AlfalfaGEDB | Msa1361440

M. sativa cultivar zhongmu-4 / Msa1361440

KEGG: K02136
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0008270 GO:0009507 GO:0009536 GO:0016020 GO:0016469 GO:0019866 GO:0030312 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0046872 GO:0046914 GO:0070013 GO:0071944 GO:0098796 GO:0098798 GO:0098800
PFAM: PF00231.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361440	XP_013458562.1	98.930	187	2	0	1	187	1	187	1.33e-127	372

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361440	sp\|P26360\|ATPG3_IPOBA	78.191	188	38	3	1	187	1	186	2.25e-99	293

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361440	A0A072UU27	98.930	187	2	0	1	187	1	187	6.35e-128	372

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035120	Msa1361440	0.806911	6.535721e-50	-8.615850e-47
Msa0047640	Msa1361440	0.806030	1.002679e-49	-8.615850e-47
Msa0054530	Msa1361440	0.808554	2.925465e-50	-8.615850e-47
Msa0089980	Msa1361440	0.821787	3.353468e-53	-8.615850e-47
Msa0090010	Msa1361440	0.819114	1.376319e-52	-8.615850e-47
Msa0137540	Msa1361440	0.811706	6.121663e-51	-8.615850e-47
Msa0225480	Msa1361440	0.808063	3.723673e-50	-8.615850e-47
Msa0268110	Msa1361440	0.807746	4.347194e-50	-8.615850e-47
Msa0304100	Msa1361440	0.809522	1.814983e-50	-8.615850e-47
Msa0358400	Msa1361440	0.801467	8.882590e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361440	MtrunA17_Chr4g0073341	98.930	187	2	0	1	187	1	187	1.22e-131	372
Msa1361440	MtrunA17_Chr2g0288451	36.170	141	63	5	17	130	9	149	6.77e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361440	AT2G33040.1	71.658	187	49	3	1	187	1	183	3.55e-90	267
Msa1361440	AT4G04640.1	31.677	161	83	3	15	161	32	179	1.05e-13	68.6

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Find 47 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTACGTGCTGTTCAAACC+AGG	0.516036	tig0017497:+23646	Msa1361440:CDS
AAGACCTTTGTCTGAAGAAA+CGG	0.482952	tig0017497:-24163	Msa1361440:intergenic
AATGAAAGTACCAATTTGAG+TGG	0.558490	tig0017497:-23426	Msa1361440:intergenic
AATTACTAAGGCTATGAAGA+TGG	0.542804	tig0017497:+23611	Msa1361440:CDS
ACATACTTTGTCTCTTTATC+AGG	0.264351	tig0017497:-24534	Msa1361440:intergenic
ACCAGAATTCAACTTGCTCA+AGG	0.662579	tig0017497:-24226	Msa1361440:intergenic
ACCAGGGCTGAAAATTCACG+TGG	0.682606	tig0017497:+23663	Msa1361440:CDS
ACGAAAGAATCTCAAATCGA+TGG	0.600840	tig0017497:+23181	Msa1361440:exon
ACGAACAAGGGAGAGATGAG+AGG	0.612203	tig0017497:-23290	Msa1361440:intergenic
ACTACGTGCTGTTCAAACCA+GGG	0.699734	tig0017497:+23647	Msa1361440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAACTGTATTAAAAAGCT+AGG	+	tig0017497:23129-23148	Msa1361440:five_prime_UTR	30.0%
AATGAAGAGGCTAATTGAAA+AGG	-	tig0017497:23356-23375	Msa1361440:intergenic	30.0%
GCAATAGAAATGAAATGAAG+AGG	-	tig0017497:23369-23388	Msa1361440:intergenic	30.0%
AATTACTAAGGCTATGAAGA+TGG	+	tig0017497:23611-23630	Msa1361440:CDS	30.0%
AACGCCTGAAAGAATATAAA+AGG	-	tig0017497:24118-24137	Msa1361440:intergenic	30.0%
AAATACAAGTGATGCAATTG+TGG	-	tig0017497:24315-24334	Msa1361440:intergenic	30.0%
TTGAAATTGCAGACAATTGT+GGG	-	tig0017497:24339-24358	Msa1361440:intergenic	30.0%
AACAGTATTTCACATTGCAA+AGG	-	tig0017497:24400-24419	Msa1361440:intergenic	30.0%
ACATACTTTGTCTCTTTATC+AGG	-	tig0017497:24537-24556	Msa1361440:intergenic	30.0%
AGAGACAAAGTATGTCATAT+TGG	+	tig0017497:24542-24561	Msa1361440:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0017497	gene	23033	24671	23033	ID=Msa1361440;Name=Msa1361440
tig0017497	mRNA	23033	24671	23033	ID=Msa1361440-mRNA-1;Parent=Msa1361440;Name=Msa1361440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=167\|1\|1\|1\|0.75\|0.8\|5\|0\|187
tig0017497	exon	23033	23306	23033	ID=Msa1361440-mRNA-1:exon:12389;Parent=Msa1361440-mRNA-1
tig0017497	exon	23391	23437	23391	ID=Msa1361440-mRNA-1:exon:12390;Parent=Msa1361440-mRNA-1
tig0017497	exon	23574	23726	23574	ID=Msa1361440-mRNA-1:exon:12391;Parent=Msa1361440-mRNA-1
tig0017497	exon	24133	24246	24133	ID=Msa1361440-mRNA-1:exon:12392;Parent=Msa1361440-mRNA-1
tig0017497	exon	24532	24671	24532	ID=Msa1361440-mRNA-1:exon:12393;Parent=Msa1361440-mRNA-1
tig0017497	five_prime_UTR	23033	23199	23033	ID=Msa1361440-mRNA-1:five_prime_utr;Parent=Msa1361440-mRNA-1
tig0017497	CDS	23200	23306	23200	ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1
tig0017497	CDS	23391	23437	23391	ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1
tig0017497	CDS	23574	23726	23574	ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1
tig0017497	CDS	24133	24246	24133	ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1
tig0017497	CDS	24532	24671	24532	ID=Msa1361440-mRNA-1:cds;Parent=Msa1361440-mRNA-1

Gene Sequence

>Msa1361440

ATGGCGATGGCTGCTGCACTCCGACGCGAAGGGAAGCGTTTAGCTCCTCTCATGTCTTCCCAACCACCAATCAACACCACTCTCCGATCTCCTCTCATCTCTCCCTTAGATCAATCTTCTATTGGAGGAGCTCGTTCTATTTCCACTCAAATTGTGAGAAATCGGATGAAGAGTGTCAAGAATATTCAGAAAATTACTAAGGCTATGAAGATGGTTGCTGCGTCTAAACTACGTGCTGTTCAAACCAGGGCTGAAAATTCACGTGGTTTGTGGCAGCCATTTACGGCTCTTCTCGGTGATGCTACAAGCGTTGATGTCAAGAAGAATGTTGTAATTACCGTTTCTTCAGACAAAGGTCTTTGTGGTGGAATCAACTCCACGTCTGTCAAGATAAGCAGGGCCTTGAGCAAGTTGAATTCTGGACCTGATAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAGGCTCAGTTGATTCGTGACTCAAAGAAAGACATTGCACTCAGCTTAACTGAGATACAAAAGAATCCTCTGAATTATACTCAGGTTAGTATATTG

Protein sequence

>Msa1361440

MAMAAALRREGKRLAPLMSSQPPINTTLRSPLISPLDQSSIGGARSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVVITVSSDKGLCGGINSTSVKISRALSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTEIQKNPLNYTQVSIL