Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361440 | XP_013458562.1 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 1.33e-127 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361440 | sp|P26360|ATPG3_IPOBA | 78.191 | 188 | 38 | 3 | 1 | 187 | 1 | 186 | 2.25e-99 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361440 | A0A072UU27 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 6.35e-128 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa1361440 | 0.806911 | 6.535721e-50 | -8.615850e-47 |
| Msa0047640 | Msa1361440 | 0.806030 | 1.002679e-49 | -8.615850e-47 |
| Msa0054530 | Msa1361440 | 0.808554 | 2.925465e-50 | -8.615850e-47 |
| Msa0089980 | Msa1361440 | 0.821787 | 3.353468e-53 | -8.615850e-47 |
| Msa0090010 | Msa1361440 | 0.819114 | 1.376319e-52 | -8.615850e-47 |
| Msa1361440 | Msa1393820 | 0.823854 | 1.107108e-53 | -8.615850e-47 |
| Msa1361440 | Msa1411500 | 0.815871 | 7.402613e-52 | -8.615850e-47 |
| Msa1361440 | Msa1443310 | 0.803615 | 3.202893e-49 | -8.615850e-47 |
| Msa0626270 | Msa1361440 | 0.846102 | 2.681723e-59 | -8.615850e-47 |
| Msa0626460 | Msa1361440 | 0.834569 | 2.778399e-56 | -8.615850e-47 |
| Msa0664540 | Msa1361440 | 0.839646 | 1.399122e-57 | -8.615850e-47 |
| Msa0691340 | Msa1361440 | 0.811859 | 5.671565e-51 | -8.615850e-47 |
| Msa0698100 | Msa1361440 | 0.800681 | 1.285932e-48 | -8.615850e-47 |
| Msa0712260 | Msa1361440 | 0.838152 | 3.407131e-57 | -8.615850e-47 |
| Msa0790410 | Msa1361440 | 0.806197 | 9.244965e-50 | -8.615850e-47 |
| Msa0137540 | Msa1361440 | 0.811706 | 6.121663e-51 | -8.615850e-47 |
| Msa0225480 | Msa1361440 | 0.808063 | 3.723673e-50 | -8.615850e-47 |
| Msa1267040 | Msa1361440 | 0.833578 | 4.921141e-56 | -8.615850e-47 |
| Msa1267170 | Msa1361440 | 0.827224 | 1.760624e-54 | -8.615850e-47 |
| Msa1095790 | Msa1361440 | 0.834181 | 3.476589e-56 | -8.615850e-47 |
| Msa0268110 | Msa1361440 | 0.807746 | 4.347194e-50 | -8.615850e-47 |
| Msa0304100 | Msa1361440 | 0.809522 | 1.814983e-50 | -8.615850e-47 |
| Msa0358400 | Msa1361440 | 0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa0363400 | Msa1361440 | 0.807317 | 5.362360e-50 | -8.615850e-47 |
| Msa1119990 | Msa1361440 | 0.817001 | 4.134732e-52 | -8.615850e-47 |
| Msa1201640 | Msa1361440 | 0.813313 | 2.726375e-51 | -8.615850e-47 |
| Msa0511150 | Msa1361440 | 0.812899 | 3.361118e-51 | -8.615850e-47 |
| Msa0572750 | Msa1361440 | 0.807399 | 5.152282e-50 | -8.615850e-47 |
| Msa0586450 | Msa1361440 | 0.828860 | 7.108439e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361440 | MtrunA17_Chr4g0073341 | 98.930 | 187 | 2 | 0 | 1 | 187 | 1 | 187 | 1.22e-131 | 372 |
| Msa1361440 | MtrunA17_Chr2g0288451 | 36.170 | 141 | 63 | 5 | 17 | 130 | 9 | 149 | 6.77e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361440 | AT2G33040.1 | 71.658 | 187 | 49 | 3 | 1 | 187 | 1 | 183 | 3.55e-90 | 267 |
| Msa1361440 | AT4G04640.1 | 31.677 | 161 | 83 | 3 | 15 | 161 | 32 | 179 | 1.05e-13 | 68.6 |
Find 47 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTCTATTTCCACTCAAAT+TGG | 0.218648 | tig0017497:+23416 | Msa1361440:CDS |
| ACATACTTTGTCTCTTTATC+AGG | 0.264351 | tig0017497:-24534 | Msa1361440:intergenic |
| GCCTTGAGCAAGTTGAATTC+TGG | 0.280287 | tig0017497:+24225 | Msa1361440:CDS |
