Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356740 | XP_003611069.2 | 98.367 | 490 | 6 | 2 | 1 | 489 | 1 | 489 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356740 | G7KC11 | 98.367 | 490 | 6 | 2 | 1 | 489 | 1 | 489 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa1356740 | 0.807673 | 4.506848e-50 | -8.615850e-47 |
| Msa1349630 | Msa1356740 | 0.803157 | 3.986335e-49 | -8.615850e-47 |
| Msa1356740 | Msa1374550 | 0.809368 | 1.958531e-50 | -8.615850e-47 |
| Msa0637560 | Msa1356740 | 0.809866 | 1.531063e-50 | -8.615850e-47 |
| Msa0637580 | Msa1356740 | 0.800736 | 1.252808e-48 | -8.615850e-47 |
| Msa0669840 | Msa1356740 | 0.826002 | 3.445639e-54 | -8.615850e-47 |
| Msa0392420 | Msa1356740 | 0.821434 | 4.045121e-53 | -8.615850e-47 |
| Msa0392460 | Msa1356740 | 0.816490 | 5.383988e-52 | -8.615850e-47 |
| Msa0392490 | Msa1356740 | 0.821897 | 3.162445e-53 | -8.615850e-47 |
| Msa0406000 | Msa1356740 | 0.819971 | 8.776902e-53 | -8.615850e-47 |
| Msa0415320 | Msa1356740 | 0.810842 | 9.425374e-51 | -8.615850e-47 |
| Msa0424350 | Msa1356740 | 0.801309 | 9.570314e-49 | -8.615850e-47 |
| Msa0451400 | Msa1356740 | 0.827547 | 1.472830e-54 | -8.615850e-47 |
| Msa0344570 | Msa1356740 | 0.815213 | 1.037111e-51 | -8.615850e-47 |
| Msa0359250 | Msa1356740 | 0.813264 | 2.795456e-51 | -8.615850e-47 |
| Msa0487570 | Msa1356740 | 0.826397 | 2.773881e-54 | -8.615850e-47 |
| Msa0487630 | Msa1356740 | 0.826322 | 2.891656e-54 | -8.615850e-47 |
| Msa0492190 | Msa1356740 | 0.819924 | 8.995251e-53 | -8.615850e-47 |
| Msa0523000 | Msa1356740 | 0.800266 | 1.562168e-48 | -8.615850e-47 |
| Msa0534930 | Msa1356740 | 0.832253 | 1.050256e-55 | -8.615850e-47 |
| Msa0535040 | Msa1356740 | 0.831934 | 1.259603e-55 | -8.615850e-47 |
| Msa0591790 | Msa1356740 | 0.835463 | 1.653356e-56 | -8.615850e-47 |
| Msa0936410 | Msa1356740 | 0.805235 | 1.472282e-49 | -8.615850e-47 |
| Msa0941820 | Msa1356740 | 0.802074 | 6.665668e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356740 | MtrunA17_Chr8g0387371 | 79.614 | 466 | 83 | 4 | 35 | 489 | 49 | 513 | 0.0 | 790 |
| Msa1356740 | MtrunA17_Chr8g0348511 | 63.542 | 480 | 164 | 5 | 19 | 489 | 8 | 485 | 0.0 | 650 |
| Msa1356740 | MtrunA17_Chr2g0327551 | 66.259 | 409 | 137 | 1 | 81 | 489 | 45 | 452 | 0.0 | 609 |
| Msa1356740 | MtrunA17_Chr4g0030331 | 67.102 | 383 | 125 | 1 | 76 | 458 | 102 | 483 | 0.0 | 579 |
| Msa1356740 | MtrunA17_Chr5g0397301 | 96.194 | 289 | 8 | 2 | 1 | 286 | 1 | 289 | 0.0 | 568 |
| Msa1356740 | MtrunA17_Chr5g0397311 | 98.104 | 211 | 3 | 1 | 279 | 489 | 21 | 230 | 7.13e-155 | 441 |
| Msa1356740 | MtrunA17_Chr7g0239421 | 46.914 | 405 | 187 | 5 | 81 | 470 | 92 | 483 | 1.70e-127 | 381 |
| Msa1356740 | MtrunA17_Chr3g0112211 | 45.775 | 426 | 210 | 7 | 72 | 495 | 73 | 479 | 1.48e-124 | 373 |
| Msa1356740 | MtrunA17_Chr4g0024001 | 43.602 | 422 | 225 | 6 | 70 | 489 | 63 | 473 | 1.63e-123 | 370 |
| Msa1356740 | MtrunA17_Chr5g0395861 | 43.294 | 425 | 231 | 4 | 71 | 489 | 115 | 535 | 1.36e-122 | 370 |
| Msa1356740 | MtrunA17_Chr4g0023991 | 46.778 | 419 | 211 | 7 | 81 | 493 | 63 | 475 | 8.21e-114 | 345 |
| Msa1356740 | MtrunA17_Chr2g0322991 | 42.824 | 425 | 230 | 6 | 76 | 492 | 52 | 471 | 6.03e-99 | 307 |
| Msa1356740 | MtrunA17_Chr7g0248241 | 54.196 | 286 | 117 | 5 | 6 | 279 | 8 | 291 | 2.06e-94 | 290 |
| Msa1356740 | MtrunA17_Chr7g0248231 | 63.978 | 186 | 59 | 2 | 279 | 461 | 3 | 183 | 2.69e-82 | 254 |
| Msa1356740 | MtrunA17_Chr2g0284301 | 61.702 | 47 | 18 | 0 | 221 | 267 | 1 | 47 | 7.56e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356740 | AT4G23490.1 | 70.287 | 488 | 120 | 4 | 26 | 489 | 35 | 521 | 0.0 | 717 |
| Msa1356740 | AT5G41460.1 | 69.512 | 492 | 121 | 6 | 25 | 489 | 30 | 519 | 0.0 | 710 |
| Msa1356740 | AT4G11350.1 | 68.944 | 483 | 135 | 5 | 20 | 489 | 22 | 502 | 0.0 | 707 |
| Msa1356740 | AT1G01570.1 | 57.263 | 475 | 183 | 8 | 28 | 489 | 4 | 471 | 0.0 | 563 |
| Msa1356740 | AT1G01570.2 | 57.263 | 475 | 183 | 8 | 28 | 489 | 35 | 502 | 0.0 | 563 |
| Msa1356740 | AT1G07850.1 | 64.634 | 410 | 143 | 2 | 81 | 489 | 123 | 531 | 0.0 | 546 |
| Msa1356740 | AT4G00295.1 | 54.176 | 443 | 185 | 7 | 31 | 460 | 30 | 467 | 6.81e-170 | 488 |
| Msa1356740 | AT2G37730.1 | 43.725 | 494 | 255 | 10 | 9 | 484 | 14 | 502 | 7.67e-142 | 419 |
| Msa1356740 | AT4G11350.2 | 65.957 | 282 | 80 | 5 | 20 | 288 | 22 | 300 | 3.62e-123 | 363 |
| Msa1356740 | AT1G33250.1 | 42.787 | 409 | 225 | 3 | 83 | 485 | 131 | 536 | 2.74e-120 | 365 |
| Msa1356740 | AT4G15240.1 | 44.496 | 427 | 216 | 9 | 70 | 489 | 70 | 482 | 1.04e-118 | 358 |
| Msa1356740 | AT1G05280.1 | 42.824 | 425 | 226 | 9 | 81 | 492 | 68 | 488 | 9.64e-117 | 353 |
| Msa1356740 | AT3G11420.1 | 37.712 | 472 | 279 | 8 | 27 | 490 | 40 | 504 | 4.62e-110 | 337 |
| Msa1356740 | AT1G05280.2 | 43.669 | 387 | 204 | 7 | 81 | 457 | 68 | 450 | 1.09e-107 | 329 |
| Msa1356740 | AT5G12460.1 | 37.784 | 352 | 208 | 6 | 81 | 428 | 36 | 380 | 1.71e-81 | 261 |
Find 123 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGGTATCCTGGTCTTTA+TGG | 0.131938 | tig0015859:-22545 | Msa1356740:CDS |
| CTTCAAGAACATTTCTTAAT+TGG | 0.163109 | tig0015859:-19739 | Msa1356740:CDS |
| TTTCCGAGACATTGCGTTTA+GGG | 0.264696 | tig0015859:-22802 | Msa1356740:CDS |
| AGAAGCCAGACCCGCATCTA+TGG | 0.284136 | tig0015859:-19499 | Msa1356740:CDS |
| TTGTGACGGATAATTTGATT+AGG | 0.320319 | tig0015859:-22733 | Msa1356740:CDS |
| TCCGGAATGCCGATGGAAAA+TGG | 0.320425 | tig0015859:-19558 | Msa1356740:CDS |
| GATGGACCATTTCAGTTTCA+TGG | 0.324965 | tig0015859:-19817 | Msa1356740:CDS |
| GCTTCCACTCTTGTGGCATT+CGG | 0.338017 | tig0015859:+19920 | None:intergenic |
