AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1082640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082640 MtrunA17_Chr7g0270231 95.872 218 7 1 28 245 1 216 8.85e-152 421
Msa1082640 MtrunA17_Chr8g0352991 87.313 134 15 1 28 161 1 132 6.26e-80 237
Msa1082640 MtrunA17_Chr2g0277211 42.308 156 84 3 93 243 68 222 1.63e-29 110
Msa1082640 MtrunA17_Chr2g0298061 37.267 161 99 2 78 237 71 230 1.29e-23 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082640 AT4G01940.1 67.822 202 55 3 52 245 32 231 7.71e-89 263
Msa1082640 AT5G49940.1 35.897 195 109 5 54 243 51 234 5.84e-26 101
Msa1082640 AT4G25910.1 33.180 217 128 6 39 239 11 226 2.78e-23 94.7
Msa1082640 AT5G49940.2 49.462 93 42 2 98 190 85 172 3.12e-21 88.2

Find 55 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACCACAACTATGAAAA+TGG 0.150095 7_2:+82747572 Msa1082640:CDS
CACTTGCACGATATCTTTAA+TGG 0.162531 7_2:-82747631 None:intergenic
CGTGTTCTTAAGGAGAAATT+TGG 0.227866 7_2:+82747603 Msa1082640:CDS
TTCGTTGGTATTGAACAAAT+TGG 0.356289 7_2:-82747237 None:intergenic
ATCCCGGAGAAGACTGGTTC+TGG 0.389633 7_2:-82747386 None:intergenic
AAGGTAACATTGAGAATATC+TGG 0.389748 7_2:-82748681 None:intergenic
GTCGCCATTGATGGAGCTTC+CGG 0.397069 7_2:-82747207 None:intergenic
GGAGTTAGAGTCGCCATTGA+TGG 0.397641 7_2:-82747216 None:intergenic
CTGGTTCTGGTTAGCGGTAG+AGG 0.412467 7_2:-82747373 None:intergenic
CATAAGACCCATCATTTGAT+AGG 0.420803 7_2:+82748841 Msa1082640:intron
GGGAATCGAACGTGTTCTTA+AGG 0.422078 7_2:+82747593 Msa1082640:CDS
TGATGGAGCTTCCGGAGTTA+TGG 0.424007 7_2:-82747199 None:intergenic
TAACCAGAACCAGTCTTCTC+CGG 0.444988 7_2:+82747383 Msa1082640:CDS
ATTTAAGTCCTATCAAATGA+TGG 0.449168 7_2:-82748849 None:intergenic
TCAACCACAACTATGAAAAT+GGG 0.480712 7_2:+82747573 Msa1082640:CDS
AGTATAATCCCGGAGAAGAC+TGG 0.483617 7_2:-82747392 None:intergenic
GGACCTGAGTCCATTGGATC+AGG 0.493608 7_2:+82748630 Msa1082640:CDS
AACGAGATCGACGTTTGAAA+CGG 0.497051 7_2:-82747436 None:intergenic
AAATTCAAATTCAGTTTCGT+TGG 0.499228 7_2:-82747252 None:intergenic
AGGTGTTAAAGCTGCGATCA+AGG 0.501612 7_2:+82748650 Msa1082640:CDS
GATGTTGTATCCGTTGAAAA+CGG 0.506210 7_2:+82747504 Msa1082640:CDS
TTCATAGTTGTGGTTGAGCT+AGG 0.507201 7_2:-82747567 None:intergenic
AACGGTGAGGTCGAATTTCG+TGG 0.510902 7_2:-82747418 None:intergenic
CCTCCGTCAGAGATGAGGTA+AGG 0.518971 7_2:-82747474 None:intergenic
TATGTTGGACCTGAGTCCAT+TGG 0.522225 7_2:+82748624 Msa1082640:CDS
CGCCCTTACCTCATCTCTGA+CGG 0.525777 7_2:+82747471 Msa1082640:CDS
AGAAGACTGGTTCTGGTTAG+CGG 0.534911 7_2:-82747379 None:intergenic
AACTCCGGAAGCTCCATCAA+TGG 0.535221 7_2:+82747203 Msa1082640:CDS
AACCAGAACCAGTCTTCTCC+GGG 0.537520 7_2:+82747384 Msa1082640:CDS
TTCGTGGCGGAGTATAATCC+CGG 0.541925 7_2:-82747402 None:intergenic
TATCTTAGTCTATCAATACT+TGG 0.545113 7_2:+82748944 Msa1082640:three_prime_UTR
GTCGTTTCTCTTAAGCTACA+AGG 0.546334 7_2:+82747528 Msa1082640:CDS
