Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637580 | XP_013443044.1 | 96.101 | 436 | 17 | 0 | 1 | 436 | 1 | 436 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637580 | sp|Q9LYR0|IQD11_ARATH | 47.234 | 470 | 182 | 18 | 4 | 436 | 3 | 443 | 9.05e-114 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0637580 | 0.812737 | 3.646357e-51 | -8.615850e-47 |
| Msa0003720 | Msa0637580 | 0.806690 | 7.276363e-50 | -8.615850e-47 |
| Msa0005890 | Msa0637580 | 0.844375 | 7.859882e-59 | -8.615850e-47 |
| Msa0024550 | Msa0637580 | 0.818387 | 2.013155e-52 | -8.615850e-47 |
| Msa0028420 | Msa0637580 | 0.821800 | 3.329325e-53 | -8.615850e-47 |
| Msa0032920 | Msa0637580 | -0.808308 | 3.301030e-50 | -8.615850e-47 |
| Msa0036830 | Msa0637580 | 0.800127 | 1.667009e-48 | -8.615850e-47 |
| Msa0042610 | Msa0637580 | 0.825371 | 4.863051e-54 | -8.615850e-47 |
| Msa0049790 | Msa0637580 | 0.807557 | 4.769659e-50 | -8.615850e-47 |
| Msa0054690 | Msa0637580 | 0.803148 | 4.003830e-49 | -8.615850e-47 |
| Msa0075220 | Msa0637580 | 0.802712 | 4.926573e-49 | -8.615850e-47 |
| Msa0081520 | Msa0637580 | 0.834938 | 2.244251e-56 | -8.615850e-47 |
| Msa0089630 | Msa0637580 | 0.815770 | 7.797312e-52 | -8.615850e-47 |
| Msa0090400 | Msa0637580 | 0.809201 | 2.127468e-50 | -8.615850e-47 |
| Msa0092790 | Msa0637580 | 0.839489 | 1.537108e-57 | -8.615850e-47 |
| Msa0094850 | Msa0637580 | 0.812577 | 3.952407e-51 | -8.615850e-47 |
| Msa0101440 | Msa0637580 | 0.800884 | 1.168725e-48 | -8.615850e-47 |
| Msa0120400 | Msa0637580 | 0.817812 | 2.715804e-52 | -8.615850e-47 |
| Msa0614000 | Msa0637580 | 0.818280 | 2.128425e-52 | -8.615850e-47 |
| Msa0625630 | Msa0637580 | 0.830772 | 2.432515e-55 | -8.615850e-47 |
| Msa0626450 | Msa0637580 | 0.859454 | 4.090132e-63 | -8.615850e-47 |
| Msa0626490 | Msa0637580 | 0.859935 | 2.930285e-63 | -8.615850e-47 |
| Msa0626510 | Msa0637580 | 0.812536 | 4.034965e-51 | -8.615850e-47 |
| Msa0637560 | Msa0637580 | 0.995262 | 1.502758e-214 | -8.615850e-47 |
| Msa0637580 | Msa0638480 | 0.845779 | 3.281416e-59 | -8.615850e-47 |
| Msa0637580 | Msa0658640 | 0.802957 | 4.383471e-49 | -8.615850e-47 |
| Msa0637580 | Msa0663300 | 0.821614 | 3.676332e-53 | -8.615850e-47 |
| Msa0637580 | Msa0664060 | 0.822060 | 2.898738e-53 | -8.615850e-47 |
| Msa0637580 | Msa0664600 | 0.860853 | 1.545957e-63 | -8.615850e-47 |
| Msa0637580 | Msa0683570 | 0.832956 | 7.029062e-56 | -8.615850e-47 |
| Msa0637580 | Msa0697160 | 0.828000 | 1.146258e-54 | -8.615850e-47 |
| Msa0637580 | Msa0721080 | 0.810892 | 9.192814e-51 | -8.615850e-47 |
| Msa0637580 | Msa0725000 | 0.801134 | 1.038930e-48 | -8.615850e-47 |
| Msa0637580 | Msa0727640 | 0.807690 | 4.468236e-50 | -8.615850e-47 |
| Msa0637580 | Msa0738040 | 0.802772 | 4.787701e-49 | -8.615850e-47 |
| Msa0637580 | Msa0741220 | 0.803033 | 4.228351e-49 | -8.615850e-47 |
| Msa0637580 | Msa0765240 | 0.800921 | 1.148608e-48 | -8.615850e-47 |
| Msa0637580 | Msa0769180 | 0.823834 | 1.118837e-53 | -8.615850e-47 |
| Msa0637580 | Msa0778590 | 0.811096 | 8.304352e-51 | -8.615850e-47 |
| Msa0637580 | Msa0795870 | 0.848202 | 7.122015e-60 | -8.615850e-47 |
| Msa0637580 | Msa0807280 | 0.801969 | 7.006068e-49 | -8.615850e-47 |
| Msa0637580 | Msa0807820 | 0.806254 | 8.995722e-50 | -8.615850e-47 |
| Msa0637580 | Msa0833650 | 0.846888 | 1.636935e-59 | -8.615850e-47 |
| Msa0637580 | Msa0835490 | 0.803542 | 3.317755e-49 | -8.615850e-47 |
| Msa0637580 | Msa0845110 | 0.801182 | 1.016077e-48 | -8.615850e-47 |
| Msa0637580 | Msa0861510 | 0.830265 | 3.237181e-55 | -8.615850e-47 |
| Msa0637580 | Msa0861530 | 0.815821 | 7.595280e-52 | -8.615850e-47 |
| Msa0637580 | Msa0861600 | 0.827028 | 1.961172e-54 | -8.615850e-47 |
| Msa0637580 | Msa0861870 | 0.801484 | 8.811782e-49 | -8.615850e-47 |
| Msa0637580 | Msa0866520 | 0.806915 | 6.521825e-50 | -8.615850e-47 |
| Msa0637580 | Msa0872830 | 0.800812 | 1.208957e-48 | -8.615850e-47 |
| Msa0637580 | Msa0896540 | 0.819545 | 1.098179e-52 | -8.615850e-47 |
| Msa0637580 | Msa0896970 | 0.804596 | 2.002619e-49 | -8.615850e-47 |
| Msa0637580 | Msa0944700 | 0.817756 | 2.796112e-52 | -8.615850e-47 |
| Msa0637580 | Msa0945110 | 0.832846 | 7.489203e-56 | -8.615850e-47 |
| Msa0637580 | Msa0967380 | 0.830286 | 3.199569e-55 | -8.615850e-47 |
| Msa0637580 | Msa0967870 | 0.819183 | 1.327468e-52 | -8.615850e-47 |
| Msa0637580 | Msa1005870 | 0.815934 | 7.166458e-52 | -8.615850e-47 |
| Msa0637580 | Msa1011530 | 0.813433 | 2.565506e-51 | -8.615850e-47 |
| Msa0637580 | Msa1019430 | 0.810800 | 9.628227e-51 | -8.615850e-47 |
| Msa0637580 | Msa1019470 | 0.817772 | 2.772895e-52 | -8.615850e-47 |
| Msa0637580 | Msa1020510 | 0.805114 | 1.560800e-49 | -8.615850e-47 |
| Msa0637580 | Msa1043370 | 0.805842 | 1.097847e-49 | -8.615850e-47 |
| Msa0637580 | Msa1045140 | 0.840255 | 9.708762e-58 | -8.615850e-47 |
| Msa0637580 | Msa1047980 | 0.815176 | 1.056923e-51 | -8.615850e-47 |
| Msa0637580 | Msa1048920 | 0.816874 | 4.415467e-52 | -8.615850e-47 |
| Msa0637580 | Msa1050910 | 0.801134 | 1.038930e-48 | -8.615850e-47 |
| Msa0637580 | Msa1051830 | 0.821326 | 4.285699e-53 | -8.615850e-47 |
| Msa0637580 | Msa1065390 | 0.801143 | 1.034568e-48 | -8.615850e-47 |
| Msa0637580 | Msa1066490 | 0.808144 | 3.577214e-50 | -8.615850e-47 |
| Msa0637580 | Msa1078170 | 0.816479 | 5.413001e-52 | -8.615850e-47 |
| Msa0637580 | Msa1087650 | 0.804004 | 2.660049e-49 | -8.615850e-47 |
| Msa0637580 | Msa1092010 | 0.822073 | 2.879143e-53 | -8.615850e-47 |
| Msa0637580 | Msa1103990 | 0.811690 | 6.170353e-51 | -8.615850e-47 |
| Msa0637580 | Msa1113340 | 0.839087 | 1.954418e-57 | -8.615850e-47 |
| Msa0637580 | Msa1123380 | 0.804733 | 1.875181e-49 | -8.615850e-47 |
| Msa0637580 | Msa1124110 | 0.805341 | 1.398578e-49 | -8.615850e-47 |
| Msa0637580 | Msa1132840 | 0.854264 | 1.382412e-61 | -8.615850e-47 |
| Msa0637580 | Msa1135390 | 0.806411 | 8.332597e-50 | -8.615850e-47 |
| Msa0637580 | Msa1140210 | 0.816204 | 6.239532e-52 | -8.615850e-47 |
| Msa0637580 | Msa1157870 | 0.811848 | 5.701370e-51 | -8.615850e-47 |
| Msa0637580 | Msa1162770 | 0.802850 | 4.613512e-49 | -8.615850e-47 |
| Msa0637580 | Msa1183120 | 0.805736 | 1.156033e-49 | -8.615850e-47 |
| Msa0637580 | Msa1186020 | 0.820310 | 7.338011e-53 | -8.615850e-47 |
| Msa0637580 | Msa1192090 | 0.817310 | 3.524680e-52 | -8.615850e-47 |
| Msa0637580 | Msa1196440 | 0.831544 | 1.572210e-55 | -8.615850e-47 |
| Msa0637580 | Msa1196450 | 0.807585 | 4.705125e-50 | -8.615850e-47 |
| Msa0637580 | Msa1199570 | 0.820578 | 6.370860e-53 | -8.615850e-47 |
| Msa0637580 | Msa1199830 | -0.801649 | 8.151458e-49 | -8.615850e-47 |
| Msa0637580 | Msa1200890 | 0.805340 | 1.399529e-49 | -8.615850e-47 |
| Msa0637580 | Msa1208160 | 0.817457 | 3.265323e-52 | -8.615850e-47 |
| Msa0637580 | Msa1208430 | 0.833080 | 6.548512e-56 | -8.615850e-47 |
| Msa0637580 | Msa1226520 | 0.806833 | 6.789541e-50 | -8.615850e-47 |
| Msa0637580 | Msa1228200 | 0.802570 | 5.268824e-49 | -8.615850e-47 |
| Msa0637580 | Msa1229500 | 0.822446 | 2.358084e-53 | -8.615850e-47 |
| Msa0637580 | Msa1232710 | 0.807432 | 5.070206e-50 | -8.615850e-47 |
| Msa0637580 | Msa1258340 | 0.800762 | 1.237708e-48 | -8.615850e-47 |
| Msa0637580 | Msa1264710 | 0.800025 | 1.748820e-48 | -8.615850e-47 |
| Msa0637580 | Msa1269480 | 0.804436 | 2.162044e-49 | -8.615850e-47 |
| Msa0637580 | Msa1271990 | 0.827626 | 1.409838e-54 | -8.615850e-47 |
| Msa0637580 | Msa1276660 | 0.812428 | 4.259933e-51 | -8.615850e-47 |
| Msa0637580 | Msa1298370 | 0.826763 | 2.269661e-54 | -8.615850e-47 |
| Msa0637580 | Msa1313300 | 0.801902 | 7.232848e-49 | -8.615850e-47 |
| Msa0637580 | Msa1320670 | 0.802897 | 4.511996e-49 | -8.615850e-47 |
| Msa0637580 | Msa1328710 | 0.824505 | 7.784158e-54 | -8.615850e-47 |
| Msa0637580 | Msa1346280 | 0.801947 | 7.080691e-49 | -8.615850e-47 |
| Msa0637580 | Msa1348090 | 0.828085 | 1.093655e-54 | -8.615850e-47 |
| Msa0637580 | Msa1356740 | 0.800736 | 1.252808e-48 | -8.615850e-47 |
| Msa0637580 | Msa1356830 | 0.815396 | 9.444046e-52 | -8.615850e-47 |
| Msa0637580 | Msa1359690 | 0.803600 | 3.226907e-49 | -8.615850e-47 |
| Msa0637580 | Msa1369150 | 0.823078 | 1.680927e-53 | -8.615850e-47 |
| Msa0637580 | Msa1371520 | 0.800660 | 1.298851e-48 | -8.615850e-47 |
| Msa0637580 | Msa1372230 | 0.817156 | 3.816958e-52 | -8.615850e-47 |
| Msa0637580 | Msa1373100 | 0.819918 | 9.021353e-53 | -8.615850e-47 |
| Msa0637580 | Msa1374040 | 0.815572 | 8.630977e-52 | -8.615850e-47 |
| Msa0637580 | Msa1374060 | 0.817815 | 2.711751e-52 | -8.615850e-47 |
| Msa0637580 | Msa1374550 | 0.816948 | 4.249378e-52 | -8.615850e-47 |
| Msa0637580 | Msa1382560 | 0.814535 | 1.466063e-51 | -8.615850e-47 |
| Msa0637580 | Msa1422420 | 0.801034 | 1.089436e-48 | -8.615850e-47 |
| Msa0637580 | Msa1422950 | 0.819530 | 1.106579e-52 | -8.615850e-47 |
| Msa0637580 | Msa1437940 | 0.815159 | 1.066214e-51 | -8.615850e-47 |
| Msa0637580 | Msa1439610 | 0.801618 | 8.269251e-49 | -8.615850e-47 |
| Msa0637580 | Msa1440880 | 0.805893 | 1.071154e-49 | -8.615850e-47 |
| Msa0637580 | Msa1440960 | 0.850631 | 1.498731e-60 | -8.615850e-47 |
| Msa0637580 | Msa1445190 | 0.819214 | 1.305978e-52 | -8.615850e-47 |
| Msa0637580 | Msa1446810 | 0.834853 | 2.356641e-56 | -8.615850e-47 |
| Msa0637580 | Msa1451160 | 0.819219 | 1.302701e-52 | -8.615850e-47 |
| Msa0637580 | Msa1459380 | 0.802940 | 4.419032e-49 | -8.615850e-47 |
| Msa0637580 | Msa1464810 | 0.802038 | 6.781052e-49 | -8.615850e-47 |
| Msa0637580 | Msa1465440 | 0.805880 | 1.078026e-49 | -8.615850e-47 |
| Msa0124060 | Msa0637580 | 0.814819 | 1.268504e-51 | -8.615850e-47 |
| Msa0131900 | Msa0637580 | 0.826961 | 2.034910e-54 | -8.615850e-47 |
| Msa0136650 | Msa0637580 | 0.827391 | 1.605885e-54 | -8.615850e-47 |
| Msa0137880 | Msa0637580 | 0.803959 | 2.717834e-49 | -8.615850e-47 |
| Msa0146260 | Msa0637580 | 0.808970 | 2.384189e-50 | -8.615850e-47 |
| Msa0146280 | Msa0637580 | 0.815779 | 7.762830e-52 | -8.615850e-47 |
| Msa0164330 | Msa0637580 | 0.803239 | 3.833101e-49 | -8.615850e-47 |
| Msa0167520 | Msa0637580 | 0.801098 | 1.056893e-48 | -8.615850e-47 |
| Msa0168500 | Msa0637580 | 0.828898 | 6.958372e-55 | -8.615850e-47 |
| Msa0173890 | Msa0637580 | 0.815755 | 7.856685e-52 | -8.615850e-47 |
| Msa0178560 | Msa0637580 | 0.805062 | 1.600291e-49 | -8.615850e-47 |
| Msa0186010 | Msa0637580 | 0.805181 | 1.511369e-49 | -8.615850e-47 |
| Msa0197420 | Msa0637580 | 0.806060 | 9.881286e-50 | -8.615850e-47 |
| Msa0213280 | Msa0637580 | 0.811680 | 6.203652e-51 | -8.615850e-47 |
| Msa0221000 | Msa0637580 | 0.831756 | 1.393533e-55 | -8.615850e-47 |
| Msa0221290 | Msa0637580 | 0.803589 | 3.243843e-49 | -8.615850e-47 |
| Msa0225100 | Msa0637580 | 0.806689 | 7.281126e-50 | -8.615850e-47 |
| Msa0225460 | Msa0637580 | 0.807871 | 4.090543e-50 | -8.615850e-47 |
| Msa0225680 | Msa0637580 | 0.814654 | 1.379824e-51 | -8.615850e-47 |
| Msa0225860 | Msa0637580 | 0.830978 | 2.165378e-55 | -8.615850e-47 |
| Msa0230740 | Msa0637580 | 0.802604 | 5.185103e-49 | -8.615850e-47 |
| Msa0233730 | Msa0637580 | 0.802138 | 6.468318e-49 | -8.615850e-47 |
| Msa0371030 | Msa0637580 | 0.812169 | 4.853461e-51 | -8.615850e-47 |
| Msa0378720 | Msa0637580 | 0.843858 | 1.082191e-58 | -8.615850e-47 |
| Msa0380620 | Msa0637580 | 0.820761 | 5.780570e-53 | -8.615850e-47 |
| Msa0385390 | Msa0637580 | 0.806566 | 7.730763e-50 | -8.615850e-47 |
| Msa0392420 | Msa0637580 | 0.826301 | 2.923817e-54 | -8.615850e-47 |
| Msa0392460 | Msa0637580 | 0.826003 | 3.443628e-54 | -8.615850e-47 |
| Msa0392490 | Msa0637580 | 0.813806 | 2.123971e-51 | -8.615850e-47 |
| Msa0392510 | Msa0637580 | 0.818606 | 1.795915e-52 | -8.615850e-47 |
| Msa0415320 | Msa0637580 | 0.811134 | 8.149807e-51 | -8.615850e-47 |
| Msa0417880 | Msa0637580 | 0.807820 | 4.194070e-50 | -8.615850e-47 |
| Msa0422850 | Msa0637580 | 0.809928 | 1.484593e-50 | -8.615850e-47 |
| Msa0422930 | Msa0637580 | 0.813019 | 3.162768e-51 | -8.615850e-47 |
| Msa0428150 | Msa0637580 | 0.800139 | 1.658120e-48 | -8.615850e-47 |
| Msa0428370 | Msa0637580 | 0.816051 | 6.747616e-52 | -8.615850e-47 |
| Msa0430260 | Msa0637580 | 0.828307 | 9.668513e-55 | -8.615850e-47 |
| Msa0430300 | Msa0637580 | 0.803833 | 2.885945e-49 | -8.615850e-47 |
| Msa0447370 | Msa0637580 | 0.803354 | 3.629059e-49 | -8.615850e-47 |
| Msa0467430 | Msa0637580 | 0.818583 | 1.817382e-52 | -8.615850e-47 |
| Msa0474730 | Msa0637580 | 0.837116 | 6.285044e-57 | -8.615850e-47 |
| Msa0475790 | Msa0637580 | 0.815882 | 7.361940e-52 | -8.615850e-47 |
| Msa0479170 | Msa0637580 | 0.824384 | 8.312638e-54 | -8.615850e-47 |
| Msa0479200 | Msa0637580 | 0.802563 | 5.288041e-49 | -8.615850e-47 |
| Msa0239030 | Msa0637580 | 0.801356 | 9.359977e-49 | -8.615850e-47 |
| Msa0239190 | Msa0637580 | 0.806865 | 6.683282e-50 | -8.615850e-47 |
| Msa0239570 | Msa0637580 | 0.802209 | 6.254880e-49 | -8.615850e-47 |
| Msa0247940 | Msa0637580 | 0.811275 | 7.593676e-51 | -8.615850e-47 |
| Msa0255090 | Msa0637580 | 0.818815 | 1.609393e-52 | -8.615850e-47 |
| Msa0259380 | Msa0637580 | 0.821060 | 4.934506e-53 | -8.615850e-47 |
| Msa0261340 | Msa0637580 | 0.802665 | 5.037391e-49 | -8.615850e-47 |
| Msa0267110 | Msa0637580 | 0.841694 | 4.067312e-58 | -8.615850e-47 |
| Msa0277180 | Msa0637580 | 0.818123 | 2.309668e-52 | -8.615850e-47 |
| Msa0287740 | Msa0637580 | 0.817788 | 2.749455e-52 | -8.615850e-47 |
| Msa0292400 | Msa0637580 | 0.825910 | 3.622585e-54 | -8.615850e-47 |
| Msa0298470 | Msa0637580 | 0.805057 | 1.604217e-49 | -8.615850e-47 |
| Msa0298500 | Msa0637580 | 0.801445 | 8.974346e-49 | -8.615850e-47 |
| Msa0300270 | Msa0637580 | 0.839244 | 1.779833e-57 | -8.615850e-47 |
| Msa0300320 | Msa0637580 | 0.832784 | 7.759921e-56 | -8.615850e-47 |
| Msa0300690 | Msa0637580 | 0.802990 | 4.315606e-49 | -8.615850e-47 |
| Msa0316810 | Msa0637580 | 0.810822 | 9.520100e-51 | -8.615850e-47 |
| Msa0330340 | Msa0637580 | 0.801387 | 9.222833e-49 | -8.615850e-47 |
| Msa0337700 | Msa0637580 | 0.847518 | 1.099417e-59 | -8.615850e-47 |
| Msa0339500 | Msa0637580 | 0.845853 | 3.134472e-59 | -8.615850e-47 |
| Msa0341690 | Msa0637580 | 0.805580 | 1.246549e-49 | -8.615850e-47 |
