTAGCTA+CGG | + | chr4_1:77114486-77114505 | Msa0573810:CDS | 50.0% | |
| AAGGTCAAGCCGTAGCTAAG+AGG | - | chr4_1:77114498-77114517 | None:intergenic | 50.0% | |
| ! | ATTGGAAGGAGTTTGCTCCG+AGG | + | chr4_1:77114616-77114635 | Msa0573810:CDS | 50.0% |
| ! | TTGGAAGGAGTTTGCTCCGA+GGG | + | chr4_1:77114617-77114636 | Msa0573810:CDS | 50.0% |
| AAGCTTATTGCAGGAGGGAC+TGG | + | chr4_1:77114666-77114685 | Msa0573810:CDS | 50.0% | |
| !! | AGGGACTGGTCAGATTGTGA+AGG | + | chr4_1:77114680-77114699 | Msa0573810:CDS | 50.0% |
| !! | GGGACTGGTCAGATTGTGAA+GGG | + | chr4_1:77114681-77114700 | Msa0573810:CDS | 50.0% |
| TGGAACAGTGATAGGCCCTT+TGG | + | chr4_1:77115318-77115337 | Msa0573810:CDS | 50.0% | |
| TCTAGATGCAGCTTTCGAGG+TGG | - | chr4_1:77115586-77115605 | None:intergenic | 50.0% | |
| GGTCTCTAACAGGTAAAGGC+TGG | + | chr4_1:77115608-77115627 | Msa0573810:intron | 50.0% | |
| CAGGTTTGGGGATAATGCTG+GGG | + | chr4_1:77115969-77115988 | Msa0573810:intron | 50.0% | |
| GACATGCAGCTAACACTGCT+TGG | + | chr4_1:77116022-77116041 | Msa0573810:CDS | 50.0% | |
| TCCAGCTTCTTCAGCATCCA+AGG | + | chr4_1:77116074-77116093 | Msa0573810:CDS | 50.0% | |
| CCAGCTTCTTCAGCATCCAA+GGG | + | chr4_1:77116075-77116094 | Msa0573810:CDS | 50.0% | |
| GCATTCCTAAGGATGCTGCC+TGG | + | chr4_1:77115361-77115380 | Msa0573810:CDS | 55.0% | |
| GAAGCCAACAACACCTCTCC+AGG | - | chr4_1:77115382-77115401 | None:intergenic | 55.0% | |
| CCCTTGGATGCTGAAGAAGC+TGG | - | chr4_1:77116078-77116097 | None:intergenic | 55.0% | |
| GCATTCCTAAGGATGCTGCC+TGG | + | chr4_1:77115361-77115380 | Msa0573810:CDS | 55.0% | |
| GAAGCCAACAACACCTCTCC+AGG | - | chr4_1:77115382-77115401 | None:intergenic | 55.0% | |
| CCCTTGGATGCTGAAGAAGC+TGG | - | chr4_1:77116078-77116097 | None:intergenic | 55.0% | |
| CCTCTCCAGGCAGCATCCTT+AGG | - | chr4_1:77115369-77115388 | None:intergenic | 60.0% | |
| CCTAAGGATGCTGCCTGGAG+AGG | + | chr4_1:77115366-77115385 | Msa0573810:CDS | 60.0% | |
| !! | GCTGCCTGGAGAGGTGTTGT+TGG | + | chr4_1:77115375-77115394 | Msa0573810:CDS | 60.0% |
| CCTCTCCAGGCAGCATCCTT+AGG | - | chr4_1:77115369-77115388 | None:intergenic | 60.0% | |
| CCTAAGGATGCTGCCTGGAG+AGG | + | chr4_1:77115366-77115385 | Msa0573810:CDS | 60.0% | |
| !! | GCTGCCTGGAGAGGTGTTGT+TGG | + | chr4_1:77115375-77115394 | Msa0573810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 77114041 | 77116228 | 77114041 | ID=Msa0573810;Name=Msa0573810 |
| chr4_1 | mRNA | 77114041 | 77116228 | 77114041 | ID=Msa0573810-mRNA-1;Parent=Msa0573810;Name=Msa0573810-mRNA-1;_AED=0.34;_eAED=0.34;_QI=118|1|1|1|1|1|5|94|374 |
| chr4_1 | exon | 77114041 | 77114737 | 77114041 | ID=Msa0573810-mRNA-1:exon:27136;Parent=Msa0573810-mRNA-1 |
| chr4_1 | exon | 77115005 | 77115135 | 77115005 | ID=Msa0573810-mRNA-1:exon:27137;Parent=Msa0573810-mRNA-1 |
| chr4_1 | exon | 77115249 | 77115415 | 77115249 | ID=Msa0573810-mRNA-1:exon:27138;Parent=Msa0573810-mRNA-1 |
| chr4_1 | exon | 77115535 | 77115619 | 77115535 | ID=Msa0573810-mRNA-1:exon:27139;Parent=Msa0573810-mRNA-1 |
| chr4_1 | exon | 77115972 | 77116228 | 77115972 | ID=Msa0573810-mRNA-1:exon:27140;Parent=Msa0573810-mRNA-1 |
| chr4_1 | five_prime_UTR | 77114041 | 77114158 | 77114041 | ID=Msa0573810-mRNA-1:five_prime_utr;Parent=Msa0573810-mRNA-1 |
| chr4_1 | CDS | 77114159 | 77114737 | 77114159 | ID=Msa0573810-mRNA-1:cds;Parent=Msa0573810-mRNA-1 |
| chr4_1 | CDS | 77115005 | 77115135 | 77115005 | ID=Msa0573810-mRNA-1:cds;Parent=Msa0573810-mRNA-1 |
| chr4_1 | CDS | 77115249 | 77115415 | 77115249 | ID=Msa0573810-mRNA-1:cds;Parent=Msa0573810-mRNA-1 |
| chr4_1 | CDS | 77115535 | 77115619 | 77115535 | ID=Msa0573810-mRNA-1:cds;Parent=Msa0573810-mRNA-1 |
| chr4_1 | CDS | 77115972 | 77116134 | 77115972 | ID=Msa0573810-mRNA-1:cds;Parent=Msa0573810-mRNA-1 |
| chr4_1 | three_prime_UTR | 77116135 | 77116228 | 77116135 | ID=Msa0573810-mRNA-1:three_prime_utr;Parent=Msa0573810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
