AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790410 MtrunA17_Chr2g0277001 95.016 943 34 4 1 938 1 935 0.0 1673
Msa0790410 MtrunA17_Chr7g0275381 93.199 941 56 7 1 938 1 936 0.0 1670
Msa0790410 MtrunA17_Chr1g0155771 94.569 939 46 4 1 938 1 935 0.0 1639
Msa0790410 MtrunA17_Chr6g0468211 57.241 580 135 10 261 836 62 532 0.0 566
Msa0790410 MtrunA17_Chr2g0316781 51.852 405 49 7 166 569 12 271 2.10e-113 349
Msa0790410 MtrunA17_Chr2g0303811 81.935 155 28 0 567 721 1 155 8.37e-86 271
Msa0790410 MtrunA17_Chr6g0468421 57.752 258 41 3 324 581 1 190 1.08e-83 267
Msa0790410 MtrunA17_Chr6g0468011 60.606 198 47 4 261 456 12 180 8.22e-65 216
Msa0790410 MtrunA17_Chr6g0468411 75.556 135 29 1 558 688 5 139 4.65e-63 210
Msa0790410 MtrunA17_Chr2g0303821 61.468 109 41 1 729 836 1 109 2.37e-37 137
Msa0790410 MtrunA17_Chr6g0467941 47.917 144 23 2 545 688 1 92 3.50e-31 118
Msa0790410 MtrunA17_Chr6g0467931 65.347 101 33 2 728 826 1 101 4.81e-31 117
Msa0790410 MtrunA17_Chr6g0468001 57.658 111 25 3 728 836 1 91 2.07e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790410 AT3G56150.2 66.490 946 263 14 1 938 1 900 0.0 1152
Msa0790410 AT3G56150.1 66.490 946 263 14 1 938 1 900 0.0 1152
Msa0790410 AT3G22860.1 63.799 616 204 6 245 850 181 787 0.0 788

Find 270 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATGTTTGTTCTGATTTA+TGG 0.039660 5_3:+1206860 Msa0790410:three_prime_UTR
TCTGGTTGTTATGAGAATTT+AGG 0.156316 5_3:-1202825 None:intergenic
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 5_3:+1203735 Msa0790410:CDS
GATTTCAGATGAAATTTCTT+TGG 0.216565 5_3:+1206800 Msa0790410:three_prime_UTR
GCACTGTAAGCCAGAGATTT+TGG 0.217294 5_3:+1206992 Msa0790410:three_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 5_3:-1203371 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 5_3:-1205950 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 5_3:+1204708 Msa0790410:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 5_3:-1206009 None:intergenic
TGTAAAGATTAGGTATCTTT+TGG 0.245087 5_3:-1203291 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 5_3:-1204408 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 5_3:+1205980 Msa0790410:CDS
AACCAATGGCTTCGAGATTC+TGG 0.262577 5_3:+1202851 Msa0790410:exon
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 5_3:+1203345 Msa0790410:CDS
CTGGTTGTTATGAGAATTTA+GGG 0.266616 5_3:-1202824 None:intergenic
GGAAAATAGCAGGACCTTAA+TGG 0.268698 5_3:+1204440 Msa0790410:CDS
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 5_3:-1203389 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 5_3:-1203979 None:intergenic
TTTGGTTTGTAGGTATCTAT+TGG 0.296703 5_3:-1203071 None:intergenic
CAACAACGGGTTTGGTTTGT+AGG 0.300152 5_3:-1203081 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.301092 5_3:+1206778 Msa0790410:three_prime_UTR
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 5_3:-1203761 None:intergenic
ATCATATGATTCTTTCAGTT+TGG 0.303868 5_3:+1206141 Msa0790410:CDS
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 5_3:-1203398 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 5_3:-1203126 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 5_3:+1204293 Msa0790410:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 5_3:+1204345 Msa0790410:CDS
GGAGGCGGCTATCAGAATTC+AGG 0.346447 5_3:+1206610 Msa0790410:CDS
AATCATCAACCTTTATGTTT+GGG 0.349179 5_3:-1203978 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 5_3:+1206430 Msa0790410:CDS
CCGGGATTTAGTACCTGTTC+TGG 0.353112 5_3:-1204792 None:intergenic
TCTATTGGCTGTATTGTTGT+TGG 0.355511 5_3:-1203056 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 5_3:+1206454 Msa0790410:CDS
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 5_3:+1203663 Msa0790410:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 5_3:+1206681 Msa0790410:CDS
ACTCTCAAGGGTGCAGGCTT+TGG 0.361470 5_3:+1206294 Msa0790410:CDS
ATTTCAGATGAAATTTCTTT+GGG 0.372007 5_3:+1206801 Msa0790410:three_prime_UTR
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 5_3:-1206123 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 5_3:-1204200 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 5_3:-1205776 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 5_3:+1204321 Msa0790410:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 5_3:+1204419 Msa0790410:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 5_3:+1206247 Msa0790410:CDS
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 5_3:-1203556 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 5_3:+1204224 Msa0790410:CDS
CTATTGGCTGTATTGTTGTT+GGG 0.393873 5_3:-1203055 None:intergenic
GCCTTGCCTTGTTTGAGAAT+AGG 0.394600 5_3:-1206497 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 5_3:+1206680 Msa0790410:CDS
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 5_3:+1203760 Msa0790410:CDS
TGATGATGGCGATGCTCCTT+GGG 0.400541 5_3:+1203630 Msa0790410:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 5_3:+1203874 Msa0790410:CDS
TCGAAGCCATTGGTTTAGTC+TGG 0.401988 5_3:-1202843 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 5_3:+1203629 Msa0790410:CDS
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 5_3:+1203330 Msa0790410:CDS
CCGGTCCTCCTGAAACTGTC+AGG 0.411793 5_3:+1205942 Msa0790410:CDS
ATGTAAGATGCACTGATTCC+AGG 0.412950 5_3:-1205805 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 5_3:+1204043 Msa0790410:CDS
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 5_3:+1206436 Msa0790410:CDS
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 5_3:-1204407 None:intergenic
TTAAGTGCATAATAATAAAC+TGG 0.419627 5_3:-1206766 None:intergenic
TAGATAATTTCTCAGTCAAC+TGG 0.421894 5_3:-1206321 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 5_3:-1204454 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 5_3:+1206442 Msa0790410:CDS
AATGAGTTCAACCCTCTTCA+AGG 0.428889 5_3:-1204250 None:intergenic
ACTGTCATCAACAACGGGTT+TGG 0.429963 5_3:-1203089 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 5_3:+1204642 Msa0790410:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 5_3:-1203388 None:intergenic
GAAACTTGTGCCAAAATCTC+TGG 0.436609 5_3:-1207002 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 5_3:+1203969 Msa0790410:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 5_3:-1206406 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 5_3:+1203743 Msa0790410:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 5_3:+1205787 Msa0790410:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 5_3:-1203892 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 5_3:+1206233 Msa0790410:CDS
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 5_3:+1206559 Msa0790410:CDS
