AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411500 MtrunA17_Chr4g0070981 97.573 206 5 0 1 206 1 206 1.14e-148 419
Msa1411500 MtrunA17_Chr2g0299681 89.806 206 21 0 1 206 1 206 7.29e-136 387
Msa1411500 MtrunA17_Chr8g0342861 87.379 206 26 0 1 206 1 206 6.46e-132 377
Msa1411500 MtrunA17_Chr2g0329931 86.893 206 27 0 1 206 1 206 7.38e-131 374
Msa1411500 MtrunA17_Chr2g0297261 60.123 163 65 0 41 203 34 196 5.02e-66 208
Msa1411500 MtrunA17_Chr1g0169331 48.889 180 63 1 56 206 6 185 2.94e-50 167
Msa1411500 MtrunA17_Chr7g0247191 38.830 188 101 2 19 206 139 312 1.17e-34 128
Msa1411500 MtrunA17_Chr7g0247221 38.298 188 102 2 19 206 132 305 6.10e-34 126
Msa1411500 MtrunA17_Chr7g0247181 38.298 188 102 2 19 206 129 302 6.24e-34 126
Msa1411500 MtrunA17_Chr8g0342851 59.140 93 36 1 71 161 3 95 3.72e-29 110
Msa1411500 MtrunA17_Chr4g0003441 43.046 151 84 2 47 195 114 264 5.05e-27 107
Msa1411500 MtrunA17_Chr6g0461751 36.471 170 101 2 41 203 140 309 1.92e-26 105
Msa1411500 MtrunA17_Chr4g0063551 35.359 181 101 2 42 206 141 321 2.07e-26 105
Msa1411500 MtrunA17_Chr3g0098121 36.310 168 103 2 40 203 151 318 4.72e-26 105
Msa1411500 MtrunA17_Chr7g0271121 42.953 149 75 3 66 206 131 277 4.93e-26 105
Msa1411500 MtrunA17_Chr3g0107851 36.932 176 99 3 40 206 116 288 5.09e-26 104
Msa1411500 MtrunA17_Chr3g0121351 37.640 178 100 4 40 206 144 321 6.71e-26 104
Msa1411500 MtrunA17_Chr3g0095031 38.095 168 96 3 45 206 94 259 7.60e-26 103
Msa1411500 MtrunA17_Chr4g0076491 34.615 208 111 4 17 203 254 457 1.74e-25 103
Msa1411500 MtrunA17_Chr6g0483491 36.686 169 104 2 41 206 10 178 3.61e-25 101
Msa1411500 MtrunA17_Chr7g0236841 36.686 169 104 2 41 206 10 178 4.78e-25 101
Msa1411500 MtrunA17_Chr5g0442191 36.686 169 97 4 45 206 85 250 6.88e-25 101
Msa1411500 MtrunA17_Chr7g0270131 36.257 171 104 2 41 206 232 402 7.05e-25 101
Msa1411500 MtrunA17_Chr6g0449741 38.462 169 88 3 47 203 255 419 7.86e-25 101
Msa1411500 MtrunA17_Chr1g0179761 35.912 181 104 6 28 201 71 246 1.00e-24 100
Msa1411500 MtrunA17_Chr1g0193491 34.272 213 117 5 4 206 87 286 1.23e-24 100
Msa1411500 MtrunA17_Chr4g0040761 32.738 168 110 2 42 206 20 187 2.74e-24 99.8
Msa1411500 MtrunA17_Chr4g0025131 35.000 160 101 2 41 197 56 215 3.15e-24 96.7
Msa1411500 MtrunA17_Chr7g0236831 31.959 194 105 5 39 206 161 353 3.66e-24 99.8
Msa1411500 MtrunA17_Chr5g0409981 37.433 187 103 4 28 206 95 275 7.14e-24 98.6
Msa1411500 MtrunA17_Chr1g0176041 35.028 177 105 2 40 206 153 329 7.42e-24 98.6
Msa1411500 MtrunA17_Chr2g0310581 32.642 193 125 3 17 206 31 221 8.84e-24 98.2