| TGCAGAGATCAATCTTCTAT+TGG | 0.301364 | tig0017497:+23386 | Msa1361440:intron |
| TGGTTTGTGGCAGCCATTTA+CGG | 0.342195 | tig0017497:+23683 | Msa1361440:CDS |
| AGAGACAAAGTATGTCATAT+TGG | 0.347992 | tig0017497:+24542 | Msa1361440:CDS |
| AGTGGTGTTGATTGGTGGTT+GGG | 0.356057 | tig0017497:-23258 | Msa1361440:intergenic |
| GAGACAAAGTATGTCATATT+GGG | 0.404543 | tig0017497:+24543 | Msa1361440:CDS |
| TCACCGAGAAGAGCCGTAAA+TGG | 0.407251 | tig0017497:-23696 | Msa1361440:intergenic |
| CAGCCATTTACGGCTCTTCT+CGG | 0.412957 | tig0017497:+23693 | Msa1361440:CDS |
| CTGAAAATTCACGTGGTTTG+TGG | 0.419923 | tig0017497:+23670 | Msa1361440:CDS |
| TTGTTTGTGCAGTGAGAAAT+CGG | 0.465696 | tig0017497:+23562 | Msa1361440:intron |
| TCTTCAGACAAAGGTCTTTG+TGG | 0.469713 | tig0017497:+24168 | Msa1361440:CDS |
| GATCGGAGAGTGGTGTTGAT+TGG | 0.474940 | tig0017497:-23266 | Msa1361440:intergenic |
| GAGTGGTGTTGATTGGTGGT+TGG | 0.475949 | tig0017497:-23259 | Msa1361440:intergenic |
| AAGACCTTTGTCTGAAGAAA+CGG | 0.482952 | tig0017497:-24163 | Msa1361440:intergenic |
| CCACGTCTGTCAAGATAAGC+AGG | 0.495862 | tig0017497:+24202 | Msa1361440:CDS |
| AGAGATCAATCTTCTATTGG+AGG | 0.496751 | tig0017497:+23389 | Msa1361440:intron |
| TGCTTAACTCTTCAATGAGA+AGG | 0.497288 | tig0017497:-23056 | Msa1361440:intergenic |
| CGGAGAGTGGTGTTGATTGG+TGG | 0.512550 | tig0017497:-23263 | Msa1361440:intergenic |
| AACTACGTGCTGTTCAAACC+AGG | 0.516036 | tig0017497:+23646 | Msa1361440:CDS |
| GATGAGAGGAGATCGGAGAG+TGG | 0.516462 | tig0017497:-23276 | Msa1361440:intergenic |
| GAATATTCAGAAAATTACTA+AGG | 0.532506 | tig0017497:+23599 | Msa1361440:CDS |
| GCTGCTGCACTCCGACGCGA+AGG | 0.542082 | tig0017497:+23209 | Msa1361440:CDS |
| AATTACTAAGGCTATGAAGA+TGG | 0.542804 | tig0017497:+23611 | Msa1361440:CDS |
| TGTTGCTAGTAGTGAAATGA+AGG | 0.545444 | tig0017497:-23093 | Msa1361440:intergenic |
| AATGAAAGTACCAATTTGAG+TGG | 0.558490 | tig0017497:-23426 | Msa1361440:intergenic |
| TCAGACAAAGGTCTTTGTGG+TGG | 0.558554 | tig0017497:+24171 | Msa1361440:CDS |
| GTATGTCATATTGGGAGAGA+AGG | 0.558989 | tig0017497:+24551 | Msa1361440:CDS |
| GCTTAACTCTTCAATGAGAA+GGG | 0.565107 | tig0017497:-23055 | Msa1361440:intergenic |
| CTGCTGCACTCCGACGCGAA+GGG | 0.583053 | tig0017497:+23210 | Msa1361440:CDS |
| AGGGAGAGATGAGAGGAGAT+CGG | 0.599654 | tig0017497:-23283 | Msa1361440:intergenic |
| ACGAAAGAATCTCAAATCGA+TGG | 0.600840 | tig0017497:+23181 | Msa1361440:exon |
| GAATCTCAAATCGATGGCGA+TGG | 0.602234 | tig0017497:+23187 | Msa1361440:exon |
| GAATCCTCTGAATTATACTC+AGG | 0.606536 | tig0017497:+24638 | Msa1361440:CDS |
| ATTACCGTTTCTTCAGACAA+AGG | 0.610426 | tig0017497:+24159 | Msa1361440:CDS |
| ACGAACAAGGGAGAGATGAG+AGG | 0.612203 | tig0017497:-23290 | Msa1361440:intergenic |
| CTAACCTGAGTATAATTCAG+AGG | 0.633689 | tig0017497:-24642 | Msa1361440:intergenic |
| TCGCTGAGAGAGAGAAAGAG+AGG | 0.639910 | tig0017497:-23155 | Msa1361440:intergenic |
| CATATTGGGAGAGAAGGCTA+AGG | 0.655816 | tig0017497:+24557 | Msa1361440:CDS |
| CCTGCTTATCTTGACAGACG+TGG | 0.656536 | tig0017497:-24202 | Msa1361440:intergenic |
| ACCAGAATTCAACTTGCTCA+AGG | 0.662579 | tig0017497:-24226 | Msa1361440:intergenic |
| CACGTCTGTCAAGATAAGCA+GGG | 0.673248 | tig0017497:+24203 | Msa1361440:CDS |
| CTAAACGCTTCCCTTCGCGT+CGG | 0.678943 | tig0017497:-23220 | Msa1361440:intergenic |