CAGAACAAACATTGGGAGCT+GGG 0.459982 5_3:-1206852 None:intergenic
ATGAGAATGAAACTAAGAAA+GGG 0.464510 5_3:+1204013 Msa0790410:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 5_3:-1203574 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 5_3:+1205736 Msa0790410:intron
TCAGAAATGTTGAACTCTCA+AGG 0.471342 5_3:+1206281 Msa0790410:CDS
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 5_3:-1206409 None:intergenic
TCTAGAGGACGGGGAACGAT+TGG 0.474394 5_3:+1206589 Msa0790410:CDS
AACTGTCAGGGATCATGTTA+TGG 0.475362 5_3:+1205955 Msa0790410:CDS
TCTTACATCTGCTATGCTGC+TGG 0.477105 5_3:+1205820 Msa0790410:CDS
TGAACATTGGCTGCCATGTT+GGG 0.479489 5_3:-1205848 None:intergenic
TAATAAACTGGTAAAAGAAA+AGG 0.479905 5_3:-1206754 None:intergenic
AGCTGCAGTTTCTTCTTCAT+CGG 0.482972 5_3:+1202768 None:intergenic
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 5_3:+1203774 Msa0790410:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 5_3:+1203589 Msa0790410:CDS
TTGTTGGGTTCATCATCAAC+GGG 0.486651 5_3:-1203040 None:intergenic
AGAGCCTTGATGTAAAGATT+AGG 0.489911 5_3:-1203301 None:intergenic
TAAGTTGCCCCAGACATGAA+TGG 0.490965 5_3:-1204052 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 5_3:+1204779 Msa0790410:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 5_3:+1204142 Msa0790410:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 5_3:+1206622 Msa0790410:CDS
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 5_3:+1206373 Msa0790410:CDS
GTTGTTGGGTTCATCATCAA+CGG 0.494263 5_3:-1203041 None:intergenic
TCGTCACTGTCATCAACAAC+GGG 0.495380 5_3:-1203094 None:intergenic
TGACATTATTGCATCTCTTG+AGG 0.496021 5_3:+1206021 Msa0790410:CDS
TCAGAACAAACATTGGGAGC+TGG 0.496440 5_3:-1206853 None:intergenic
CATTGGGAGCTGGGAGAGGA+GGG 0.496780 5_3:-1206843 None:intergenic
TGACGGACCCATTCATGTCT+GGG 0.497542 5_3:+1204044 Msa0790410:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 5_3:+1203495 Msa0790410:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 5_3:+1203607 Msa0790410:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 5_3:+1204201 Msa0790410:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 5_3:+1204722 Msa0790410:CDS
AAATCAAGGAGGAGGCGCTT+AGG 0.499787 5_3:+1206095 Msa0790410:CDS
CATAAATCAGAACAAACATT+GGG 0.500452 5_3:-1206859 None:intergenic
ATGAACATTGGCTGCCATGT+TGG 0.505127 5_3:-1205849 None:intergenic
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 5_3:+1203754 Msa0790410:CDS
TCAACGGGTTCAGTATCGTT+AGG 0.505992 5_3:-1203025 None:intergenic
ACATTGGGAGCTGGGAGAGG+AGG 0.506596 5_3:-1206844 None:intergenic
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 5_3:+1203884 Msa0790410:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 5_3:+1206682 Msa0790410:CDS
CAGAAATGTTGAACTCTCAA+GGG 0.508616 5_3:+1206282 Msa0790410:CDS
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 5_3:+1203749 Msa0790410:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 5_3:+1206623 Msa0790410:CDS
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 5_3:-1203835 None:intergenic
ATCCTTCAGCATTTCTAGCA+CGG 0.511752 5_3:-1206071 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 5_3:-1204051 None:intergenic
GGCAGTGGACGTACAGGATA+CGG 0.514533 5_3:+1206517 Msa0790410:CDS
GATGAGAATGAAACTAAGAA+AGG 0.515170 5_3:+1204012 Msa0790410:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 5_3:+1206408 Msa0790410:CDS
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 5_3:+1206378 Msa0790410:CDS
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 5_3:+1203555 Msa0790410:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 5_3:+1203548 Msa0790410:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 5_3:+1204389 Msa0790410:CDS
TGGCGGCTATTCTAGAGGAC+GGG 0.522471 5_3:+1206579 Msa0790410:CDS
AGGACTTGATTATCAAATGT+AGG 0.523141 5_3:+1203452 Msa0790410:CDS
TGTTGAACTCTCAAGGGTGC+AGG 0.524552 5_3:+1206288 Msa0790410:CDS
GAGGCGGCTATCAGAATTCA+GGG 0.525246 5_3:+1206611 Msa0790410:CDS
CTCAACATATTCACGTGTGT+GGG 0.525787 5_3:-1204133 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 5_3:+1206392 Msa0790410:CDS
TCCCCTAAGGCTAACCATGC+GGG 0.529790 5_3:-1206683 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 5_3:+1204182 Msa0790410:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 5_3:+1204715 Msa0790410:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 5_3:+1203656 Msa0790410:CDS
CTCTCCATTATCTCCCTCTA+CGG 0.531803 5_3:-1204325 None:intergenic
GTCCAGAATCTCGAAGCCAT+TGG 0.533546 5_3:-1202853 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 5_3:+1204684 Msa0790410:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 5_3:+1204430 Msa0790410:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 5_3:-1204569 None:intergenic
AGAGGACGGGGAACGATTGG+AGG 0.536414 5_3:+1206592 Msa0790410:CDS
GACAGGCCTCCTGGTGATGA+TGG 0.536973 5_3:+1203616 Msa0790410:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 5_3:+1203200 Msa0790410:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 5_3:+1204398 Msa0790410:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 5_3:+1206403 Msa0790410:CDS
CAAACATTGGGAGCTGGGAG+AGG 0.541139 5_3:-1206847 None:intergenic
TTGTCTGAACTTTATTCTGG+TGG 0.542410 5_3:+1204711 Msa0790410:CDS
AGGCAAGGCAGTGGACGTAC+AGG 0.542622 5_3:+1206511 Msa0790410:CDS
CAAGCTGGGATCAGCCAACT+GGG 0.543584 5_3:+1206248 Msa0790410:CDS
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 5_3:+1206461 Msa0790410:CDS
AGTTCCGGGGTAACAACAAA+CGG 0.544060 5_3:-1204393 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 5_3:+1206234 Msa0790410:CDS
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 5_3:+1203471 Msa0790410:CDS
AATGCTGAAGGATAAAATCA+AGG 0.545420 5_3:+1206081 Msa0790410:CDS
GATACCTAATCTTTACATCA+AGG 0.545550 5_3:+1203297 Msa0790410:CDS
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 5_3:+1206433 Msa0790410:CDS
GGACTTGATTATCAAATGTA+GGG 0.548379 5_3:+1203453 Msa0790410:CDS
TCCTATTCTCAAACAAGGCA+AGG 0.549766 5_3:+1206496 Msa0790410:CDS
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 5_3:+1203599 Msa0790410:CDS
CATAAAGGTTGATGATTCTG+TGG 0.552363 5_3:+1203984 Msa0790410:CDS
CCATAAATCAGAACAAACAT+TGG 0.552425 5_3:-1206860 None:intergenic
AGAATCATATGATGAAGAGA+AGG 0.556503 5_3:-1206131 None:intergenic
GAATTTCCGCCGCTTACTTG+AGG 0.559029 5_3:+1205898 Msa0790410:CDS
CCTGACAGTTTCAGGAGGAC+CGG 0.559804 5_3:-1205942 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 5_3:+1204238 Msa0790410:CDS
TCTCAAACAAGGCAAGGCAG+TGG 0.563066 5_3:+1206502 Msa0790410:CDS
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 5_3:+1203744 Msa0790410:CDS
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 5_3:+1203753 Msa0790410:CDS