| Msa0487570 | Msa0637580 | 0.822570 | 2.207578e-53 | -8.615850e-47 |
| Msa0487630 | Msa0637580 | 0.820920 | 5.315863e-53 | -8.615850e-47 |
| Msa0500380 | Msa0637580 | 0.804190 | 2.433167e-49 | -8.615850e-47 |
| Msa0513160 | Msa0637580 | 0.820833 | 5.566480e-53 | -8.615850e-47 |
| Msa0527190 | Msa0637580 | 0.806528 | 7.873780e-50 | -8.615850e-47 |
| Msa0527860 | Msa0637580 | 0.837161 | 6.118395e-57 | -8.615850e-47 |
| Msa0535040 | Msa0637580 | 0.810575 | 1.076929e-50 | -8.615850e-47 |
| Msa0545340 | Msa0637580 | 0.817665 | 2.931758e-52 | -8.615850e-47 |
| Msa0548470 | Msa0637580 | 0.811304 | 7.487096e-51 | -8.615850e-47 |
| Msa0565090 | Msa0637580 | 0.819136 | 1.361050e-52 | -8.615850e-47 |
| Msa0569200 | Msa0637580 | 0.805675 | 1.190573e-49 | -8.615850e-47 |
| Msa0574890 | Msa0637580 | 0.804962 | 1.678958e-49 | -8.615850e-47 |
| Msa0580370 | Msa0637580 | 0.849463 | 3.183021e-60 | -8.615850e-47 |
| Msa0582450 | Msa0637580 | 0.816992 | 4.153410e-52 | -8.615850e-47 |
| Msa0586190 | Msa0637580 | 0.819217 | 1.303887e-52 | -8.615850e-47 |
| Msa0591790 | Msa0637580 | 0.823783 | 1.149802e-53 | -8.615850e-47 |
| Msa0597790 | Msa0637580 | 0.889107 | 3.257106e-73 | -8.615850e-47 |
| Msa0600930 | Msa0637580 | 0.843535 | 1.320438e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637580 | MtrunA17_Chr4g0020671 | 96.101 | 436 | 17 | 0 | 1 | 436 | 1 | 436 | 0.0 | 859 |
| Msa0637580 | MtrunA17_Chr7g0273861 | 53.616 | 401 | 150 | 10 | 5 | 376 | 3 | 396 | 1.54e-125 | 370 |
| Msa0637580 | MtrunA17_Chr1g0172611 | 33.333 | 393 | 197 | 10 | 4 | 365 | 3 | 361 | 1.10e-44 | 159 |
| Msa0637580 | MtrunA17_Chr4g0045641 | 29.793 | 386 | 205 | 14 | 100 | 427 | 145 | 522 | 2.76e-33 | 131 |
| Msa0637580 | MtrunA17_Chr1g0181581 | 29.762 | 420 | 210 | 15 | 1 | 348 | 1 | 407 | 1.40e-31 | 125 |
| Msa0637580 | MtrunA17_Chr7g0263731 | 30.937 | 459 | 213 | 21 | 4 | 380 | 3 | 439 | 2.38e-29 | 119 |
| Msa0637580 | MtrunA17_Chr6g0462191 | 31.834 | 289 | 152 | 9 | 100 | 348 | 106 | 389 | 1.52e-27 | 113 |
| Msa0637580 | MtrunA17_Chr8g0346021 | 29.338 | 317 | 147 | 13 | 1 | 257 | 1 | 300 | 1.19e-23 | 103 |
| Msa0637580 | MtrunA17_Chr1g0200161 | 26.910 | 301 | 170 | 7 | 4 | 254 | 3 | 303 | 2.06e-23 | 102 |
| Msa0637580 | MtrunA17_Chr4g0025441 | 28.889 | 360 | 197 | 12 | 100 | 426 | 95 | 428 | 3.48e-21 | 95.5 |
| Msa0637580 | MtrunA17_Chr3g0126901 | 25.714 | 385 | 241 | 11 | 1 | 357 | 1 | 368 | 1.18e-20 | 94.0 |
| Msa0637580 | MtrunA17_Chr1g0204901 | 30.970 | 268 | 147 | 10 | 97 | 356 | 132 | 369 | 1.81e-20 | 93.2 |
| Msa0637580 | MtrunA17_Chr1g0146931 | 27.869 | 305 | 168 | 10 | 100 | 359 | 121 | 418 | 7.06e-19 | 88.6 |
| Msa0637580 | MtrunA17_Chr8g0389781 | 60.000 | 60 | 24 | 0 | 100 | 159 | 125 | 184 | 1.36e-17 | 84.7 |
| Msa0637580 | MtrunA17_Chr3g0135851 | 29.703 | 202 | 114 | 5 | 90 | 268 | 80 | 276 | 1.50e-17 | 84.3 |
| Msa0637580 | MtrunA17_Chr1g0203711 | 31.122 | 196 | 109 | 6 | 9 | 180 | 1 | 194 | 6.40e-17 | 82.4 |
| Msa0637580 | MtrunA17_Chr6g0472551 | 45.570 | 79 | 41 | 1 | 92 | 168 | 106 | 184 | 6.52e-17 | 82.8 |
| Msa0637580 | MtrunA17_Chr2g0283321 | 33.908 | 174 | 82 | 4 | 99 | 254 | 61 | 219 | 1.80e-16 | 79.7 |
| Msa0637580 | MtrunA17_Chr1g0166431 | 62.069 | 58 | 22 | 0 | 96 | 153 | 112 | 169 | 5.91e-16 | 79.7 |
| Msa0637580 | MtrunA17_Chr4g0057321 | 28.000 | 300 | 168 | 8 | 95 | 356 | 82 | 371 | 7.42e-16 | 79.3 |
| Msa0637580 | MtrunA17_Chr4g0060381 | 37.615 | 109 | 63 | 1 | 51 | 159 | 55 | 158 | 1.99e-15 | 78.6 |
| Msa0637580 | MtrunA17_Chr8g0340761 | 49.351 | 77 | 39 | 0 | 103 | 179 | 128 | 204 | 2.19e-15 | 77.8 |
| Msa0637580 | MtrunA17_Chr8g0371131 | 34.868 | 152 | 74 | 6 | 31 | 173 | 5 | 140 | 3.31e-15 | 72.4 |
| Msa0637580 | MtrunA17_Chr7g0273951 | 50.000 | 66 | 33 | 0 | 103 | 168 | 108 | 173 | 3.79e-15 | 76.6 |
| Msa0637580 | MtrunA17_Chr2g0330921 | 29.801 | 151 | 87 | 2 | 32 | 163 | 9 | 159 | 2.07e-14 | 74.3 |
| Msa0637580 | MtrunA17_Chr2g0316401 | 26.667 | 210 | 132 | 5 | 64 | 254 | 26 | 232 | 2.52e-12 | 67.4 |
| Msa0637580 | MtrunA17_Chr1g0156121 | 42.683 | 82 | 45 | 1 | 94 | 173 | 117 | 198 | 4.67e-12 | 68.2 |
| Msa0637580 | MtrunA17_Chr8g0342551 | 40.000 | 130 | 73 | 2 | 100 | 228 | 89 | 214 | 1.66e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637580 | AT5G13460.1 | 47.234 | 470 | 182 | 18 | 4 | 436 | 3 | 443 | 9.20e-115 | 343 |
| Msa0637580 | AT5G03960.3 | 33.766 | 385 | 216 | 13 | 4 | 367 | 3 | 369 | 8.42e-37 | 139 |
| Msa0637580 | AT5G03960.2 | 33.766 | 385 | 216 | 13 | 4 | 367 | 3 | 369 | 8.42e-37 | 139 |
| Msa0637580 | AT2G43680.4 | 31.653 | 357 | 196 | 12 | 98 | 426 | 319 | 655 | 1.13e-36 | 142 |
| Msa0637580 | AT2G43680.2 | 31.653 | 357 | 196 | 12 | 98 | 426 | 319 | 655 | 1.13e-36 | 142 |
| Msa0637580 | AT2G43680.3 | 31.653 | 357 | 196 | 12 | 98 | 426 | 319 | 655 | 1.13e-36 | 142 |
| Msa0637580 | AT2G43680.5 | 31.653 | 357 | 196 | 12 | 98 | 426 | 319 | 655 | 1.13e-36 | 142 |
| Msa0637580 | AT2G43680.1 | 31.742 | 356 | 195 | 12 | 99 | 426 | 321 | 656 | 1.19e-36 | 142 |
| Msa0637580 | AT3G52290.1 | 30.435 | 391 | 214 | 14 | 6 | 348 | 3 | 383 | 3.35e-36 | 138 |
| Msa0637580 | AT5G03960.1 | 33.506 | 385 | 216 | 14 | 4 | 367 | 3 | 368 | 1.34e-34 | 133 |
| Msa0637580 | AT3G59690.2 | 31.933 | 357 | 197 | 12 | 99 | 427 | 167 | 505 | 1.83e-34 | 135 |
| Msa0637580 | AT3G59690.1 | 31.933 | 357 | 197 | 12 | 99 | 427 | 167 | 505 | 1.83e-34 | 135 |
| Msa0637580 | AT5G03040.1 | 28.224 | 411 | 230 | 14 | 1 | 351 | 1 | 406 | 2.59e-31 | 125 |
| Msa0637580 | AT5G03040.3 | 28.224 | 411 | 230 | 14 | 1 | 351 | 1 | 406 | 2.59e-31 | 125 |
| Msa0637580 | AT5G03040.2 | 28.224 | 411 | 230 | 14 | 1 | 351 | 1 | 406 | 2.59e-31 | 125 |
| Msa0637580 | AT4G10640.1 | 29.925 | 401 | 201 | 17 | 1 | 356 | 1 | 366 | 4.05e-25 | 107 |
| Msa0637580 | AT1G01110.2 | 26.329 | 395 | 193 | 12 | 92 | 406 | 112 | 488 | 4.26e-23 | 102 |
| Msa0637580 | AT3G49260.1 | 34.286 | 175 | 94 | 6 | 103 | 257 | 122 | 295 | 5.26e-23 | 101 |
| Msa0637580 | AT3G49260.4 | 34.286 | 175 | 94 | 6 | 103 | 257 | 122 | 295 | 5.26e-23 | 101 |
| Msa0637580 | AT3G49260.2 | 34.286 | 175 | 94 | 6 | 103 | 257 | 122 | 295 | 5.26e-23 | 101 |
| Msa0637580 | AT3G49260.3 | 33.143 | 175 | 97 | 5 | 103 | 257 | 122 | 296 | 1.62e-22 | 100 |
| Msa0637580 | AT2G26180.1 | 30.183 | 328 | 182 | 12 | 60 | 349 | 47 | 365 | 1.32e-20 | 94.0 |
| Msa0637580 | AT4G14750.1 | 32.020 | 203 | 112 | 6 | 2 | 190 | 14 | 204 | 3.09e-20 | 92.4 |
| Msa0637580 | AT4G14750.2 | 31.884 | 207 | 115 | 6 | 2 | 194 | 73 | 267 | 3.94e-20 | 92.8 |
| Msa0637580 | AT4G14750.3 | 31.884 | 207 | 115 | 6 | 2 | 194 | 73 | 267 | 4.43e-20 | 92.8 |
| Msa0637580 | AT4G00820.1 | 31.148 | 244 | 125 | 9 | 39 | 254 | 74 | 302 | 6.74e-20 | 92.4 |
| Msa0637580 | AT1G72670.1 | 34.706 | 170 | 90 | 5 | 100 | 254 | 92 | 255 | 4.35e-19 | 89.4 |
| Msa0637580 | AT3G09710.2 | 26.804 | 388 | 216 | 12 | 57 | 380 | 60 | 443 | 7.52e-19 | 89.0 |
| Msa0637580 | AT3G09710.1 | 26.984 | 378 | 214 | 13 | 57 | 380 | 60 | 429 | 8.00e-19 | 89.0 |