Msa1411500 MtrunA17_Chr2g0300291 34.911 169 105 3 40 203 140 308 9.05e-22 92.8
Msa1411500 MtrunA17_Chr3g0137891 43.333 120 66 2 78 195 1 120 9.83e-21 86.3
Msa1411500 MtrunA17_Chr6g0466611 30.952 168 107 1 41 199 142 309 1.00e-20 89.7
Msa1411500 MtrunA17_Chr4g0058591 33.918 171 108 1 41 206 202 372 1.04e-20 89.4
Msa1411500 MtrunA17_Chr1g0200181 30.508 177 109 4 41 203 145 321 1.48e-20 89.0
Msa1411500 MtrunA17_Chr2g0330401 33.333 171 109 1 41 206 96 266 2.05e-20 88.6
Msa1411500 MtrunA17_Chr4g0039471 33.908 174 112 2 36 206 218 391 2.56e-20 87.8
Msa1411500 MtrunA17_Chr1g0157691 29.944 177 110 4 41 203 147 323 3.07e-20 88.2
Msa1411500 MtrunA17_Chr1g0149251 41.667 120 68 2 78 195 1 120 3.33e-20 87.0
Msa1411500 MtrunA17_Chr2g0277821 32.759 174 109 2 41 206 504 677 6.27e-20 87.4
Msa1411500 MtrunA17_Chr2g0293631 30.435 184 120 2 24 203 483 662 7.65e-20 87.0
Msa1411500 MtrunA17_Chr8g0349951 37.500 136 84 1 41 175 10 145 9.04e-20 82.0
Msa1411500 MtrunA17_Chr4g0062301 32.143 168 99 5 50 206 106 269 3.01e-19 85.1
Msa1411500 MtrunA17_Chr6g0475251 33.136 169 95 2 45 203 115 275 3.28e-19 85.1
Msa1411500 MtrunA17_Chr3g0114081 33.333 168 104 4 47 206 22 189 2.11e-18 82.8
Msa1411500 MtrunA17_Chr6g0449911 32.558 172 108 3 41 206 165 334 5.52e-18 81.6
Msa1411500 MtrunA17_Chr8g0386451 31.285 179 108 6 42 206 289 466 9.91e-18 80.9
Msa1411500 MtrunA17_Chr2g0307471 31.034 174 112 4 40 206 90 262 1.32e-17 80.5
Msa1411500 MtrunA17_Chr4g0029191 30.286 175 113 4 41 206 44 218 1.50e-17 80.5
Msa1411500 MtrunA17_Chr8g0347161 31.461 178 109 5 42 206 103 280 3.56e-17 79.3
Msa1411500 MtrunA17_Chr2g0301281 29.714 175 114 4 41 206 41 215 4.32e-17 79.0
Msa1411500 MtrunA17_Chr8g0347171 30.899 178 110 5 42 206 161 338 1.16e-16 77.8
Msa1411500 MtrunA17_Chr8g0347151 30.337 178 111 4 42 206 202 379 3.78e-16 76.3
Msa1411500 MtrunA17_Chr1g0192021 30.899 178 112 4 41 207 26 203 7.10e-16 75.5
Msa1411500 MtrunA17_Chr1g0204391 30.435 184 102 2 49 206 52 235 2.61e-15 73.9
Msa1411500 MtrunA17_Chr2g0309551 28.571 182 106 4 41 201 109 287 7.68e-15 72.4
Msa1411500 MtrunA17_Chr5g0443991 31.544 149 88 5 68 206 102 246 3.97e-13 67.4
Msa1411500 MtrunA17_Chr3g0145781 27.222 180 115 3 24 192 120 294 9.83e-13 66.2
Msa1411500 MtrunA17_Chr4g0074521 30.065 153 98 2 49 192 90 242 1.71e-12 65.5
Msa1411500 MtrunA17_Chr0c30g0494091 30.065 153 98 2 49 192 90 242 1.83e-12 65.5
Msa1411500 MtrunA17_Chr4g0034411 31.544 149 88 5 68 206 102 246 3.25e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411500 AT1G54270.1 86.473 207 25 2 1 206 1 205 1.22e-126 363