AAGAGATGCAATAATGTCAA+AGG 0.567228 5_3:-1206017 None:intergenic
GCATTATCGTTCAGTCAAGC+TGG 0.568957 5_3:+1206550 Msa0790410:CDS
GTGTCCCATGTGATCTCACT+AGG 0.569429 5_3:-1203706 None:intergenic
GGACGGGGAACGATTGGAGG+CGG 0.571631 5_3:+1206595 Msa0790410:CDS
GGAGCATCGCCATCATCACC+AGG 0.573601 5_3:-1203625 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 5_3:+1206404 Msa0790410:CDS
ACGCTTAGCATCATGAACAT+TGG 0.575475 5_3:-1205861 None:intergenic
ATCATGTTATGGCTGCCACA+AGG 0.575690 5_3:+1205966 Msa0790410:CDS
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 5_3:+1203473 Msa0790410:CDS
GTATCACTGATATACAAATA+CGG 0.579558 5_3:+1204471 Msa0790410:CDS
TTATTGCATCTCTTGAGGTG+TGG 0.579762 5_3:+1206026 Msa0790410:CDS
TCTCAACATATTCACGTGTG+TGG 0.579942 5_3:-1204134 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 5_3:+1204716 Msa0790410:CDS
AGTGAGAAACAAACATTCAC+CGG 0.580815 5_3:+1205923 Msa0790410:CDS
CTGAAAATAATGCACCCAGT+TGG 0.581929 5_3:-1206262 None:intergenic
CGGTCCTCCTGAAACTGTCA+GGG 0.584556 5_3:+1205943 Msa0790410:CDS
AAAAGCCTAGTGAGATCACA+TGG 0.585381 5_3:+1203701 Msa0790410:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 5_3:-1203536 None:intergenic
GTTGCTTCATAAACCTCATG+CGG 0.588345 5_3:-1204282 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 5_3:+1206367 Msa0790410:CDS
TGAGAATGAAACTAAGAAAG+GGG 0.591503 5_3:+1204014 Msa0790410:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 5_3:-1206696 None:intergenic
GGTTCATCATCAATATCAGT+GGG 0.592619 5_3:-1203004 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 5_3:-1206437 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.593036 5_3:-1203005 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 5_3:+1204239 Msa0790410:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 5_3:+1206364 Msa0790410:CDS
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 5_3:+1204738 Msa0790410:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 5_3:-1204568 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 5_3:+1204335 Msa0790410:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 5_3:+1206374 Msa0790410:CDS
CATTTACTACAAACCGCATG+AGG 0.596878 5_3:+1204269 Msa0790410:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 5_3:+1203201 Msa0790410:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 5_3:+1205747 Msa0790410:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 5_3:+1206574 Msa0790410:CDS
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 5_3:-1204406 None:intergenic
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 5_3:+1203472 Msa0790410:CDS
TTGGCTGAGATGACCGTAGA+GGG 0.603596 5_3:+1204312 Msa0790410:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 5_3:+1206359 Msa0790410:CDS
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 5_3:+1206562 Msa0790410:CDS
GAAGGATAAAATCAAGGAGG+AGG 0.606776 5_3:+1206087 Msa0790410:CDS
GTGGCGGCTATTCTAGAGGA+CGG 0.606807 5_3:+1206578 Msa0790410:CDS
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 5_3:+1203567 Msa0790410:CDS
CGTAGATACTTCTACCCGCA+TGG 0.610484 5_3:+1206669 Msa0790410:CDS
GAATTCAGGGAGGACTCAAG+GGG 0.615559 5_3:+1206624 Msa0790410:CDS
GGCGGCTATTCTAGAGGACG+GGG 0.620265 5_3:+1206580 Msa0790410:CDS
ACTTGTCCTATTCTCAAACA+AGG 0.620485 5_3:+1206491 Msa0790410:CDS
CTTCGTGTTAGTTTGTTGTG+TGG 0.622006 5_3:+1206946 Msa0790410:three_prime_UTR
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 5_3:+1206370 Msa0790410:CDS
TAACAACCAGACTAAACCAA+TGG 0.622757 5_3:+1202837 Msa0790410:exon
GATGACAGTGACGACGATGA+TGG 0.623470 5_3:+1203103 Msa0790410:CDS
TCCATTAATAAGAACCCTTG+TGG 0.625098 5_3:-1205981 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 5_3:-1203342 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 5_3:+1205967 Msa0790410:CDS
CACTGACCTCAAGTAAGCGG+CGG 0.627273 5_3:-1205904 None:intergenic
GTCGTCACTGTCATCAACAA+CGG 0.635755 5_3:-1203095 None:intergenic
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 5_3:+1206554 Msa0790410:CDS
GGACGTACAGGATACGGTGG+AGG 0.637438 5_3:+1206523 Msa0790410:CDS
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 5_3:+1206464 Msa0790410:CDS
TTATCGTTCAGTCAAGCTGG+TGG 0.641328 5_3:+1206553 Msa0790410:CDS
AAGAAAGGGGATGACTATGA+CGG 0.642172 5_3:+1204027 Msa0790410:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 5_3:+1206200 Msa0790410:CDS
TCAACATATTCACGTGTGTG+GGG 0.645878 5_3:-1204132 None:intergenic
CACCGTGCTAGAAATGCTGA+AGG 0.646843 5_3:+1206069 Msa0790410:CDS
GGCTTCGAGATTCTGGACAC+AGG 0.648433 5_3:+1202858 Msa0790410:CDS
GAAGTTTCAGAATCCGACAC+GGG 0.650738 5_3:-1203580 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 5_3:+1205994 Msa0790410:CDS
AAAATGCGTGCAGAATATGC+TGG 0.655482 5_3:+1203930 Msa0790410:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 5_3:+1203764 Msa0790410:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 5_3:+1204596 Msa0790410:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 5_3:+1206457 Msa0790410:CDS
TCTCACTGACCTCAAGTAAG+CGG 0.659845 5_3:-1205907 None:intergenic
CTCCCCTAAGGCTAACCATG+CGG 0.664230 5_3:-1206684 None:intergenic
TTACCCCGGAACTTGTGGCG+CGG 0.666773 5_3:+1204403 Msa0790410:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 5_3:-1204539 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 5_3:+1203883 Msa0790410:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 5_3:+1206216 Msa0790410:CDS
GCTGCTGGAAGTTCCCAACA+TGG 0.671778 5_3:+1205835 Msa0790410:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 5_3:+1203474 Msa0790410:CDS
TGTGCAAGAACAACAAACTG+AGG 0.676475 5_3:-1204171 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 5_3:+1203905 Msa0790410:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 5_3:+1204045 Msa0790410:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 5_3:+1204143 Msa0790410:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 5_3:-1203581 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 5_3:+1204311 Msa0790410:CDS
CTGACAATACTATGAACACG+AGG 0.689117 5_3:-1206196 None:intergenic
ATTCTTGATCTGATCAACAG+TGG 0.701566 5_3:-1203179 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 5_3:+1203745 Msa0790410:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 5_3:-1203622 None:intergenic
TGCGGGTAGAAGTATCTACG+TGG 0.710114 5_3:-1206666 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 5_3:-1205947 None:intergenic
GCGGGTAGAAGTATCTACGT+GGG 0.720335 5_3:-1206665 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 5_3:+1206625 Msa0790410:CDS
GCTGAAGGATAAAATCAAGG+AGG 0.734791 5_3:+1206084 Msa0790410:CDS
AAAGCCTAGTGAGATCACAT+GGG 0.747188 5_3:+1203702 Msa0790410:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 5_3:+1203432 Msa0790410:CDS