AATTGCTACCTAGGTGGAGA+AGG 0.556964 7_2:-82748700 None:intergenic
TTTAAGTCCTATCAAATGAT+GGG 0.557737 7_2:-82748848 None:intergenic
GACTGTGTTGTGGAATATGT+TGG 0.562518 7_2:+82748609 Msa1082640:CDS
AGCAAGGGAAACAACGGTTG+AGG 0.563035 7_2:+82747668 Msa1082640:CDS
TGAAGGTGGTGACTGTGTTG+TGG 0.573198 7_2:+82748599 Msa1082640:CDS
AGCTTTAACACCTGATCCAA+TGG 0.583998 7_2:-82748640 None:intergenic
CTCCGTCAGAGATGAGGTAA+GGG 0.586257 7_2:-82747473 None:intergenic
ATTGAATTGAATTGCTACCT+AGG 0.588253 7_2:-82748709 None:intergenic
CGTTTCCTCCGTCAGAGATG+AGG 0.588496 7_2:-82747479 None:intergenic
CTCGTTACGCACCATAACTC+CGG 0.588702 7_2:+82747188 Msa1082640:CDS
CAATGTTACCTTCTCCACCT+AGG 0.589162 7_2:+82748692 Msa1082640:CDS
GGTTAGCGGTAGAGGATGAA+CGG 0.599940 7_2:-82747365 None:intergenic
ATAACCCAAAGCCCAAAACA+TGG 0.615780 7_2:+82747122 None:intergenic
TGTTTGATGATGATCAAGCA+AGG 0.620834 7_2:+82747652 Msa1082640:CDS
GTTTGATGATGATCAAGCAA+GGG 0.625912 7_2:+82747653 Msa1082640:CDS
CCTTACCTCATCTCTGACGG+AGG 0.627247 7_2:+82747474 Msa1082640:CDS
TCATCTAGAGATACTGAGAC+CGG 0.630070 7_2:+82748536 Msa1082640:CDS
ACACCTGATCCAATGGACTC+AGG 0.634250 7_2:-82748633 None:intergenic
GAATTGAATTGCTACCTAGG+TGG 0.663541 7_2:-82748706 None:intergenic
TGATCAAGCAAGGGAAACAA+CGG 0.689446 7_2:+82747662 Msa1082640:CDS
GATCGACGTTTGAAACGGTG+AGG 0.719915 7_2:-82747431 None:intergenic
AGAGGATGAACGGATTACTG+TGG 0.730832 7_2:-82747355 None:intergenic
GGTGAGGTCGAATTTCGTGG+CGG 0.777998 7_2:-82747415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTATTATTTATCTTTTA+TGG + chr7_2:82747719-82747738 Msa1082640:intron 10.0%
!!! TAACTATTATTTATCTTTTA+TGG + chr7_2:82747719-82747738 Msa1082640:intron 10.0%
!!! AATGTTTTTATAACCTATAT+TGG + chr7_2:82748000-82748019 Msa1082640:intron 15.0%
!!! AATGTTTTTATAACCTATAT+TGG + chr7_2:82748000-82748019 Msa1082640:intron 15.0%
!!! AAAAAGTATCTTATAATTCG+CGG + chr7_2:82747163-82747182 Msa1082640:CDS 20.0%
!! ATAGTTAAAGCAAAAAGTAA+GGG - chr7_2:82747706-82747725 None:intergenic 20.0%
!! AATAGTTAAAGCAAAAAGTA+AGG - chr7_2:82747707-82747726 None:intergenic 20.0%
!! ATATTAGTTAACATCATGAA+AGG - chr7_2:82747865-82747884 None:intergenic 20.0%
!! TTGGATAAATAACTTATTTG+CGG + chr7_2:82747900-82747919 Msa1082640:intron 20.0%
!!! TGATATTGTGAAATTGATTT+TGG - chr7_2:82748367-82748386 None:intergenic 20.0%
!!! AAAAAGTATCTTATAATTCG+CGG + chr7_2:82747163-82747182 Msa1082640:CDS 20.0%
!! ATAGTTAAAGCAAAAAGTAA+GGG - chr7_2:82747706-82747725 None:intergenic 20.0%
!! AATAGTTAAAGCAAAAAGTA+AGG - chr7_2:82747707-82747726 None:intergenic 20.0%
!! ATATTAGTTAACATCATGAA+AGG - chr7_2:82747865-82747884 None:intergenic 20.0%
!! TTGGATAAATAACTTATTTG+CGG + chr7_2:82747900-82747919 Msa1082640:intron 20.0%
!!! TGATATTGTGAAATTGATTT+TGG - chr7_2:82748367-82748386 None:intergenic 20.0%
!!! TATTTTTGAGTCCATGTTTT+GGG - chr7_2:82747136-82747155 None:intergenic 25.0%
!!! TTATTTTTGAGTCCATGTTT+TGG - chr7_2:82747137-82747156 None:intergenic 25.0%