| ACCAGGGCTGAAAATTCACG+TGG | 0.682606 | tig0017497:+23663 | Msa1361440:CDS |
| GGTGGTTGGGAAGACATGAG+AGG | 0.683704 | tig0017497:-23245 | Msa1361440:intergenic |
| ACTACGTGCTGTTCAAACCA+GGG | 0.699734 | tig0017497:+23647 | Msa1361440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAGAATAATAATTA+GGG | - | tig0017497:23464-23483 | Msa1361440:intergenic | 10.0% |
| !! | AAATGAAAAGAATAATAATT+AGG | - | tig0017497:23465-23484 | Msa1361440:intergenic | 10.0% |
| !! | AATGAAAAGAATAATAATTA+GGG | - | tig0017497:23464-23483 | Msa1361440:intergenic | 10.0% |
| !! | AAATGAAAAGAATAATAATT+AGG | - | tig0017497:23465-23484 | Msa1361440:intergenic | 10.0% |
| !! | CAAATTGTAACAAAATAAAA+AGG | - | tig0017497:23752-23771 | Msa1361440:intergenic | 15.0% |
| !! | CAAATTGTAACAAAATAAAA+AGG | - | tig0017497:23752-23771 | Msa1361440:intergenic | 15.0% |
| !! | TGTTAGATTTATGATGAATT+AGG | + | tig0017497:23497-23516 | Msa1361440:intron | 20.0% |
| !!! | AATAAATTTTGACTGTGTTA+TGG | + | tig0017497:23529-23548 | Msa1361440:intron | 20.0% |
| !! | GAATATTCAGAAAATTACTA+AGG | + | tig0017497:23599-23618 | Msa1361440:CDS | 20.0% |
| !! | CGTTATCTTATAAACAATTT+AGG | - | tig0017497:24431-24450 | Msa1361440:intergenic | 20.0% |
| !! | TGTTAGATTTATGATGAATT+AGG | + | tig0017497:23497-23516 | Msa1361440:intron | 20.0% |
| !!! | AATAAATTTTGACTGTGTTA+TGG | + | tig0017497:23529-23548 | Msa1361440:intron | 20.0% |
| !! | GAATATTCAGAAAATTACTA+AGG | + | tig0017497:23599-23618 | Msa1361440:CDS | 20.0% |
| !! | CGTTATCTTATAAACAATTT+AGG | - | tig0017497:24431-24450 | Msa1361440:intergenic | 20.0% |
| ! | AGAACTGTATTAAAAAGCTA+GGG | + | tig0017497:23130-23149 | Msa1361440:five_prime_UTR | 25.0% |
| ! | GAAAAGGATTAAAGAGAAAA+TGG | - | tig0017497:23340-23359 | Msa1361440:intergenic | 25.0% |
| ! | TTGTATGATTGTGCAATAAT+TGG | + | tig0017497:23796-23815 | Msa1361440:intron | 25.0% |
| ! | TCCTATTCATCAAAAATCAA+GGG | - | tig0017497:24022-24041 | Msa1361440:intergenic | 25.0% |
| ! | TTCCTATTCATCAAAAATCA+AGG | - | tig0017497:24023-24042 | Msa1361440:intergenic | 25.0% |
| !!! | ATATTTTGAGATTCTGGTAA+TGG | + | tig0017497:24479-24498 | Msa1361440:intron | 25.0% |
| ! | TTATACTCAGGTTAGTATAT+TGG | + | tig0017497:24650-24669 | Msa1361440:CDS | 25.0% |
| ! | AGAACTGTATTAAAAAGCTA+GGG | + | tig0017497:23130-23149 | Msa1361440:five_prime_UTR | 25.0% |
| ! | GAAAAGGATTAAAGAGAAAA+TGG | - | tig0017497:23340-23359 | Msa1361440:intergenic | 25.0% |
| ! | TTGTATGATTGTGCAATAAT+TGG | + | tig0017497:23796-23815 | Msa1361440:intron | 25.0% |
| ! | TCCTATTCATCAAAAATCAA+GGG | - | tig0017497:24022-24041 | Msa1361440:intergenic | 25.0% |
| ! | TTCCTATTCATCAAAAATCA+AGG | - | tig0017497:24023-24042 | Msa1361440:intergenic | 25.0% |
| !!! | ATATTTTGAGATTCTGGTAA+TGG | + | tig0017497:24479-24498 | Msa1361440:intron | 25.0% |
| CAGAACTGTATTAAAAAGCT+AGG | + | tig0017497:23129-23148 | Msa1361440:five_prime_UTR | 30.0% | |
| AATGAAGAGGCTAATTGAAA+AGG | - | tig0017497:23356-23375 | Msa1361440:intergenic | 30.0% | |
| GCAATAGAAATGAAATGAAG+AGG | - | tig0017497:23369-23388 | Msa1361440:intergenic | 30.0% | |
| !! | AATGAAAGTACCAATTTGAG+TGG | - | tig0017497:23429-23448 | Msa1361440:intergenic | 30.0% |
| AATTACTAAGGCTATGAAGA+TGG | + | tig0017497:23611-23630 | Msa1361440:CDS | 30.0% | |