AGTGGACGTACAGGATACGG+TGG 0.758461 5_3:+1206520 Msa0790410:CDS
TTATGGGCATATGCCCACTG+AGG 0.770132 5_3:-1203897 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 5_3:+1206614 Msa0790410:CDS
TTTGTGTCGAAATGTCCATG+TGG 0.823137 5_3:-1204611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATAGAAAAAATAAA+AGG + chr5_3:1204969-1204988 Msa0790410:intron 10.0%
!! CAGAAATTAAATTTGATTAT+TGG + chr5_3:1205098-1205117 Msa0790410:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - chr5_3:1205279-1205298 None:intergenic 15.0%
!!! TAAATTTTTTTGAATTGAGT+GGG - chr5_3:1205350-1205369 None:intergenic 15.0%
!!! ATAAATTTTTTTGAATTGAG+TGG - chr5_3:1205351-1205370 None:intergenic 15.0%
!!! AAAAAATTTATTTTTGCCAT+TGG + chr5_3:1205360-1205379 Msa0790410:intron 15.0%
!!! TTGTTAATTTTTTTTCTTGA+GGG + chr5_3:1206920-1206939 Msa0790410:three_prime_UTR 15.0%
!! ATCTATTTGAAAAAAATAGC+CGG - chr5_3:1204814-1204833 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+AGG - chr5_3:1205018-1205037 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + chr5_3:1205065-1205084 Msa0790410:intron 20.0%
!!! TGTTTTTGTTTTTGTTTCTA+AGG + chr5_3:1205161-1205180 Msa0790410:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + chr5_3:1205195-1205214 Msa0790410:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + chr5_3:1205196-1205215 Msa0790410:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + chr5_3:1205270-1205289 Msa0790410:intron 20.0%
!!! AAATTTTTTTGAATTGAGTG+GGG - chr5_3:1205349-1205368 None:intergenic 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + chr5_3:1205727-1205746 Msa0790410:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - chr5_3:1205779-1205798 None:intergenic 20.0%
!! TAATAAACTGGTAAAAGAAA+AGG - chr5_3:1206757-1206776 None:intergenic 20.0%
!! TTAAGTGCATAATAATAAAC+TGG - chr5_3:1206769-1206788 None:intergenic 20.0%
!! ATTTCAGATGAAATTTCTTT+GGG + chr5_3:1206801-1206820 Msa0790410:three_prime_UTR 20.0%
!!! CTTGTTAATTTTTTTTCTTG+AGG + chr5_3:1206919-1206938 Msa0790410:three_prime_UTR 20.0%
!!! TGTTAATTTTTTTTCTTGAG+GGG + chr5_3:1206921-1206940 Msa0790410:three_prime_UTR 20.0%
!! GTAAAGATTAGGTATCTTTT+GGG - chr5_3:1203293-1203312 None:intergenic 25.0%
!! TGTAAAGATTAGGTATCTTT+TGG - chr5_3:1203294-1203313 None:intergenic 25.0%
!!! CATTTTTTCCACACATTTAT+GGG - chr5_3:1203916-1203935 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - chr5_3:1203981-1204000 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + chr5_3:1204013-1204032 Msa0790410:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + chr5_3:1204471-1204490 Msa0790410:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + chr5_3:1204626-1204645 Msa0790410:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - chr5_3:1204813-1204832 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + chr5_3:1204848-1204867 Msa0790410:intron 25.0%
! AGAAAAAATAAAAGGTGATC+TGG + chr5_3:1204977-1204996 Msa0790410:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + chr5_3:1205197-1205216 Msa0790410:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - chr5_3:1205265-1205284 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - chr5_3:1205266-1205285 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - chr5_3:1205412-1205431 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - chr5_3:1205574-1205593 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - chr5_3:1205575-1205594 None:intergenic 25.0%
!! CATACTTCATATTGGATTTT+TGG + chr5_3:1205628-1205647 Msa0790410:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + chr5_3:1205732-1205751 Msa0790410:intron 25.0%
! ATCATATGATTCTTTCAGTT+TGG + chr5_3:1206141-1206160 Msa0790410:CDS 25.0%
! GATTTCAGATGAAATTTCTT+TGG + chr5_3:1206800-1206819 Msa0790410:three_prime_UTR 25.0%
! CATAAATCAGAACAAACATT+GGG - chr5_3:1206862-1206881 None:intergenic 25.0%
CTGGTTGTTATGAGAATTTA+GGG - chr5_3:1202827-1202846 None:intergenic 30.0%
TCTGGTTGTTATGAGAATTT+AGG - chr5_3:1202828-1202847 None:intergenic 30.0%
!! TTTGGTTTGTAGGTATCTAT+TGG - chr5_3:1203074-1203093 None:intergenic 30.0%
GATACCTAATCTTTACATCA+AGG + chr5_3:1203297-1203316 Msa0790410:CDS 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - chr5_3:1203407-1203426 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + chr5_3:1203452-1203471 Msa0790410:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + chr5_3:1203453-1203472 Msa0790410:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - chr5_3:1203812-1203831 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - chr5_3:1203816-1203835 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - chr5_3:1203917-1203936 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - chr5_3:1203982-1204001 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + chr5_3:1204012-1204031 Msa0790410:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + chr5_3:1204014-1204033 Msa0790410:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + chr5_3:1204224-1204243 Msa0790410:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + chr5_3:1204293-1204312 Msa0790410:CDS 30.0%
TGATACTAACACATCCATTA+AGG - chr5_3:1204457-1204476 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + chr5_3:1204625-1204644 Msa0790410:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + chr5_3:1204708-1204727 Msa0790410:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + chr5_3:1205023-1205042 Msa0790410:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + chr5_3:1205024-1205043 Msa0790410:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + chr5_3:1205198-1205217 Msa0790410:intron 30.0%
!! TATTTTTGCCATTGGTAGTT+CGG + chr5_3:1205368-1205387 Msa0790410:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + chr5_3:1205418-1205437 Msa0790410:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + chr5_3:1205419-1205438 Msa0790410:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + chr5_3:1205561-1205580 Msa0790410:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - chr5_3:1205573-1205592 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + chr5_3:1205603-1205622 Msa0790410:intron 30.0%
TAAAGGCTCATACTTCATAT+TGG + chr5_3:1205620-1205639 Msa0790410:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + chr5_3:1205641-1205660 Msa0790410:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + chr5_3:1205736-1205755 Msa0790410:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + chr5_3:1205994-1206013 Msa0790410:CDS 30.0%
AAGAGATGCAATAATGTCAA+AGG - chr5_3:1206020-1206039 None:intergenic 30.0%