! AAATTCAAATTCAGTTTCGT+TGG - chr7_2:82747255-82747274 None:intergenic 25.0%
! TAGTTAAAGCAAAAAGTAAG+GGG - chr7_2:82747705-82747724 None:intergenic 25.0%
!! CTTTTATGGTTGTTAATGAT+TGG + chr7_2:82747733-82747752 Msa1082640:intron 25.0%
! TGTTAACTAATATAGCAACT+AGG + chr7_2:82747872-82747891 Msa1082640:intron 25.0%
! TGAAACCAAACATAAACTTA+GGG - chr7_2:82748122-82748141 None:intergenic 25.0%
!!! TTCCTTTTTAAGCTAGAAAT+TGG + chr7_2:82748237-82748256 Msa1082640:intron 25.0%
! TTAGAATCAGTGTATGTTAT+TGG - chr7_2:82748423-82748442 None:intergenic 25.0%
!! ATGAATGTTAGTTGATGTTT+GGG + chr7_2:82748488-82748507 Msa1082640:intron 25.0%
! TTTAAGTCCTATCAAATGAT+GGG - chr7_2:82748851-82748870 None:intergenic 25.0%
! ATTTAAGTCCTATCAAATGA+TGG - chr7_2:82748852-82748871 None:intergenic 25.0%
! TATCTTAGTCTATCAATACT+TGG + chr7_2:82748944-82748963 Msa1082640:three_prime_UTR 25.0%
!!! TATTTTTGAGTCCATGTTTT+GGG - chr7_2:82747136-82747155 None:intergenic 25.0%
!!! TTATTTTTGAGTCCATGTTT+TGG - chr7_2:82747137-82747156 None:intergenic 25.0%
! AAATTCAAATTCAGTTTCGT+TGG - chr7_2:82747255-82747274 None:intergenic 25.0%
! TAGTTAAAGCAAAAAGTAAG+GGG - chr7_2:82747705-82747724 None:intergenic 25.0%
!! CTTTTATGGTTGTTAATGAT+TGG + chr7_2:82747733-82747752 Msa1082640:intron 25.0%
! TGTTAACTAATATAGCAACT+AGG + chr7_2:82747872-82747891 Msa1082640:intron 25.0%
! TGAAACCAAACATAAACTTA+GGG - chr7_2:82748122-82748141 None:intergenic 25.0%
!!! TTCCTTTTTAAGCTAGAAAT+TGG + chr7_2:82748237-82748256 Msa1082640:intron 25.0%
! TTAGAATCAGTGTATGTTAT+TGG - chr7_2:82748423-82748442 None:intergenic 25.0%
!! ATGAATGTTAGTTGATGTTT+GGG + chr7_2:82748488-82748507 Msa1082640:intron 25.0%
! TTTAAGTCCTATCAAATGAT+GGG - chr7_2:82748851-82748870 None:intergenic 25.0%
! ATTTAAGTCCTATCAAATGA+TGG - chr7_2:82748852-82748871 None:intergenic 25.0%
! TATCTTAGTCTATCAATACT+TGG + chr7_2:82748944-82748963 Msa1082640:three_prime_UTR 25.0%
! TTCGTTGGTATTGAACAAAT+TGG - chr7_2:82747240-82747259 None:intergenic 30.0%
!!! TGAGATTGTGTTGTTTTTGT+TGG - chr7_2:82747284-82747303 None:intergenic 30.0%
! GAAGTTCTTGAATTTTGCTT+TGG - chr7_2:82747333-82747352 None:intergenic 30.0%
TCAACCACAACTATGAAAAT+GGG + chr7_2:82747573-82747592 Msa1082640:CDS 30.0%
CCTTATAAGTTCTCCAATAT+AGG - chr7_2:82748016-82748035 None:intergenic 30.0%
CCTATATTGGAGAACTTATA+AGG + chr7_2:82748013-82748032 Msa1082640:intron 30.0%
GTGAAACCAAACATAAACTT+AGG - chr7_2:82748123-82748142 None:intergenic 30.0%
!!! CACACCTTTAAAATCACTTT+TGG - chr7_2:82748157-82748176 None:intergenic 30.0%
!! CAAAAGTGATTTTAAAGGTG+TGG + chr7_2:82748155-82748174 Msa1082640:intron 30.0%
TAAAAAGGAATCAATTCTGG+AGG - chr7_2:82748227-82748246 None:intergenic 30.0%
GCTTAAAAAGGAATCAATTC+TGG - chr7_2:82748230-82748249 None:intergenic 30.0%
!! CTCCAATTTCTAGCTTAAAA+AGG - chr7_2:82748242-82748261 None:intergenic 30.0%
