AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168470 MtrunA17_Chr1g0184951 97.406 347 9 0 1 347 1 347 0.0 704
Msa0168470 MtrunA17_Chr1g0188121 76.286 350 70 3 1 347 1 340 0.0 520
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168470 AT3G63410.1 78.797 349 61 5 1 347 1 338 0.0 516

Find 94 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCCACGATACCATTT+TGG 0.111746 1_4:+51085975 None:intergenic
AACCAAACCCATTTCCATTT+TGG 0.136694 1_4:+51087294 None:intergenic
TCGATATACTCTTCTTCTTT+AGG 0.193738 1_4:+51086047 None:intergenic
CAAGAATCAATGCTAAAATT+AGG 0.196925 1_4:-51087226 Msa0168470:CDS
TCGCCGTCATGGCTTGATTA+TGG 0.203458 1_4:-51085955 Msa0168470:CDS
GTTTACGAAGGCAGGGTTTA+AGG 0.206012 1_4:-51086021 Msa0168470:CDS
CGATATACTCTTCTTCTTTA+GGG 0.222755 1_4:+51086048 None:intergenic
CTCTCAGATTGGCTGATCTT+TGG 0.227283 1_4:+51084019 None:intergenic
TACAATGTTTCTCTTCAAAT+TGG 0.240007 1_4:+51087199 None:intergenic
GTCCTGTCTACCCGACATTT+TGG 0.244718 1_4:-51086106 Msa0168470:CDS
TTGAATTGCAAAACCCAAAA+TGG 0.251263 1_4:-51087308 Msa0168470:CDS
CGCCGTCATGGCTTGATTAT+GGG 0.259408 1_4:-51085954 Msa0168470:CDS
ATCTGGGGATTCTCCTTTGC+AGG 0.267355 1_4:-51085904 Msa0168470:intron
CGCGTTTCTTCGCAGATGTT+TGG 0.268470 1_4:-51086079 Msa0168470:CDS
TTAAGGATGTCCAGCTAAAA+AGG 0.270534 1_4:-51086004 Msa0168470:CDS
ACAAGTGGACTTATAAAATA+AGG 0.279635 1_4:+51083788 None:intergenic
TCTCAGATTGGCTGATCTTT+GGG 0.280706 1_4:+51084020 None:intergenic
AAGAAGACAAAGGGATTTAC+AGG 0.286308 1_4:+51084125 None:intergenic
TTCTTACTGCGCTTTGCCTT+GGG 0.316900 1_4:-51084107 Msa0168470:CDS
TCTTTGAGCCACATGTAAAT+AGG 0.317118 1_4:+51084053 None:intergenic
CTTCTTACTGCGCTTTGCCT+TGG 0.324170 1_4:-51084108 Msa0168470:CDS
AAGAATCAATGCTAAAATTA+GGG 0.329851 1_4:-51087225 Msa0168470:CDS
TGCAAAACCCAAAATGGAAA+TGG 0.342940 1_4:-51087302 Msa0168470:CDS
GTTGATGTTGGTGGTGGTAC+TGG 0.349346 1_4:-51086978 Msa0168470:CDS
ACTGGTGTTAAGCCTGCATC+TGG 0.356332 1_4:-51085921 Msa0168470:CDS
ACCCAAAATGGAAATGGGTT+TGG 0.363731 1_4:-51087296 Msa0168470:CDS
TGTTTCTCAGTATTGAATAC+TGG 0.367884 1_4:-51086199 Msa0168470:intron
CCAATCTGAGAGAGATTTGT+AGG 0.373317 1_4:-51084008 Msa0168470:exon
GGTACTGGTTTCACTACATT+GGG 0.400200 1_4:-51086963 Msa0168470:CDS
TAAGCAAAAGGAACCACTTA+AGG 0.409007 1_4:-51086871 Msa0168470:CDS
ATAAACCTGGGTTGTGAACT+TGG 0.409316 1_4:+51087143 None:intergenic
AAGGATTGTAAAATTGTTGA+AGG 0.409383 1_4:-51086852 Msa0168470:CDS
AATATGCTTGTTGTTGATGT+TGG 0.423767 1_4:-51086990 Msa0168470:CDS
ATCGAGTGGTTTACGAAGGC+AGG 0.431658 1_4:-51086029 Msa0168470:CDS
ATTATGGGTTGTTCTGTGAC+TGG 0.435412 1_4:-51085939 Msa0168470:CDS
TTGATGCCACGCTGTGGATC+CGG 0.441360 1_4:+51086176 None:intergenic
GCAAAACCCAAAATGGAAAT+GGG 0.445634 1_4:-51087301 Msa0168470:CDS
ATGTTATAAACCCTGGTCAT+TGG 0.460038 1_4:-51087064 Msa0168470:CDS
ATGCTTGTTGTTGATGTTGG+TGG 0.461058 1_4:-51086987 Msa0168470:CDS
GGAAATGGGTTTGGTTTCAC+AGG 0.462226 1_4:-51087287 Msa0168470:CDS
AACCAAAATGTCGGGTAGAC+AGG 0.473847 1_4:+51086104 None:intergenic
TGGGCGTCCTAGCAGCTTCG+TGG 0.475392 1_4:-51084088 Msa0168470:CDS
TTCCTATCAGTAAGTTCAGC+TGG 0.478104 1_4:+51087011 None:intergenic
TGGTACTGGTTTCACTACAT+TGG 0.488035 1_4:-51086964 Msa0168470:CDS
AGGATTGTAAAATTGTTGAA+GGG 0.496213 1_4:-51086851 Msa0168470:CDS
GTGGCATCAAGGAAGCATAC+AGG 0.498940 1_4:-51086163 Msa0168470:CDS
TTCACAGGTTCAGATTTCAA+TGG 0.502460 1_4:-51087272 Msa0168470:CDS
CCTACAAATCTCTCTCAGAT+TGG 0.504843 1_4:+51084008 None:intergenic
GCTTGCTAAAGCTAAGCAAA+AGG 0.506693 1_4:-51086883 Msa0168470:CDS
CTTGTTGTTGATGTTGGTGG+TGG 0.511570 1_4:-51086984 Msa0168470:CDS