| Msa0637580 | AT1G17480.1 | 37.121 | 132 | 69 | 3 | 100 | 231 | 93 | 210 | 7.38e-18 | 85.1 |
| Msa0637580 | AT3G22190.3 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.19e-17 | 84.3 |
| Msa0637580 | AT3G22190.2 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.19e-17 | 84.3 |
| Msa0637580 | AT3G22190.4 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.19e-17 | 84.3 |
| Msa0637580 | AT3G22190.1 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.19e-17 | 84.3 |
| Msa0637580 | AT4G23060.1 | 29.206 | 315 | 153 | 10 | 97 | 378 | 163 | 440 | 5.85e-17 | 83.2 |
| Msa0637580 | AT2G26410.2 | 28.351 | 194 | 119 | 4 | 94 | 273 | 141 | 328 | 5.60e-16 | 80.5 |
| Msa0637580 | AT2G26410.1 | 28.351 | 194 | 119 | 4 | 94 | 273 | 141 | 328 | 5.60e-16 | 80.5 |
| Msa0637580 | AT2G33990.1 | 32.927 | 164 | 100 | 4 | 101 | 257 | 47 | 207 | 7.92e-16 | 77.8 |
| Msa0637580 | AT3G16490.1 | 50.000 | 66 | 33 | 0 | 99 | 164 | 105 | 170 | 1.90e-15 | 78.2 |
| Msa0637580 | AT1G18840.1 | 41.228 | 114 | 57 | 4 | 56 | 164 | 64 | 172 | 1.94e-15 | 79.0 |
| Msa0637580 | AT1G18840.3 | 41.228 | 114 | 57 | 4 | 56 | 164 | 64 | 172 | 1.94e-15 | 79.0 |
| Msa0637580 | AT1G18840.2 | 41.228 | 114 | 57 | 4 | 56 | 164 | 64 | 172 | 1.94e-15 | 79.0 |
| Msa0637580 | AT4G29150.1 | 47.436 | 78 | 38 | 1 | 82 | 159 | 115 | 189 | 8.86e-15 | 76.3 |
| Msa0637580 | AT1G74690.1 | 46.154 | 91 | 31 | 2 | 94 | 169 | 109 | 196 | 9.44e-15 | 76.6 |
| Msa0637580 | AT1G51960.1 | 53.226 | 62 | 29 | 0 | 103 | 164 | 102 | 163 | 1.70e-14 | 75.1 |
| Msa0637580 | AT5G07240.1 | 52.542 | 59 | 28 | 0 | 103 | 161 | 108 | 166 | 2.36e-14 | 74.7 |
| Msa0637580 | AT5G07240.2 | 52.542 | 59 | 28 | 0 | 103 | 161 | 154 | 212 | 2.78e-14 | 75.1 |
| Msa0637580 | AT5G62070.1 | 55.556 | 54 | 24 | 0 | 102 | 155 | 118 | 171 | 1.58e-13 | 72.4 |
| Msa0637580 | AT3G49380.1 | 34.307 | 137 | 71 | 3 | 24 | 157 | 46 | 166 | 1.87e-13 | 71.6 |
| Msa0637580 | AT3G15050.1 | 32.609 | 138 | 88 | 2 | 101 | 237 | 50 | 183 | 6.98e-12 | 65.9 |
| Msa0637580 | AT3G51380.1 | 47.692 | 65 | 34 | 0 | 100 | 164 | 36 | 100 | 2.11e-11 | 60.8 |
| Msa0637580 | AT1G14380.6 | 49.153 | 59 | 30 | 0 | 101 | 159 | 94 | 152 | 5.31e-11 | 65.1 |
| Msa0637580 | AT1G14380.5 | 49.153 | 59 | 30 | 0 | 101 | 159 | 94 | 152 | 5.31e-11 | 65.1 |
| Msa0637580 | AT1G14380.2 | 49.153 | 59 | 30 | 0 | 101 | 159 | 94 | 152 | 5.31e-11 | 65.1 |
| Msa0637580 | AT1G14380.7 | 49.153 | 59 | 30 | 0 | 101 | 159 | 94 | 152 | 5.33e-11 | 65.1 |
| Msa0637580 | AT1G14380.1 | 46.032 | 63 | 34 | 0 | 101 | 163 | 94 | 156 | 5.44e-11 | 65.1 |
| Msa0637580 | AT1G14380.3 | 46.032 | 63 | 34 | 0 | 101 | 163 | 94 | 156 | 5.44e-11 | 65.1 |
| Msa0637580 | AT1G14380.4 | 46.032 | 63 | 34 | 0 | 101 | 163 | 94 | 156 | 5.44e-11 | 65.1 |
Find 115 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCCACATTCTTGATTT+TGG | 0.128829 | 4_3:-29687521 | Msa0637580:five_prime_UTR |
| GTTCTAAAGACAAGATAATT+AGG | 0.184028 | 4_3:-29685246 | Msa0637580:CDS |
| TCCAAATGGTTGAAGGAAAA+TGG | 0.192772 | 4_3:-29685297 | Msa0637580:CDS |
| TCTAAAATCGGTGACGAATT+TGG | 0.198095 | 4_3:-29684551 | Msa0637580:CDS |
| TCAAAATTCAAACTGCCTTT+AGG | 0.203753 | 4_3:-29686492 | Msa0637580:CDS |
| TCCAATCCTTCAACTGGATT+TGG | 0.229739 | 4_3:+29684488 | None:intergenic |
| CAGATAGCTCACTGCCTAAT+TGG | 0.230370 | 4_3:-29684109 | Msa0637580:CDS |
| CAAAATTCAAACTGCCTTTA+GGG | 0.238522 | 4_3:-29686491 | Msa0637580:CDS |
| TTCAATAGAATGTGTTTAGA+TGG | 0.287264 | 4_3:-29683798 | Msa0637580:three_prime_UTR |
| ATGTGTTTGAATGTTTATTT+TGG | 0.291236 | 4_3:-29683957 | Msa0637580:three_prime_UTR |
| AAAAGAAGGAAATGGATATT+TGG | 0.296004 | 4_3:-29686721 | Msa0637580:CDS |
| CACTAAGCTTGCCTCTATTA+AGG | 0.318000 | 4_3:+29684219 | None:intergenic |
| TATTCTTTCTCTCTTAATAA+TGG | 0.318278 | 4_3:+29685029 | None:intergenic |
| GAACTTTGTCTATCCCAATT+AGG | 0.328904 | 4_3:+29684095 | None:intergenic |
| TACTGATATGTTAAAATGTT+TGG | 0.331383 | 4_3:-29684053 | Msa0637580:three_prime_UTR |
| GAATTTCTGCCCTTTCAAAT+AGG | 0.333791 | 4_3:-29687594 | Msa0637580:five_prime_UTR |
| GAAATTCCTCTTTGCCTTCA+TGG | 0.340724 | 4_3:+29687749 | None:intergenic |
| ATCTTCAGAATCAGAATGTT+TGG | 0.344137 | 4_3:+29686624 | None:intergenic |
| GCCATGTATGCCGGAGTTGC+CGG | 0.349143 | 4_3:+29684383 | None:intergenic |
| AAAATCAAGCAGGACTATAA+AGG | 0.350189 | 4_3:-29684147 | Msa0637580:CDS |
| TAGTTCCAAGACCTTGCTTT+TGG | 0.367342 | 4_3:+29684317 | None:intergenic |
| TCCTTGCACAAATCTTTGAT+TGG | 0.374460 | 4_3:+29685323 | None:intergenic |
| GATCATAATTCCTTGTATCA+TGG | 0.391427 | 4_3:-29684031 | Msa0637580:three_prime_UTR |
| TTACTATAAAGAATGTTTGC+TGG | 0.393081 | 4_3:-29687489 | Msa0637580:five_prime_UTR |
| GGTGATTCCAATCCTTCAAC+TGG | 0.395148 | 4_3:+29684482 | None:intergenic |
| AGAAGGAGAAAAGAAGGAAA+TGG | 0.396134 | 4_3:-29686729 | Msa0637580:CDS |
| AAGAATGTTTGCTGGTTTCA+AGG | 0.398592 | 4_3:-29687481 | Msa0637580:five_prime_UTR |
| GTATCATTAGCTTCATTTGA+AGG | 0.398734 | 4_3:+29684073 | None:intergenic |
| AAATTCCTCTTTGCCTTCAT+GGG | 0.398795 | 4_3:+29687750 | None:intergenic |
| CCGGAGAGCTTGACAATGAT+TGG | 0.404978 | 4_3:+29684402 | None:intergenic |
| TACAGCTCACATTCTAAAAT+CGG | 0.405037 | 4_3:-29684563 | Msa0637580:CDS |
| TAAAACTAGGAGATCTTTGT+TGG | 0.405800 | 4_3:+29684189 | None:intergenic |
| AGATAGCTCACTGCCTAATT+GGG | 0.412832 | 4_3:-29684108 | Msa0637580:CDS |
| CCAAATGGTTGAAGGAAAAT+GGG | 0.421909 | 4_3:-29685296 | Msa0637580:CDS |
| TCAATAGAATGTGTTTAGAT+GGG | 0.423672 | 4_3:-29683797 | Msa0637580:three_prime_UTR |
| AATCAAGAATGTGGAAACTT+TGG | 0.423828 | 4_3:+29687525 | None:intergenic |
| TCAGAAAGAAGTAAAGTGAA+TGG | 0.437880 | 4_3:-29684665 | Msa0637580:CDS |
| AGGCACCGTTTGGAAGAAAT+AGG | 0.438762 | 4_3:+29687408 | None:intergenic |
| AAAATTCTTTAATCTCCCTC+TGG | 0.440216 | 4_3:+29686521 | None:intergenic |
| TTCTAAAGACAAGATAATTA+GGG | 0.440984 | 4_3:-29685245 | Msa0637580:intron |
| AAAAGACAAGAGGCACCGTT+TGG | 0.442166 | 4_3:+29687398 | None:intergenic |
| TCCAAATCCAGTTGAAGGAT+TGG | 0.443208 | 4_3:-29684489 | Msa0637580:CDS |
| CTTAATAGAGGCAAGCTTAG+TGG | 0.449370 | 4_3:-29684218 | Msa0637580:CDS |
| GAATTTCTTGAAAATAGTAT+TGG | 0.453636 | 4_3:+29684461 | None:intergenic |
| CAAGAATGTGGAAACTTTGG+TGG | 0.455525 | 4_3:+29687528 | None:intergenic |
| CATTTAGCAATATGATCAAA+AGG | 0.457277 | 4_3:+29686919 | None:intergenic |
| CAAAATCCAAATCCAGTTGA+AGG | 0.460055 | 4_3:-29684494 | Msa0637580:CDS |
| GAGGTACTGGCTGGAGCAAT+GGG | 0.470588 | 4_3:-29684636 | Msa0637580:CDS |
| CACAGGAGGAAGTGTTCAAT+AGG | 0.472141 | 4_3:-29684431 | Msa0637580:CDS |
| TCCGGCAACTCCGGCATACA+TGG | 0.476116 | 4_3:-29684384 | Msa0637580:CDS |
| GAAGTAAAGTGAATGGAAGA+TGG | 0.476780 | 4_3:-29684658 | Msa0637580:CDS |
| GAAGGCCTTGAGGGCATTGA+AGG | 0.479233 | 4_3:-29685437 | Msa0637580:CDS |
| AAGATTCTTTCCTATTTGAA+AGG | 0.479896 | 4_3:+29687584 | None:intergenic |
| TCTTCAGAGTATTCATAGCT+TGG | 0.482970 | 4_3:+29685368 | None:intergenic |
| ATCATAATTCCTTGTATCAT+GGG | 0.489613 | 4_3:-29684030 | Msa0637580:three_prime_UTR |