! TTTGGTTAAAAGTGAGTTGA+AGG - chr7_2:82748349-82748368 None:intergenic 30.0%
! GATGAATGTTAGTTGATGTT+TGG + chr7_2:82748487-82748506 Msa1082640:intron 30.0%
AGACCGGCAATTAAAAATTA+CGG + chr7_2:82748552-82748571 Msa1082640:CDS 30.0%
AAGGTAACATTGAGAATATC+TGG - chr7_2:82748684-82748703 None:intergenic 30.0%
ATTGAATTGAATTGCTACCT+AGG - chr7_2:82748712-82748731 None:intergenic 30.0%
TCCTTCTTTCTGAATATAGT+TGG + chr7_2:82748804-82748823 Msa1082640:intron 30.0%
TCCAACTATATTCAGAAAGA+AGG - chr7_2:82748808-82748827 None:intergenic 30.0%
! TTCGTTGGTATTGAACAAAT+TGG - chr7_2:82747240-82747259 None:intergenic 30.0%
!!! TGAGATTGTGTTGTTTTTGT+TGG - chr7_2:82747284-82747303 None:intergenic 30.0%
! GAAGTTCTTGAATTTTGCTT+TGG - chr7_2:82747333-82747352 None:intergenic 30.0%
TCAACCACAACTATGAAAAT+GGG + chr7_2:82747573-82747592 Msa1082640:CDS 30.0%
CCTTATAAGTTCTCCAATAT+AGG - chr7_2:82748016-82748035 None:intergenic 30.0%
CCTATATTGGAGAACTTATA+AGG + chr7_2:82748013-82748032 Msa1082640:intron 30.0%
GTGAAACCAAACATAAACTT+AGG - chr7_2:82748123-82748142 None:intergenic 30.0%
!!! CACACCTTTAAAATCACTTT+TGG - chr7_2:82748157-82748176 None:intergenic 30.0%
!! CAAAAGTGATTTTAAAGGTG+TGG + chr7_2:82748155-82748174 Msa1082640:intron 30.0%
TAAAAAGGAATCAATTCTGG+AGG - chr7_2:82748227-82748246 None:intergenic 30.0%
GCTTAAAAAGGAATCAATTC+TGG - chr7_2:82748230-82748249 None:intergenic 30.0%
!! CTCCAATTTCTAGCTTAAAA+AGG - chr7_2:82748242-82748261 None:intergenic 30.0%
! TTTGGTTAAAAGTGAGTTGA+AGG - chr7_2:82748349-82748368 None:intergenic 30.0%
! GATGAATGTTAGTTGATGTT+TGG + chr7_2:82748487-82748506 Msa1082640:intron 30.0%
AGACCGGCAATTAAAAATTA+CGG + chr7_2:82748552-82748571 Msa1082640:CDS 30.0%
AAGGTAACATTGAGAATATC+TGG - chr7_2:82748684-82748703 None:intergenic 30.0%
ATTGAATTGAATTGCTACCT+AGG - chr7_2:82748712-82748731 None:intergenic 30.0%
TCCTTCTTTCTGAATATAGT+TGG + chr7_2:82748804-82748823 Msa1082640:intron 30.0%
TCCAACTATATTCAGAAAGA+AGG - chr7_2:82748808-82748827 None:intergenic 30.0%
GATGTTGTATCCGTTGAAAA+CGG + chr7_2:82747504-82747523 Msa1082640:CDS 35.0%
CTCAACCACAACTATGAAAA+TGG + chr7_2:82747572-82747591 Msa1082640:CDS 35.0%
! GATTCCCATTTTCATAGTTG+TGG - chr7_2:82747580-82747599 None:intergenic 35.0%
CGTGTTCTTAAGGAGAAATT+TGG + chr7_2:82747603-82747622 Msa1082640:CDS 35.0%
CACTTGCACGATATCTTTAA+TGG - chr7_2:82747634-82747653 None:intergenic 35.0%
!! TGTTTGATGATGATCAAGCA+AGG + chr7_2:82747652-82747671 Msa1082640:CDS 35.0%
!! GTTTGATGATGATCAAGCAA+GGG + chr7_2:82747653-82747672 Msa1082640:CDS 35.0%
ATATAGCAACTAGGTCTGTT+TGG + chr7_2:82747881-82747900 Msa1082640:intron 35.0%
! ATGTTTGGTTTCACTTCTAG+AGG + chr7_2:82748129-82748148 Msa1082640:intron 35.0%
! TGTTTGGTTTCACTTCTAGA+GGG + chr7_2:82748130-82748149 Msa1082640:intron 35.0%
GTTGAAGGTAAACTGAATGA+TGG - chr7_2:82748334-82748353 None:intergenic 35.0%
!! CCTCCGTAATTTTTAATTGC+CGG - chr7_2:82748558-82748577 None:intergenic 35.0%