AACCAGCTGAACTTACTGAT+AGG 0.522090 1_4:-51087013 Msa0168470:CDS
TTTGCTGCAGCTTGGTCCAA+AGG 0.523778 1_4:-51084165 Msa0168470:intron
CTGGTGTTAAGCCTGCATCT+GGG 0.528996 1_4:-51085920 Msa0168470:CDS
AACGCGACAACCAAAATGTC+GGG 0.531908 1_4:+51086096 None:intergenic
TATTGATTCCTATTTACATG+TGG 0.537530 1_4:-51084061 Msa0168470:CDS
AAAGGAGAATCCCCAGATGC+AGG 0.539061 1_4:+51085909 None:intergenic
GGATCCACAGCGTGGCATCA+AGG 0.541356 1_4:-51086174 Msa0168470:CDS
TATCGTGGAGTTCGCCGTCA+TGG 0.558525 1_4:-51085966 Msa0168470:CDS
GGATTGTAAAATTGTTGAAG+GGG 0.558559 1_4:-51086850 Msa0168470:CDS
AAGCGCAGTAAGAAGACAAA+GGG 0.559888 1_4:+51084116 None:intergenic
TGGTGTTAAGCCTGCATCTG+GGG 0.564309 1_4:-51085919 Msa0168470:CDS
ATACAAACCACGAAGCTGCT+AGG 0.565899 1_4:+51084081 None:intergenic
ATATCTTCAGTCCAATGACC+AGG 0.572070 1_4:+51087053 None:intergenic
TCTCAGTATTGAATACTGGC+CGG 0.576769 1_4:-51086195 Msa0168470:intron
AAGATGACAAATACCTGCAA+AGG 0.577073 1_4:+51085891 None:intergenic
GCTGATAGATATGTGTCCGC+TGG 0.579059 1_4:-51086795 Msa0168470:CDS
TCAGCATAATCAGTTCGAAA+GGG 0.581535 1_4:+51086813 None:intergenic
TTAGCTTTAGCAAGCTGATG+AGG 0.586187 1_4:+51086891 None:intergenic
ATCAGCATAATCAGTTCGAA+AGG 0.586784 1_4:+51086812 None:intergenic
TCGAGTGGTTTACGAAGGCA+GGG 0.588098 1_4:-51086028 Msa0168470:CDS
GAATTGAGGTTACCGAGTAG+TGG 0.589175 1_4:+51087495 None:intergenic
CAAGACCAAGTTCACAACCC+AGG 0.594018 1_4:-51087148 Msa0168470:CDS
ATAGATATGTGTCCGCTGGA+AGG 0.594629 1_4:-51086791 Msa0168470:intron
TGGCATCAAGGAAGCATACA+GGG 0.598551 1_4:-51086162 Msa0168470:CDS
AAAGCGCAGTAAGAAGACAA+AGG 0.601046 1_4:+51084115 None:intergenic
CGAAGCTGCTAGGACGCCCA+AGG 0.601692 1_4:+51084091 None:intergenic
AACCCATAATCAAGCCATGA+CGG 0.615385 1_4:+51085952 None:intergenic
AAACGCGACAACCAAAATGT+CGG 0.616259 1_4:+51086095 None:intergenic
TTTAGAGGAGGTCCTTACGA+AGG 0.619192 1_4:+51087742 None:intergenic
GTGTAAGATTATTACATATG+CGG 0.628265 1_4:-51083936 Msa0168470:three_prime_UTR
GCAGAAGATTGAAACGAAGG+TGG 0.638476 1_4:+51087552 None:intergenic
GCTTCCTTGATGCCACGCTG+TGG 0.644008 1_4:+51086170 None:intergenic
ACTCTCTCTCTACCACTACT+CGG 0.650592 1_4:-51087507 Msa0168470:intron
GTAGTGGTAGAGAGAGAGTG+AGG 0.655128 1_4:+51087511 None:intergenic
TATCTTCAGTCCAATGACCA+GGG 0.655879 1_4:+51087054 None:intergenic
AATGACCAGGGTTTATAACA+TGG 0.658874 1_4:+51087066 None:intergenic
ATTGGCCCAAAATGGTATCG+TGG 0.672762 1_4:-51085981 Msa0168470:CDS
GTAGCAGAAGATTGAAACGA+AGG 0.677715 1_4:+51087549 None:intergenic
GTATATCGAGTGGTTTACGA+AGG 0.686187 1_4:-51086033 Msa0168470:CDS
ATGGCTTCACTAATGCTCAG+TGG 0.694171 1_4:-51087350 Msa0168470:CDS
TATGACCATGTTATAAACCC+TGG 0.696580 1_4:-51087071 Msa0168470:CDS
TACTGGCCGGATCCACAGCG+TGG 0.700858 1_4:-51086182 Msa0168470:CDS
AAGAAGAAGAGTATATCGAG+TGG 0.708626 1_4:-51086043 Msa0168470:CDS
GACATCGATATACCTTCCAG+CGG 0.718494 1_4:+51086779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAGTTTTTTTTTTTTTTT+TGG - chr1_4:51085167-51085186 Msa0168470:intron 10.0%
!!! AAAAAAAGTGATTTTTATTA+CGG + chr1_4:51085997-51086016 None:intergenic 10.0%
!!! AAAAAATAATTTAGTTTGTT+TGG - chr1_4:51086018-51086037 Msa0168470:CDS 10.0%
!!! AAAAAATAGATTTTTTTTAG+AGG + chr1_4:51086113-51086132 None:intergenic 10.0%
!!! TTTAATTTTATTTTCAATTG+CGG - chr1_4:51087022-51087041 Msa0168470:CDS 10.0%
!!! TATTTTATCAAATTTCATAA+TGG - chr1_4:51087663-51087682 Msa0168470:five_prime_UTR 10.0%
!! CAAAAAAATAAAAACAATGT+CGG + chr1_4:51083862-51083881 None:intergenic 15.0%
!!! TTATTTTAATCTGTAACAAA+CGG + chr1_4:51085893-51085912 None:intergenic 15.0%