Msa1411500 AT3G13920.1 85.437 206 29 1 1 206 1 205 1.68e-126 363
Msa1411500 AT3G13920.2 85.437 206 29 1 1 206 1 205 8.34e-126 361
Msa1411500 AT3G13920.5 85.437 206 29 1 1 206 5 209 9.92e-126 361
Msa1411500 AT1G54270.2 84.058 207 25 3 1 206 1 200 6.11e-120 346
Msa1411500 AT3G13920.4 83.010 206 29 2 1 206 1 200 9.88e-120 346
Msa1411500 AT1G72730.1 80.676 207 39 1 1 206 1 207 9.52e-119 343
Msa1411500 AT3G13920.3 89.888 178 18 0 29 206 18 195 7.69e-115 333
Msa1411500 AT3G19760.1 58.084 167 70 0 37 203 32 198 3.56e-64 204
Msa1411500 AT1G51380.2 53.988 163 75 0 41 203 23 185 1.69e-60 191
Msa1411500 AT1G51380.4 53.988 163 75 0 41 203 23 185 3.35e-60 191
Msa1411500 AT1G51380.3 53.988 163 75 0 41 203 23 185 4.18e-60 190
Msa1411500 AT1G51380.1 53.988 163 75 0 41 203 23 185 2.93e-59 191
Msa1411500 AT3G61240.2 42.458 179 92 2 22 200 117 284 2.73e-38 138
Msa1411500 AT3G61240.1 42.458 179 92 2 22 200 117 284 2.73e-38 138
Msa1411500 AT2G45810.1 41.081 185 95 2 22 206 147 317 1.13e-36 134
Msa1411500 AT4G00660.1 38.378 185 103 1 19 203 121 294 4.36e-36 132
Msa1411500 AT4G00660.2 38.378 185 103 1 19 203 121 294 4.36e-36 132
Msa1411500 AT5G26742.1 36.842 209 109 5 9 206 80 276 4.80e-28 111
Msa1411500 AT5G26742.2 36.842 209 109 5 9 206 80 276 4.80e-28 111
Msa1411500 AT5G11170.1 39.884 173 101 3 26 195 31 203 2.69e-27 107
Msa1411500 AT5G11200.1 39.884 173 101 3 26 195 31 203 2.69e-27 107
Msa1411500 AT5G11200.3 39.884 173 101 3 26 195 31 203 4.75e-27 107
Msa1411500 AT5G11200.2 39.884 173 101 3 26 195 31 203 5.06e-27 107
Msa1411500 AT2G33730.1 33.816 207 120 3 17 206 281 487 6.41e-27 107
Msa1411500 AT3G02065.3 33.010 206 126 2 6 203 80 281 8.23e-27 107
Msa1411500 AT3G02065.2 33.010 206 126 2 6 203 80 281 8.23e-27 107
Msa1411500 AT2G42520.2 35.407 209 115 5 16 206 129 335 8.65e-27 107
Msa1411500 AT2G42520.1 35.407 209 115 5 16 206 129 335 8.65e-27 107
Msa1411500 AT2G42520.3 35.407 209 115 5 16 206 129 335 8.65e-27 107
Msa1411500 AT4G16630.1 36.612 183 109 3 31 206 155 337 1.25e-26 107
Msa1411500 AT5G26742.3 39.306 173 79 5 45 206 26 183 2.85e-26 105
Msa1411500 AT3G22330.1 38.462 169 94 4 45 206 109 274 4.33e-26 105
Msa1411500 AT3G22310.2 37.278 169 96 4 45 206 121 286 7.14e-26 104
Msa1411500 AT3G22310.1 37.278 169 96 4 45 206 121 286 7.31e-26 104
Msa1411500 AT3G58570.1 36.508 189 103 4 33 206 136 322 8.17e-26 104
Msa1411500 AT1G77030.1 33.333 168 109 2 42 206 30 197 1.29e-25 104
Msa1411500 AT2G47330.1 36.782 174 99 2 41 206 229 399 1.44e-24 101
Msa1411500 AT5G63120.1 37.059 170 102 1 42 206 167 336 1.65e-24 100