!! GTGCAAGTTTTATCTGTTGA+AGG + chr7_2:82748582-82748601 Msa1082640:CDS 35.0%
!! CAAGTTTTATCTGTTGAAGG+TGG + chr7_2:82748585-82748604 Msa1082640:CDS 35.0%
CATAAGACCCATCATTTGAT+AGG + chr7_2:82748841-82748860 Msa1082640:intron 35.0%
GATGTTGTATCCGTTGAAAA+CGG + chr7_2:82747504-82747523 Msa1082640:CDS 35.0%
CTCAACCACAACTATGAAAA+TGG + chr7_2:82747572-82747591 Msa1082640:CDS 35.0%
! GATTCCCATTTTCATAGTTG+TGG - chr7_2:82747580-82747599 None:intergenic 35.0%
CGTGTTCTTAAGGAGAAATT+TGG + chr7_2:82747603-82747622 Msa1082640:CDS 35.0%
CACTTGCACGATATCTTTAA+TGG - chr7_2:82747634-82747653 None:intergenic 35.0%
!! TGTTTGATGATGATCAAGCA+AGG + chr7_2:82747652-82747671 Msa1082640:CDS 35.0%
!! GTTTGATGATGATCAAGCAA+GGG + chr7_2:82747653-82747672 Msa1082640:CDS 35.0%
ATATAGCAACTAGGTCTGTT+TGG + chr7_2:82747881-82747900 Msa1082640:intron 35.0%
! ATGTTTGGTTTCACTTCTAG+AGG + chr7_2:82748129-82748148 Msa1082640:intron 35.0%
! TGTTTGGTTTCACTTCTAGA+GGG + chr7_2:82748130-82748149 Msa1082640:intron 35.0%
GTTGAAGGTAAACTGAATGA+TGG - chr7_2:82748334-82748353 None:intergenic 35.0%
!! CCTCCGTAATTTTTAATTGC+CGG - chr7_2:82748558-82748577 None:intergenic 35.0%
!! GTGCAAGTTTTATCTGTTGA+AGG + chr7_2:82748582-82748601 Msa1082640:CDS 35.0%
!! CAAGTTTTATCTGTTGAAGG+TGG + chr7_2:82748585-82748604 Msa1082640:CDS 35.0%
CATAAGACCCATCATTTGAT+AGG + chr7_2:82748841-82748860 Msa1082640:intron 35.0%
AACGAGATCGACGTTTGAAA+CGG - chr7_2:82747439-82747458 None:intergenic 40.0%
GTCGTTTCTCTTAAGCTACA+AGG + chr7_2:82747528-82747547 Msa1082640:CDS 40.0%
TTCATAGTTGTGGTTGAGCT+AGG - chr7_2:82747570-82747589 None:intergenic 40.0%
TGATCAAGCAAGGGAAACAA+CGG + chr7_2:82747662-82747681 Msa1082640:CDS 40.0%
TCAGATACGCCAATTCAAAC+TGG + chr7_2:82748096-82748115 Msa1082640:intron 40.0%
AACTTAGGGCCAGTTTGAAT+TGG - chr7_2:82748108-82748127 None:intergenic 40.0%
ACTGGCCCTAAGTTTATGTT+TGG + chr7_2:82748114-82748133 Msa1082640:intron 40.0%
! GTTTGGTTTCACTTCTAGAG+GGG + chr7_2:82748131-82748150 Msa1082640:intron 40.0%
! GGGGCCAAAAGTGATTTTAA+AGG + chr7_2:82748150-82748169 Msa1082640:intron 40.0%
! TGTTAGTTGATGTTTGGGTG+TGG + chr7_2:82748493-82748512 Msa1082640:intron 40.0%
! GTTAGTTGATGTTTGGGTGT+GGG + chr7_2:82748494-82748513 Msa1082640:intron 40.0%
!!! TGTTTGGGTGTGGGTTTTTT+AGG + chr7_2:82748503-82748522 Msa1082640:intron 40.0%
TCATCTAGAGATACTGAGAC+CGG + chr7_2:82748536-82748555 Msa1082640:CDS 40.0%
CCGGCAATTAAAAATTACGG+AGG + chr7_2:82748555-82748574 Msa1082640:CDS 40.0%
GACTGTGTTGTGGAATATGT+TGG + chr7_2:82748609-82748628 Msa1082640:CDS 40.0%
! AGCTTTAACACCTGATCCAA+TGG - chr7_2:82748643-82748662 None:intergenic 40.0%
GAATTGAATTGCTACCTAGG+TGG - chr7_2:82748709-82748728 None:intergenic 40.0%
AACGAGATCGACGTTTGAAA+CGG - chr7_2:82747439-82747458 None:intergenic 40.0%
GTCGTTTCTCTTAAGCTACA+AGG + chr7_2:82747528-82747547 Msa1082640:CDS 40.0%
TTCATAGTTGTGGTTGAGCT+AGG - chr7_2:82747570-82747589 None:intergenic 40.0%