!!! TTTTAAAAATCTGTAACAAA+CGG - chr1_4:51086198-51086217 Msa0168470:intron 15.0%
!! TTAAAAAAAGCTATAACAAA+CGG - chr1_4:51086270-51086289 Msa0168470:intron 15.0%
!! TGATTTATTATTATTAAGTG+TGG - chr1_4:51086907-51086926 Msa0168470:CDS 15.0%
!! ATAAAATTAAAAAACATACC+TGG + chr1_4:51087013-51087032 None:intergenic 15.0%
!!! TGAATTTTTCACATTAGAAT+GGG + chr1_4:51084155-51084174 None:intergenic 20.0%
!!! GATTTTGTAGATTAATTCAA+TGG - chr1_4:51084199-51084218 Msa0168470:intron 20.0%
!! AAGAATCAATGCTAAAATTA+GGG - chr1_4:51084343-51084362 Msa0168470:intron 20.0%
!! AACCATGCATAATTATTTAA+AGG + chr1_4:51084846-51084865 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG + chr1_4:51085067-51085086 None:intergenic 20.0%
!! TTTGATTAAGCATAAAAGAA+GGG + chr1_4:51085733-51085752 None:intergenic 20.0%
!! ATTTGATTAAGCATAAAAGA+AGG + chr1_4:51085734-51085753 None:intergenic 20.0%
!! TTTATGCTTAATCAAATCAA+AGG - chr1_4:51085737-51085756 Msa0168470:intron 20.0%
!!! TATTTTAATCTGTAACAAAC+GGG + chr1_4:51085892-51085911 None:intergenic 20.0%
!! TAAAAAAAGCTATAACAAAC+GGG - chr1_4:51086271-51086290 Msa0168470:intron 20.0%
!! GAATAATAGATAGAAAAAAG+AGG + chr1_4:51086488-51086507 None:intergenic 20.0%
!!! ATTTTTACATGAAATGACTA+TGG - chr1_4:51086623-51086642 Msa0168470:intron 20.0%
!! AAGTTTAACCATATTAAATG+TGG - chr1_4:51086766-51086785 Msa0168470:intron 20.0%
!! ATCATGTTTGATATTTAAGT+TGG - chr1_4:51086806-51086825 Msa0168470:CDS 20.0%
!!! GAATATAGAGATTTTGATTT+AGG + chr1_4:51087219-51087238 None:intergenic 20.0%
!!! AAGGTTTTTTTTGTTGTTGA+AGG + chr1_4:51083810-51083829 None:intergenic 25.0%
!!! AAAATCAAGTTTTGAGTATG+TGG - chr1_4:51083924-51083943 Msa0168470:three_prime_UTR 25.0%
!!! AAAACTGAATTTGAGTTGAA+AGG + chr1_4:51084117-51084136 None:intergenic 25.0%
!! GTGAATTTTTCACATTAGAA+TGG + chr1_4:51084156-51084175 None:intergenic 25.0%
!!! TAGCATTGATTCTTGTTTTT+GGG + chr1_4:51084337-51084356 None:intergenic 25.0%
!!! TTAGCATTGATTCTTGTTTT+TGG + chr1_4:51084338-51084357 None:intergenic 25.0%
! CAAGAATCAATGCTAAAATT+AGG - chr1_4:51084342-51084361 Msa0168470:intron 25.0%
! TACAATGTTTCTCTTCAAAT+TGG + chr1_4:51084372-51084391 None:intergenic 25.0%
!! TTTTTGTGTTGTATAAACCT+GGG + chr1_4:51084440-51084459 None:intergenic 25.0%
!!! TTTTTTGTGTTGTATAAACC+TGG + chr1_4:51084441-51084460 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG - chr1_4:51084450-51084469 Msa0168470:intron 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG - chr1_4:51084459-51084478 Msa0168470:intron 25.0%
!! ACAATTTTACAATCCTTAAG+TGG + chr1_4:51084713-51084732 None:intergenic 25.0%
! AAGGATTGTAAAATTGTTGA+AGG - chr1_4:51084716-51084735 Msa0168470:intron 25.0%
! AGGATTGTAAAATTGTTGAA+GGG - chr1_4:51084717-51084736 Msa0168470:intron 25.0%
! AAGTGTACATAGATATAAAG+TGG - chr1_4:51085231-51085250 Msa0168470:intron 25.0%
!! AATCAAAGGTATGTTGTATA+AGG - chr1_4:51085751-51085770 Msa0168470:intron 25.0%
! CATAAACACTATATGCTTTA+CGG - chr1_4:51085854-51085873 Msa0168470:intron 25.0%
! GAAAAAAGAGGTAAACTTAA+AGG + chr1_4:51086476-51086495 None:intergenic 25.0%
! TCAGTAAGCATATAGATATA+GGG + chr1_4:51086604-51086623 None:intergenic 25.0%
! ATCAGTAAGCATATAGATAT+AGG + chr1_4:51086605-51086624 None:intergenic 25.0%
!!! ATGTTTGATATTTAAGTTGG+AGG - chr1_4:51086809-51086828 Msa0168470:CDS 25.0%
! AGTTGTTATCAATGTAGATA+TGG - chr1_4:51086985-51087004 Msa0168470:CDS 25.0%
! GTTGTTATCAATGTAGATAT+GGG - chr1_4:51086986-51087005 Msa0168470:CDS 25.0%
!!! TATTGATTCCTATTTACATG+TGG - chr1_4:51087507-51087526 Msa0168470:intron 25.0%