Msa1411500 AT5G63120.3 37.059 170 102 1 42 206 167 336 1.73e-24 100
Msa1411500 AT5G63120.4 37.059 170 102 1 42 206 167 336 1.73e-24 100
Msa1411500 AT5G63120.5 37.059 170 102 1 42 206 167 336 1.73e-24 100
Msa1411500 AT5G63120.2 37.059 170 102 1 42 206 167 336 2.45e-24 100
Msa1411500 AT1G16280.1 35.503 169 106 1 41 206 59 227 3.08e-24 99.8
Msa1411500 AT3G53110.1 36.111 180 102 6 33 201 81 258 2.57e-23 97.1
Msa1411500 AT3G58510.1 35.795 176 93 5 43 206 160 327 4.11e-23 96.7
Msa1411500 AT3G58510.3 35.795 176 93 5 43 206 160 327 4.11e-23 96.7
Msa1411500 AT3G58510.2 35.795 176 93 5 43 206 160 327 4.11e-23 96.7
Msa1411500 AT1G55150.1 33.918 171 108 1 41 206 100 270 6.23e-23 95.9
Msa1411500 AT1G55150.2 33.918 171 108 1 41 206 125 295 6.82e-23 95.9
Msa1411500 AT5G60990.1 35.135 185 105 4 36 206 5 188 1.91e-22 94.4
Msa1411500 AT5G14610.4 37.209 172 100 5 41 206 170 339 2.82e-22 94.4
Msa1411500 AT1G31970.1 37.209 172 97 3 41 203 117 286 3.02e-22 94.4
Msa1411500 AT5G14610.2 37.209 172 100 5 41 206 162 331 4.43e-22 94.0
Msa1411500 AT5G14610.6 37.209 172 100 5 41 206 162 331 5.16e-22 93.6
Msa1411500 AT5G14610.5 37.209 172 100 5 41 206 170 339 5.44e-22 93.6
Msa1411500 AT1G12770.2 30.939 181 110 3 41 206 111 291 2.07e-21 92.0
Msa1411500 AT1G12770.1 30.939 181 110 3 41 206 111 291 2.07e-21 92.0
Msa1411500 AT3G02065.1 39.130 138 76 2 77 206 10 147 2.24e-21 90.9
Msa1411500 AT5G65900.1 33.140 172 108 3 41 206 155 325 2.80e-21 91.7
Msa1411500 AT3G01540.1 35.882 170 105 3 41 206 159 328 1.10e-20 89.7
Msa1411500 AT3G01540.4 35.882 170 105 3 41 206 159 328 1.14e-20 89.7
Msa1411500 AT3G01540.2 35.882 170 105 3 41 206 159 328 1.14e-20 89.7
Msa1411500 AT3G01540.3 35.882 170 105 3 41 206 159 328 1.14e-20 89.7
Msa1411500 AT5G11170.2 43.333 120 66 2 78 195 1 120 2.14e-20 87.8
Msa1411500 AT5G62190.1 36.747 166 95 1 51 206 107 272 3.48e-20 88.6
Msa1411500 AT4G33370.1 31.073 177 108 4 41 203 98 274 9.25e-20 87.0
Msa1411500 AT3G16840.2 30.729 192 109 3 39 206 190 381 1.20e-19 87.0
Msa1411500 AT3G16840.1 30.729 192 109 3 39 206 189 380 1.24e-19 87.0
Msa1411500 AT1G20920.2 33.728 169 104 3 46 206 197 365 2.02e-19 86.3
Msa1411500 AT3G18600.1 30.994 171 113 2 41 206 90 260 5.28e-19 85.1
Msa1411500 AT3G06480.2 31.395 172 114 1 39 206 434 605 5.56e-19 85.1
Msa1411500 AT1G20920.4 33.728 169 104 3 46 206 535 703 6.56e-19 84.7
Msa1411500 AT1G20920.6 33.728 169 104 3 46 206 535 703 6.56e-19 84.7
Msa1411500 AT1G20920.3 33.728 169 104 3 46 206 535 703 6.56e-19 84.7
Msa1411500 AT1G20920.7 33.728 169 104 3 46 206 535 703 6.56e-19 84.7
Msa1411500 AT1G20920.5 33.728 169 104 3 46 206 535 703 6.56e-19 84.7