TGATCAAGCAAGGGAAACAA+CGG + chr7_2:82747662-82747681 Msa1082640:CDS 40.0%
TCAGATACGCCAATTCAAAC+TGG + chr7_2:82748096-82748115 Msa1082640:intron 40.0%
AACTTAGGGCCAGTTTGAAT+TGG - chr7_2:82748108-82748127 None:intergenic 40.0%
ACTGGCCCTAAGTTTATGTT+TGG + chr7_2:82748114-82748133 Msa1082640:intron 40.0%
! GTTTGGTTTCACTTCTAGAG+GGG + chr7_2:82748131-82748150 Msa1082640:intron 40.0%
! GGGGCCAAAAGTGATTTTAA+AGG + chr7_2:82748150-82748169 Msa1082640:intron 40.0%
! TGTTAGTTGATGTTTGGGTG+TGG + chr7_2:82748493-82748512 Msa1082640:intron 40.0%
! GTTAGTTGATGTTTGGGTGT+GGG + chr7_2:82748494-82748513 Msa1082640:intron 40.0%
!!! TGTTTGGGTGTGGGTTTTTT+AGG + chr7_2:82748503-82748522 Msa1082640:intron 40.0%
TCATCTAGAGATACTGAGAC+CGG + chr7_2:82748536-82748555 Msa1082640:CDS 40.0%
CCGGCAATTAAAAATTACGG+AGG + chr7_2:82748555-82748574 Msa1082640:CDS 40.0%
GACTGTGTTGTGGAATATGT+TGG + chr7_2:82748609-82748628 Msa1082640:CDS 40.0%
! AGCTTTAACACCTGATCCAA+TGG - chr7_2:82748643-82748662 None:intergenic 40.0%
GAATTGAATTGCTACCTAGG+TGG - chr7_2:82748709-82748728 None:intergenic 40.0%
!! AGAGGATGAACGGATTACTG+TGG - chr7_2:82747358-82747377 None:intergenic 45.0%
!! AGAAGACTGGTTCTGGTTAG+CGG - chr7_2:82747382-82747401 None:intergenic 45.0%
TAACCAGAACCAGTCTTCTC+CGG + chr7_2:82747383-82747402 Msa1082640:CDS 45.0%
AGTATAATCCCGGAGAAGAC+TGG - chr7_2:82747395-82747414 None:intergenic 45.0%
!! AGAAACGACGCCGTTTTCAA+CGG - chr7_2:82747517-82747536 None:intergenic 45.0%
GGGAATCGAACGTGTTCTTA+AGG + chr7_2:82747593-82747612 Msa1082640:CDS 45.0%
GAGCTCATCAATTGGCGTTT+GGG - chr7_2:82748078-82748097 None:intergenic 45.0%
TGAGCTCATCAATTGGCGTT+TGG - chr7_2:82748079-82748098 None:intergenic 45.0%
GCGTATCTGAGCTCATCAAT+TGG - chr7_2:82748086-82748105 None:intergenic 45.0%
!!! TTGGGTGTGGGTTTTTTAGG+CGG + chr7_2:82748506-82748525 Msa1082640:intron 45.0%
TATGTTGGACCTGAGTCCAT+TGG + chr7_2:82748624-82748643 Msa1082640:CDS 45.0%
AGGTGTTAAAGCTGCGATCA+AGG + chr7_2:82748650-82748669 Msa1082640:CDS 45.0%
CAATGTTACCTTCTCCACCT+AGG + chr7_2:82748692-82748711 Msa1082640:CDS 45.0%
AATTGCTACCTAGGTGGAGA+AGG - chr7_2:82748703-82748722 None:intergenic 45.0%
!! AGAGGATGAACGGATTACTG+TGG - chr7_2:82747358-82747377 None:intergenic 45.0%
!! AGAAGACTGGTTCTGGTTAG+CGG - chr7_2:82747382-82747401 None:intergenic 45.0%
TAACCAGAACCAGTCTTCTC+CGG + chr7_2:82747383-82747402 Msa1082640:CDS 45.0%
AGTATAATCCCGGAGAAGAC+TGG - chr7_2:82747395-82747414 None:intergenic 45.0%
!! AGAAACGACGCCGTTTTCAA+CGG - chr7_2:82747517-82747536 None:intergenic 45.0%
GGGAATCGAACGTGTTCTTA+AGG + chr7_2:82747593-82747612 Msa1082640:CDS 45.0%
GAGCTCATCAATTGGCGTTT+GGG - chr7_2:82748078-82748097 None:intergenic 45.0%
TGAGCTCATCAATTGGCGTT+TGG - chr7_2:82748079-82748098 None:intergenic 45.0%
GCGTATCTGAGCTCATCAAT+TGG - chr7_2:82748086-82748105 None:intergenic 45.0%
!!! TTGGGTGTGGGTTTTTTAGG+CGG + chr7_2:82748506-82748525 Msa1082640:intron 45.0%