! GTGTAAGATTATTACATATG+CGG - chr1_4:51087632-51087651 Msa0168470:five_prime_UTR 25.0%
CAACAAAAAAAACCTTCGTA+AGG - chr1_4:51083814-51083833 Msa0168470:three_prime_UTR 30.0%
!! GAATTTGAGTTGAAAGGAAT+GGG + chr1_4:51084111-51084130 None:intergenic 30.0%
!! TGAATTTGAGTTGAAAGGAA+TGG + chr1_4:51084112-51084131 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG - chr1_4:51084260-51084279 Msa0168470:intron 30.0%
!!! AGCATTGATTCTTGTTTTTG+GGG + chr1_4:51084336-51084355 None:intergenic 30.0%
!! AATATGCTTGTTGTTGATGT+TGG - chr1_4:51084578-51084597 Msa0168470:intron 30.0%
GGATTGTAAAATTGTTGAAG+GGG - chr1_4:51084718-51084737 Msa0168470:intron 30.0%
CGCCTTTAAATAATTATGCA+TGG - chr1_4:51084841-51084860 Msa0168470:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG + chr1_4:51084926-51084945 None:intergenic 30.0%
! TGTTTTCGTATAAGCTATCT+TGG + chr1_4:51085039-51085058 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG - chr1_4:51085327-51085346 Msa0168470:intron 30.0%
! TGTTTCTCAGTATTGAATAC+TGG - chr1_4:51085369-51085388 Msa0168470:intron 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG - chr1_4:51085420-51085439 Msa0168470:intron 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG - chr1_4:51085421-51085440 Msa0168470:intron 30.0%
CGATATACTCTTCTTCTTTA+GGG + chr1_4:51085523-51085542 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG + chr1_4:51085524-51085543 None:intergenic 30.0%
!! TATAAGGTTGTTTCTCCTTA+TGG - chr1_4:51085767-51085786 Msa0168470:intron 30.0%
CGTAAAGCATATAGTGTTTA+TGG + chr1_4:51085856-51085875 None:intergenic 30.0%
TTTAGAGGAGAGAGAAAATA+TGG + chr1_4:51086098-51086117 None:intergenic 30.0%
TTGAAATAGTCATCAGTTGA+GGG + chr1_4:51086321-51086340 None:intergenic 30.0%
! TTTGAAATAGTCATCAGTTG+AGG + chr1_4:51086322-51086341 None:intergenic 30.0%
!!! TGTAAATCCCCTTTTTTATC+CGG - chr1_4:51086418-51086437 Msa0168470:intron 30.0%
AAGAGGTAAACTTAAAGGAT+GGG + chr1_4:51086471-51086490 None:intergenic 30.0%
AAAGAGGTAAACTTAAAGGA+TGG + chr1_4:51086472-51086491 None:intergenic 30.0%
CCAACAAAAAAACATGTACA+GGG + chr1_4:51086556-51086575 None:intergenic 30.0%
TCCAACAAAAAAACATGTAC+AGG + chr1_4:51086557-51086576 None:intergenic 30.0%
GGAAGTTTCCACATTTAATA+TGG + chr1_4:51086777-51086796 None:intergenic 30.0%
ATCAAACATGATCACTTCAA+TGG + chr1_4:51086798-51086817 None:intergenic 30.0%
!! TTTATTTTCAATTGCGGTCA+TGG - chr1_4:51087028-51087047 Msa0168470:CDS 30.0%
GAGTTATGAACAAAACACTA+CGG - chr1_4:51087124-51087143 Msa0168470:CDS 30.0%
ATTCAGCTTAACAAAGCTAT+AGG - chr1_4:51087235-51087254 Msa0168470:CDS 30.0%
TAACAAAGCTATAGGATTTG+AGG - chr1_4:51087243-51087262 Msa0168470:CDS 30.0%
! TTTTCAACATCTTCTTCCTT+TGG + chr1_4:51087422-51087441 None:intergenic 30.0%
! TTTTTCTGCAAGCTTTTTAC+AGG - chr1_4:51087721-51087740 Msa0168470:five_prime_UTR 30.0%
!!! GGTTTTATTAGACATTTCCA+GGG + chr1_4:51087762-51087781 None:intergenic 30.0%
!!! AGGTTTTATTAGACATTTCC+AGG + chr1_4:51087763-51087782 None:intergenic 30.0%
! GGACCTCCTCTAAAAAAAAT+TGG - chr1_4:51083835-51083854 Msa0168470:three_prime_UTR 35.0%
!!! GGTCCAATTTTTTTTAGAGG+AGG + chr1_4:51083841-51083860 None:intergenic 35.0%
!!! GTCGGTCCAATTTTTTTTAG+AGG + chr1_4:51083844-51083863 None:intergenic 35.0%
GGAAATTTAGCAGAGAATTG+AGG + chr1_4:51084090-51084109 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG - chr1_4:51084266-51084285 Msa0168470:intron 35.0%
GCAAAACCCAAAATGGAAAT+GGG - chr1_4:51084267-51084286 Msa0168470:intron 35.0%
! ACCAAACCCATTTCCATTTT+GGG + chr1_4:51084276-51084295 None:intergenic 35.0%
! AACCAAACCCATTTCCATTT+TGG + chr1_4:51084277-51084296 None:intergenic 35.0%