| GTTTCCGAGACATTGCGTTT+AGG | 0.338886 | tig0015859:-22803 | Msa1356740:CDS |
| GAGTGGTGATTGATGGAAAA+TGG | 0.347760 | tig0015859:+23274 | None:intergenic |
| TGACACGGGTGTCGAGTAAC+AGG | 0.350943 | tig0015859:+19674 | None:intergenic |
| AGAAAATGAGAGGAATAGTA+TGG | 0.352306 | tig0015859:-22952 | Msa1356740:CDS |
| CTTCCACTCTTGTGGCATTC+GGG | 0.358383 | tig0015859:+19921 | None:intergenic |
| TGTGACGGATAATTTGATTA+GGG | 0.365212 | tig0015859:-22732 | Msa1356740:CDS |
| TTGCAGCCTCATCAAAACTT+TGG | 0.368767 | tig0015859:-23174 | Msa1356740:CDS |
| GCCGTGTTGTACTCAAGGTC+CGG | 0.374835 | tig0015859:+18414 | None:intergenic |
| GATGTGTATGGGAACCTATT+TGG | 0.375233 | tig0015859:-20013 | Msa1356740:CDS |
| CTGGTGAAAACCGATTTCTT+TGG | 0.375358 | tig0015859:+22472 | None:intergenic |
| ATGTGTATGGGAACCTATTT+GGG | 0.377930 | tig0015859:-20012 | Msa1356740:CDS |
| TGCAGCCTCATCAAAACTTT+GGG | 0.381822 | tig0015859:-23173 | Msa1356740:CDS |
| GGTGGATTTGCAATTAGTTA+TGG | 0.395771 | tig0015859:-22608 | Msa1356740:CDS |
| CTTGTGGCATTCGGGAAGAT+TGG | 0.406308 | tig0015859:+19929 | None:intergenic |
| ATTTGCAATTAGTTATGGTT+TGG | 0.407855 | tig0015859:-22603 | Msa1356740:CDS |
| TTTGAGAGTGTAAATGAAGT+AGG | 0.408544 | tig0015859:+23330 | None:intergenic |
| AGTGATACCAATGGAGTTAC+TGG | 0.408585 | tig0015859:+19974 | None:intergenic |
| TGACCTTGTTTGTTTGTGTA+TGG | 0.409139 | tig0015859:+22854 | None:intergenic |
| CGAGCTTCATTGGTATTGTA+AGG | 0.413132 | tig0015859:+19888 | None:intergenic |
| CTATCCCATAGATGCGGGTC+TGG | 0.414842 | tig0015859:+19494 | None:intergenic |
| CCGTGTTGTACTCAAGGTCC+GGG | 0.419219 | tig0015859:+18415 | None:intergenic |
| CCGGTGGTAGACCTTCGTTC+AGG | 0.419748 | tig0015859:+22906 | None:intergenic |
| GGAATGGCTTATGGTGGTGG+TGG | 0.420801 | tig0015859:-22626 | Msa1356740:CDS |
| GCTGTTTGCTGCATTGATGC+TGG | 0.432476 | tig0015859:+23249 | None:intergenic |
| GAAAGAACTACATAAAACTA+TGG | 0.434845 | tig0015859:-23144 | Msa1356740:intron |
| GTTCCACTTACCAAAGAAAT+CGG | 0.436793 | tig0015859:-22482 | Msa1356740:CDS |
| GAGCTGCAAGAAGCCCAAAT+AGG | 0.439253 | tig0015859:+19999 | None:intergenic |
| TTCCATCGGCATTCCGGATG+AGG | 0.443194 | tig0015859:+19563 | None:intergenic |
| TATGGAATGGCTTATGGTGG+TGG | 0.444530 | tig0015859:-22629 | Msa1356740:CDS |
| CCTGCTGAGTCGAGCTTCAT+TGG | 0.447499 | tig0015859:+19878 | None:intergenic |
| TGATCGAATGCAAGCTTGTA+TGG | 0.456256 | tig0015859:-22516 | Msa1356740:CDS |
| TTGGAACAGTATGATGTGTA+TGG | 0.457109 | tig0015859:-20025 | Msa1356740:intron |
| TTTGAAAGGTAAAACACAAA+AGG | 0.457164 | tig0015859:+19647 | None:intergenic |
| CAATTAAGAAATGTTCTTGA+AGG | 0.458016 | tig0015859:+19740 | None:intergenic |
| AAAGCATCGTGTTCCTCATC+CGG | 0.458774 | tig0015859:-19576 | Msa1356740:CDS |
| AAACCGATTTCTTTGGTAAG+TGG | 0.461290 | tig0015859:+22479 | None:intergenic |
| TGCAGGATCGTTGTATTCAT+AGG | 0.462057 | tig0015859:-22562 | Msa1356740:CDS |
| GTCAAATAAGAAAGGAAGAA+TGG | 0.462182 | tig0015859:-19147 | Msa1356740:CDS |
| GCTGGAAGAGTGGTGATTGA+TGG | 0.466330 | tig0015859:+23267 | None:intergenic |
| ATGGACCATTTCAGTTTCAT+GGG | 0.472620 | tig0015859:-19816 | Msa1356740:CDS |
| GTGTGGGATTCACTAAGGTT+GGG | 0.481023 | tig0015859:+23419 | None:intergenic |
| AAAACCCCATGAAACTGAAA+TGG | 0.481667 | tig0015859:+19811 | None:intergenic |
| AGGAAGAATGGTGATGGATG+TGG | 0.482118 | tig0015859:-19135 | Msa1356740:CDS |
| CGTTGTATTCATAGGTATCC+TGG | 0.489757 | tig0015859:-22554 | Msa1356740:CDS |
| TGTGTGGGATTCACTAAGGT+TGG | 0.492478 | tig0015859:+23418 | None:intergenic |
| AACAATGCGTGAGATTCTAA+TGG | 0.495795 | tig0015859:+22823 | None:intergenic |
| AGTGTTCTTAGATAAAACTT+TGG | 0.498687 | tig0015859:+18379 | None:intergenic |
| AGATGTGCGGTGGTTTGTGA+TGG | 0.499680 | tig0015859:-22774 | Msa1356740:CDS |
| TGAAGGCATTTCAATTTCGC+GGG | 0.500204 | tig0015859:+19757 | None:intergenic |
| CAAGCTTGTATGGCTGAACT+TGG | 0.501075 | tig0015859:-22506 | Msa1356740:CDS |
| TTCCTCATCCGGAATGCCGA+TGG | 0.506157 | tig0015859:-19565 | Msa1356740:CDS |
| ACTCTGCAACAGTTTCTCCT+TGG | 0.509895 | tig0015859:+19176 | None:intergenic |
| TTGTTGTGTGGGATTCACTA+AGG | 0.511560 | tig0015859:+23414 | None:intergenic |
| TTGAAGTGCTTCCACTCTTG+TGG | 0.515143 | tig0015859:+19913 | None:intergenic |
| TGTGAAGGTCGTTGTTGTGT+GGG | 0.521879 | tig0015859:+23403 | None:intergenic |
| GAGCTCCGGCATGTAGTGTT+CGG | 0.524859 | tig0015859:-23199 | Msa1356740:CDS |
| AATATTATTGGCAGGCTCCA+AGG | 0.525266 | tig0015859:-19193 | Msa1356740:intron |
| GTGATGAAGTCAAATAAGAA+AGG | 0.526638 | tig0015859:-19155 | Msa1356740:CDS |
| CATTACAAAAGGAGGAATGA+TGG | 0.530218 | tig0015859:-18465 | Msa1356740:CDS |
| GATGTGGGTATATGTAAAGA+TGG | 0.530359 | tig0015859:-19119 | Msa1356740:CDS |
| TTGAAGGCATTTCAATTTCG+CGG | 0.531589 | tig0015859:+19756 | None:intergenic |
| GAAGCCAGACCCGCATCTAT+GGG | 0.535021 | tig0015859:-19498 | Msa1356740:CDS |
| CTTCTAAAAGAACCGAGCTC+CGG | 0.536873 | tig0015859:-23213 | Msa1356740:CDS |
| GACCTTGAGTACAACACGGC+AGG | 0.539934 | tig0015859:-18411 | Msa1356740:CDS |
| ATGTGAAGGTCGTTGTTGTG+TGG | 0.544002 | tig0015859:+23402 | None:intergenic |
| TTGTTCAGGAACATTACAAA+AGG | 0.544140 | tig0015859:-18476 | Msa1356740:intron |
| AATGAGAGGAATAGTATGGA+TGG | 0.544772 | tig0015859:-22948 | Msa1356740:CDS |
| TTCAGGAACATTACAAAAGG+AGG | 0.546626 | tig0015859:-18473 | Msa1356740:intron |
| TTTGCTGTTCAGATATTTCG+CGG | 0.549173 | tig0015859:-19791 | Msa1356740:CDS |
| ACACAAAAGGCTTCTGACAC+GGG | 0.550493 | tig0015859:+19660 | None:intergenic |
| TGCCTGCCGTGTTGTACTCA+AGG | 0.552791 | tig0015859:+18409 | None:intergenic |