AATGCTGAAGGATAAAATCA+AGG + chr5_3:1206081-1206100 Msa0790410:CDS 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - chr5_3:1206126-1206145 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - chr5_3:1206134-1206153 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - chr5_3:1206324-1206343 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + chr5_3:1206778-1206797 Msa0790410:three_prime_UTR 30.0%
CCATAAATCAGAACAAACAT+TGG - chr5_3:1206863-1206882 None:intergenic 30.0%
CCAATGTTTGTTCTGATTTA+TGG + chr5_3:1206860-1206879 Msa0790410:three_prime_UTR 30.0%
TAACAACCAGACTAAACCAA+TGG + chr5_3:1202837-1202856 Msa0790410:exon 35.0%
TGAATAAACACAGAGAGAGA+CGG - chr5_3:1202935-1202954 None:intergenic 35.0%
GGTTCATCATCAATATCAGT+GGG - chr5_3:1203007-1203026 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - chr5_3:1203008-1203027 None:intergenic 35.0%
! CTATTGGCTGTATTGTTGTT+GGG - chr5_3:1203058-1203077 None:intergenic 35.0%
! TCTATTGGCTGTATTGTTGT+TGG - chr5_3:1203059-1203078 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - chr5_3:1203129-1203148 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + chr5_3:1203153-1203172 Msa0790410:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - chr5_3:1203182-1203201 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + chr5_3:1203200-1203219 Msa0790410:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + chr5_3:1203201-1203220 Msa0790410:CDS 35.0%
AGAGCCTTGATGTAAAGATT+AGG - chr5_3:1203304-1203323 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + chr5_3:1203432-1203451 Msa0790410:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - chr5_3:1203539-1203558 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + chr5_3:1203656-1203675 Msa0790410:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + chr5_3:1203735-1203754 Msa0790410:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + chr5_3:1203984-1204003 Msa0790410:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + chr5_3:1204143-1204162 Msa0790410:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - chr5_3:1204203-1204222 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + chr5_3:1204201-1204220 Msa0790410:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + chr5_3:1204353-1204372 Msa0790410:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - chr5_3:1204441-1204460 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + chr5_3:1204658-1204677 Msa0790410:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + chr5_3:1204711-1204730 Msa0790410:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - chr5_3:1204776-1204795 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + chr5_3:1204825-1204844 Msa0790410:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - chr5_3:1204885-1204904 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - chr5_3:1204933-1204952 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + chr5_3:1205025-1205044 Msa0790410:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + chr5_3:1205042-1205061 Msa0790410:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + chr5_3:1205303-1205322 Msa0790410:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + chr5_3:1205304-1205323 Msa0790410:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + chr5_3:1205305-1205324 Msa0790410:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - chr5_3:1205399-1205418 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - chr5_3:1205469-1205488 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + chr5_3:1205537-1205556 Msa0790410:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - chr5_3:1205613-1205632 None:intergenic 35.0%
! TTTGCCGTATTTCTATCTAC+CGG + chr5_3:1205669-1205688 Msa0790410:intron 35.0%
AGTGAGAAACAAACATTCAC+CGG + chr5_3:1205923-1205942 Msa0790410:CDS 35.0%
TCCATTAATAAGAACCCTTG+TGG - chr5_3:1205984-1206003 None:intergenic 35.0%
TGACATTATTGCATCTCTTG+AGG + chr5_3:1206021-1206040 Msa0790410:CDS 35.0%
GTGTTCATAGTATTGTCAGT+AGG + chr5_3:1206200-1206219 Msa0790410:CDS 35.0%
TCAGAAATGTTGAACTCTCA+AGG + chr5_3:1206281-1206300 Msa0790410:CDS 35.0%
CAGAAATGTTGAACTCTCAA+GGG + chr5_3:1206282-1206301 Msa0790410:CDS 35.0%
ACTTGTCCTATTCTCAAACA+AGG + chr5_3:1206491-1206510 Msa0790410:CDS 35.0%
TTGTTGGGTTCATCATCAAC+GGG - chr5_3:1203043-1203062 None:intergenic 40.0%
GTTGTTGGGTTCATCATCAA+CGG - chr5_3:1203044-1203063 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - chr5_3:1203401-1203420 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - chr5_3:1203584-1203603 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + chr5_3:1203589-1203608 Msa0790410:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - chr5_3:1203649-1203668 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + chr5_3:1203663-1203682 Msa0790410:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + chr5_3:1203701-1203720 Msa0790410:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + chr5_3:1203702-1203721 Msa0790410:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + chr5_3:1203874-1203893 Msa0790410:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + chr5_3:1203930-1203949 Msa0790410:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + chr5_3:1204027-1204046 Msa0790410:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - chr5_3:1204103-1204122 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - chr5_3:1204135-1204154 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - chr5_3:1204136-1204155 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - chr5_3:1204137-1204156 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + chr5_3:1204142-1204161 Msa0790410:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - chr5_3:1204174-1204193 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + chr5_3:1204239-1204258 Msa0790410:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - chr5_3:1204253-1204272 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + chr5_3:1204269-1204288 Msa0790410:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - chr5_3:1204285-1204304 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + chr5_3:1204335-1204354 Msa0790410:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + chr5_3:1204345-1204364 Msa0790410:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - chr5_3:1204440-1204459 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + chr5_3:1204440-1204459 Msa0790410:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - chr5_3:1204542-1204561 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - chr5_3:1204571-1204590 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - chr5_3:1204572-1204591 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + chr5_3:1204596-1204615 Msa0790410:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - chr5_3:1204614-1204633 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + chr5_3:1204659-1204678 Msa0790410:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + chr5_3:1204715-1204734 Msa0790410:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + chr5_3:1204716-1204735 Msa0790410:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + chr5_3:1204779-1204798 Msa0790410:CDS 40.0%