Msa1411500 AT1G20920.1 33.728 169 104 3 46 206 535 703 6.56e-19 84.7
Msa1411500 AT3G06480.1 31.395 172 114 1 39 206 434 605 1.17e-18 84.0
Msa1411500 AT5G51280.1 27.751 209 127 5 15 203 119 323 1.77e-18 83.6
Msa1411500 AT2G07750.1 31.443 194 117 6 29 206 362 555 1.80e-18 83.6
Msa1411500 AT1G71370.1 32.544 169 105 4 47 206 23 191 4.06e-18 82.4
Msa1411500 AT1G28180.1 37.500 136 77 2 79 206 12 147 4.14e-18 81.6
Msa1411500 AT4G34910.1 31.285 179 111 4 41 207 47 225 5.07e-18 82.0
Msa1411500 AT3G09620.2 33.728 169 104 3 46 206 403 571 6.28e-18 82.0
Msa1411500 AT3G09620.1 33.728 169 104 3 46 206 402 570 6.40e-18 82.0
Msa1411500 AT4G09730.1 27.273 176 119 2 37 203 109 284 9.96e-18 81.3
Msa1411500 AT5G14610.1 34.503 171 104 5 42 206 231 399 1.10e-17 81.3
Msa1411500 AT1G63250.1 31.383 188 113 6 35 206 321 508 1.79e-17 80.5
Msa1411500 AT5G14610.7 35.443 158 94 5 55 206 45 200 3.66e-17 79.7
Msa1411500 AT5G14610.3 35.443 158 94 5 55 206 45 200 3.66e-17 79.7
Msa1411500 AT1G71280.2 31.325 166 97 5 47 203 24 181 1.02e-16 77.4
Msa1411500 AT5G63630.1 29.469 207 125 6 16 206 32 233 2.14e-16 77.4
Msa1411500 AT1G71280.1 31.361 169 99 5 47 206 24 184 2.21e-16 77.0
Msa1411500 AT5G05450.1 31.325 166 105 4 50 206 26 191 2.40e-16 77.4
Msa1411500 AT5G63630.2 29.469 207 125 6 16 206 226 427 4.35e-16 76.6
Msa1411500 AT2G40700.1 28.409 176 115 5 41 206 31 205 5.55e-16 76.3
Msa1411500 AT5G08620.1 30.102 196 119 5 24 206 69 259 9.06e-16 75.5
Msa1411500 AT5G08610.1 30.899 178 110 4 42 206 384 561 1.12e-15 75.5
Msa1411500 AT5G19210.2 29.333 150 100 1 49 192 85 234 1.41e-15 74.7
Msa1411500 AT1G28180.2 40.909 110 51 3 79 177 12 118 1.28e-14 67.8
Msa1411500 AT3G06980.1 30.061 163 102 4 41 192 375 536 2.82e-12 65.5

Find 94 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGACGACACTTGTTAAAA+TGG 0.238528 tig0023820:-3442 Msa1411500:five_prime_UTR
ACAAACATCTTGATGTAATC+TGG 0.288428 tig0023820:+767 None:intergenic
CGCTAGTTGGTCAAACTAAC+TGG 0.301312 tig0023820:+3370 None:intergenic
CGGAGTTAGTTAACGGAGTT+AGG 0.302052 tig0023820:+3178 None:intergenic
CAGCTGATGGAGATGAATTC+TGG 0.313882 tig0023820:-2261 Msa1411500:CDS
GAGCGAAGAGGGCATGGAGG+GGG 0.319591 tig0023820:-432 Msa1411500:three_prime_UTR
GACACTTGTTAAAATGGTTT+TGG 0.326020 tig0023820:-3436 Msa1411500:five_prime_UTR
TTGACTGAGAGGGGTAAATT+AGG 0.328799 tig0023820:-3347 Msa1411500:five_prime_UTR
ATGAAGCAGAAATAAGAAAA+TGG 0.337646 tig0023820:+512 None:intergenic
GTAATTGACAAAAGTGAAAA+AGG 0.338331 tig0023820:+670 None:intergenic
ACACTTAACAGAGCTGAAAA+TGG 0.340248 tig0023820:+484 None:intergenic