TTCACAGGTTCAGATTTCAA+TGG - chr1_4:51084296-51084315 Msa0168470:intron 35.0%
TATGACCATGTTATAAACCC+TGG - chr1_4:51084497-51084516 Msa0168470:intron 35.0%
AATGACCAGGGTTTATAACA+TGG + chr1_4:51084505-51084524 None:intergenic 35.0%
ATGTTATAAACCCTGGTCAT+TGG - chr1_4:51084504-51084523 Msa0168470:intron 35.0%
TAAGCAAAAGGAACCACTTA+AGG - chr1_4:51084697-51084716 Msa0168470:intron 35.0%
TCAGCATAATCAGTTCGAAA+GGG + chr1_4:51084758-51084777 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG + chr1_4:51084759-51084778 None:intergenic 35.0%
! TGTTCTTCTTGATGACTGTT+AGG - chr1_4:51084899-51084918 Msa0168470:intron 35.0%
! GTTCTTCTTGATGACTGTTA+GGG - chr1_4:51084900-51084919 Msa0168470:intron 35.0%
GCTTATTTGAGCTCATTTAC+TGG - chr1_4:51084936-51084955 Msa0168470:intron 35.0%
AAAAAAACTAAGCCACTGCT+TGG + chr1_4:51085159-51085178 None:intergenic 35.0%
TGCAAATACACCTCTTTCAA+AGG + chr1_4:51085260-51085279 None:intergenic 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG - chr1_4:51085419-51085438 Msa0168470:intron 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG - chr1_4:51085422-51085441 Msa0168470:intron 35.0%
! AAGAAGAAGAGTATATCGAG+TGG - chr1_4:51085525-51085544 Msa0168470:intron 35.0%
TTAAGGATGTCCAGCTAAAA+AGG - chr1_4:51085564-51085583 Msa0168470:intron 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG - chr1_4:51085579-51085598 Msa0168470:intron 35.0%
AAGATGACAAATACCTGCAA+AGG + chr1_4:51085680-51085699 None:intergenic 35.0%
TCAGTAAGTCATAACATGGT+AGG + chr1_4:51085833-51085852 None:intergenic 35.0%
ATGGTCAGTAAGTCATAACA+TGG + chr1_4:51085837-51085856 None:intergenic 35.0%
AAACACTATATGCTTTACGG+TGG - chr1_4:51085857-51085876 Msa0168470:intron 35.0%
AACACTATATGCTTTACGGT+GGG - chr1_4:51085858-51085877 Msa0168470:intron 35.0%
GTAGGCACATCTAATCTAAA+AGG + chr1_4:51086365-51086384 None:intergenic 35.0%
GTTCCTAAAATGTTGCAAGT+AGG + chr1_4:51086383-51086402 None:intergenic 35.0%
ATAGGTTATCAAATGTGCTC+AGG + chr1_4:51086448-51086467 None:intergenic 35.0%
GTAAACTTAAAGGATGGGAT+AGG + chr1_4:51086466-51086485 None:intergenic 35.0%
!!! CCCTGTACATGTTTTTTTGT+TGG - chr1_4:51086553-51086572 Msa0168470:intron 35.0%
CTACTTGCACTTGTAAGTAT+CGG + chr1_4:51086937-51086956 None:intergenic 35.0%
AGTTTAGTACCCAACAAGTA+TGG - chr1_4:51086955-51086974 Msa0168470:CDS 35.0%
GTTTAGTACCCAACAAGTAT+GGG - chr1_4:51086956-51086975 Msa0168470:CDS 35.0%
CTTCAATACCCATACTTGTT+GGG + chr1_4:51086967-51086986 None:intergenic 35.0%
ACTTCAATACCCATACTTGT+TGG + chr1_4:51086968-51086987 None:intergenic 35.0%
CATAAGGATGACAATTGGTA+GGG + chr1_4:51087082-51087101 None:intergenic 35.0%
ACATAAGGATGACAATTGGT+AGG + chr1_4:51087083-51087102 None:intergenic 35.0%
CAAGACATAAGGATGACAAT+TGG + chr1_4:51087087-51087106 None:intergenic 35.0%
CAATTGTCATCCTTATGTCT+TGG - chr1_4:51087085-51087104 Msa0168470:CDS 35.0%
ACTTACACTTCCAAGACATA+AGG + chr1_4:51087098-51087117 None:intergenic 35.0%
CCTTCAATGTTAACAGACAT+GGG - chr1_4:51087157-51087176 Msa0168470:CDS 35.0%
AAGAAGACAAAGGGATTTAC+AGG + chr1_4:51087446-51087465 None:intergenic 35.0%
TCTTTGAGCCACATGTAAAT+AGG + chr1_4:51087518-51087537 None:intergenic 35.0%
ATGAAAAACTGATCTCAACG+AGG + chr1_4:51087701-51087720 None:intergenic 35.0%
! GGTCATACTAATTTTATCCC+TGG - chr1_4:51087742-51087761 Msa0168470:five_prime_UTR 35.0%
GTAGCAGAAGATTGAAACGA+AGG + chr1_4:51084022-51084041 None:intergenic 40.0%
! ACCCAAAATGGAAATGGGTT+TGG - chr1_4:51084272-51084291 Msa0168470:intron 40.0%
ATAAACCTGGGTTGTGAACT+TGG + chr1_4:51084428-51084447 None:intergenic 40.0%