| ! | ACCCTTGATTTTTGATGAAT+AGG | + | tig0017497:24018-24037 | Msa1361440:intron | 30.0% |
| ! | GGTTCCTTTTATATTCTTTC+AGG | + | tig0017497:24111-24130 | Msa1361440:intron | 30.0% |
| AACGCCTGAAAGAATATAAA+AGG | - | tig0017497:24118-24137 | Msa1361440:intergenic | 30.0% | |
| AAATACAAGTGATGCAATTG+TGG | - | tig0017497:24315-24334 | Msa1361440:intergenic | 30.0% | |
| TTGAAATTGCAGACAATTGT+GGG | - | tig0017497:24339-24358 | Msa1361440:intergenic | 30.0% | |
| !!! | AAAGGTTCTAAATTTTGTCG+GGG | - | tig0017497:24382-24401 | Msa1361440:intergenic | 30.0% |
| !!! | CAAAGGTTCTAAATTTTGTC+GGG | - | tig0017497:24383-24402 | Msa1361440:intergenic | 30.0% |
| !!! | GCAAAGGTTCTAAATTTTGT+CGG | - | tig0017497:24384-24403 | Msa1361440:intergenic | 30.0% |
| AACAGTATTTCACATTGCAA+AGG | - | tig0017497:24400-24419 | Msa1361440:intergenic | 30.0% | |
| !!! | GCTGAAATATTTTGAGATTC+TGG | + | tig0017497:24473-24492 | Msa1361440:intron | 30.0% |
| ACATACTTTGTCTCTTTATC+AGG | - | tig0017497:24537-24556 | Msa1361440:intergenic | 30.0% | |
| AGAGACAAAGTATGTCATAT+TGG | + | tig0017497:24542-24561 | Msa1361440:CDS | 30.0% | |
| GAGACAAAGTATGTCATATT+GGG | + | tig0017497:24543-24562 | Msa1361440:CDS | 30.0% | |
| CAGAACTGTATTAAAAAGCT+AGG | + | tig0017497:23129-23148 | Msa1361440:five_prime_UTR | 30.0% | |
| AATGAAGAGGCTAATTGAAA+AGG | - | tig0017497:23356-23375 | Msa1361440:intergenic | 30.0% | |
| GCAATAGAAATGAAATGAAG+AGG | - | tig0017497:23369-23388 | Msa1361440:intergenic | 30.0% | |
| !! | AATGAAAGTACCAATTTGAG+TGG | - | tig0017497:23429-23448 | Msa1361440:intergenic | 30.0% |
| AATTACTAAGGCTATGAAGA+TGG | + | tig0017497:23611-23630 | Msa1361440:CDS | 30.0% | |
| ! | ACCCTTGATTTTTGATGAAT+AGG | + | tig0017497:24018-24037 | Msa1361440:intron | 30.0% |
| ! | GGTTCCTTTTATATTCTTTC+AGG | + | tig0017497:24111-24130 | Msa1361440:intron | 30.0% |
| AACGCCTGAAAGAATATAAA+AGG | - | tig0017497:24118-24137 | Msa1361440:intergenic | 30.0% | |
| AAATACAAGTGATGCAATTG+TGG | - | tig0017497:24315-24334 | Msa1361440:intergenic | 30.0% | |
| TTGAAATTGCAGACAATTGT+GGG | - | tig0017497:24339-24358 | Msa1361440:intergenic | 30.0% | |
| !!! | AAAGGTTCTAAATTTTGTCG+GGG | - | tig0017497:24382-24401 | Msa1361440:intergenic | 30.0% |
| !!! | CAAAGGTTCTAAATTTTGTC+GGG | - | tig0017497:24383-24402 | Msa1361440:intergenic | 30.0% |
| !!! | GCAAAGGTTCTAAATTTTGT+CGG | - | tig0017497:24384-24403 | Msa1361440:intergenic | 30.0% |
| AACAGTATTTCACATTGCAA+AGG | - | tig0017497:24400-24419 | Msa1361440:intergenic | 30.0% | |
| !!! | GCTGAAATATTTTGAGATTC+TGG | + | tig0017497:24473-24492 | Msa1361440:intron | 30.0% |
| ACATACTTTGTCTCTTTATC+AGG | - | tig0017497:24537-24556 | Msa1361440:intergenic | 30.0% | |
| AGAGACAAAGTATGTCATAT+TGG | + | tig0017497:24542-24561 | Msa1361440:CDS | 30.0% | |
| GAGACAAAGTATGTCATATT+GGG | + | tig0017497:24543-24562 | Msa1361440:CDS | 30.0% | |
| GCTTAACTCTTCAATGAGAA+GGG | - | tig0017497:23058-23077 | None:intergenic | 35.0% | |
| TGCTTAACTCTTCAATGAGA+AGG | - | tig0017497:23059-23078 | None:intergenic | 35.0% | |
| TGTTGCTAGTAGTGAAATGA+AGG | - | tig0017497:23096-23115 | None:intergenic | 35.0% | |
| ACGAAAGAATCTCAAATCGA+TGG | + | tig0017497:23181-23200 | Msa1361440:exon | 35.0% | |
| TGCAGAGATCAATCTTCTAT+TGG | + | tig0017497:23386-23405 | Msa1361440:intron | 35.0% | |