GAATTGAGTGGGGTAAGAAA+AGG - chr5_3:1205339-1205358 None:intergenic 40.0%
! TTGCCGTATTTCTATCTACC+GGG + chr5_3:1205670-1205689 Msa0790410:intron 40.0%
TGACCCGGTAGATAGAAATA+CGG - chr5_3:1205676-1205695 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + chr5_3:1205747-1205766 Msa0790410:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + chr5_3:1205787-1205806 Msa0790410:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - chr5_3:1205808-1205827 None:intergenic 40.0%
ACGCTTAGCATCATGAACAT+TGG - chr5_3:1205864-1205883 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + chr5_3:1205955-1205974 Msa0790410:CDS 40.0%
GCCACAAGGGTTCTTATTAA+TGG + chr5_3:1205980-1205999 Msa0790410:CDS 40.0%
CAATAATGTCAAAGGCCTTC+TGG - chr5_3:1206012-1206031 None:intergenic 40.0%
TTATTGCATCTCTTGAGGTG+TGG + chr5_3:1206026-1206045 Msa0790410:CDS 40.0%
!! ATCCTTCAGCATTTCTAGCA+CGG - chr5_3:1206074-1206093 None:intergenic 40.0%
GCTGAAGGATAAAATCAAGG+AGG + chr5_3:1206084-1206103 Msa0790410:CDS 40.0%
GAAGGATAAAATCAAGGAGG+AGG + chr5_3:1206087-1206106 Msa0790410:CDS 40.0%
CTGACAATACTATGAACACG+AGG - chr5_3:1206199-1206218 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + chr5_3:1206216-1206235 Msa0790410:CDS 40.0%
CTGAAAATAATGCACCCAGT+TGG - chr5_3:1206265-1206284 None:intergenic 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + chr5_3:1206359-1206378 Msa0790410:CDS 40.0%
TCCTATTCTCAAACAAGGCA+AGG + chr5_3:1206496-1206515 Msa0790410:CDS 40.0%
!! CTTCGTGTTAGTTTGTTGTG+TGG + chr5_3:1206946-1206965 Msa0790410:three_prime_UTR 40.0%
!!! GGTTTTGTTTTGCGCGATGA+AGG - chr5_3:1202806-1202825 None:intergenic 45.0%
!! TCGAAGCCATTGGTTTAGTC+TGG - chr5_3:1202846-1202865 None:intergenic 45.0%
AACCAATGGCTTCGAGATTC+TGG + chr5_3:1202851-1202870 Msa0790410:exon 45.0%
! TCAACGGGTTCAGTATCGTT+AGG - chr5_3:1203028-1203047 None:intergenic 45.0%
!! CAACAACGGGTTTGGTTTGT+AGG - chr5_3:1203084-1203103 None:intergenic 45.0%
! ACTGTCATCAACAACGGGTT+TGG - chr5_3:1203092-1203111 None:intergenic 45.0%
TCGTCACTGTCATCAACAAC+GGG - chr5_3:1203097-1203116 None:intergenic 45.0%
GTCGTCACTGTCATCAACAA+CGG - chr5_3:1203098-1203117 None:intergenic 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + chr5_3:1203330-1203349 Msa0790410:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - chr5_3:1203345-1203364 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + chr5_3:1203345-1203364 Msa0790410:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - chr5_3:1203391-1203410 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + chr5_3:1203548-1203567 Msa0790410:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - chr5_3:1203583-1203602 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + chr5_3:1203599-1203618 Msa0790410:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + chr5_3:1203743-1203762 Msa0790410:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + chr5_3:1203744-1203763 Msa0790410:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + chr5_3:1203745-1203764 Msa0790410:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + chr5_3:1203846-1203865 Msa0790410:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + chr5_3:1203884-1203903 Msa0790410:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + chr5_3:1203905-1203924 Msa0790410:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - chr5_3:1204054-1204073 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - chr5_3:1204055-1204074 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + chr5_3:1204182-1204201 Msa0790410:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + chr5_3:1204238-1204257 Msa0790410:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + chr5_3:1204321-1204340 Msa0790410:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - chr5_3:1204328-1204347 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - chr5_3:1204396-1204415 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + chr5_3:1204642-1204661 Msa0790410:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + chr5_3:1204664-1204683 Msa0790410:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + chr5_3:1204792-1204811 Msa0790410:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + chr5_3:1204863-1204882 Msa0790410:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + chr5_3:1205201-1205220 Msa0790410:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + chr5_3:1205202-1205221 Msa0790410:intron 45.0%
! TTGCCATTGGTAGTTCGGTT+TGG + chr5_3:1205373-1205392 Msa0790410:intron 45.0%
! TACGGCAAAAGTTGCCGATT+AGG - chr5_3:1205658-1205677 None:intergenic 45.0%
GATTAAACCCTCACATGACC+CGG - chr5_3:1205691-1205710 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + chr5_3:1205820-1205839 Msa0790410:CDS 45.0%
! TGAACATTGGCTGCCATGTT+GGG - chr5_3:1205851-1205870 None:intergenic 45.0%
! ATGAACATTGGCTGCCATGT+TGG - chr5_3:1205852-1205871 None:intergenic 45.0%
TCTCACTGACCTCAAGTAAG+CGG - chr5_3:1205910-1205929 None:intergenic 45.0%
ACATGATCCCTGACAGTTTC+AGG - chr5_3:1205953-1205972 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + chr5_3:1205966-1205985 Msa0790410:CDS 45.0%
TCATGTTATGGCTGCCACAA+GGG + chr5_3:1205967-1205986 Msa0790410:CDS 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + chr5_3:1206364-1206383 Msa0790410:CDS 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - chr5_3:1206500-1206519 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + chr5_3:1206550-1206569 Msa0790410:CDS 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + chr5_3:1206553-1206572 Msa0790410:CDS 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + chr5_3:1206554-1206573 Msa0790410:CDS 45.0%
AGAATTCAGGGAGGACTCAA+GGG + chr5_3:1206623-1206642 Msa0790410:CDS 45.0%
TCAAGGGGGTTCAACATTGA+GGG + chr5_3:1206639-1206658 Msa0790410:CDS 45.0%
CAGAACAAACATTGGGAGCT+GGG - chr5_3:1206855-1206874 None:intergenic 45.0%
TCAGAACAAACATTGGGAGC+TGG - chr5_3:1206856-1206875 None:intergenic 45.0%
!! ATTTAATTATTATTATTCTT+AGG + chr5_3:1202955-1202974 Msa0790410:intron 5.0%
!! TTTAATTATTATTATTCTTA+GGG + chr5_3:1202956-1202975 Msa0790410:intron 5.0%
GTCCAGAATCTCGAAGCCAT+TGG - chr5_3:1202856-1202875 None:intergenic 50.0%
GATGACAGTGACGACGATGA+TGG + chr5_3:1203103-1203122 Msa0790410:CDS 50.0%