TATCTTCAGTCCAATGACCA+GGG + chr1_4:51084517-51084536 None:intergenic 40.0%
ATATCTTCAGTCCAATGACC+AGG + chr1_4:51084518-51084537 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG - chr1_4:51084555-51084574 Msa0168470:intron 40.0%
TTCCTATCAGTAAGTTCAGC+TGG + chr1_4:51084560-51084579 None:intergenic 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG - chr1_4:51084581-51084600 Msa0168470:intron 40.0%
!! TGGTACTGGTTTCACTACAT+TGG - chr1_4:51084604-51084623 Msa0168470:intron 40.0%
!! GGTACTGGTTTCACTACATT+GGG - chr1_4:51084605-51084624 Msa0168470:intron 40.0%
!! TTAGCTTTAGCAAGCTGATG+AGG + chr1_4:51084680-51084699 None:intergenic 40.0%
! GCTTGCTAAAGCTAAGCAAA+AGG - chr1_4:51084685-51084704 Msa0168470:intron 40.0%
! TAAAGGCGTATGAAACAGCA+TGG + chr1_4:51084829-51084848 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG - chr1_4:51085247-51085266 Msa0168470:intron 40.0%
! TCTCAGTATTGAATACTGGC+CGG - chr1_4:51085373-51085392 Msa0168470:intron 40.0%
AAACGCGACAACCAAAATGT+CGG + chr1_4:51085476-51085495 None:intergenic 40.0%
GTATATCGAGTGGTTTACGA+AGG - chr1_4:51085535-51085554 Msa0168470:intron 40.0%
GATGTCCAGCTAAAAAGGAT+TGG - chr1_4:51085569-51085588 Msa0168470:intron 40.0%
! GAACTCCACGATACCATTTT+GGG + chr1_4:51085595-51085614 None:intergenic 40.0%
AACCCATAATCAAGCCATGA+CGG + chr1_4:51085619-51085638 None:intergenic 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG - chr1_4:51085629-51085648 Msa0168470:intron 40.0%
TGAAAAAACAGACACACACC+AGG + chr1_4:51085796-51085815 None:intergenic 40.0%
!!! GGTGTGTGTCTGTTTTTTCA+AGG - chr1_4:51085796-51085815 Msa0168470:intron 40.0%
GTCATAACATGGTAGGTATC+AGG + chr1_4:51085826-51085845 None:intergenic 40.0%
ATATGCTTTACGGTGGGATT+AGG - chr1_4:51085864-51085883 Msa0168470:intron 40.0%
TATGCTTTACGGTGGGATTA+GGG - chr1_4:51085865-51085884 Msa0168470:intron 40.0%
! GTGCCTACTTGCAACATTTT+AGG - chr1_4:51086377-51086396 Msa0168470:intron 40.0%
AGGTACTCCGGATAAAAAAG+GGG + chr1_4:51086428-51086447 None:intergenic 40.0%
CAGGTACTCCGGATAAAAAA+GGG + chr1_4:51086429-51086448 None:intergenic 40.0%
TCAGGTACTCCGGATAAAAA+AGG + chr1_4:51086430-51086449 None:intergenic 40.0%
CACACACAGACACTACAAAA+AGG + chr1_4:51086697-51086716 None:intergenic 40.0%
TTGGAGGAAAACTAGTTCCT+GGG - chr1_4:51086825-51086844 Msa0168470:CDS 40.0%
ATCAATGTAGATATGGGTCC+AGG - chr1_4:51086992-51087011 Msa0168470:CDS 40.0%
! TCTTGGAAGTGTAAGTAGCA+TGG - chr1_4:51087102-51087121 Msa0168470:CDS 40.0%
GCCTTCAATGTTAACAGACA+TGG - chr1_4:51087156-51087175 Msa0168470:CDS 40.0%
CCCATGTCTGTTAACATTGA+AGG + chr1_4:51087160-51087179 None:intergenic 40.0%
AAGCGCAGTAAGAAGACAAA+GGG + chr1_4:51087455-51087474 None:intergenic 40.0%
AAAGCGCAGTAAGAAGACAA+AGG + chr1_4:51087456-51087475 None:intergenic 40.0%
! TCTCAGATTGGCTGATCTTT+GGG + chr1_4:51087551-51087570 None:intergenic 40.0%
CCTACAAATCTCTCTCAGAT+TGG + chr1_4:51087563-51087582 None:intergenic 40.0%
CCAATCTGAGAGAGATTTGT+AGG - chr1_4:51087560-51087579 Msa0168470:five_prime_UTR 40.0%
TTTAGAGGAGGTCCTTACGA+AGG + chr1_4:51083829-51083848 None:intergenic 45.0%
GCAGAAGATTGAAACGAAGG+TGG + chr1_4:51084019-51084038 None:intergenic 45.0%
ACTCTCTCTCTACCACTACT+CGG - chr1_4:51084061-51084080 Msa0168470:CDS 45.0%
GAATTGAGGTTACCGAGTAG+TGG + chr1_4:51084076-51084095 None:intergenic 45.0%
ATGGCTTCACTAATGCTCAG+TGG - chr1_4:51084218-51084237 Msa0168470:intron 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG - chr1_4:51084281-51084300 Msa0168470:intron 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG - chr1_4:51084584-51084603 Msa0168470:intron 45.0%