| ATGGTTGCAATTGCTTGAAG+TGG | 0.552924 | tig0015859:+23300 | None:intergenic |
| TAAGAAAGGAAGAATGGTGA+TGG | 0.553453 | tig0015859:-19141 | Msa1356740:CDS |
| AACACAAAAGGCTTCTGACA+CGG | 0.555456 | tig0015859:+19659 | None:intergenic |
| AAGCCCTAAACGCAATGTCT+CGG | 0.559380 | tig0015859:+22799 | None:intergenic |
| GGAAGAATGGTGATGGATGT+GGG | 0.564471 | tig0015859:-19134 | Msa1356740:CDS |
| GTTACGACAAAGAAAAGAGA+TGG | 0.565849 | tig0015859:-19835 | Msa1356740:CDS |
| ACTTCAAGCAATTGCAACCA+TGG | 0.573920 | tig0015859:-23298 | Msa1356740:CDS |
| GAACACTACATGCCGGAGCT+CGG | 0.575438 | tig0015859:+23201 | None:intergenic |
| AGCTCATCCAGTAACTCCAT+TGG | 0.575487 | tig0015859:-19981 | Msa1356740:CDS |
| GTACTCTATCCCATAGATGC+GGG | 0.590294 | tig0015859:+19489 | None:intergenic |
| CCAATGAAGCTCGACTCAGC+AGG | 0.595651 | tig0015859:-19878 | Msa1356740:CDS |
| AAAAGCTCTAGTGAAAATGC+AGG | 0.596632 | tig0015859:-22579 | Msa1356740:CDS |
| TCTTATGGAATGGCTTATGG+TGG | 0.598726 | tig0015859:-22632 | Msa1356740:CDS |
| ACAACTTTGTCAAGAGCAGA+AGG | 0.600062 | tig0015859:+19530 | None:intergenic |
| CTGCATTGATGCTGGAAGAG+TGG | 0.601584 | tig0015859:+23257 | None:intergenic |
| ACTCAGCAAAGATTATGCTA+TGG | 0.602438 | tig0015859:-23375 | Msa1356740:CDS |
| TACAATGAGAAGAAAATGAG+AGG | 0.603290 | tig0015859:-22962 | Msa1356740:CDS |
| TTGGCTCAACCACGTCAAGA+TGG | 0.607999 | tig0015859:+19948 | None:intergenic |
| GATGTGCGGTGGTTTGTGAT+GGG | 0.608955 | tig0015859:-22773 | Msa1356740:CDS |
| AGTAGGTTAGAGAAACAGCT+AGG | 0.613573 | tig0015859:+23347 | None:intergenic |
| AGATGGTGCAGTGATACCAA+TGG | 0.614001 | tig0015859:+19965 | None:intergenic |
| CTTCCCGAATGCCACAAGAG+TGG | 0.621715 | tig0015859:-19924 | Msa1356740:CDS |
| TTGCTGTTCAGATATTTCGC+GGG | 0.625108 | tig0015859:-19790 | Msa1356740:CDS |
| CAATTCCGAACACTACATGC+CGG | 0.628782 | tig0015859:+23194 | None:intergenic |
| GTTTAGGGCTTAAAGATGTG+CGG | 0.631480 | tig0015859:-22787 | Msa1356740:CDS |
| TGGACCATTTCAGTTTCATG+GGG | 0.633074 | tig0015859:-19815 | Msa1356740:CDS |
| TTTCCATACACAAACAAACA+AGG | 0.634411 | tig0015859:-22857 | Msa1356740:CDS |
| TGGAACAGTATGATGTGTAT+GGG | 0.639733 | tig0015859:-20024 | Msa1356740:intron |
| TAGGGCTTAAAGATGTGCGG+TGG | 0.646743 | tig0015859:-22784 | Msa1356740:CDS |
| TCATCAGAACCATAAAGACC+AGG | 0.654422 | tig0015859:+22536 | None:intergenic |
| TGTGATGGGAGACGATGACA+CGG | 0.658473 | tig0015859:-22759 | Msa1356740:CDS |
| CGTACTCTATCCCATAGATG+CGG | 0.662413 | tig0015859:+19488 | None:intergenic |
| GACACGGGTGTCGAGTAACA+GGG | 0.666804 | tig0015859:+19675 | None:intergenic |
| GAAGGCATTTCAATTTCGCG+GGG | 0.666864 | tig0015859:+19758 | None:intergenic |
| CCTGAACGAAGGTCTACCAC+CGG | 0.669219 | tig0015859:-22906 | Msa1356740:CDS |
| AATGCGTGAGATTCTAATGG+CGG | 0.673864 | tig0015859:+22826 | None:intergenic |
| CCCGGACCTTGAGTACAACA+CGG | 0.676410 | tig0015859:-18415 | Msa1356740:CDS |
| TACAAAAGGAGGAATGATGG+AGG | 0.678121 | tig0015859:-18462 | Msa1356740:CDS |
| GTGAGATTCTAATGGCGGAA+CGG | 0.685008 | tig0015859:+22831 | None:intergenic |
| GGGTATATGTAAAGATGGTG+AGG | 0.687530 | tig0015859:-19114 | Msa1356740:intron |
| GTGAAAACAAACCTGAACGA+AGG | 0.698383 | tig0015859:-22917 | Msa1356740:CDS |
| TTTGCTGAGTGTGAATGTGA+AGG | 0.711752 | tig0015859:+23388 | None:intergenic |
| ATCACTGCACCATCTTGACG+TGG | 0.717319 | tig0015859:-19957 | Msa1356740:CDS |
| GATTGATGGAAAATGGACCA+TGG | 0.742814 | tig0015859:+23281 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTAAGTTATTTTTTG+AGG | + | tig0015859:19664-19683 | None:intergenic | 10.0% |
| !!! | TAAAATTGCAAATTTTTAAA+TGG | + | tig0015859:20299-20318 | None:intergenic | 10.0% |
| !! | ATTATAATATATATTTCCTA+TGG | + | tig0015859:20702-20721 | None:intergenic | 10.0% |
| !!! | TGATTCAACTTATTATTTTT+TGG | - | tig0015859:18870-18889 | Msa1356740:intron | 15.0% |
| !!! | ATAAGCAGTTTTATTATATT+GGG | - | tig0015859:19174-19193 | Msa1356740:CDS | 15.0% |
| !!! | CAGAATATATATTTTTCTTA+TGG | - | tig0015859:19218-19237 | Msa1356740:intron | 15.0% |
| !!! | TATATATTTTTCTTATGGAA+TGG | - | tig0015859:19223-19242 | Msa1356740:intron | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+CGG | + | tig0015859:20338-20357 | None:intergenic | 15.0% |
| !! | ATTAATTAAACAGATTACAA+GGG | + | tig0015859:21728-21747 | None:intergenic | 15.0% |
| !! | AATTAATTAAACAGATTACA+AGG | + | tig0015859:21729-21748 | None:intergenic | 15.0% |
| !! | AATTAGTTGAATATTGTTAA+AGG | - | tig0015859:22423-22442 | Msa1356740:intron | 15.0% |
| !!! | TTAATGTTACTTAATTTCTT+TGG | - | tig0015859:22640-22659 | Msa1356740:CDS | 15.0% |
| !! | ATTAGAAATCTATAATGTTA+CGG | + | tig0015859:23247-23266 | None:intergenic | 15.0% |
| !!! | CATAAGCAGTTTTATTATAT+TGG | - | tig0015859:19173-19192 | Msa1356740:CDS | 20.0% |
| !! | TATATATGTAATTCATTTCC+CGG | + | tig0015859:19586-19605 | None:intergenic | 20.0% |
| !! | ATGAATTACATATATAGTGT+CGG | - | tig0015859:19590-19609 | Msa1356740:CDS | 20.0% |
| !! | ATTAAAAAAATAGAGTCTAG+TGG | + | tig0015859:19624-19643 | None:intergenic | 20.0% |
| !!! | AAGAGGGTATAATTTTTATT+TGG | + | tig0015859:19833-19852 | None:intergenic | 20.0% |
| !! | TGAATGGATAAAATTGATTA+AGG | + | tig0015859:19887-19906 | None:intergenic | 20.0% |
| !!! | TAATTTTCAATCTAGATGAA+TGG | + | tig0015859:19903-19922 | None:intergenic | 20.0% |
| !!! | AAATACTTAGTTGCATTTTT+CGG | + | tig0015859:20876-20895 | None:intergenic | 20.0% |
| !!! | TTAGCCTTTCTTTATTAATT+AGG | - | tig0015859:21180-21199 | Msa1356740:intron | 20.0% |
| !!! | TTTAATTTCTCAGTTCTTTT+TGG | - | tig0015859:21217-21236 | Msa1356740:intron | 20.0% |
| !! | ATACCAATATGAAAATTTGA+CGG | + | tig0015859:21650-21669 | None:intergenic | 20.0% |