| AGAGATCAATCTTCTATTGG+AGG | + | tig0017497:23389-23408 | Msa1361440:intron | 35.0% | |
| CGTTCTATTTCCACTCAAAT+TGG | + | tig0017497:23416-23435 | Msa1361440:CDS | 35.0% | |
| TTGTTTGTGCAGTGAGAAAT+CGG | + | tig0017497:23562-23581 | Msa1361440:intron | 35.0% | |
| GACTGAAAACAAAGACTGAA+TGG | + | tig0017497:23820-23839 | Msa1361440:intron | 35.0% | |
| TTGATTGTAACCACACATGT+CGG | + | tig0017497:23916-23935 | Msa1361440:intron | 35.0% | |
| GAATGTGTGTCTAGTATTGT+TGG | - | tig0017497:23967-23986 | Msa1361440:intergenic | 35.0% | |
| ! | ACACATTCAATCAGAAGTGT+GGG | + | tig0017497:23979-23998 | Msa1361440:intron | 35.0% |
| CATCAAAAATCAAGGGTGAA+GGG | - | tig0017497:24015-24034 | Msa1361440:intergenic | 35.0% | |
| TCATCAAAAATCAAGGGTGA+AGG | - | tig0017497:24016-24035 | Msa1361440:intergenic | 35.0% | |
| ATGAATAGGAATTGTCCACA+CGG | + | tig0017497:24032-24051 | Msa1361440:intron | 35.0% | |
| !! | TTTTGTGTCATTGCTCATTG+TGG | + | tig0017497:24090-24109 | Msa1361440:intron | 35.0% |
| ATTACCGTTTCTTCAGACAA+AGG | + | tig0017497:24159-24178 | Msa1361440:CDS | 35.0% | |
| AAGACCTTTGTCTGAAGAAA+CGG | - | tig0017497:24166-24185 | Msa1361440:intergenic | 35.0% | |
| TTGTTGTCTGTGTATTGTGA+TGG | + | tig0017497:24261-24280 | Msa1361440:intron | 35.0% | |
| CTTGAAATTGCAGACAATTG+TGG | - | tig0017497:24340-24359 | Msa1361440:intergenic | 35.0% | |
| CACAATTGTCTGCAATTTCA+AGG | + | tig0017497:24338-24357 | Msa1361440:intron | 35.0% | |
| !! | TGAGATTCTGGTAATGGTAA+TGG | + | tig0017497:24485-24504 | Msa1361440:intron | 35.0% |
| CCTATAGTAGCAAATAGGTT+TGG | - | tig0017497:24513-24532 | Msa1361440:intergenic | 35.0% | |
| ! | CCAAACCTATTTGCTACTAT+AGG | + | tig0017497:24510-24529 | Msa1361440:intron | 35.0% |
| GAATCCTCTGAATTATACTC+AGG | + | tig0017497:24638-24657 | Msa1361440:CDS | 35.0% | |
| CTAACCTGAGTATAATTCAG+AGG | - | tig0017497:24645-24664 | Msa1361440:intergenic | 35.0% | |
| GCTTAACTCTTCAATGAGAA+GGG | - | tig0017497:23058-23077 | Msa1361440:intergenic | 35.0% | |
| TGCTTAACTCTTCAATGAGA+AGG | - | tig0017497:23059-23078 | Msa1361440:intergenic | 35.0% | |
| TGTTGCTAGTAGTGAAATGA+AGG | - | tig0017497:23096-23115 | Msa1361440:intergenic | 35.0% | |
| ACGAAAGAATCTCAAATCGA+TGG | + | tig0017497:23181-23200 | Msa1361440:exon | 35.0% | |
| TGCAGAGATCAATCTTCTAT+TGG | + | tig0017497:23386-23405 | Msa1361440:intron | 35.0% | |
| AGAGATCAATCTTCTATTGG+AGG | + | tig0017497:23389-23408 | Msa1361440:intron | 35.0% | |
| CGTTCTATTTCCACTCAAAT+TGG | + | tig0017497:23416-23435 | Msa1361440:CDS | 35.0% | |
| TTGTTTGTGCAGTGAGAAAT+CGG | + | tig0017497:23562-23581 | Msa1361440:intron | 35.0% | |
| GACTGAAAACAAAGACTGAA+TGG | + | tig0017497:23820-23839 | Msa1361440:intron | 35.0% | |
| TTGATTGTAACCACACATGT+CGG | + | tig0017497:23916-23935 | Msa1361440:intron | 35.0% | |
| GAATGTGTGTCTAGTATTGT+TGG | - | tig0017497:23967-23986 | Msa1361440:intergenic | 35.0% | |
| ! | ACACATTCAATCAGAAGTGT+GGG | + | tig0017497:23979-23998 | Msa1361440:intron | 35.0% |
| CATCAAAAATCAAGGGTGAA+GGG | - | tig0017497:24015-24034 | Msa1361440:intergenic | 35.0% | |
| TCATCAAAAATCAAGGGTGA+AGG | - | tig0017497:24016-24035 | Msa1361440:intergenic | 35.0% | |
| ATGAATAGGAATTGTCCACA+CGG | + | tig0017497:24032-24051 | Msa1361440:intron | 35.0% | |