| AACAGTGAAGTCCTTAATAG+AGG | 0.490528 | 4_3:-29684230 | Msa0637580:CDS |
| AGGCATGTTCATGTGTCTGT+TGG | 0.490884 | 4_3:+29687816 | None:intergenic |
| GGCATGTTCATGTGTCTGTT+GGG | 0.491128 | 4_3:+29687817 | None:intergenic |
| TGTTCATGGACAGGCAAAGA+AGG | 0.491711 | 4_3:-29685455 | Msa0637580:intron |
| AAACTTCAAGCTATCATTCG+TGG | 0.499142 | 4_3:-29685406 | Msa0637580:CDS |
| CCAATCATTGTCAAGCTCTC+CGG | 0.502381 | 4_3:-29684402 | Msa0637580:CDS |
| ACAGGCAAAGAAGGCCTTGA+GGG | 0.502406 | 4_3:-29685446 | Msa0637580:intron |
| TTATCTTTGCTATTTCATGA+TGG | 0.508588 | 4_3:-29687881 | Msa0637580:five_prime_UTR |
| GGAGGTACTGGCTGGAGCAA+TGG | 0.509178 | 4_3:-29684637 | Msa0637580:CDS |
| ACTCACAAGGTAACCCCTAA+AGG | 0.511074 | 4_3:+29686477 | None:intergenic |
| GTTCACCAAAAGCAAGGTCT+TGG | 0.512945 | 4_3:-29684322 | Msa0637580:CDS |
| CTGCAGTCATTAACTTGAGA+TGG | 0.516273 | 4_3:+29687450 | None:intergenic |
| AGATTCTTTCCTATTTGAAA+GGG | 0.517957 | 4_3:+29687585 | None:intergenic |
| AATAGGTGCATGGGAACAAA+GGG | 0.522008 | 4_3:+29687425 | None:intergenic |
| GTCAAGCTCTCCGGCAACTC+CGG | 0.529311 | 4_3:-29684393 | Msa0637580:CDS |
| GACATGCACATTTAAATGAA+AGG | 0.532027 | 4_3:-29687914 | Msa0637580:five_prime_UTR |
| GAAGGAAATGGATATTTGGA+AGG | 0.532923 | 4_3:-29686717 | Msa0637580:CDS |
| ACTCAAACAGTCAAAGAAAG+TGG | 0.539967 | 4_3:-29685110 | Msa0637580:CDS |
| AGGAGACTCCAAATGGTTGA+AGG | 0.541413 | 4_3:-29685304 | Msa0637580:CDS |
| TGAATGGAAGATGGAGGTAC+TGG | 0.544699 | 4_3:-29684649 | Msa0637580:CDS |
| GGATGACAGTACATTATTGA+AGG | 0.551794 | 4_3:-29685088 | Msa0637580:CDS |
| TCAGTAGCAGCCATGTATGC+CGG | 0.554373 | 4_3:+29684374 | None:intergenic |
| TCAAGCCCTCCCATGATACA+AGG | 0.554446 | 4_3:+29684021 | None:intergenic |
| TTGTGCAAGGAGACTCCAAA+TGG | 0.554466 | 4_3:-29685311 | Msa0637580:CDS |
| TGGAAGATGGAGGTACTGGC+TGG | 0.555626 | 4_3:-29684645 | Msa0637580:CDS |
| ATGCACCTATTTCTTCCAAA+CGG | 0.556416 | 4_3:-29687413 | Msa0637580:five_prime_UTR |
| CTCAACCTATCAAAATCCAG+AGG | 0.560910 | 4_3:-29686537 | Msa0637580:CDS |
| GTTATATCATAGTTTAGTGA+AGG | 0.565875 | 4_3:-29687859 | Msa0637580:five_prime_UTR |
| AAATAGGTGCATGGGAACAA+AGG | 0.566155 | 4_3:+29687424 | None:intergenic |
| CAGTACATTATTGAAGGAAG+AGG | 0.569837 | 4_3:-29685082 | Msa0637580:CDS |
| TAATTCCTTGTATCATGGGA+GGG | 0.573248 | 4_3:-29684026 | Msa0637580:three_prime_UTR |
| AAAATTCAAACTGCCTTTAG+GGG | 0.573375 | 4_3:-29686490 | Msa0637580:CDS |
| ATTTAGCAATATGATCAAAA+GGG | 0.575789 | 4_3:+29686920 | None:intergenic |
| CTCACATTCTACACAAGAGA+AGG | 0.576649 | 4_3:-29686843 | Msa0637580:intron |
| AAAATCGGTGACGAATTTGG+AGG | 0.576765 | 4_3:-29684548 | Msa0637580:CDS |
| AGTCACCAAAATCAAGAATG+TGG | 0.584098 | 4_3:+29687516 | None:intergenic |
| TATTCCCTTCAATGCCCTCA+AGG | 0.584662 | 4_3:+29685432 | None:intergenic |
| GTTGGTGGAGCTGTAATTGA+AGG | 0.587261 | 4_3:+29686676 | None:intergenic |
| ACTGAAATACCCTTAAAACT+AGG | 0.588800 | 4_3:+29684176 | None:intergenic |
| CAATAGAATGTGTTTAGATG+GGG | 0.589383 | 4_3:-29683796 | Msa0637580:three_prime_UTR |
| GCTCATGAAGATAAATGCAT+AGG | 0.590914 | 4_3:+29687709 | None:intergenic |
| CTCAAACAGTCAAAGAAAGT+GGG | 0.591986 | 4_3:-29685109 | Msa0637580:CDS |
| AAATTGAAAAGGACCCATGA+AGG | 0.594324 | 4_3:-29687763 | Msa0637580:five_prime_UTR |
| CAGTGCCTATAAAATCAAGC+AGG | 0.595648 | 4_3:-29684157 | Msa0637580:CDS |
| TTTGGAAGAAATAGGTGCAT+GGG | 0.596236 | 4_3:+29687416 | None:intergenic |
| GCTGGTTTAATCTAGTGAAG+AGG | 0.596678 | 4_3:-29686880 | Msa0637580:CDS |
| GTTTGGAAGAAATAGGTGCA+TGG | 0.599993 | 4_3:+29687415 | None:intergenic |
| AACAATATCAAAAGAAACAG+AGG | 0.603713 | 4_3:-29686656 | Msa0637580:CDS |
| GTAAAGTGAATGGAAGATGG+AGG | 0.607160 | 4_3:-29684655 | Msa0637580:CDS |
| ATAATTCCTTGTATCATGGG+AGG | 0.614389 | 4_3:-29684027 | Msa0637580:three_prime_UTR |
| TCCAATCAAAGATTTGTGCA+AGG | 0.626481 | 4_3:-29685324 | Msa0637580:CDS |
| CAACAAGTTCACCAAAAGCA+AGG | 0.636655 | 4_3:-29684328 | Msa0637580:CDS |
| AAGGCCTTGAGGGCATTGAA+GGG | 0.639367 | 4_3:-29685436 | Msa0637580:CDS |
| AAGGACCCATGAAGGCAAAG+AGG | 0.649590 | 4_3:-29687755 | Msa0637580:five_prime_UTR |
| TCAACCTATCAAAATCCAGA+GGG | 0.651212 | 4_3:-29686536 | Msa0637580:CDS |
| GACAGGCAAAGAAGGCCTTG+AGG | 0.658532 | 4_3:-29685447 | Msa0637580:intron |
| AATATCAAAAGAAACAGAGG+AGG | 0.669914 | 4_3:-29686653 | Msa0637580:CDS |
| ATTGAACACTTCCTCCTGTG+AGG | 0.674211 | 4_3:+29684434 | None:intergenic |
| TTGAGAATTGAACATTAGTG+TGG | 0.682763 | 4_3:-29683934 | Msa0637580:three_prime_UTR |
| TTGAAATTGAGAATCACACA+AGG | 0.722024 | 4_3:+29683816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAAAAAATTGAAA+AGG | - | chr4_3:29683943-29683962 | Msa0637580:three_prime_UTR | 10.0% |
| !!! | ATTCATATTTTTATTAACTT+TGG | + | chr4_3:29684351-29684370 | None:intergenic | 10.0% |
| !! | CTGATTTATGTATATTTATT+TGG | - | chr4_3:29684493-29684512 | Msa0637580:CDS | 15.0% |
| !! | ACAAAATTTGATTCTTAATT+TGG | + | chr4_3:29684539-29684558 | None:intergenic | 15.0% |
| !! | AAATAAATTATTCAATGCTT+AGG | - | chr4_3:29684628-29684647 | Msa0637580:CDS | 15.0% |
| !!! | ATATGATTGTTATTAGAATA+AGG | - | chr4_3:29685532-29685551 | Msa0637580:intron | 15.0% |
| !!! | ATATGATTGTTATTAGAATA+AGG | - | chr4_3:29685532-29685551 | Msa0637580:intron | 15.0% |
| !! | GGTGTTTAAATTAAAAATAT+AGG | - | chr4_3:29685553-29685572 | Msa0637580:intron | 15.0% |
| !!! | AAAAAAAAAGTATCATAACT+AGG | - | chr4_3:29685774-29685793 | Msa0637580:intron | 15.0% |
| !! | CAAAAATATATATAAGAGTT+AGG | + | chr4_3:29686745-29686764 | None:intergenic | 15.0% |
| !! | TTATGAAAAATGAGTATAAT+AGG | + | chr4_3:29687869-29687888 | None:intergenic | 15.0% |
| !! | CAAAAAATCTTGAATGATAT+AGG | - | chr4_3:29684101-29684120 | Msa0637580:CDS | 20.0% |
| !! | ATATGAATAAGTGATTAACT+TGG | - | chr4_3:29684363-29684382 | Msa0637580:CDS | 20.0% |
| !! | TAGTTGAAAAAAAAAAGATG+AGG | + | chr4_3:29684419-29684438 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCAACTATCT+TGG | - | chr4_3:29684422-29684441 | Msa0637580:CDS | 20.0% |
| !!! | AAGAATCAAATTTTGTTACA+AGG | - | chr4_3:29684543-29684562 | Msa0637580:CDS | 20.0% |
| !! | ATTTAGCAATATGATCAAAA+GGG | + | chr4_3:29684800-29684819 | None:intergenic | 20.0% |
| !! | AAATGAACAAAGAAAAATCT+CGG | - | chr4_3:29685845-29685864 | Msa0637580:intron | 20.0% |
| !! | TTAGTAAGTAAAAGAAACAA+TGG | - | chr4_3:29686204-29686223 | Msa0637580:intron | 20.0% |
| !! | TATAACTAAAGCTTATAGTA+AGG | + | chr4_3:29686233-29686252 | None:intergenic | 20.0% |
| !!! | TTCTAAAGACAAGATAATTA+GGG | - | chr4_3:29686472-29686491 | Msa0637580:intron | 20.0% |
| !!! | TGAATTTTCTCATTTTTAGA+TGG | - | chr4_3:29686584-29686603 | Msa0637580:CDS | 20.0% |
| !! | TATTCTTTCTCTCTTAATAA+TGG | + | chr4_3:29686691-29686710 | None:intergenic | 20.0% |
| !! | TTATGACAAAAGATAAAACA+AGG | - | chr4_3:29686863-29686882 | Msa0637580:CDS | 20.0% |
| !! | GAATTTCTTGAAAATAGTAT+TGG | + | chr4_3:29687259-29687278 | None:intergenic | 20.0% |
| !! | TACTGATATGTTAAAATGTT+TGG | - | chr4_3:29687664-29687683 | Msa0637580:five_prime_UTR | 20.0% |