| !!! | AATTTTCATATTGGTATGAT+AGG | - | tig0015859:21653-21672 | Msa1356740:intron | 20.0% |
| !!! | TGAATTTATTAGCTTTTGAA+AGG | + | tig0015859:22235-22254 | None:intergenic | 20.0% |
| !!! | TAATGTTTTGAGTGTTTTTT+AGG | - | tig0015859:22567-22586 | Msa1356740:CDS | 20.0% |
| !!! | TGGTTTTTTGCTAATATTAT+TGG | - | tig0015859:22660-22679 | Msa1356740:CDS | 20.0% |
| !! | AATTGTGATTGATTAATGTT+AGG | - | tig0015859:22793-22812 | Msa1356740:CDS | 20.0% |
| !! | ATTTGTAATTTACTACTACT+TGG | - | tig0015859:22996-23015 | Msa1356740:intron | 20.0% |
| ! | GAAAGAACTACATAAAACTA+TGG | - | tig0015859:18721-18740 | Msa1356740:intron | 25.0% |
| !!! | TATTATTTTTTGGCGTAAAC+AGG | - | tig0015859:18880-18899 | Msa1356740:intron | 25.0% |
| ! | ATTTGCAATTAGTTATGGTT+TGG | - | tig0015859:19262-19281 | Msa1356740:intron | 25.0% |
| ! | TAAATCAATAATTACGTACC+TGG | + | tig0015859:19415-19434 | None:intergenic | 25.0% |
| ! | CTAACAGGAAAAAAGAAAAA+TGG | + | tig0015859:19523-19542 | None:intergenic | 25.0% |
| !! | CATTTTTCTTTTTTCCTGTT+AGG | - | tig0015859:19521-19540 | Msa1356740:CDS | 25.0% |
| ! | ATATATGTAATTCATTTCCC+GGG | + | tig0015859:19585-19604 | None:intergenic | 25.0% |
| ! | TAGAATTCCGAATTTGAATT+TGG | - | tig0015859:19740-19759 | Msa1356740:CDS | 25.0% |
| ! | AATAAAAGAAATCACGAAGA+GGG | + | tig0015859:19849-19868 | None:intergenic | 25.0% |
| ! | TTTAAATGGATCATCTATTG+CGG | + | tig0015859:20285-20304 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGATTTTGACCCA+GGG | + | tig0015859:20665-20684 | None:intergenic | 25.0% |
| !!! | TATTTTTTAGATTTTGACCC+AGG | + | tig0015859:20666-20685 | None:intergenic | 25.0% |
| ! | GCTGAACAAATCTAATTAAT+AGG | + | tig0015859:20793-20812 | None:intergenic | 25.0% |
| !! | ATAAACACATCCTTTTACAT+AGG | - | tig0015859:20910-20929 | Msa1356740:intron | 25.0% |
| !! | TAAACACATCCTTTTACATA+GGG | - | tig0015859:20911-20930 | Msa1356740:intron | 25.0% |
| !! | AGCTTTTATATATTAGCACT+TGG | + | tig0015859:21120-21139 | None:intergenic | 25.0% |
| ! | TGCACCTAATTAATAAAGAA+AGG | + | tig0015859:21187-21206 | None:intergenic | 25.0% |
| !! | ATTTTCAACAAAAGAAGACA+TGG | + | tig0015859:21293-21312 | None:intergenic | 25.0% |
| !! | ACCAATATACTTAGACTTTT+TGG | - | tig0015859:21551-21570 | Msa1356740:intron | 25.0% |
| ! | TCCAAAAAGTCTAAGTATAT+TGG | + | tig0015859:21555-21574 | None:intergenic | 25.0% |
| ! | TACCAATATGAAAATTTGAC+GGG | + | tig0015859:21649-21668 | None:intergenic | 25.0% |
| ! | TTGAATATGTGCATACAAAT+TGG | - | tig0015859:21697-21716 | Msa1356740:intron | 25.0% |
| ! | CAATTAAGAAATGTTCTTGA+AGG | + | tig0015859:22128-22147 | None:intergenic | 25.0% |
| ! | CTTCAAGAACATTTCTTAAT+TGG | - | tig0015859:22126-22145 | Msa1356740:intron | 25.0% |
| ! | TTTGAAAGGTAAAACACAAA+AGG | + | tig0015859:22221-22240 | None:intergenic | 25.0% |
| ! | TTACAAGTTCAAATTAGTGT+AGG | - | tig0015859:22463-22482 | Msa1356740:intron | 25.0% |
| !! | TTTTTGCTAATATTATTGGC+AGG | - | tig0015859:22664-22683 | Msa1356740:CDS | 25.0% |
| ! | TCAATCACAATTTACAATCA+AGG | + | tig0015859:22785-22804 | None:intergenic | 25.0% |
| !!! | AATTTATTTTTGTGCAAGCA+TGG | + | tig0015859:23056-23075 | None:intergenic | 25.0% |
| ! | TGCACAAAAATAAATTTCGA+TGG | - | tig0015859:23060-23079 | Msa1356740:intron | 25.0% |
| ! | GCACAAAAATAAATTTCGAT+GGG | - | tig0015859:23061-23080 | Msa1356740:intron | 25.0% |
| ! | ATAGATTTCTAATTACAACC+CGG | - | tig0015859:23254-23273 | Msa1356740:CDS | 25.0% |
| ! | TTTGAGAGTGTAAATGAAGT+AGG | + | tig0015859:18538-18557 | None:intergenic | 30.0% |
| TACAATGAGAAGAAAATGAG+AGG | - | tig0015859:18903-18922 | Msa1356740:intron | 30.0% | |
| AGAAAATGAGAGGAATAGTA+TGG | - | tig0015859:18913-18932 | Msa1356740:intron | 30.0% | |
| TTTCCATACACAAACAAACA+AGG | - | tig0015859:19008-19027 | Msa1356740:intron | 30.0% | |
| !! | TTGTGACGGATAATTTGATT+AGG | - | tig0015859:19132-19151 | Msa1356740:CDS | 30.0% |
| !! | TGTGACGGATAATTTGATTA+GGG | - | tig0015859:19133-19152 | Msa1356740:CDS | 30.0% |
| ! | TTTTCTTATGGAATGGCTTA+TGG | - | tig0015859:19230-19249 | Msa1356740:intron | 30.0% |
| AAAATGGAAAGTTCACTCAA+GGG | + | tig0015859:19507-19526 | None:intergenic | 30.0% | |
| AAAAATGGAAAGTTCACTCA+AGG | + | tig0015859:19508-19527 | None:intergenic | 30.0% | |
| TATATGTAATTCATTTCCCG+GGG | + | tig0015859:19584-19603 | None:intergenic | 30.0% | |
| TTCTCAACGTTACAATCTAA+TGG | - | tig0015859:19693-19712 | Msa1356740:CDS | 30.0% | |
| TGTTGGTCCAAATTCAAATT+CGG | + | tig0015859:19750-19769 | None:intergenic | 30.0% | |
| CAATAAAAGAAATCACGAAG+AGG | + | tig0015859:19850-19869 | None:intergenic | 30.0% | |
| ! | CTCTTCGTGATTTCTTTTAT+TGG | - | tig0015859:19848-19867 | Msa1356740:CDS | 30.0% |
| !!! | AACTCTTTTTTGTGGATGTA+GGG | + | tig0015859:19976-19995 | None:intergenic | 30.0% |
| TACATCCACAAAAAAGAGTT+CGG | - | tig0015859:19976-19995 | Msa1356740:CDS | 30.0% | |
| !!! | ATAATCCGAACTCTTTTTTG+TGG | + | tig0015859:19984-20003 | None:intergenic | 30.0% |
| ACATAGTAGTCTATCAAGAT+CGG | + | tig0015859:20210-20229 | None:intergenic | 30.0% | |
| TGACAACATGGAATAATGAA+GGG | - | tig0015859:20243-20262 | Msa1356740:intron | 30.0% | |
| TTAAATGGATCATCTATTGC+GGG | + | tig0015859:20284-20303 | None:intergenic | 30.0% | |
| AAATACGGTCAAAGTAAGTT+AGG | + | tig0015859:20323-20342 | None:intergenic | 30.0% | |
| ATCAACTGTGTCAAGTATTA+TGG | - | tig0015859:20495-20514 | Msa1356740:intron | 30.0% | |
| TCAACTGTGTCAAGTATTAT+GGG | - | tig0015859:20496-20515 | Msa1356740:intron | 30.0% | |
| ATAAGCAGAAGAAAATCCAT+AGG | - | tig0015859:20683-20702 | Msa1356740:intron | 30.0% | |