| !! | TTTTGTGTCATTGCTCATTG+TGG | + | tig0017497:24090-24109 | Msa1361440:intron | 35.0% |
| ATTACCGTTTCTTCAGACAA+AGG | + | tig0017497:24159-24178 | Msa1361440:CDS | 35.0% | |
| AAGACCTTTGTCTGAAGAAA+CGG | - | tig0017497:24166-24185 | Msa1361440:intergenic | 35.0% | |
| TTGTTGTCTGTGTATTGTGA+TGG | + | tig0017497:24261-24280 | Msa1361440:intron | 35.0% | |
| CTTGAAATTGCAGACAATTG+TGG | - | tig0017497:24340-24359 | Msa1361440:intergenic | 35.0% | |
| CACAATTGTCTGCAATTTCA+AGG | + | tig0017497:24338-24357 | Msa1361440:intron | 35.0% | |
| !! | TGAGATTCTGGTAATGGTAA+TGG | + | tig0017497:24485-24504 | Msa1361440:intron | 35.0% |
| CCTATAGTAGCAAATAGGTT+TGG | - | tig0017497:24513-24532 | Msa1361440:intergenic | 35.0% | |
| ! | CCAAACCTATTTGCTACTAT+AGG | + | tig0017497:24510-24529 | Msa1361440:intron | 35.0% |
| GAATCCTCTGAATTATACTC+AGG | + | tig0017497:24638-24657 | Msa1361440:CDS | 35.0% | |
| CTAACCTGAGTATAATTCAG+AGG | - | tig0017497:24645-24664 | Msa1361440:intergenic | 35.0% | |
| GAGTGAGAAAGAACGAACAA+GGG | - | tig0017497:23305-23324 | Msa1361440:intergenic | 40.0% | |
| AGAGTGAGAAAGAACGAACA+AGG | - | tig0017497:23306-23325 | Msa1361440:intergenic | 40.0% | |
| CTGAAAATTCACGTGGTTTG+TGG | + | tig0017497:23670-23689 | Msa1361440:CDS | 40.0% | |
| CACACATTCAATCAGAAGTG+TGG | + | tig0017497:23978-23997 | Msa1361440:intron | 40.0% | |
| TCTTCAGACAAAGGTCTTTG+TGG | + | tig0017497:24168-24187 | Msa1361440:CDS | 40.0% | |
| ! | ACCAGAATTCAACTTGCTCA+AGG | - | tig0017497:24229-24248 | Msa1361440:intergenic | 40.0% |
| AAGTGATGCAATTGTGGATG+TGG | - | tig0017497:24309-24328 | Msa1361440:intergenic | 40.0% | |
| CAGGTCCTATAGTAGCAAAT+AGG | - | tig0017497:24518-24537 | Msa1361440:intergenic | 40.0% | |
| GTATGTCATATTGGGAGAGA+AGG | + | tig0017497:24551-24570 | Msa1361440:CDS | 40.0% | |
| GAGTGAGAAAGAACGAACAA+GGG | - | tig0017497:23305-23324 | Msa1361440:intergenic | 40.0% | |
| AGAGTGAGAAAGAACGAACA+AGG | - | tig0017497:23306-23325 | Msa1361440:intergenic | 40.0% | |
| CTGAAAATTCACGTGGTTTG+TGG | + | tig0017497:23670-23689 | Msa1361440:CDS | 40.0% | |
| CACACATTCAATCAGAAGTG+TGG | + | tig0017497:23978-23997 | Msa1361440:intron | 40.0% | |
| TCTTCAGACAAAGGTCTTTG+TGG | + | tig0017497:24168-24187 | Msa1361440:CDS | 40.0% | |
| ! | ACCAGAATTCAACTTGCTCA+AGG | - | tig0017497:24229-24248 | Msa1361440:intergenic | 40.0% |
| AAGTGATGCAATTGTGGATG+TGG | - | tig0017497:24309-24328 | Msa1361440:intergenic | 40.0% | |
| CAGGTCCTATAGTAGCAAAT+AGG | - | tig0017497:24518-24537 | Msa1361440:intergenic | 40.0% | |
| GTATGTCATATTGGGAGAGA+AGG | + | tig0017497:24551-24570 | Msa1361440:CDS | 40.0% | |
| GAATCTCAAATCGATGGCGA+TGG | + | tig0017497:23187-23206 | Msa1361440:exon | 45.0% | |
| !! | AGTGGTGTTGATTGGTGGTT+GGG | - | tig0017497:23261-23280 | Msa1361440:intergenic | 45.0% |
| ! | AACTACGTGCTGTTCAAACC+AGG | + | tig0017497:23646-23665 | Msa1361440:CDS | 45.0% |
| ! | ACTACGTGCTGTTCAAACCA+GGG | + | tig0017497:23647-23666 | Msa1361440:CDS | 45.0% |
| ! | TGGTTTGTGGCAGCCATTTA+CGG | + | tig0017497:23683-23702 | Msa1361440:CDS | 45.0% |
| GTCAGTGCTTCATTGGTGAA+GGG | - | tig0017497:23847-23866 | Msa1361440:intergenic | 45.0% | |
| TGTCAGTGCTTCATTGGTGA+AGG | - | tig0017497:23848-23867 | Msa1361440:intergenic | 45.0% | |
| TGTGTGTGTCAGTGCTTCAT+TGG | - | tig0017497:23854-23873 | Msa1361440:intergenic | 45.0% | |