ATAGATATGTGTCCGCTGGA+AGG - chr1_4:51084777-51084796 Msa0168470:intron 45.0%
GACATCGATATACCTTCCAG+CGG + chr1_4:51084792-51084811 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG - chr1_4:51084909-51084928 Msa0168470:intron 45.0%
CTGTTAGGGCCTATTTGGAT+TGG - chr1_4:51084914-51084933 Msa0168470:intron 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG - chr1_4:51085144-51085163 Msa0168470:intron 45.0%
CAGCTACAAGATCGCAACAA+AGG + chr1_4:51085202-51085221 None:intergenic 45.0%
! TGGCATCAAGGAAGCATACA+GGG - chr1_4:51085406-51085425 Msa0168470:intron 45.0%
GGGGGCAAAGCATGTTTAAT+TGG - chr1_4:51085440-51085459 Msa0168470:intron 45.0%
AACCAAAATGTCGGGTAGAC+AGG + chr1_4:51085467-51085486 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG + chr1_4:51085475-51085494 None:intergenic 45.0%
GTTTACGAAGGCAGGGTTTA+AGG - chr1_4:51085547-51085566 Msa0168470:intron 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG + chr1_4:51085577-51085596 None:intergenic 45.0%
ATTGGCCCAAAATGGTATCG+TGG - chr1_4:51085587-51085606 Msa0168470:intron 45.0%
! CGAACTCCACGATACCATTT+TGG + chr1_4:51085596-51085615 None:intergenic 45.0%
TGTTTCTCCTTATGGTGTCC+TGG - chr1_4:51085775-51085794 Msa0168470:intron 45.0%
ATGCTTTACGGTGGGATTAG+GGG - chr1_4:51085866-51085885 Msa0168470:intron 45.0%
!! ATCAGTTGAGGGTGTTCACA+CGG + chr1_4:51086310-51086329 None:intergenic 45.0%
TCAAATGTGCTCAGGTACTC+CGG + chr1_4:51086440-51086459 None:intergenic 45.0%
GTTGGAGGAAAACTAGTTCC+TGG - chr1_4:51086824-51086843 Msa0168470:CDS 45.0%
! CCATTTTCTTTACCATGCCC+AGG + chr1_4:51086845-51086864 None:intergenic 45.0%
CCTGGGCATGGTAAAGAAAA+TGG - chr1_4:51086842-51086861 Msa0168470:CDS 45.0%
GACATGGGTATAGTAGTCAC+TGG - chr1_4:51087172-51087191 Msa0168470:CDS 45.0%
CGCTTCTTACCTCTTTGCAT+TGG - chr1_4:51087300-51087319 Msa0168470:CDS 45.0%
! GCAGTTTTGCCAATGCAAAG+AGG + chr1_4:51087312-51087331 None:intergenic 45.0%
!! TTCTGCAATTTGCTGCAGCT+TGG - chr1_4:51087395-51087414 Msa0168470:intron 45.0%
TTCTTACTGCGCTTTGCCTT+GGG - chr1_4:51087461-51087480 Msa0168470:intron 45.0%
ATACAAACCACGAAGCTGCT+AGG + chr1_4:51087490-51087509 None:intergenic 45.0%
! CTCTCAGATTGGCTGATCTT+TGG + chr1_4:51087552-51087571 None:intergenic 45.0%
GTAGTGGTAGAGAGAGAGTG+AGG + chr1_4:51084060-51084079 None:intergenic 50.0%
CAAGACCAAGTTCACAACCC+AGG - chr1_4:51084420-51084439 Msa0168470:intron 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG - chr1_4:51084590-51084609 Msa0168470:intron 50.0%
GCTGATAGATATGTGTCCGC+TGG - chr1_4:51084773-51084792 Msa0168470:intron 50.0%
! GTGGCATCAAGGAAGCATAC+AGG - chr1_4:51085405-51085424 Msa0168470:intron 50.0%
! GTCCTGTCTACCCGACATTT+TGG - chr1_4:51085462-51085481 Msa0168470:intron 50.0%
CGCGTTTCTTCGCAGATGTT+TGG - chr1_4:51085489-51085508 Msa0168470:intron 50.0%
ATCGAGTGGTTTACGAAGGC+AGG - chr1_4:51085539-51085558 Msa0168470:intron 50.0%
TCGAGTGGTTTACGAAGGCA+GGG - chr1_4:51085540-51085559 Msa0168470:intron 50.0%
TCGCCGTCATGGCTTGATTA+TGG - chr1_4:51085613-51085632 Msa0168470:intron 50.0%
CGCCGTCATGGCTTGATTAT+GGG - chr1_4:51085614-51085633 Msa0168470:intron 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG - chr1_4:51085647-51085666 Msa0168470:intron 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG - chr1_4:51085648-51085667 Msa0168470:intron 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG - chr1_4:51085649-51085668 Msa0168470:intron 50.0%
AAAGGAGAATCCCCAGATGC+AGG + chr1_4:51085662-51085681 None:intergenic 50.0%
ATCTGGGGATTCTCCTTTGC+AGG - chr1_4:51085664-51085683 Msa0168470:intron 50.0%