| GAAACTTGAGTGAATAGAAT+AGG | + | tig0015859:20966-20985 | None:intergenic | 30.0% | |
| !! | TAATGTTTTTCGACCAAACT+AGG | - | tig0015859:21149-21168 | Msa1356740:intron | 30.0% |
| GCTAAATAAAAGACCTAGTT+TGG | + | tig0015859:21165-21184 | None:intergenic | 30.0% | |
| TGAAAATAGAAGTCTCACAT+AGG | - | tig0015859:21306-21325 | Msa1356740:intron | 30.0% | |
| TGAAAATAGAAGTTTCACGT+TGG | - | tig0015859:21483-21502 | Msa1356740:intron | 30.0% | |
| AAAAGAGTTTATAAGCAACG+AGG | - | tig0015859:21522-21541 | Msa1356740:intron | 30.0% | |
| TTTGTTTAAGTGTCTAAGCT+TGG | + | tig0015859:21588-21607 | None:intergenic | 30.0% | |
| !!! | ATGAAAATTTGACGGGTTTT+AGG | + | tig0015859:21642-21661 | None:intergenic | 30.0% |
| ! | AACCCGTCAAATTTTCATAT+TGG | - | tig0015859:21644-21663 | Msa1356740:intron | 30.0% |
| ! | TAACTTGCAAAACCTAATTC+TGG | - | tig0015859:22600-22619 | Msa1356740:CDS | 30.0% |
| CAACATATGAAACCAGAATT+AGG | + | tig0015859:22615-22634 | None:intergenic | 30.0% | |
| GTGATGAAGTCAAATAAGAA+AGG | - | tig0015859:22710-22729 | Msa1356740:CDS | 30.0% | |
| GTCAAATAAGAAAGGAAGAA+TGG | - | tig0015859:22718-22737 | Msa1356740:CDS | 30.0% | |
| AAATGCTTAAGATAGTAAGC+CGG | + | tig0015859:23276-23295 | None:intergenic | 30.0% | |
| ATGACAATGGAATGAGTATA+TGG | + | tig0015859:23368-23387 | None:intergenic | 30.0% | |
| ATTCCATTGTCATATTGTTC+AGG | - | tig0015859:23375-23394 | Msa1356740:CDS | 30.0% | |
| TTGTTCAGGAACATTACAAA+AGG | - | tig0015859:23389-23408 | Msa1356740:CDS | 30.0% | |
| ACTCAGCAAAGATTATGCTA+TGG | - | tig0015859:18490-18509 | Msa1356740:intron | 35.0% | |
| !! | GGTTCTTTTAGAAGAAGAAG+TGG | + | tig0015859:18646-18665 | None:intergenic | 35.0% |
| !! | TTGTTCCCAAAGTTTTGATG+AGG | + | tig0015859:18700-18719 | None:intergenic | 35.0% |
| AATGAGAGGAATAGTATGGA+TGG | - | tig0015859:18917-18936 | Msa1356740:intron | 35.0% | |
| !! | GTGTCAGTTGATATTTTCAC+CGG | + | tig0015859:18981-19000 | None:intergenic | 35.0% |
| ! | TGACCTTGTTTGTTTGTGTA+TGG | + | tig0015859:19014-19033 | None:intergenic | 35.0% |
| AACAATGCGTGAGATTCTAA+TGG | + | tig0015859:19045-19064 | None:intergenic | 35.0% | |
| ! | GGTGGATTTGCAATTAGTTA+TGG | - | tig0015859:19257-19276 | Msa1356740:intron | 35.0% |
| ! | AAAAGCTCTAGTGAAAATGC+AGG | - | tig0015859:19286-19305 | Msa1356740:intron | 35.0% |
| GTTCCACTTACCAAAGAAAT+CGG | - | tig0015859:19383-19402 | Msa1356740:intron | 35.0% | |
| ! | AAACCGATTTCTTTGGTAAG+TGG | + | tig0015859:19389-19408 | None:intergenic | 35.0% |
| TGTAGGATTAAGACATGACT+TGG | - | tig0015859:19472-19491 | Msa1356740:intron | 35.0% | |
| GTAGGATTAAGACATGACTT+GGG | - | tig0015859:19473-19492 | Msa1356740:intron | 35.0% | |
| !!! | TTTTTTCCTGTTAGGAGTGT+GGG | - | tig0015859:19529-19548 | Msa1356740:CDS | 35.0% |
| CAAAATGCTGTAAAAGTTGG+CGG | + | tig0015859:19558-19577 | None:intergenic | 35.0% | |
| GGACAAAATGCTGTAAAAGT+TGG | + | tig0015859:19561-19580 | None:intergenic | 35.0% | |
| ATATGTAATTCATTTCCCGG+GGG | + | tig0015859:19583-19602 | None:intergenic | 35.0% | |
| ATTGAGGAGGAAAAATGTGT+TGG | + | tig0015859:19767-19786 | None:intergenic | 35.0% | |
| ! | TTTTTCCTCCTCAATGTGTA+TGG | - | tig0015859:19772-19791 | Msa1356740:CDS | 35.0% |
| TTATTTGGCTATTGAGCTAG+TGG | + | tig0015859:19818-19837 | None:intergenic | 35.0% | |
| !!! | GAACTCTTTTTTGTGGATGT+AGG | + | tig0015859:19977-19996 | None:intergenic | 35.0% |
| TGATATGACAAGTGACAACA+TGG | - | tig0015859:20231-20250 | Msa1356740:intron | 35.0% | |
| GTGACAACATGGAATAATGA+AGG | - | tig0015859:20242-20261 | Msa1356740:intron | 35.0% | |
| GACAACATGGAATAATGAAG+GGG | - | tig0015859:20244-20263 | Msa1356740:intron | 35.0% | |
| ATCTGAGTTATAACTGCAGA+GGG | + | tig0015859:20634-20653 | None:intergenic | 35.0% | |
| !! | ACCATTTCTAGTGCAATTCA+TGG | - | tig0015859:21004-21023 | Msa1356740:intron | 35.0% |
| TCCATGAATTGCACTAGAAA+TGG | + | tig0015859:21008-21027 | None:intergenic | 35.0% | |
| TGGTTTAATCAGAGTGATCT+TGG | - | tig0015859:21237-21256 | Msa1356740:intron | 35.0% | |
| CGACACAAAAAGTCAATACA+TGG | - | tig0015859:21400-21419 | Msa1356740:intron | 35.0% | |
| AATAGTCCATGTGTGTTTCT+TGG | - | tig0015859:21821-21840 | Msa1356740:intron | 35.0% | |
| TTGGAACAGTATGATGTGTA+TGG | - | tig0015859:21840-21859 | Msa1356740:intron | 35.0% | |
| TGGAACAGTATGATGTGTAT+GGG | - | tig0015859:21841-21860 | Msa1356740:intron | 35.0% | |
| ATGTGTATGGGAACCTATTT+GGG | - | tig0015859:21853-21872 | Msa1356740:intron | 35.0% | |
| ! | CTTTTCTTTGTCGTAACAGA+TGG | + | tig0015859:22027-22046 | None:intergenic | 35.0% |
| GTTACGACAAAGAAAAGAGA+TGG | - | tig0015859:22030-22049 | Msa1356740:intron | 35.0% | |
| ATGGACCATTTCAGTTTCAT+GGG | - | tig0015859:22049-22068 | Msa1356740:intron | 35.0% | |
| AAAACCCCATGAAACTGAAA+TGG | + | tig0015859:22057-22076 | None:intergenic | 35.0% | |
| !! | TTTGCTGTTCAGATATTTCG+CGG | - | tig0015859:22074-22093 | Msa1356740:intron | 35.0% |
| !! | TTGAAGGCATTTCAATTTCG+CGG | + | tig0015859:22112-22131 | None:intergenic | 35.0% |
| !!! | AAGGATTAGCCATTTTCCAT+CGG | + | tig0015859:22319-22338 | None:intergenic | 35.0% |
| TAAGAAAGGAAGAATGGTGA+TGG | - | tig0015859:22724-22743 | Msa1356740:CDS | 35.0% | |
| GATGTGGGTATATGTAAAGA+TGG | - | tig0015859:22746-22765 | Msa1356740:CDS | 35.0% | |
| CGATGGGAGATTAAATAACT+TGG | - | tig0015859:23077-23096 | Msa1356740:intron | 35.0% | |
| AATGCTTAAGATAGTAAGCC+GGG | + | tig0015859:23275-23294 | None:intergenic | 35.0% | |
| TAAGCATTTCACCCTTACAA+TGG | - | tig0015859:23287-23306 | Msa1356740:CDS | 35.0% | |
| GTTCCTGAACAATATGACAA+TGG | + | tig0015859:23381-23400 | None:intergenic | 35.0% | |
| TTCAGGAACATTACAAAAGG+AGG | - | tig0015859:23392-23411 | Msa1356740:CDS | 35.0% | |