TATGTTGGACCTGAGTCCAT+TGG + chr7_2:82748624-82748643 Msa1082640:CDS 45.0%
AGGTGTTAAAGCTGCGATCA+AGG + chr7_2:82748650-82748669 Msa1082640:CDS 45.0%
CAATGTTACCTTCTCCACCT+AGG + chr7_2:82748692-82748711 Msa1082640:CDS 45.0%
AATTGCTACCTAGGTGGAGA+AGG - chr7_2:82748703-82748722 None:intergenic 45.0%
CTCGTTACGCACCATAACTC+CGG + chr7_2:82747188-82747207 Msa1082640:CDS 50.0%
TGATGGAGCTTCCGGAGTTA+TGG - chr7_2:82747202-82747221 None:intergenic 50.0%
AACTCCGGAAGCTCCATCAA+TGG + chr7_2:82747203-82747222 Msa1082640:CDS 50.0%
GGAGTTAGAGTCGCCATTGA+TGG - chr7_2:82747219-82747238 None:intergenic 50.0%
GGTTAGCGGTAGAGGATGAA+CGG - chr7_2:82747368-82747387 None:intergenic 50.0%
AACCAGAACCAGTCTTCTCC+GGG + chr7_2:82747384-82747403 Msa1082640:CDS 50.0%
! TTCGTGGCGGAGTATAATCC+CGG - chr7_2:82747405-82747424 None:intergenic 50.0%
AACGGTGAGGTCGAATTTCG+TGG - chr7_2:82747421-82747440 None:intergenic 50.0%
! GATCGACGTTTGAAACGGTG+AGG - chr7_2:82747434-82747453 None:intergenic 50.0%
CTCCGTCAGAGATGAGGTAA+GGG - chr7_2:82747476-82747495 None:intergenic 50.0%
AGCAAGGGAAACAACGGTTG+AGG + chr7_2:82747668-82747687 Msa1082640:CDS 50.0%
TGAAGGTGGTGACTGTGTTG+TGG + chr7_2:82748599-82748618 Msa1082640:CDS 50.0%
! ACACCTGATCCAATGGACTC+AGG - chr7_2:82748636-82748655 None:intergenic 50.0%
CTCGTTACGCACCATAACTC+CGG + chr7_2:82747188-82747207 Msa1082640:CDS 50.0%
TGATGGAGCTTCCGGAGTTA+TGG - chr7_2:82747202-82747221 None:intergenic 50.0%
AACTCCGGAAGCTCCATCAA+TGG + chr7_2:82747203-82747222 Msa1082640:CDS 50.0%
GGAGTTAGAGTCGCCATTGA+TGG - chr7_2:82747219-82747238 None:intergenic 50.0%
GGTTAGCGGTAGAGGATGAA+CGG - chr7_2:82747368-82747387 None:intergenic 50.0%
AACCAGAACCAGTCTTCTCC+GGG + chr7_2:82747384-82747403 Msa1082640:CDS 50.0%
! TTCGTGGCGGAGTATAATCC+CGG - chr7_2:82747405-82747424 None:intergenic 50.0%
AACGGTGAGGTCGAATTTCG+TGG - chr7_2:82747421-82747440 None:intergenic 50.0%
! GATCGACGTTTGAAACGGTG+AGG - chr7_2:82747434-82747453 None:intergenic 50.0%
CTCCGTCAGAGATGAGGTAA+GGG - chr7_2:82747476-82747495 None:intergenic 50.0%
AGCAAGGGAAACAACGGTTG+AGG + chr7_2:82747668-82747687 Msa1082640:CDS 50.0%
TGAAGGTGGTGACTGTGTTG+TGG + chr7_2:82748599-82748618 Msa1082640:CDS 50.0%
! ACACCTGATCCAATGGACTC+AGG - chr7_2:82748636-82748655 None:intergenic 50.0%
GTCGCCATTGATGGAGCTTC+CGG - chr7_2:82747210-82747229 None:intergenic 55.0%
!! CTGGTTCTGGTTAGCGGTAG+AGG - chr7_2:82747376-82747395 None:intergenic 55.0%
! ATCCCGGAGAAGACTGGTTC+TGG - chr7_2:82747389-82747408 None:intergenic 55.0%
GGTGAGGTCGAATTTCGTGG+CGG - chr7_2:82747418-82747437 None:intergenic 55.0%
CGCCCTTACCTCATCTCTGA+CGG + chr7_2:82747471-82747490 Msa1082640:CDS 55.0%
CCTCCGTCAGAGATGAGGTA+AGG - chr7_2:82747477-82747496 None:intergenic 55.0%
CCTTACCTCATCTCTGACGG+AGG + chr7_2:82747474-82747493 Msa1082640:CDS 55.0%
CGTTTCCTCCGTCAGAGATG+AGG - chr7_2:82747482-82747501 None:intergenic 55.0%