ACACACACCAGGACACCATA+AGG + chr1_4:51085785-51085804 None:intergenic 50.0%
GGAAAACTAGTTCCTGGGCA+TGG - chr1_4:51086830-51086849 Msa0168470:CDS 50.0%
GGGTATAGTAGTCACTGGTC+AGG - chr1_4:51087177-51087196 Msa0168470:CDS 50.0%
TTTGCTGCAGCTTGGTCCAA+AGG - chr1_4:51087403-51087422 Msa0168470:intron 50.0%
CTTCTTACTGCGCTTTGCCT+TGG - chr1_4:51087460-51087479 Msa0168470:intron 50.0%
TTGATGCCACGCTGTGGATC+CGG + chr1_4:51085395-51085414 None:intergenic 55.0%
TATCGTGGAGTTCGCCGTCA+TGG - chr1_4:51085602-51085621 Msa0168470:intron 55.0%
GGATCCACAGCGTGGCATCA+AGG - chr1_4:51085394-51085413 Msa0168470:intron 60.0%
GCTTCCTTGATGCCACGCTG+TGG + chr1_4:51085401-51085420 None:intergenic 60.0%
TACTGGCCGGATCCACAGCG+TGG - chr1_4:51085386-51085405 Msa0168470:intron 65.0%
CGAAGCTGCTAGGACGCCCA+AGG + chr1_4:51087480-51087499 None:intergenic 65.0%
TGGGCGTCCTAGCAGCTTCG+TGG - chr1_4:51087480-51087499 Msa0168470:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51083793 51087797 51083793 ID=Msa0168470;Name=Msa0168470
chr1_4 mRNA 51083793 51087797 51083793 ID=Msa0168470-mRNA-1;Parent=Msa0168470;Name=Msa0168470-mRNA-1;_AED=0.04;_eAED=0.04;_QI=299|1|1|1|0.66|0.5|4|229|347
chr1_4 exon 51083793 51084177 51083793 ID=Msa0168470-mRNA-1:exon:15004;Parent=Msa0168470-mRNA-1
chr1_4 exon 51085905 51086211 51085905 ID=Msa0168470-mRNA-1:exon:15003;Parent=Msa0168470-mRNA-1
chr1_4 exon 51086792 51087381 51086792 ID=Msa0168470-mRNA-1:exon:15002;Parent=Msa0168470-mRNA-1
chr1_4 exon 51087508 51087797 51087508 ID=Msa0168470-mRNA-1:exon:15001;Parent=Msa0168470-mRNA-1
chr1_4 five_prime_UTR 51087508 51087797 51087508 ID=Msa0168470-mRNA-1:five_prime_utr;Parent=Msa0168470-mRNA-1
chr1_4 five_prime_UTR 51087373 51087381 51087373 ID=Msa0168470-mRNA-1:five_prime_utr;Parent=Msa0168470-mRNA-1
chr1_4 CDS 51086792 51087372 51086792 ID=Msa0168470-mRNA-1:cds;Parent=Msa0168470-mRNA-1
chr1_4 CDS 51085905 51086211 51085905 ID=Msa0168470-mRNA-1:cds;Parent=Msa0168470-mRNA-1
chr1_4 CDS 51084022 51084177 51084022 ID=Msa0168470-mRNA-1:cds;Parent=Msa0168470-mRNA-1
chr1_4 three_prime_UTR 51083793 51084021 51083793 ID=Msa0168470-mRNA-1:three_prime_utr;Parent=Msa0168470-mRNA-1
Gene Sequence

>Msa0168470

ATGGCTTCACTAATGCTCAGTGGAACTCAAAAGCTTACATTTTTGAATTGCAAAACCCAAAATGGAAATGGGTTTGGTTTCACAGGTTCAGATTTCAATGGTAAGAGCTTAATTTCCCCAAAAACAAGAATCAATGCTAAAATTAGGGTTTCCAATTTGAAGAGAAACATTGTAGTACGTTCTAGTTCTAGTGTATCATCTTCAAGACCAAGTTCACAACCCAGGTTTATACAACACAAAAAAGAAGCATTTTGGTTTTATAGGTTTCTTTCAATTGTGTATGACCATGTTATAAACCCTGGTCATTGGACTGAAGATATGAGAGATGAAGCTCTTGAACCAGCTGAACTTACTGATAGGAATATGCTTGTTGTTGATGTTGGTGGTGGTACTGGTTTCACTACATTGGGTATTGTTAAGCATGTCGATGCTAAGAATGTAACTATTCTTGATCAGTCACCTCATCAGCTTGCTAAAGCTAAGCAAAAGGAACCACTTAAGGATTGTAAAATTGTTGAAGGGGATGCTGAAGATTTACCCTTTCGAACTGATTATGCTGATAGATATGTGTCCGCTGGAAGTATTGAATACTGGCCGGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAATTTGGGGGCAAAGCATGTTTAATTGGTCCTGTCTACCCGACATTTTGGTTGTCGCGTTTCTTCGCAGATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATCGAGTGGTTTACGAAGGCAGGGTTTAAGGATGTCCAGCTAAAAAGGATTGGCCCAAAATGGTATCGTGGAGTTCGCCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAGCCTGCATCTGGGGATTCTCCTTTGCAGCTTGGTCCAAAGGAAGAAGATGTTGAAAAGCCTGTAAATCCCTTTGTCTTCTTACTGCGCTTTGCCTTGGGCGTCCTAGCAGCTTCGTGGTTTGTATTGATTCCTATTTACATGTGGCTCAAAGATCAAATTGTTCCCAAAGATCAGCCAATCTGA

Protein sequence

>Msa0168470

MASLMLSGTQKLTFLNCKTQNGNGFGFTGSDFNGKSLISPKTRINAKIRVSNLKRNIVVRSSSSVSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFRTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVEKPVNPFVFLLRFALGVLAASWFVLIPIYMWLKDQIVPKDQPI*