| CATTACAAAAGGAGGAATGA+TGG | - | tig0015859:23400-23419 | Msa1356740:CDS | 35.0% | |
| TTGTTGTGTGGGATTCACTA+AGG | + | tig0015859:18454-18473 | None:intergenic | 40.0% | |
| TTTGCTGAGTGTGAATGTGA+AGG | + | tig0015859:18480-18499 | None:intergenic | 40.0% | |
| AGTAGGTTAGAGAAACAGCT+AGG | + | tig0015859:18521-18540 | None:intergenic | 40.0% | |
| ATGGTTGCAATTGCTTGAAG+TGG | + | tig0015859:18568-18587 | None:intergenic | 40.0% | |
| ACTTCAAGCAATTGCAACCA+TGG | - | tig0015859:18567-18586 | Msa1356740:intron | 40.0% | |
| GATTGATGGAAAATGGACCA+TGG | + | tig0015859:18587-18606 | None:intergenic | 40.0% | |
| GAGTGGTGATTGATGGAAAA+TGG | + | tig0015859:18594-18613 | None:intergenic | 40.0% | |
| TTGCAGCCTCATCAAAACTT+TGG | - | tig0015859:18691-18710 | Msa1356740:intron | 40.0% | |
| TGCAGCCTCATCAAAACTTT+GGG | - | tig0015859:18692-18711 | Msa1356740:intron | 40.0% | |
| ! | CAATCAGACGATTAGCTAGT+CGG | + | tig0015859:18784-18803 | None:intergenic | 40.0% |
| GTCAGTCGATTGTAGTCAAT+TGG | - | tig0015859:18839-18858 | Msa1356740:intron | 40.0% | |
| GTGAAAACAAACCTGAACGA+AGG | - | tig0015859:18948-18967 | Msa1356740:intron | 40.0% | |
| !! | TCAGTTGATATTTTCACCGG+TGG | + | tig0015859:18978-18997 | None:intergenic | 40.0% |
| AATGCGTGAGATTCTAATGG+CGG | + | tig0015859:19042-19061 | None:intergenic | 40.0% | |
| TTTCCGAGACATTGCGTTTA+GGG | - | tig0015859:19063-19082 | Msa1356740:intron | 40.0% | |
| ! | GTTTAGGGCTTAAAGATGTG+CGG | - | tig0015859:19078-19097 | Msa1356740:intron | 40.0% |
| TCTTATGGAATGGCTTATGG+TGG | - | tig0015859:19233-19252 | Msa1356740:intron | 40.0% | |
| TGCAGGATCGTTGTATTCAT+AGG | - | tig0015859:19303-19322 | Msa1356740:intron | 40.0% | |
| CGTTGTATTCATAGGTATCC+TGG | - | tig0015859:19311-19330 | Msa1356740:intron | 40.0% | |
| ! | CATAGGTATCCTGGTCTTTA+TGG | - | tig0015859:19320-19339 | Msa1356740:intron | 40.0% |
| TCATCAGAACCATAAAGACC+AGG | + | tig0015859:19332-19351 | None:intergenic | 40.0% | |
| TGATCGAATGCAAGCTTGTA+TGG | - | tig0015859:19349-19368 | Msa1356740:intron | 40.0% | |
| ! | CTGGTGAAAACCGATTTCTT+TGG | + | tig0015859:19396-19415 | None:intergenic | 40.0% |
| !! | CAAAGAAATCGGTTTTCACC+AGG | - | tig0015859:19394-19413 | Msa1356740:intron | 40.0% |
| GTGTCTTCTTGTGTATGTGT+AGG | - | tig0015859:19455-19474 | Msa1356740:intron | 40.0% | |
| !!! | CTTTTTTCCTGTTAGGAGTG+TGG | - | tig0015859:19528-19547 | Msa1356740:CDS | 40.0% |
| TATGTAATTCATTTCCCGGG+GGG | + | tig0015859:19582-19601 | None:intergenic | 40.0% | |
| !! | GGACGGTTGCTATTTGAAAT+TGG | + | tig0015859:20189-20208 | None:intergenic | 40.0% |
| AGTAGTCTATCAAGATCGGA+CGG | + | tig0015859:20206-20225 | None:intergenic | 40.0% | |
| CTGTGTCAAGTATTATGGGA+TGG | - | tig0015859:20500-20519 | Msa1356740:intron | 40.0% | |
| TGTCAAGTATTATGGGATGG+AGG | - | tig0015859:20503-20522 | Msa1356740:intron | 40.0% | |
| GTCAAGTATTATGGGATGGA+GGG | - | tig0015859:20504-20523 | Msa1356740:intron | 40.0% | |
| AGCGACTTTACACTAAGGAA+TGG | - | tig0015859:20591-20610 | Msa1356740:intron | 40.0% | |
| GCGACTTTACACTAAGGAAT+GGG | - | tig0015859:20592-20611 | Msa1356740:intron | 40.0% | |
| GATCTGAGTTATAACTGCAG+AGG | + | tig0015859:20635-20654 | None:intergenic | 40.0% | |
| !! | TTAGATTTTGACCCAGGGAA+GGG | + | tig0015859:20660-20679 | None:intergenic | 40.0% |
| !! | TTTAGATTTTGACCCAGGGA+AGG | + | tig0015859:20661-20680 | None:intergenic | 40.0% |
| !! | TGTTCAGCCGTTAAGTTGAT+CGG | - | tig0015859:20805-20824 | Msa1356740:intron | 40.0% |
| GCAACAACCGATCAACTTAA+CGG | + | tig0015859:20815-20834 | None:intergenic | 40.0% | |
| TTGATCGGTTGTTGCTGAAA+TGG | - | tig0015859:20820-20839 | Msa1356740:intron | 40.0% | |
| ! | ACACATCCTTTTACATAGGG+TGG | - | tig0015859:20914-20933 | Msa1356740:intron | 40.0% |
| ! | CACATCCTTTTACATAGGGT+GGG | - | tig0015859:20915-20934 | Msa1356740:intron | 40.0% |
| CTAGTGCAATTCATGGAAAG+TGG | - | tig0015859:21011-21030 | Msa1356740:intron | 40.0% | |
| TAGTGAGACCAAAAGAGTCT+AGG | - | tig0015859:21339-21358 | Msa1356740:intron | 40.0% | |
| ! | ACCAAAAGAGTCTAGGATCA+CGG | - | tig0015859:21346-21365 | Msa1356740:intron | 40.0% |
| GTCGAGATATGAGTACTCTT+TGG | + | tig0015859:21384-21403 | None:intergenic | 40.0% | |
| AGTCACTAAAGAGACCATTC+CGG | - | tig0015859:21440-21459 | Msa1356740:intron | 40.0% | |
| ACCATTCCGGTTAAACTTGA+GGG | - | tig0015859:21453-21472 | Msa1356740:intron | 40.0% | |
| CATTCTCCCTCAAGTTTAAC+CGG | + | tig0015859:21462-21481 | None:intergenic | 40.0% | |
| GTTTAAGTGTCTAAGCTTGG+AGG | + | tig0015859:21585-21604 | None:intergenic | 40.0% | |
| ! | TTTAGGACAGGCTCAATTTG+AGG | + | tig0015859:21625-21644 | None:intergenic | 40.0% |
| !!! | AATTTGACGGGTTTTAGGAC+AGG | + | tig0015859:21637-21656 | None:intergenic | 40.0% |
| ACTGTTCCAAGAAACACACA+TGG | + | tig0015859:21830-21849 | None:intergenic | 40.0% | |
| GATGTGTATGGGAACCTATT+TGG | - | tig0015859:21852-21871 | Msa1356740:intron | 40.0% | |
| AGTGATACCAATGGAGTTAC+TGG | + | tig0015859:21894-21913 | None:intergenic | 40.0% | |
| CGAGCTTCATTGGTATTGTA+AGG | + | tig0015859:21980-21999 | None:intergenic | 40.0% | |
| GATGGACCATTTCAGTTTCA+TGG | - | tig0015859:22048-22067 | Msa1356740:intron | 40.0% | |
| TGGACCATTTCAGTTTCATG+GGG | - | tig0015859:22050-22069 | Msa1356740:intron | 40.0% | |
| ! | TTGCTGTTCAGATATTTCGC+GGG | - | tig0015859:22075-22094 | Msa1356740:intron | 40.0% |
| !! | TGAAGGCATTTCAATTTCGC+GGG | + | tig0015859:22111-22130 | None:intergenic | 40.0% |
| AACACAAAAGGCTTCTGACA+CGG | + | tig0015859:22209-22228 | None:intergenic | 40.0% | |
| ACAACTTTGTCAAGAGCAGA+AGG | + | tig0015859:22338-22357 | None:intergenic | 40.0% | |