| ACAAATTAGTACGCACCGTG+TGG | - | tig0017497:24050-24069 | Msa1361440:intergenic | 45.0% | |
| TCAGACAAAGGTCTTTGTGG+TGG | + | tig0017497:24171-24190 | Msa1361440:CDS | 45.0% | |
| CACGTCTGTCAAGATAAGCA+GGG | + | tig0017497:24203-24222 | Msa1361440:CDS | 45.0% | |
| ! | GCCTTGAGCAAGTTGAATTC+TGG | + | tig0017497:24225-24244 | Msa1361440:CDS | 45.0% |
| CATATTGGGAGAGAAGGCTA+AGG | + | tig0017497:24557-24576 | Msa1361440:CDS | 45.0% | |
| GAATCTCAAATCGATGGCGA+TGG | + | tig0017497:23187-23206 | Msa1361440:exon | 45.0% | |
| !! | AGTGGTGTTGATTGGTGGTT+GGG | - | tig0017497:23261-23280 | Msa1361440:intergenic | 45.0% |
| ! | AACTACGTGCTGTTCAAACC+AGG | + | tig0017497:23646-23665 | Msa1361440:CDS | 45.0% |
| ! | ACTACGTGCTGTTCAAACCA+GGG | + | tig0017497:23647-23666 | Msa1361440:CDS | 45.0% |
| ! | TGGTTTGTGGCAGCCATTTA+CGG | + | tig0017497:23683-23702 | Msa1361440:CDS | 45.0% |
| GTCAGTGCTTCATTGGTGAA+GGG | - | tig0017497:23847-23866 | Msa1361440:intergenic | 45.0% | |
| TGTCAGTGCTTCATTGGTGA+AGG | - | tig0017497:23848-23867 | Msa1361440:intergenic | 45.0% | |
| TGTGTGTGTCAGTGCTTCAT+TGG | - | tig0017497:23854-23873 | Msa1361440:intergenic | 45.0% | |
| ACAAATTAGTACGCACCGTG+TGG | - | tig0017497:24050-24069 | Msa1361440:intergenic | 45.0% | |
| TCAGACAAAGGTCTTTGTGG+TGG | + | tig0017497:24171-24190 | Msa1361440:CDS | 45.0% | |
| CACGTCTGTCAAGATAAGCA+GGG | + | tig0017497:24203-24222 | Msa1361440:CDS | 45.0% | |
| ! | GCCTTGAGCAAGTTGAATTC+TGG | + | tig0017497:24225-24244 | Msa1361440:CDS | 45.0% |
| CATATTGGGAGAGAAGGCTA+AGG | + | tig0017497:24557-24576 | Msa1361440:CDS | 45.0% | |
| TCGCTGAGAGAGAGAAAGAG+AGG | - | tig0017497:23158-23177 | Msa1361440:intergenic | 50.0% | |
| !! | GAGTGGTGTTGATTGGTGGT+TGG | - | tig0017497:23262-23281 | Msa1361440:intergenic | 50.0% |
| !! | GATCGGAGAGTGGTGTTGAT+TGG | - | tig0017497:23269-23288 | Msa1361440:intergenic | 50.0% |
| AGGGAGAGATGAGAGGAGAT+CGG | - | tig0017497:23286-23305 | Msa1361440:intergenic | 50.0% | |
| ACGAACAAGGGAGAGATGAG+AGG | - | tig0017497:23293-23312 | Msa1361440:intergenic | 50.0% | |
| ACCAGGGCTGAAAATTCACG+TGG | + | tig0017497:23663-23682 | Msa1361440:CDS | 50.0% | |
| ! | ACCACGTGAATTTTCAGCCC+TGG | - | tig0017497:23667-23686 | Msa1361440:intergenic | 50.0% |
| CAGCCATTTACGGCTCTTCT+CGG | + | tig0017497:23693-23712 | Msa1361440:CDS | 50.0% | |
| TCACCGAGAAGAGCCGTAAA+TGG | - | tig0017497:23699-23718 | Msa1361440:intergenic | 50.0% | |
| CCTGCTTATCTTGACAGACG+TGG | - | tig0017497:24205-24224 | Msa1361440:intergenic | 50.0% | |
| CCACGTCTGTCAAGATAAGC+AGG | + | tig0017497:24202-24221 | Msa1361440:CDS | 50.0% | |
| TCGCTGAGAGAGAGAAAGAG+AGG | - | tig0017497:23158-23177 | Msa1361440:intergenic | 50.0% | |
| !! | GAGTGGTGTTGATTGGTGGT+TGG | - | tig0017497:23262-23281 | Msa1361440:intergenic | 50.0% |
| !! | GATCGGAGAGTGGTGTTGAT+TGG | - | tig0017497:23269-23288 | Msa1361440:intergenic | 50.0% |
| AGGGAGAGATGAGAGGAGAT+CGG | - | tig0017497:23286-23305 | Msa1361440:intergenic | 50.0% | |
| ACGAACAAGGGAGAGATGAG+AGG | - | tig0017497:23293-23312 | Msa1361440:intergenic | 50.0% | |
| ACCAGGGCTGAAAATTCACG+TGG | + | tig0017497:23663-23682 | Msa1361440:CDS | 50.0% | |
| ! | ACCACGTGAATTTTCAGCCC+TGG | - | tig0017497:23667-23686 | Msa1361440:intergenic | 50.0% |