GCTGGGACTCATCTTCTTCT+TGG - chr5_3:1203374-1203393 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - chr5_3:1203392-1203411 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + chr5_3:1203495-1203514 Msa0790410:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + chr5_3:1203630-1203649 Msa0790410:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - chr5_3:1203709-1203728 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + chr5_3:1203774-1203793 Msa0790410:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - chr5_3:1203838-1203857 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + chr5_3:1203883-1203902 Msa0790410:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - chr5_3:1203900-1203919 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + chr5_3:1203969-1203988 Msa0790410:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + chr5_3:1204043-1204062 Msa0790410:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + chr5_3:1204044-1204063 Msa0790410:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + chr5_3:1204311-1204330 Msa0790410:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + chr5_3:1204312-1204331 Msa0790410:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + chr5_3:1204389-1204408 Msa0790410:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + chr5_3:1204398-1204417 Msa0790410:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - chr5_3:1204432-1204451 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + chr5_3:1204663-1204682 Msa0790410:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + chr5_3:1204722-1204741 Msa0790410:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + chr5_3:1204738-1204757 Msa0790410:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - chr5_3:1204795-1204814 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + chr5_3:1205203-1205222 Msa0790410:intron 50.0%
TGGCCAAACCGAACTACCAA+TGG - chr5_3:1205379-1205398 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + chr5_3:1205680-1205699 Msa0790410:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + chr5_3:1205681-1205700 Msa0790410:intron 50.0%
GAATTTCCGCCGCTTACTTG+AGG + chr5_3:1205898-1205917 Msa0790410:CDS 50.0%
TGATCCCTGACAGTTTCAGG+AGG - chr5_3:1205950-1205969 None:intergenic 50.0%
CACCGTGCTAGAAATGCTGA+AGG + chr5_3:1206069-1206088 Msa0790410:CDS 50.0%
!! AAATCAAGGAGGAGGCGCTT+AGG + chr5_3:1206095-1206114 Msa0790410:CDS 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + chr5_3:1206233-1206252 Msa0790410:CDS 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + chr5_3:1206234-1206253 Msa0790410:CDS 50.0%
! TGTTGAACTCTCAAGGGTGC+AGG + chr5_3:1206288-1206307 Msa0790410:CDS 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + chr5_3:1206367-1206386 Msa0790410:CDS 50.0%
TCTCAAACAAGGCAAGGCAG+TGG + chr5_3:1206502-1206521 Msa0790410:CDS 50.0%
GAGGCGGCTATCAGAATTCA+GGG + chr5_3:1206611-1206630 Msa0790410:CDS 50.0%
CAGAATTCAGGGAGGACTCA+AGG + chr5_3:1206622-1206641 Msa0790410:CDS 50.0%
GAATTCAGGGAGGACTCAAG+GGG + chr5_3:1206624-1206643 Msa0790410:CDS 50.0%
AATTCAGGGAGGACTCAAGG+GGG + chr5_3:1206625-1206644 Msa0790410:CDS 50.0%
CTCAAGGGGGTTCAACATTG+AGG + chr5_3:1206638-1206657 Msa0790410:CDS 50.0%
CAAGGGGGTTCAACATTGAG+GGG + chr5_3:1206640-1206659 Msa0790410:CDS 50.0%
!! GCGGGTAGAAGTATCTACGT+GGG - chr5_3:1206668-1206687 None:intergenic 50.0%
!! TGCGGGTAGAAGTATCTACG+TGG - chr5_3:1206669-1206688 None:intergenic 50.0%
CGTAGATACTTCTACCCGCA+TGG + chr5_3:1206669-1206688 Msa0790410:CDS 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + chr5_3:1206681-1206700 Msa0790410:CDS 50.0%
GGCTTCGAGATTCTGGACAC+AGG + chr5_3:1202858-1202877 Msa0790410:CDS 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + chr5_3:1203471-1203490 Msa0790410:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + chr5_3:1203472-1203491 Msa0790410:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + chr5_3:1203480-1203499 Msa0790410:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - chr5_3:1203484-1203503 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + chr5_3:1203489-1203508 Msa0790410:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + chr5_3:1203555-1203574 Msa0790410:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + chr5_3:1203607-1203626 Msa0790410:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + chr5_3:1203629-1203648 Msa0790410:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + chr5_3:1204045-1204064 Msa0790410:CDS 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - chr5_3:1204433-1204452 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + chr5_3:1204430-1204449 Msa0790410:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - chr5_3:1204436-1204455 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + chr5_3:1204668-1204687 Msa0790410:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + chr5_3:1205204-1205223 Msa0790410:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + chr5_3:1205313-1205332 Msa0790410:intron 55.0%
GCTGCTGGAAGTTCCCAACA+TGG + chr5_3:1205835-1205854 Msa0790410:CDS 55.0%
CACTGACCTCAAGTAAGCGG+CGG - chr5_3:1205907-1205926 None:intergenic 55.0%
CCTGACAGTTTCAGGAGGAC+CGG - chr5_3:1205945-1205964 None:intergenic 55.0%
CGGTCCTCCTGAAACTGTCA+GGG + chr5_3:1205943-1205962 Msa0790410:CDS 55.0%
CAAGCTGGGATCAGCCAACT+GGG + chr5_3:1206248-1206267 Msa0790410:CDS 55.0%
! ACTCTCAAGGGTGCAGGCTT+TGG + chr5_3:1206294-1206313 Msa0790410:CDS 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + chr5_3:1206370-1206389 Msa0790410:CDS 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + chr5_3:1206404-1206423 Msa0790410:CDS 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + chr5_3:1206454-1206473 Msa0790410:CDS 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + chr5_3:1206457-1206476 Msa0790410:CDS 55.0%
GGCAGTGGACGTACAGGATA+CGG + chr5_3:1206517-1206536 Msa0790410:CDS 55.0%
AGTGGACGTACAGGATACGG+TGG + chr5_3:1206520-1206539 Msa0790410:CDS 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + chr5_3:1206559-1206578 Msa0790410:CDS 55.0%
! GTGGCGGCTATTCTAGAGGA+CGG + chr5_3:1206578-1206597 Msa0790410:CDS 55.0%
! TGGCGGCTATTCTAGAGGAC+GGG + chr5_3:1206579-1206598 Msa0790410:CDS 55.0%
TCTAGAGGACGGGGAACGAT+TGG + chr5_3:1206589-1206608 Msa0790410:CDS 55.0%
GGAGGCGGCTATCAGAATTC+AGG + chr5_3:1206610-1206629 Msa0790410:CDS 55.0%
GCGGCTATCAGAATTCAGGG+AGG + chr5_3:1206614-1206633 Msa0790410:CDS 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + chr5_3:1206680-1206699 Msa0790410:CDS 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + chr5_3:1206682-1206701 Msa0790410:CDS 55.0%
TCCCCTAAGGCTAACCATGC+GGG - chr5_3:1206686-1206705 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - chr5_3:1206687-1206706 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - chr5_3:1206699-1206718 None:intergenic 55.0%