| !!! | ATGTGTTTGAATGTTTATTT+TGG | - | chr4_3:29687760-29687779 | Msa0637580:five_prime_UTR | 20.0% |
| !!! | AGTTGATTTTTACATTGATT+AGG | - | chr4_3:29687818-29687837 | Msa0637580:five_prime_UTR | 20.0% |
| !!! | TTATCTTTGCTATTTCATGA+TGG | - | chr4_3:29683836-29683855 | Msa0637580:three_prime_UTR | 25.0% |
| ! | GTTATATCATAGTTTAGTGA+AGG | - | chr4_3:29683858-29683877 | Msa0637580:three_prime_UTR | 25.0% |
| !!! | TTTGTTTTTCTAAATGTAGC+AGG | + | chr4_3:29683924-29683943 | None:intergenic | 25.0% |
| ! | AGATTCTTTCCTATTTGAAA+GGG | + | chr4_3:29684135-29684154 | None:intergenic | 25.0% |
| ! | AAGATTCTTTCCTATTTGAA+AGG | + | chr4_3:29684136-29684155 | None:intergenic | 25.0% |
| ! | TTACTATAAAGAATGTTTGC+TGG | - | chr4_3:29684228-29684247 | Msa0637580:CDS | 25.0% |
| ! | TTGGTTATAAAAAAGACAAG+AGG | + | chr4_3:29684332-29684351 | None:intergenic | 25.0% |
| !!! | AACATCAGACTTTTCTAAAA+TGG | + | chr4_3:29684585-29684604 | None:intergenic | 25.0% |
| ! | AAGCATACTCATATAGAAAA+TGG | + | chr4_3:29684740-29684759 | None:intergenic | 25.0% |
| ! | TTTCTATATGAGTATGCTTA+TGG | - | chr4_3:29684741-29684760 | Msa0637580:intron | 25.0% |
| ! | CATTTAGCAATATGATCAAA+AGG | + | chr4_3:29684801-29684820 | None:intergenic | 25.0% |
| !! | CTTTTGATCATATTGCTAAA+TGG | - | chr4_3:29684799-29684818 | Msa0637580:intron | 25.0% |
| !! | GAAAACCTTATATTTTCAGA+AGG | - | chr4_3:29684971-29684990 | Msa0637580:intron | 25.0% |
| !! | TTTCTCCTTCTGAAAATATA+AGG | + | chr4_3:29684979-29684998 | None:intergenic | 25.0% |
| ! | AAAAGAAGGAAATGGATATT+TGG | - | chr4_3:29684996-29685015 | Msa0637580:intron | 25.0% |
| !!! | TCTGTTTCTTTTGATATTGT+TGG | + | chr4_3:29685062-29685081 | None:intergenic | 25.0% |
| ! | AACAATATCAAAAGAAACAG+AGG | - | chr4_3:29685061-29685080 | Msa0637580:CDS | 25.0% |
| ! | AATGAACAAAGAAAAATCTC+GGG | - | chr4_3:29685846-29685865 | Msa0637580:intron | 25.0% |
| ! | TAGTATATTTAGAGAACATG+TGG | - | chr4_3:29685897-29685916 | Msa0637580:intron | 25.0% |
| ! | GTAAAGGAAATCTAGTAAAT+TGG | + | chr4_3:29686046-29686065 | None:intergenic | 25.0% |
| ! | ATTGAAAGAGAAAGTTGTAA+AGG | - | chr4_3:29686178-29686197 | Msa0637580:intron | 25.0% |
| !! | TTATAGCATTTTCTTGTTCA+TGG | - | chr4_3:29686248-29686267 | Msa0637580:intron | 25.0% |
| !!! | GTTCTAAAGACAAGATAATT+AGG | - | chr4_3:29686471-29686490 | Msa0637580:intron | 25.0% |
| !!! | TTGTTTTGTACAATTACGTT+GGG | - | chr4_3:29686770-29686789 | Msa0637580:intron | 25.0% |
| ! | GTTTATATGTTTAATGCCAA+TGG | + | chr4_3:29686824-29686843 | None:intergenic | 25.0% |
| !!! | ATTGATAACTTTTTCTTGCA+AGG | + | chr4_3:29687454-29687473 | None:intergenic | 25.0% |
| ! | ATCATAATTCCTTGTATCAT+GGG | - | chr4_3:29687687-29687706 | Msa0637580:five_prime_UTR | 25.0% |
| ! | TTCAATAGAATGTGTTTAGA+TGG | - | chr4_3:29687919-29687938 | Msa0637580:five_prime_UTR | 25.0% |
| ! | TCAATAGAATGTGTTTAGAT+GGG | - | chr4_3:29687920-29687939 | Msa0637580:five_prime_UTR | 25.0% |
| GACATGCACATTTAAATGAA+AGG | - | chr4_3:29683803-29683822 | Msa0637580:three_prime_UTR | 30.0% | |
| AATCAAGAATGTGGAAACTT+TGG | + | chr4_3:29684195-29684214 | None:intergenic | 30.0% | |
| ! | AGTTTCCACATTCTTGATTT+TGG | - | chr4_3:29684196-29684215 | Msa0637580:CDS | 30.0% |
| TGATGAGTAAATGTGTGAAA+CGG | + | chr4_3:29684656-29684675 | None:intergenic | 30.0% | |
| ! | ATTTTCAGAAGGAGAAAAGA+AGG | - | chr4_3:29684982-29685001 | Msa0637580:intron | 30.0% |
| ! | GTTTCTTTTGATATTGTTGG+TGG | + | chr4_3:29685059-29685078 | None:intergenic | 30.0% |
| AATATCAAAAGAAACAGAGG+AGG | - | chr4_3:29685064-29685083 | Msa0637580:CDS | 30.0% | |
| ATCTTCAGAATCAGAATGTT+TGG | + | chr4_3:29685096-29685115 | None:intergenic | 30.0% | |
| AAAATTCTTTAATCTCCCTC+TGG | + | chr4_3:29685199-29685218 | None:intergenic | 30.0% | |
| ! | AAAGGCAGTTTGAATTTTGA+TGG | + | chr4_3:29685225-29685244 | None:intergenic | 30.0% |
| TCAAAATTCAAACTGCCTTT+AGG | - | chr4_3:29685225-29685244 | Msa0637580:intron | 30.0% | |
| CAAAATTCAAACTGCCTTTA+GGG | - | chr4_3:29685226-29685245 | Msa0637580:intron | 30.0% | |
| AAAATTCAAACTGCCTTTAG+GGG | - | chr4_3:29685227-29685246 | Msa0637580:intron | 30.0% | |
| TGTTATAAACCCACTTAGAT+TGG | - | chr4_3:29685348-29685367 | Msa0637580:CDS | 30.0% | |
| TTATTGCTGTGATTTAGTCA+GGG | + | chr4_3:29685642-29685661 | None:intergenic | 30.0% | |
| TTTATTGCTGTGATTTAGTC+AGG | + | chr4_3:29685643-29685662 | None:intergenic | 30.0% | |
| ATAGGATCAGAATCAATTTG+AGG | + | chr4_3:29686081-29686100 | None:intergenic | 30.0% | |
| AACTAAAGCTTATAGTAAGG+TGG | + | chr4_3:29686230-29686249 | None:intergenic | 30.0% | |
| !! | GTTGTTTTGTACAATTACGT+TGG | - | chr4_3:29686769-29686788 | Msa0637580:intron | 30.0% |
| TCAGAAAGAAGTAAAGTGAA+TGG | - | chr4_3:29687052-29687071 | Msa0637580:intron | 30.0% | |
| !! | TACAGCTCACATTCTAAAAT+CGG | - | chr4_3:29687154-29687173 | Msa0637580:intron | 30.0% |
| TAAAACTAGGAGATCTTTGT+TGG | + | chr4_3:29687531-29687550 | None:intergenic | 30.0% | |
| !!! | ACAAAGATCTCCTAGTTTTA+AGG | - | chr4_3:29687531-29687550 | Msa0637580:five_prime_UTR | 30.0% |
| !!! | CAAAGATCTCCTAGTTTTAA+GGG | - | chr4_3:29687532-29687551 | Msa0637580:five_prime_UTR | 30.0% |
| ACTGAAATACCCTTAAAACT+AGG | + | chr4_3:29687544-29687563 | None:intergenic | 30.0% | |
| ! | ATAGTCCTGCTTGATTTTAT+AGG | + | chr4_3:29687568-29687587 | None:intergenic | 30.0% |
| AAAATCAAGCAGGACTATAA+AGG | - | chr4_3:29687570-29687589 | Msa0637580:five_prime_UTR | 30.0% | |
| ! | GTATCATTAGCTTCATTTGA+AGG | + | chr4_3:29687647-29687666 | None:intergenic | 30.0% |
| GATCATAATTCCTTGTATCA+TGG | - | chr4_3:29687686-29687705 | Msa0637580:five_prime_UTR | 30.0% | |
| TTGAGAATTGAACATTAGTG+TGG | - | chr4_3:29687783-29687802 | Msa0637580:five_prime_UTR | 30.0% | |
| TTGAAATTGAGAATCACACA+AGG | + | chr4_3:29687904-29687923 | None:intergenic | 30.0% | |
| AAATTGAAAAGGACCCATGA+AGG | - | chr4_3:29683954-29683973 | Msa0637580:three_prime_UTR | 35.0% | |
| AAATTCCTCTTTGCCTTCAT+GGG | + | chr4_3:29683970-29683989 | None:intergenic | 35.0% | |
| GCTCATGAAGATAAATGCAT+AGG | + | chr4_3:29684011-29684030 | None:intergenic | 35.0% | |
| GAATTTCTGCCCTTTCAAAT+AGG | - | chr4_3:29684123-29684142 | Msa0637580:CDS | 35.0% | |
| AGTCACCAAAATCAAGAATG+TGG | + | chr4_3:29684204-29684223 | None:intergenic | 35.0% | |
| !! | AAGAATGTTTGCTGGTTTCA+AGG | - | chr4_3:29684236-29684255 | Msa0637580:CDS | 35.0% |
| TTTGGAAGAAATAGGTGCAT+GGG | + | chr4_3:29684304-29684323 | None:intergenic | 35.0% | |
| ! | ATGCACCTATTTCTTCCAAA+CGG | - | chr4_3:29684304-29684323 | Msa0637580:CDS | 35.0% |
| !! | TTTTCAACTATCTTGGCTTG+TGG | - | chr4_3:29684429-29684448 | Msa0637580:CDS | 35.0% |
| ! | AAACCAGCTCTTCTTTTTCT+TGG | + | chr4_3:29684825-29684844 | None:intergenic | 35.0% |
| ! | TAGTGAAGAGGCTTTTTGTA+TGG | - | chr4_3:29684849-29684868 | Msa0637580:intron | 35.0% |
| ! | AGTGAAGAGGCTTTTTGTAT+GGG | - | chr4_3:29684850-29684869 | Msa0637580:intron | 35.0% |
| AGAAGGAGAAAAGAAGGAAA+TGG | - | chr4_3:29684988-29685007 | Msa0637580:intron | 35.0% | |
| GAAGGAAATGGATATTTGGA+AGG | - | chr4_3:29685000-29685019 | Msa0637580:intron | 35.0% | |