GGACCTGAGTCCATTGGATC+AGG + chr7_2:82748630-82748649 Msa1082640:CDS 55.0%
GTCGCCATTGATGGAGCTTC+CGG - chr7_2:82747210-82747229 None:intergenic 55.0%
!! CTGGTTCTGGTTAGCGGTAG+AGG - chr7_2:82747376-82747395 None:intergenic 55.0%
! ATCCCGGAGAAGACTGGTTC+TGG - chr7_2:82747389-82747408 None:intergenic 55.0%
GGTGAGGTCGAATTTCGTGG+CGG - chr7_2:82747418-82747437 None:intergenic 55.0%
CGCCCTTACCTCATCTCTGA+CGG + chr7_2:82747471-82747490 Msa1082640:CDS 55.0%
CCTCCGTCAGAGATGAGGTA+AGG - chr7_2:82747477-82747496 None:intergenic 55.0%
CCTTACCTCATCTCTGACGG+AGG + chr7_2:82747474-82747493 Msa1082640:CDS 55.0%
CGTTTCCTCCGTCAGAGATG+AGG - chr7_2:82747482-82747501 None:intergenic 55.0%
GGACCTGAGTCCATTGGATC+AGG + chr7_2:82748630-82748649 Msa1082640:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 82747129 82748972 82747129 ID=Msa1082640;Name=Msa1082640
chr7_2 mRNA 82747129 82748972 82747129 ID=Msa1082640-mRNA-1;Parent=Msa1082640;Name=Msa1082640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=12|1|1|1|0.5|0.33|3|213|245
chr7_2 exon 82747129 82747689 82747129 ID=Msa1082640-mRNA-1:exon:21512;Parent=Msa1082640-mRNA-1
chr7_2 exon 82748525 82748795 82748525 ID=Msa1082640-mRNA-1:exon:21513;Parent=Msa1082640-mRNA-1
chr7_2 exon 82748842 82748972 82748842 ID=Msa1082640-mRNA-1:exon:21514;Parent=Msa1082640-mRNA-1
chr7_2 five_prime_UTR 82747129 82747140 82747129 ID=Msa1082640-mRNA-1:five_prime_utr;Parent=Msa1082640-mRNA-1
chr7_2 CDS 82747141 82747689 82747141 ID=Msa1082640-mRNA-1:cds;Parent=Msa1082640-mRNA-1
chr7_2 CDS 82748525 82748713 82748525 ID=Msa1082640-mRNA-1:cds;Parent=Msa1082640-mRNA-1
chr7_2 three_prime_UTR 82748714 82748795 82748714 ID=Msa1082640-mRNA-1:three_prime_utr;Parent=Msa1082640-mRNA-1
chr7_2 three_prime_UTR 82748842 82748972 82748842 ID=Msa1082640-mRNA-1:three_prime_utr;Parent=Msa1082640-mRNA-1
Gene Sequence

>Msa1082640

ATGGACTCAAAAATAAAAAATAAAAAAGTATCTTATAATTCGCGGTGCTCGTTACGCACCATAACTCCGGAAGCTCCATCAATGGCGACTCTAACTCCAATTTGTTCAATACCAACGAAACTGAATTTGAATTTGAGTATCCAACAAAAACAACACAATCTCAACTTCGCACTTTTCAATTTCAAAAATCCAAAGCAAAATTCAAGAACTTCAACCACAGTAATCCGTTCATCCTCTACCGCTAACCAGAACCAGTCTTCTCCGGGATTATACTCCGCCACGAAATTCGACCTCACCGTTTCAAACGTCGATCTCGTTCTCGAAGATGTTCGCCCTTACCTCATCTCTGACGGAGGAAACGTCGATGTTGTATCCGTTGAAAACGGCGTCGTTTCTCTTAAGCTACAAGGTGCATGCGAAAGTTGTCCTAGCTCAACCACAACTATGAAAATGGGAATCGAACGTGTTCTTAAGGAGAAATTTGGAGATTCCATTAAAGATATCGTGCAAGTGTTTGATGATGATCAAGCAAGGGAAACAACGGTTGAGGCGGTGAACAATCATCTAGAGATACTGAGACCGGCAATTAAAAATTACGGAGGTAGTGTGCAAGTTTTATCTGTTGAAGGTGGTGACTGTGTTGTGGAATATGTTGGACCTGAGTCCATTGGATCAGGTGTTAAAGCTGCGATCAAGGAGAAGTTTCCAGATATTCTCAATGTTACCTTCTCCACCTAG

Protein sequence

>Msa1082640

MDSKIKNKKVSYNSRCSLRTITPEAPSMATLTPICSIPTKLNLNLSIQQKQHNLNFALFNFKNPKQNSRTSTTVIRSSSTANQNQSSPGLYSATKFDLTVSNVDLVLEDVRPYLISDGGNVDVVSVENGVVSLKLQGACESCPSSTTTMKMGIERVLKEKFGDSIKDIVQVFDDDQARETTVEAVNNHLEILRPAIKNYGGSVQVLSVEGGDCVVEYVGPESIGSGVKAAIKEKFPDILNVTFST*