| CAGCCATTTACGGCTCTTCT+CGG | + | tig0017497:23693-23712 | Msa1361440:CDS | 50.0% | |
| TCACCGAGAAGAGCCGTAAA+TGG | - | tig0017497:23699-23718 | Msa1361440:intergenic | 50.0% | |
| CCTGCTTATCTTGACAGACG+TGG | - | tig0017497:24205-24224 | Msa1361440:intergenic | 50.0% | |
| CCACGTCTGTCAAGATAAGC+AGG | + | tig0017497:24202-24221 | Msa1361440:CDS | 50.0% | |
| CTAAACGCTTCCCTTCGCGT+CGG | - | tig0017497:23223-23242 | Msa1361440:intergenic | 55.0% | |
| GGTGGTTGGGAAGACATGAG+AGG | - | tig0017497:23248-23267 | Msa1361440:intergenic | 55.0% | |
| !! | CGGAGAGTGGTGTTGATTGG+TGG | - | tig0017497:23266-23285 | Msa1361440:intergenic | 55.0% |
| GATGAGAGGAGATCGGAGAG+TGG | - | tig0017497:23279-23298 | Msa1361440:intergenic | 55.0% | |
| GCGTTCGATACCGACATGTG+TGG | - | tig0017497:23929-23948 | Msa1361440:intergenic | 55.0% | |
| GTATCGAACGCTGACGAGTG+AGG | + | tig0017497:23938-23957 | Msa1361440:intron | 55.0% | |
| CTAAACGCTTCCCTTCGCGT+CGG | - | tig0017497:23223-23242 | Msa1361440:intergenic | 55.0% | |
| GGTGGTTGGGAAGACATGAG+AGG | - | tig0017497:23248-23267 | Msa1361440:intergenic | 55.0% | |
| !! | CGGAGAGTGGTGTTGATTGG+TGG | - | tig0017497:23266-23285 | Msa1361440:intergenic | 55.0% |
| GATGAGAGGAGATCGGAGAG+TGG | - | tig0017497:23279-23298 | Msa1361440:intergenic | 55.0% | |
| GCGTTCGATACCGACATGTG+TGG | - | tig0017497:23929-23948 | Msa1361440:intergenic | 55.0% | |
| GTATCGAACGCTGACGAGTG+AGG | + | tig0017497:23938-23957 | Msa1361440:intron | 55.0% | |
| CTGCTGCACTCCGACGCGAA+GGG | + | tig0017497:23210-23229 | Msa1361440:CDS | 65.0% | |
| CTGCTGCACTCCGACGCGAA+GGG | + | tig0017497:23210-23229 | Msa1361440:CDS | 65.0% | |
| GCTGCTGCACTCCGACGCGA+AGG | + | tig0017497:23209-23228 | Msa1361440:CDS | 70.0% | |
| GCTGCTGCACTCCGACGCGA+AGG | + | tig0017497:23209-23228 | Msa1361440:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017497 | gene | 23033 | 24671 | 23033 | ID=Msa1361440;Name=Msa1361440 |
| tig0017497 | mRNA | 23033 | 24671 | 23033 | ID=Msa1361440-mRNA-1;Parent=Msa1361440;Name=Msa1361440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=167|1|1|1|0.75|0.8|5|0|187 |
| tig0017497 | exon | 23033 | 23306 | 23033 | ID=Msa1361440-mRNA-1:exon:12389;Parent=Msa1361440-mRNA-1 |
| tig0017497 | exon | 23391 | 23437 | 23391 | ID=Msa1361440-mRNA-1:exon:12390;Parent=Msa1361440-mRNA-1 |
| tig0017497 | exon | 23574 | 23726 | 23574 | ID=Msa1361440-mRNA-1:exon:12391;Parent=Msa1361440-mRNA-1 |
| tig0017497 | exon | 24133 | 24246 | 24133 | ID=Msa1361440-mRNA-1:exon:12392;Parent=Msa1361440-mRNA-1 |
| tig0017497 | exon | 24532 | 24671 | 24532 | ID=Msa1361440-mRNA-1:exon:12393;Parent=Msa1361440-mRNA-1 |
| tig0017497 | five_prime_UTR | 23033 | 23199 | 23033 | ID=Msa1361440-mRNA-1:five_prime_utr;Parent=Msa1361440-mRNA-1 |
| tig0017497 | CDS | 23200 | 23306 | 23200 | ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1 |
| tig0017497 | CDS | 23391 | 23437 | 23391 | ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1 |
| tig0017497 | CDS | 23574 | 23726 | 23574 | ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1 |
| tig0017497 | CDS | 24133 | 24246 | 24133 | ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1 |
| tig0017497 | CDS | 24532 | 24671 | 24532 | ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