| TCAACCTATCAAAATCCAGA+GGG | - | chr4_3:29685181-29685200 | Msa0637580:intron | 35.0% | |
| TCGAACATGAAACCTTAAAG+AGG | + | chr4_3:29685409-29685428 | None:intergenic | 35.0% | |
| TATTGCTGTGATTTAGTCAG+GGG | + | chr4_3:29685641-29685660 | None:intergenic | 35.0% | |
| AACTTATTCTCTCTCGTAGT+AGG | + | chr4_3:29685717-29685736 | None:intergenic | 35.0% | |
| AACAAAGAAAAATCTCGGGA+AGG | - | chr4_3:29685850-29685869 | Msa0637580:intron | 35.0% | |
| !! | CAGAAGCTTGTTAAAAAGTC+AGG | - | chr4_3:29686014-29686033 | Msa0637580:intron | 35.0% |
| ! | CAATTTGAGGTACTACTAGA+TGG | + | chr4_3:29686068-29686087 | None:intergenic | 35.0% |
| TGATTCTGATCCTATTGTGT+TGG | - | chr4_3:29686086-29686105 | Msa0637580:intron | 35.0% | |
| AGTACCTCAAATTCAACTCT+AGG | - | chr4_3:29686132-29686151 | Msa0637580:intron | 35.0% | |
| GTACCTCAAATTCAACTCTA+GGG | - | chr4_3:29686133-29686152 | Msa0637580:intron | 35.0% | |
| GGGAAGGTAAAAACAAATAC+AGG | - | chr4_3:29686153-29686172 | Msa0637580:intron | 35.0% | |
| AAACTTCAAGCTATCATTCG+TGG | - | chr4_3:29686311-29686330 | Msa0637580:intron | 35.0% | |
| ! | TCTTCAGAGTATTCATAGCT+TGG | + | chr4_3:29686352-29686371 | None:intergenic | 35.0% |
| TCCAATCAAAGATTTGTGCA+AGG | - | chr4_3:29686393-29686412 | Msa0637580:intron | 35.0% | |
| TCCTTGCACAAATCTTTGAT+TGG | + | chr4_3:29686397-29686416 | None:intergenic | 35.0% | |
| TCCAAATGGTTGAAGGAAAA+TGG | - | chr4_3:29686420-29686439 | Msa0637580:intron | 35.0% | |
| CCAAATGGTTGAAGGAAAAT+GGG | - | chr4_3:29686421-29686440 | Msa0637580:intron | 35.0% | |
| ACTCAAACAGTCAAAGAAAG+TGG | - | chr4_3:29686607-29686626 | Msa0637580:CDS | 35.0% | |
| CTCAAACAGTCAAAGAAAGT+GGG | - | chr4_3:29686608-29686627 | Msa0637580:CDS | 35.0% | |
| GGATGACAGTACATTATTGA+AGG | - | chr4_3:29686629-29686648 | Msa0637580:CDS | 35.0% | |
| CAGTACATTATTGAAGGAAG+AGG | - | chr4_3:29686635-29686654 | Msa0637580:CDS | 35.0% | |
| TTATGTGTTTATAGCGCCAT+TGG | - | chr4_3:29686805-29686824 | Msa0637580:intron | 35.0% | |
| GGATAGCTTATGAAAACAAC+AGG | + | chr4_3:29686912-29686931 | None:intergenic | 35.0% | |
| !! | GTTGTTTTCATAAGCTATCC+TGG | - | chr4_3:29686912-29686931 | Msa0637580:exon | 35.0% |
| AACTTATAGAAACCCTACAG+AGG | - | chr4_3:29687020-29687039 | Msa0637580:intron | 35.0% | |
| GAAGTAAAGTGAATGGAAGA+TGG | - | chr4_3:29687059-29687078 | Msa0637580:intron | 35.0% | |
| ! | TCTAAAATCGGTGACGAATT+TGG | - | chr4_3:29687166-29687185 | Msa0637580:intron | 35.0% |
| CAAAATCCAAATCCAGTTGA+AGG | - | chr4_3:29687223-29687242 | Msa0637580:intron | 35.0% | |
| ! | CAAGAAATTCTTTTCCTCAC+AGG | - | chr4_3:29687269-29687288 | Msa0637580:intron | 35.0% |
| AACAGTGAAGTCCTTAATAG+AGG | - | chr4_3:29687487-29687506 | Msa0637580:five_prime_UTR | 35.0% | |
| GAACTTTGTCTATCCCAATT+AGG | + | chr4_3:29687625-29687644 | None:intergenic | 35.0% | |
| ATAATTCCTTGTATCATGGG+AGG | - | chr4_3:29687690-29687709 | Msa0637580:five_prime_UTR | 35.0% | |
| TAATTCCTTGTATCATGGGA+GGG | - | chr4_3:29687691-29687710 | Msa0637580:five_prime_UTR | 35.0% | |
| GAAATTCCTCTTTGCCTTCA+TGG | + | chr4_3:29683971-29683990 | None:intergenic | 40.0% | |
| CAAGAATGTGGAAACTTTGG+TGG | + | chr4_3:29684192-29684211 | None:intergenic | 40.0% | |
| ! | CTGCAGTCATTAACTTGAGA+TGG | + | chr4_3:29684270-29684289 | None:intergenic | 40.0% |
| AATAGGTGCATGGGAACAAA+GGG | + | chr4_3:29684295-29684314 | None:intergenic | 40.0% | |
| AAATAGGTGCATGGGAACAA+AGG | + | chr4_3:29684296-29684315 | None:intergenic | 40.0% | |
| GTTTGGAAGAAATAGGTGCA+TGG | + | chr4_3:29684305-29684324 | None:intergenic | 40.0% | |
| ! | GCTGGTTTAATCTAGTGAAG+AGG | - | chr4_3:29684837-29684856 | Msa0637580:intron | 40.0% |
| CTCACATTCTACACAAGAGA+AGG | - | chr4_3:29684874-29684893 | Msa0637580:intron | 40.0% | |
| CTCAACCTATCAAAATCCAG+AGG | - | chr4_3:29685180-29685199 | Msa0637580:intron | 40.0% | |
| !! | ATCTCCCTCTGGATTTTGAT+AGG | + | chr4_3:29685188-29685207 | None:intergenic | 40.0% |
| ACAGCTTGAAGAAACTCACA+AGG | + | chr4_3:29685256-29685275 | None:intergenic | 40.0% | |
| CTATAGCCTAAATCCTCCTT+TGG | - | chr4_3:29685279-29685298 | Msa0637580:CDS | 40.0% | |
| ATCATGCCAAAGGAGGATTT+AGG | + | chr4_3:29685288-29685307 | None:intergenic | 40.0% | |
| ACTAAAGATCATGCCAAAGG+AGG | + | chr4_3:29685295-29685314 | None:intergenic | 40.0% | |
| AGCACTAAAGATCATGCCAA+AGG | + | chr4_3:29685298-29685317 | None:intergenic | 40.0% | |
| ATTCCCTCCAGTGTCAATTT+GGG | - | chr4_3:29685428-29685447 | Msa0637580:CDS | 40.0% | |
| AGTCTGATAGTTATGGACGA+AGG | - | chr4_3:29685873-29685892 | Msa0637580:intron | 40.0% | |
| TAGAGAACATGTGGCTGATA+CGG | - | chr4_3:29685906-29685925 | Msa0637580:intron | 40.0% | |
| ATACGGCCTCAATTGTATTG+AGG | - | chr4_3:29685923-29685942 | Msa0637580:intron | 40.0% | |
| CTACGTCCTCAATACAATTG+AGG | + | chr4_3:29685932-29685951 | None:intergenic | 40.0% | |
| CAAGCTTCTGCTTCGAAAAA+AGG | + | chr4_3:29686004-29686023 | None:intergenic | 40.0% | |
| ! | GAGGTACTACTAGATGGTAA+AGG | + | chr4_3:29686062-29686081 | None:intergenic | 40.0% |
| !! | GATCCTATTGTGTTGGTCTT+CGG | - | chr4_3:29686093-29686112 | Msa0637580:intron | 40.0% |
| TTTCCGAAGACCAACACAAT+AGG | + | chr4_3:29686099-29686118 | None:intergenic | 40.0% | |
| CTTCCCTAGAGTTGAATTTG+AGG | + | chr4_3:29686139-29686158 | None:intergenic | 40.0% | |
| ! | CTCAAATTCAACTCTAGGGA+AGG | - | chr4_3:29686137-29686156 | Msa0637580:intron | 40.0% |
| ! | GCATTTTCTTGTTCATGGAC+AGG | - | chr4_3:29686253-29686272 | Msa0637580:intron | 40.0% |
| ! | CCCATTTTCCTTCAACCATT+TGG | + | chr4_3:29686424-29686443 | None:intergenic | 40.0% |
| CTGTTTGGGGGAAAATACTT+CGG | + | chr4_3:29686940-29686959 | None:intergenic | 40.0% | |
| AAGCATTTGAGCGACTGTTT+GGG | + | chr4_3:29686954-29686973 | None:intergenic | 40.0% | |
| TAAGCATTTGAGCGACTGTT+TGG | + | chr4_3:29686955-29686974 | None:intergenic | 40.0% | |
| GTAAAGTGAATGGAAGATGG+AGG | - | chr4_3:29687062-29687081 | Msa0637580:intron | 40.0% | |
| AAAATCGGTGACGAATTTGG+AGG | - | chr4_3:29687169-29687188 | Msa0637580:intron | 40.0% | |
| TCCAAATCCAGTTGAAGGAT+TGG | - | chr4_3:29687228-29687247 | Msa0637580:intron | 40.0% | |
| TCCAATCCTTCAACTGGATT+TGG | + | chr4_3:29687232-29687251 | None:intergenic | 40.0% | |
| ! | GAAATTCTTTTCCTCACAGG+AGG | - | chr4_3:29687272-29687291 | Msa0637580:intron | 40.0% |
| CAACAAGTTCACCAAAAGCA+AGG | - | chr4_3:29687389-29687408 | Msa0637580:five_prime_UTR | 40.0% | |
| ! | TAGTTCCAAGACCTTGCTTT+TGG | + | chr4_3:29687403-29687422 | None:intergenic | 40.0% |
| CACTAAGCTTGCCTCTATTA+AGG | + | chr4_3:29687501-29687520 | None:intergenic | 40.0% | |
| CTTAATAGAGGCAAGCTTAG+TGG | - | chr4_3:29687499-29687518 | Msa0637580:five_prime_UTR | 40.0% | |
| CAGTGCCTATAAAATCAAGC+AGG | - | chr4_3:29687560-29687579 | Msa0637580:five_prime_UTR | 40.0% | |
| AGATAGCTCACTGCCTAATT+GGG | - | chr4_3:29687609-29687628 | Msa0637580:five_prime_UTR | 40.0% | |
| GGCATGTTCATGTGTCTGTT+GGG | + | chr4_3:29683903-29683922 | None:intergenic | 45.0% | |
| AGGCATGTTCATGTGTCTGT+TGG | + | chr4_3:29683904-29683923 | None:intergenic | 45.0% | |