CAAACATTGGGAGCTGGGAG+AGG - chr5_3:1206850-1206869 None:intergenic 55.0%
GGGAGAGTCCTGAGAGTGAG+GGG + chr5_3:1203473-1203492 Msa0790410:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + chr5_3:1203474-1203493 Msa0790410:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - chr5_3:1203559-1203578 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - chr5_3:1203577-1203596 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + chr5_3:1203616-1203635 Msa0790410:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - chr5_3:1203625-1203644 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - chr5_3:1203628-1203647 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + chr5_3:1203749-1203768 Msa0790410:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + chr5_3:1204403-1204422 Msa0790410:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - chr5_3:1204409-1204428 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - chr5_3:1204410-1204429 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - chr5_3:1204411-1204430 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + chr5_3:1204684-1204703 Msa0790410:CDS 60.0%
CCGGTCCTCCTGAAACTGTC+AGG + chr5_3:1205942-1205961 Msa0790410:CDS 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + chr5_3:1206247-1206266 Msa0790410:CDS 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + chr5_3:1206374-1206393 Msa0790410:CDS 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + chr5_3:1206392-1206411 Msa0790410:CDS 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + chr5_3:1206403-1206422 Msa0790410:CDS 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - chr5_3:1206409-1206428 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + chr5_3:1206408-1206427 Msa0790410:CDS 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - chr5_3:1206412-1206431 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + chr5_3:1206430-1206449 Msa0790410:CDS 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + chr5_3:1206461-1206480 Msa0790410:CDS 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + chr5_3:1206464-1206483 Msa0790410:CDS 60.0%
AGGCAAGGCAGTGGACGTAC+AGG + chr5_3:1206511-1206530 Msa0790410:CDS 60.0%
GGACGTACAGGATACGGTGG+AGG + chr5_3:1206523-1206542 Msa0790410:CDS 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + chr5_3:1206562-1206581 Msa0790410:CDS 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + chr5_3:1206574-1206593 Msa0790410:CDS 60.0%
! GGCGGCTATTCTAGAGGACG+GGG + chr5_3:1206580-1206599 Msa0790410:CDS 60.0%
AGAGGACGGGGAACGATTGG+AGG + chr5_3:1206592-1206611 Msa0790410:CDS 60.0%
CATTGGGAGCTGGGAGAGGA+GGG - chr5_3:1206846-1206865 None:intergenic 60.0%
ACATTGGGAGCTGGGAGAGG+AGG - chr5_3:1206847-1206866 None:intergenic 60.0%
TCTGGAAGCCAGGGGCAGGA+AGG + chr5_3:1203753-1203772 Msa0790410:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + chr5_3:1203754-1203773 Msa0790410:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - chr5_3:1203764-1203783 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + chr5_3:1203764-1203783 Msa0790410:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - chr5_3:1203895-1203914 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + chr5_3:1206373-1206392 Msa0790410:CDS 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + chr5_3:1206378-1206397 Msa0790410:CDS 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + chr5_3:1206433-1206452 Msa0790410:CDS 65.0%
ACCACCACCAGCAGCTGCAG+CGG - chr5_3:1206440-1206459 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + chr5_3:1206442-1206461 Msa0790410:CDS 65.0%
GGACGGGGAACGATTGGAGG+CGG + chr5_3:1206595-1206614 Msa0790410:CDS 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + chr5_3:1203567-1203586 Msa0790410:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + chr5_3:1203760-1203779 Msa0790410:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + chr5_3:1204419-1204438 Msa0790410:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + chr5_3:1206436-1206455 Msa0790410:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1202777 1207014 1202777 ID=Msa0790410;Name=Msa0790410
chr5_3 mRNA 1202777 1207014 1202777 ID=Msa0790410-mRNA-1;Parent=Msa0790410;Name=Msa0790410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=79|1|1|1|1|1|3|297|938
chr5_3 exon 1202777 1202879 1202777 ID=Msa0790410-mRNA-1:exon:423;Parent=Msa0790410-mRNA-1
chr5_3 exon 1202977 1204800 1202977 ID=Msa0790410-mRNA-1:exon:424;Parent=Msa0790410-mRNA-1
chr5_3 exon 1205749 1207014 1205749 ID=Msa0790410-mRNA-1:exon:425;Parent=Msa0790410-mRNA-1
chr5_3 five_prime_UTR 1202777 1202855 1202777 ID=Msa0790410-mRNA-1:five_prime_utr;Parent=Msa0790410-mRNA-1
chr5_3 CDS 1202856 1202879 1202856 ID=Msa0790410-mRNA-1:cds;Parent=Msa0790410-mRNA-1
chr5_3 CDS 1202977 1204800 1202977 ID=Msa0790410-mRNA-1:cds;Parent=Msa0790410-mRNA-1
chr5_3 CDS 1205749 1206717 1205749 ID=Msa0790410-mRNA-1:cds;Parent=Msa0790410-mRNA-1
chr5_3 three_prime_UTR 1206718 1207014 1206718 ID=Msa0790410-mRNA-1:three_prime_utr;Parent=Msa0790410-mRNA-1
Gene Sequence

>Msa0790410

ATGGCTTCGAGATTCTGGACACAGGGTAACAGCGATAGTGACGATGACGAACCCACTGATATTGATGATGAACCTAACGATACTGAACCCGTTGATGATGAACCCAACAACAATACAGCCAATAGATACCTACAAACCAAACCCGTTGTTGATGACAGTGACGACGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATACCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTTCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCTAAGCGTAAGATCATCAGTAAGAATTTCCGCCGCTTACTTGAGGTCAGTGAGAAACAAACATTCACCGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGAGGTGTGGAAATTTGTGAAAAATCGTGACACCGTGCTAGAAATGCTGAAGGATAAAATCAAGGAGGAGGCGCTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTCAGTTTGGATCAGCTCACAAATTTTTTTGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCAGAAATGTTGAACTCTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATCGTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGAAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGTGGACGTACAGGATACGGTGGAGGAAGAGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGCGGCTATTCTAGAGGACGGGGAACGATTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCAACATTGAGGGGAACCCACGTAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA
Protein sequence

>Msa0790410

MASRFWTQGNSDSDDDEPTDIDDEPNDTEPVDDEPNNNTANRYLQTKPVVDDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRISAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLEVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDSFSLDQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVELSRVQALAFQLTEKLSIVAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTIGGGYQNSGRTQGGSTLRGTHVDTSTRMVSLRGVRA*