| AATATTATTGGCAGGCTCCA+AGG | - | tig0015859:22672-22691 | Msa1356740:CDS | 40.0% | |
| GGGTATATGTAAAGATGGTG+AGG | - | tig0015859:22751-22770 | Msa1356740:CDS | 40.0% | |
| ACTTGGATTTAGTCGCACAT+AGG | - | tig0015859:23094-23113 | Msa1356740:intron | 40.0% | |
| TTAGTCGCACATAGGTAGTT+CGG | - | tig0015859:23102-23121 | Msa1356740:intron | 40.0% | |
| GATATCGAGGTCCATTGTAA+GGG | + | tig0015859:23301-23320 | None:intergenic | 40.0% | |
| TGATATCGAGGTCCATTGTA+AGG | + | tig0015859:23302-23321 | None:intergenic | 40.0% | |
| TACAAAAGGAGGAATGATGG+AGG | - | tig0015859:23403-23422 | Msa1356740:CDS | 40.0% | |
| GTGTGGGATTCACTAAGGTT+GGG | + | tig0015859:18449-18468 | None:intergenic | 45.0% | |
| TGTGTGGGATTCACTAAGGT+TGG | + | tig0015859:18450-18469 | None:intergenic | 45.0% | |
| TGTGAAGGTCGTTGTTGTGT+GGG | + | tig0015859:18465-18484 | None:intergenic | 45.0% | |
| ATGTGAAGGTCGTTGTTGTG+TGG | + | tig0015859:18466-18485 | None:intergenic | 45.0% | |
| ! | CTTCTAAAAGAACCGAGCTC+CGG | - | tig0015859:18652-18671 | Msa1356740:intron | 45.0% |
| CAATTCCGAACACTACATGC+CGG | + | tig0015859:18674-18693 | None:intergenic | 45.0% | |
| ! | CGACTAGCTAATCGTCTGAT+TGG | - | tig0015859:18782-18801 | Msa1356740:intron | 45.0% |
| TGACTACAATCGACTGACGT+TGG | + | tig0015859:18837-18856 | None:intergenic | 45.0% | |
| ! | GTGAGATTCTAATGGCGGAA+CGG | + | tig0015859:19037-19056 | None:intergenic | 45.0% |
| GTTTCCGAGACATTGCGTTT+AGG | - | tig0015859:19062-19081 | Msa1356740:intron | 45.0% | |
| AAGCCCTAAACGCAATGTCT+CGG | + | tig0015859:19069-19088 | None:intergenic | 45.0% | |
| ! | CGATGACACGGTTTTTGTGA+CGG | - | tig0015859:19118-19137 | Msa1356740:CDS | 45.0% |
| TATGGAATGGCTTATGGTGG+TGG | - | tig0015859:19236-19255 | Msa1356740:intron | 45.0% | |
| CAAGCTTGTATGGCTGAACT+TGG | - | tig0015859:19359-19378 | Msa1356740:intron | 45.0% | |
| ! | TTTACAGCATTTTGTCCCCC+CGG | - | tig0015859:19564-19583 | Msa1356740:CDS | 45.0% |
| GTCAACCATACACATTGAGG+AGG | + | tig0015859:19780-19799 | None:intergenic | 45.0% | |
| GTGGTCAACCATACACATTG+AGG | + | tig0015859:19783-19802 | None:intergenic | 45.0% | |
| CTAGTGGTCACACATACTAG+TGG | + | tig0015859:19802-19821 | None:intergenic | 45.0% | |
| ATGGATCATCTATTGCGGGA+CGG | + | tig0015859:20280-20299 | None:intergenic | 45.0% | |
| ATGTGTGCCCCTAGAATTCA+AGG | - | tig0015859:20537-20556 | Msa1356740:intron | 45.0% | |
| GGACCTACCTTGAATTCTAG+GGG | + | tig0015859:20547-20566 | None:intergenic | 45.0% | |
| GGGACCTACCTTGAATTCTA+GGG | + | tig0015859:20548-20567 | None:intergenic | 45.0% | |
| TGGGACCTACCTTGAATTCT+AGG | + | tig0015859:20549-20568 | None:intergenic | 45.0% | |
| GCACAAGCGACTTTACACTA+AGG | - | tig0015859:20586-20605 | Msa1356740:intron | 45.0% | |
| GATTGTCACGTATGCATGCA+TGG | - | tig0015859:20747-20766 | Msa1356740:intron | 45.0% | |
| CGGTTGTTGCTGAAATGGAT+TGG | - | tig0015859:20825-20844 | Msa1356740:intron | 45.0% | |
| ! | ATCCTTTTACATAGGGTGGG+TGG | - | tig0015859:20918-20937 | Msa1356740:intron | 45.0% |
| ! | ACCGTGATCCTAGACTCTTT+TGG | + | tig0015859:21350-21369 | None:intergenic | 45.0% |
| GACCATTCCGGTTAAACTTG+AGG | - | tig0015859:21452-21471 | Msa1356740:intron | 45.0% | |
| TCCCTCAAGTTTAACCGGAA+TGG | + | tig0015859:21457-21476 | None:intergenic | 45.0% | |
| GTGTCTAAGCTTGGAGGTTT+AGG | + | tig0015859:21579-21598 | None:intergenic | 45.0% | |
| AGCTCATCCAGTAACTCCAT+TGG | - | tig0015859:21884-21903 | Msa1356740:intron | 45.0% | |
| AGATGGTGCAGTGATACCAA+TGG | + | tig0015859:21903-21922 | None:intergenic | 45.0% | |
| ! | TTGAAGTGCTTCCACTCTTG+TGG | + | tig0015859:21955-21974 | None:intergenic | 45.0% |
| !! | GAAGGCATTTCAATTTCGCG+GGG | + | tig0015859:22110-22129 | None:intergenic | 45.0% |
| ACACAAAAGGCTTCTGACAC+GGG | + | tig0015859:22208-22227 | None:intergenic | 45.0% | |
| !! | AAAGCATCGTGTTCCTCATC+CGG | - | tig0015859:22289-22308 | Msa1356740:intron | 45.0% |
| GTACTCTATCCCATAGATGC+GGG | + | tig0015859:22379-22398 | None:intergenic | 45.0% | |
| CGTACTCTATCCCATAGATG+CGG | + | tig0015859:22380-22399 | None:intergenic | 45.0% | |
| ACTCTGCAACAGTTTCTCCT+TGG | + | tig0015859:22692-22711 | None:intergenic | 45.0% | |
| !! | AGGAAGAATGGTGATGGATG+TGG | - | tig0015859:22730-22749 | Msa1356740:CDS | 45.0% |
| !! | GGAAGAATGGTGATGGATGT+GGG | - | tig0015859:22731-22750 | Msa1356740:CDS | 45.0% |
| !! | TAGTTCGGTTGGTGAGCTAA+AGG | - | tig0015859:23117-23136 | Msa1356740:intron | 45.0% |
| GTCCTCAAACCTAAAAACCC+CGG | - | tig0015859:23432-23451 | Msa1356740:CDS | 45.0% | |
| !!! | AATTTAATTTATAGAAATAA+AGG | - | tig0015859:22964-22983 | Msa1356740:CDS | 5.0% |
| GCTGGAAGAGTGGTGATTGA+TGG | + | tig0015859:18601-18620 | None:intergenic | 50.0% | |
| ! | CTGCATTGATGCTGGAAGAG+TGG | + | tig0015859:18611-18630 | None:intergenic | 50.0% |
| ! | GCTGTTTGCTGCATTGATGC+TGG | + | tig0015859:18619-18638 | None:intergenic | 50.0% |
| TAGGGCTTAAAGATGTGCGG+TGG | - | tig0015859:19081-19100 | Msa1356740:intron | 50.0% | |
| ! | AGATGTGCGGTGGTTTGTGA+TGG | - | tig0015859:19091-19110 | Msa1356740:intron | 50.0% |
| ! | GATGTGCGGTGGTTTGTGAT+GGG | - | tig0015859:19092-19111 | Msa1356740:intron | 50.0% |
| ! | TGTGATGGGAGACGATGACA+CGG | - | tig0015859:19106-19125 | Msa1356740:intron | 50.0% |
| ! | TTACAGCATTTTGTCCCCCC+GGG | - | tig0015859:19565-19584 | Msa1356740:CDS | 50.0% |
| ATCATCTATTGCGGGACGGA+GGG | + | tig0015859:20276-20295 | None:intergenic | 50.0% | |
| GTGCCCCTAGAATTCAAGGT+AGG | - | tig0015859:20541-20560 | Msa1356740:intron | 50.0% | |
| AACTCAGATCATCCCTTCCC+TGG | - | tig0015859:20645-20664 | Msa1356740:intron | 50.0% | |
| ACTCAGATCATCCCTTCCCT+GGG | - | tig0015859:20646-20665 | Msa1356740:intron | 50.0% | |
| ! | CTTTTACATAGGGTGGGTGG+CGG | - | tig0015859:20921-20940 | Msa1356740:intron | 50.0% |
| ! | AAGAGTCTAGGATCACGGTG+AGG | - | tig0015859:21351-21370 | Msa1356740:intron | 50.0% |
| GAGCTGCAAGAAGCCCAAAT+AGG | + | tig0015859:21869-21888 | None:intergenic | 50.0% | |
| ATCACTGCACCATCTTGACG+TGG | - | tig0015859:21908-21927 | Msa1356740:intron | 50.0% | |
| TTGGCTCAACCACGTCAAGA+TGG | + | tig0015859:21920-21939 | None:intergenic | 50.0% | |
| CTTGTGGCATTCGGGAAGAT+TGG | + | tig0015859:21939-21958 | None:intergenic | 50.0% | |
| CTTCCACTCTTGTGGCATTC+GGG | + | tig0015859:21947-21966 | None:intergenic | 50.0% | |
| GCTTCCACTCTTGTGGCATT+CGG | + | tig0015859:21948-21967 | None:intergenic | 50.0% | |
| TCCGGAATGCCGATGGAAAA+TGG | - | tig0015859:22307-22326 | Msa1356740:intron | 50.0% | |
| !! | GCCATTTTCCATCGGCATTC+CGG | + | tig0015859:22311-22330 | None:intergenic | 50.0% |
| ! | CCACACCCCATCCCATTTTA+GGG | + | tig0015859:22890-22909 | None:intergenic | 50.0% |
| ! | TCCACACCCCATCCCATTTT+AGG | + | tig0015859:22891-22910 | None:intergenic | 50.0% |
| ATGGGGTGTGGAAAGAAGTG+TGG | - | tig0015859:22899-22918 | Msa1356740:CDS | 50.0% | |
| ! | TGGGGTGTGGAAAGAAGTGT+GGG | - | tig0015859:22900-22919 | Msa1356740:CDS | 50.0% |
| TCGCACATAGGTAGTTCGGT+TGG | - | tig0015859:23106-23125 | Msa1356740:intron | 50.0% | |
| ACTCGACTAGCGTGATATCG+AGG | + | tig0015859:23314-23333 | None:intergenic | 50.0% | |
| !!! | GTCCGGGGTTTTTAGGTTTG+AGG | + | tig0015859:23437-23456 | None:intergenic | 50.0% |
| ! | ACTCAAGGTCCGGGGTTTTT+AGG | + | tig0015859:23444-23463 | None:intergenic | 50.0% |
| GAACACTACATGCCGGAGCT+CGG | + | tig0015859:18667-18686 | None:intergenic | 55.0% | |
| GAGCTCCGGCATGTAGTGTT+CGG | - | tig0015859:18666-18685 | Msa1356740:intron | 55.0% | |
| CCTGAACGAAGGTCTACCAC+CGG | - | tig0015859:18959-18978 | Msa1356740:intron | 55.0% | |
| !! | GGAATGGCTTATGGTGGTGG+TGG | - | tig0015859:19239-19258 | Msa1356740:intron | 55.0% |
| CGGTTACCCACACTCCTAAC+AGG | + | tig0015859:19538-19557 | None:intergenic | 55.0% | |
| GATCATCTATTGCGGGACGG+AGG | + | tig0015859:20277-20296 | None:intergenic | 55.0% | |
| TCCCACGTTGTACCAAGCTC+TGG | - | tig0015859:20564-20583 | Msa1356740:intron | 55.0% | |
| GCCAGAGCTTGGTACAACGT+GGG | + | tig0015859:20568-20587 | None:intergenic | 55.0% | |
| TGCCAGAGCTTGGTACAACG+TGG | + | tig0015859:20569-20588 | None:intergenic | 55.0% | |
| AAGTCGCTTGTGCCAGAGCT+TGG | + | tig0015859:20579-20598 | None:intergenic | 55.0% | |
| CGCCACCCACCCTATGTAAA+AGG | + | tig0015859:20923-20942 | None:intergenic | 55.0% | |
| CTTCCCGAATGCCACAAGAG+TGG | - | tig0015859:21941-21960 | Msa1356740:intron | 55.0% | |
| CCTGCTGAGTCGAGCTTCAT+TGG | + | tig0015859:21990-22009 | None:intergenic | 55.0% | |
| CCAATGAAGCTCGACTCAGC+AGG | - | tig0015859:21987-22006 | Msa1356740:intron | 55.0% | |
| !! | GACACGGGTGTCGAGTAACA+GGG | + | tig0015859:22193-22212 | None:intergenic | 55.0% |
| !! | TGACACGGGTGTCGAGTAAC+AGG | + | tig0015859:22194-22213 | None:intergenic | 55.0% |
| TTCCTCATCCGGAATGCCGA+TGG | - | tig0015859:22300-22319 | Msa1356740:intron | 55.0% | |
| TTCCATCGGCATTCCGGATG+AGG | + | tig0015859:22305-22324 | None:intergenic | 55.0% | |
| AGAAGCCAGACCCGCATCTA+TGG | - | tig0015859:22366-22385 | Msa1356740:intron | 55.0% | |
| GAAGCCAGACCCGCATCTAT+GGG | - | tig0015859:22367-22386 | Msa1356740:intron | 55.0% | |
| CTATCCCATAGATGCGGGTC+TGG | + | tig0015859:22374-22393 | None:intergenic | 55.0% | |
| CCCTAAAATGGGATGGGGTG+TGG | - | tig0015859:22887-22906 | Msa1356740:CDS | 55.0% | |
| CGTGTTGTACTCAAGGTCCG+GGG | + | tig0015859:23452-23471 | None:intergenic | 55.0% | |
| CCGTGTTGTACTCAAGGTCC+GGG | + | tig0015859:23453-23472 | None:intergenic | 55.0% | |
| CCCGGACCTTGAGTACAACA+CGG | - | tig0015859:23450-23469 | Msa1356740:exon | 55.0% | |
| GCCGTGTTGTACTCAAGGTC+CGG | + | tig0015859:23454-23473 | None:intergenic | 55.0% | |
| GACCTTGAGTACAACACGGC+AGG | - | tig0015859:23454-23473 | Msa1356740:exon | 55.0% | |
| TGCCTGCCGTGTTGTACTCA+AGG | + | tig0015859:23459-23478 | None:intergenic | 55.0% | |
| CCGGTGGTAGACCTTCGTTC+AGG | + | tig0015859:18962-18981 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015859 | gene | 18386 | 23501 | 18386 | ID=Msa1356740;Name=Msa1356740 |
| tig0015859 | mRNA | 18386 | 23501 | 18386 | ID=Msa1356740-mRNA-1;Parent=Msa1356740;Name=Msa1356740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=37|0.75|0.2|0.8|1|1|5|0|523 |
| tig0015859 | exon | 18386 | 18490 | 18386 | ID=Msa1356740-mRNA-1:exon:10139;Parent=Msa1356740-mRNA-1 |
| tig0015859 | exon | 19115 | 19201 | 19115 | ID=Msa1356740-mRNA-1:exon:10138;Parent=Msa1356740-mRNA-1 |
| tig0015859 | exon | 19493 | 20038 | 19493 | ID=Msa1356740-mRNA-1:exon:10137;Parent=Msa1356740-mRNA-1 |
| tig0015859 | exon | 22472 | 22985 | 22472 | ID=Msa1356740-mRNA-1:exon:10136;Parent=Msa1356740-mRNA-1 |
| tig0015859 | exon | 23145 | 23501 | 23145 | ID=Msa1356740-mRNA-1:exon:10135;Parent=Msa1356740-mRNA-1 |
| tig0015859 | five_prime_UTR | 23465 | 23501 | 23465 | ID=Msa1356740-mRNA-1:five_prime_utr;Parent=Msa1356740-mRNA-1 |
| tig0015859 | CDS | 23145 | 23464 | 23145 | ID=Msa1356740-mRNA-1:cds;Parent=Msa1356740-mRNA-1 |
| tig0015859 | CDS | 22472 | 22985 | 22472 | ID=Msa1356740-mRNA-1:cds;Parent=Msa1356740-mRNA-1 |
| tig0015859 | CDS | 19493 | 20038 | 19493 | ID=Msa1356740-mRNA-1:cds;Parent=Msa1356740-mRNA-1 |
| tig0015859 | CDS | 19115 | 19201 | 19115 | ID=Msa1356740-mRNA-1:cds;Parent=Msa1356740-mRNA-1 |
| tig0015859 | CDS | 18386 | 18490 | 18386 | ID=Msa1356740-mRNA-1:cds;Parent=Msa1356740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