| ! | AGGCACCGTTTGGAAGAAAT+AGG | + | chr4_3:29684312-29684331 | None:intergenic | 45.0% |
| !! | AAAAGACAAGAGGCACCGTT+TGG | + | chr4_3:29684322-29684341 | None:intergenic | 45.0% |
| TGGCCAAGAAAAAGAAGAGC+TGG | - | chr4_3:29684819-29684838 | Msa0637580:intron | 45.0% | |
| ! | GTTGGTGGAGCTGTAATTGA+AGG | + | chr4_3:29685044-29685063 | None:intergenic | 45.0% |
| ACTCACAAGGTAACCCCTAA+AGG | + | chr4_3:29685243-29685262 | None:intergenic | 45.0% | |
| ! | TAAACCCACTTAGATTGGCC+TGG | - | chr4_3:29685353-29685372 | Msa0637580:CDS | 45.0% |
| !! | TTAGATTGGCCTGGTGGTAT+TGG | - | chr4_3:29685362-29685381 | Msa0637580:CDS | 45.0% |
| GATTCCCTCCAGTGTCAATT+TGG | - | chr4_3:29685427-29685446 | Msa0637580:CDS | 45.0% | |
| TAACCCACCCAAATTGACAC+TGG | + | chr4_3:29685438-29685457 | None:intergenic | 45.0% | |
| GGGAAGGAGTCTGATAGTTA+TGG | - | chr4_3:29685866-29685885 | Msa0637580:intron | 45.0% | |
| TTTAGGCGACGGCATCAAAA+AGG | + | chr4_3:29685967-29685986 | None:intergenic | 45.0% | |
| AGGTTCTGCCACCAAGATTT+AGG | + | chr4_3:29685984-29686003 | None:intergenic | 45.0% | |
| TGTTCATGGACAGGCAAAGA+AGG | - | chr4_3:29686262-29686281 | Msa0637580:intron | 45.0% | |
| TATTCCCTTCAATGCCCTCA+AGG | + | chr4_3:29686288-29686307 | None:intergenic | 45.0% | |
| TTGTGCAAGGAGACTCCAAA+TGG | - | chr4_3:29686406-29686425 | Msa0637580:intron | 45.0% | |
| AGGAGACTCCAAATGGTTGA+AGG | - | chr4_3:29686413-29686432 | Msa0637580:intron | 45.0% | |
| AGCATTTGAGCGACTGTTTG+GGG | + | chr4_3:29686953-29686972 | None:intergenic | 45.0% | |
| ! | TGAATGGAAGATGGAGGTAC+TGG | - | chr4_3:29687068-29687087 | Msa0637580:intron | 45.0% |
| GGTGATTCCAATCCTTCAAC+TGG | + | chr4_3:29687238-29687257 | None:intergenic | 45.0% | |
| ATTGAACACTTCCTCCTGTG+AGG | + | chr4_3:29687286-29687305 | None:intergenic | 45.0% | |
| !! | CACAGGAGGAAGTGTTCAAT+AGG | - | chr4_3:29687286-29687305 | Msa0637580:intron | 45.0% |
| CCAATCATTGTCAAGCTCTC+CGG | - | chr4_3:29687315-29687334 | Msa0637580:intron | 45.0% | |
| GTTCACCAAAAGCAAGGTCT+TGG | - | chr4_3:29687395-29687414 | Msa0637580:five_prime_UTR | 45.0% | |
| CAGATAGCTCACTGCCTAAT+TGG | - | chr4_3:29687608-29687627 | Msa0637580:five_prime_UTR | 45.0% | |
| AAGGACCCATGAAGGCAAAG+AGG | - | chr4_3:29683962-29683981 | Msa0637580:three_prime_UTR | 50.0% | |
| ACCACCAGGCCAATCTAAGT+GGG | + | chr4_3:29685360-29685379 | None:intergenic | 50.0% | |
| TACCACCAGGCCAATCTAAG+TGG | + | chr4_3:29685361-29685380 | None:intergenic | 50.0% | |
| !! | GTGGTATTGGCTTGAGACCT+GGG | - | chr4_3:29685375-29685394 | Msa0637580:CDS | 50.0% |
| ! | TTAAAGAGGAGCACACTCCC+AGG | + | chr4_3:29685395-29685414 | None:intergenic | 50.0% |
| ! | TGGGAGTGTGCTCCTCTTTA+AGG | - | chr4_3:29685394-29685413 | Msa0637580:CDS | 50.0% |
| CCACCCAAATTGACACTGGA+GGG | + | chr4_3:29685434-29685453 | None:intergenic | 50.0% | |
| CCTCCAGTGTCAATTTGGGT+GGG | - | chr4_3:29685432-29685451 | Msa0637580:CDS | 50.0% | |
| TGATGCCGTCGCCTAAATCT+TGG | - | chr4_3:29685970-29685989 | Msa0637580:intron | 50.0% | |
| TGCCACCAAGATTTAGGCGA+CGG | + | chr4_3:29685978-29685997 | None:intergenic | 50.0% | |
| ACAGGCAAAGAAGGCCTTGA+GGG | - | chr4_3:29686271-29686290 | Msa0637580:intron | 50.0% | |
| !! | AAGGCCTTGAGGGCATTGAA+GGG | - | chr4_3:29686281-29686300 | Msa0637580:intron | 50.0% |
| GCATTTGAGCGACTGTTTGG+GGG | + | chr4_3:29686952-29686971 | None:intergenic | 50.0% | |
| TGACTCTGCTGACCTCTGTA+GGG | + | chr4_3:29687035-29687054 | None:intergenic | 50.0% | |
| CCGGAGAGCTTGACAATGAT+TGG | + | chr4_3:29687318-29687337 | None:intergenic | 50.0% | |
| TCAGTAGCAGCCATGTATGC+CGG | + | chr4_3:29687346-29687365 | None:intergenic | 50.0% | |
| TCAAGCCCTCCCATGATACA+AGG | + | chr4_3:29687699-29687718 | None:intergenic | 50.0% | |
| !! | ACCCACTTAGATTGGCCTGG+TGG | - | chr4_3:29685356-29685375 | Msa0637580:CDS | 55.0% |
| GGTCTCAAGCCAATACCACC+AGG | + | chr4_3:29685374-29685393 | None:intergenic | 55.0% | |
| !! | GGTGGTATTGGCTTGAGACC+TGG | - | chr4_3:29685374-29685393 | Msa0637580:CDS | 55.0% |
| CCCTCCAGTGTCAATTTGGG+TGG | - | chr4_3:29685431-29685450 | Msa0637580:CDS | 55.0% | |
| CCCACCCAAATTGACACTGG+AGG | + | chr4_3:29685435-29685454 | None:intergenic | 55.0% | |
| TGCCGTCGCCTAAATCTTGG+TGG | - | chr4_3:29685973-29685992 | Msa0637580:intron | 55.0% | |
| GACAGGCAAAGAAGGCCTTG+AGG | - | chr4_3:29686270-29686289 | Msa0637580:intron | 55.0% | |
| !! | GAAGGCCTTGAGGGCATTGA+AGG | - | chr4_3:29686280-29686299 | Msa0637580:intron | 55.0% |
| !! | GGGGAAAATACTTCGGTGCC+AGG | + | chr4_3:29686933-29686952 | None:intergenic | 55.0% |
| CTGACTCTGCTGACCTCTGT+AGG | + | chr4_3:29687036-29687055 | None:intergenic | 55.0% | |
| !! | TGGAAGATGGAGGTACTGGC+TGG | - | chr4_3:29687072-29687091 | Msa0637580:intron | 55.0% |
| !! | GAGGTACTGGCTGGAGCAAT+GGG | - | chr4_3:29687081-29687100 | Msa0637580:intron | 55.0% |
| !! | GGAGGTACTGGCTGGAGCAA+TGG | - | chr4_3:29687080-29687099 | Msa0637580:intron | 60.0% |
| GTCAAGCTCTCCGGCAACTC+CGG | - | chr4_3:29687324-29687343 | Msa0637580:intron | 60.0% | |
| TCCGGCAACTCCGGCATACA+TGG | - | chr4_3:29687333-29687352 | Msa0637580:intron | 60.0% | |
| GCCATGTATGCCGGAGTTGC+CGG | + | chr4_3:29687337-29687356 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 29683796 | 29687943 | 29683796 | ID=Msa0637580;Name=Msa0637580 |
| chr4_3 | mRNA | 29683796 | 29687943 | 29683796 | ID=Msa0637580-mRNA-1;Parent=Msa0637580;Name=Msa0637580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=614|1|1|1|0.8|0.66|6|289|436 |
| chr4_3 | exon | 29683796 | 29684699 | 29683796 | ID=Msa0637580-mRNA-1:exon:7210;Parent=Msa0637580-mRNA-1 |
| chr4_3 | exon | 29685005 | 29685136 | 29685005 | ID=Msa0637580-mRNA-1:exon:7209;Parent=Msa0637580-mRNA-1 |
| chr4_3 | exon | 29685246 | 29685464 | 29685246 | ID=Msa0637580-mRNA-1:exon:7208;Parent=Msa0637580-mRNA-1 |
| chr4_3 | exon | 29686483 | 29686749 | 29686483 | ID=Msa0637580-mRNA-1:exon:7207;Parent=Msa0637580-mRNA-1 |
| chr4_3 | exon | 29686844 | 29686962 | 29686844 | ID=Msa0637580-mRNA-1:exon:7206;Parent=Msa0637580-mRNA-1 |
| chr4_3 | exon | 29687371 | 29687943 | 29687371 | ID=Msa0637580-mRNA-1:exon:7205;Parent=Msa0637580-mRNA-1 |
| chr4_3 | five_prime_UTR | 29687371 | 29687943 | 29687371 | ID=Msa0637580-mRNA-1:five_prime_utr;Parent=Msa0637580-mRNA-1 |
| chr4_3 | five_prime_UTR | 29686922 | 29686962 | 29686922 | ID=Msa0637580-mRNA-1:five_prime_utr;Parent=Msa0637580-mRNA-1 |
| chr4_3 | CDS | 29686844 | 29686921 | 29686844 | ID=Msa0637580-mRNA-1:cds;Parent=Msa0637580-mRNA-1 |
| chr4_3 | CDS | 29686483 | 29686749 | 29686483 | ID=Msa0637580-mRNA-1:cds;Parent=Msa0637580-mRNA-1 |
| chr4_3 | CDS | 29685246 | 29685464 | 29685246 | ID=Msa0637580-mRNA-1:cds;Parent=Msa0637580-mRNA-1 |
| chr4_3 | CDS | 29685005 | 29685136 | 29685005 | ID=Msa0637580-mRNA-1:cds;Parent=Msa0637580-mRNA-1 |
| chr4_3 | CDS | 29684085 | 29684699 | 29684085 | ID=Msa0637580-mRNA-1:cds;Parent=Msa0637580-mRNA-1 |
| chr4_3 | three_prime_UTR | 29683796 | 29684084 | 29683796 | ID=Msa0637580-mRNA-1:three_prime_utr;Parent=Msa0637580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