TCAACTCCGCGGCGTAGATC+CGG 0.346393 tig0023820:-3217 Msa1411500:five_prime_UTR
TTCTATCTTGCAGTTATGGC+TGG 0.354302 tig0023820:-2463 Msa1411500:intron
AGCGAAGAGGGCATGGAGGG+GGG 0.368421 tig0023820:-431 Msa1411500:three_prime_UTR
TTCTCGAGGTTTCAAAGATC+AGG 0.384116 tig0023820:-720 Msa1411500:CDS
AGAGCGAAGAGGGCATGGAG+GGG 0.398251 tig0023820:-433 Msa1411500:three_prime_UTR
CAACAGGCTCAGTCTGGAAC+CGG 0.398765 tig0023820:-1061 Msa1411500:CDS
ATACGATAAAACCAAGCAAC+AGG 0.405290 tig0023820:+3285 None:intergenic
CTTTACCTTACCCTGTTGCT+TGG 0.405864 tig0023820:-3296 Msa1411500:five_prime_UTR
GCGAAGAGGGCATGGAGGGG+GGG 0.406539 tig0023820:-430 Msa1411500:three_prime_UTR
GAAGAGCGAAGAGGGCATGG+AGG 0.415095 tig0023820:-435 Msa1411500:three_prime_UTR
CAACTCCGCGGCGTAGATCC+GGG 0.416571 tig0023820:-3216 Msa1411500:five_prime_UTR
CTCAGGGGCATTTATGCATA+TGG 0.421726 tig0023820:-2181 Msa1411500:intron
GGGACTTGATGTTATTCAAC+AGG 0.422508 tig0023820:-1077 Msa1411500:CDS
TTCGGTTTAATCCACTTTCA+AGG 0.427640 tig0023820:-3149 Msa1411500:intron
TCACATTGTAGTCAAGTTGC+TGG 0.431595 tig0023820:+1008 None:intergenic
TGTGACTCAGTGCCAGGCCT+TGG 0.434416 tig0023820:-990 Msa1411500:CDS
GTTATTCAACAGGCTCAGTC+TGG 0.446972 tig0023820:-1067 Msa1411500:CDS
TACAACAATTATGAAATAGA+TGG 0.450501 tig0023820:+695 None:intergenic
GATCTACGCCGCGGAGTTGA+GGG 0.454750 tig0023820:+3220 None:intergenic
GCCATCTGCTATTCAGCAAA+GGG 0.457115 tig0023820:-1119 Msa1411500:CDS
AAGAGCGAAGAGGGCATGGA+GGG 0.460096 tig0023820:-434 Msa1411500:three_prime_UTR
CATGTTGTGGTTGGTACTCC+TGG 0.466328 tig0023820:-827 Msa1411500:CDS
TGGAGACTATCTAGGTGTTA+AGG 0.466474 tig0023820:-912 Msa1411500:CDS
AAGCAACAGGGTAAGGTAAA+GGG 0.468637 tig0023820:+3298 None:intergenic
CTACAATGTGACTCAGTGCC+AGG 0.484625 tig0023820:-996 Msa1411500:CDS
GAGAAGGTTATGCGTGCGCT+TGG 0.485297 tig0023820:-932 Msa1411500:CDS
CAAGCAACAGGGTAAGGTAA+AGG 0.487292 tig0023820:+3297 None:intergenic
AAAACAGCAACTTTCTGCTC+TGG 0.488201 tig0023820:-1037 Msa1411500:CDS
TCTCTCAGGATTGCAGCTGA+TGG 0.488638 tig0023820:-2274 Msa1411500:intron
CGTGCGCTTGGAGACTATCT+AGG 0.494302 tig0023820:-920 Msa1411500:CDS
CAAACATCTTGATGTAATCT+GGG 0.495526 tig0023820:+768 None:intergenic
GAGGGGTCACAATTCGATGC+TGG 0.497994 tig0023820:-2430 Msa1411500:CDS
CCCTCTCAGTCAACGCTAGT+TGG 0.499173 tig0023820:+3357 None:intergenic
AGCATCGAATTGTGACCCCT+CGG 0.501118 tig0023820:+2432 None:intergenic
CGGGAAGAGCGAAGAGGGCA+TGG 0.502175 tig0023820:-438 Msa1411500:three_prime_UTR
TGGAATGAGGGAAACGGAAA+AGG 0.507036 tig0023820:-3413 Msa1411500:five_prime_UTR
ATCAAGTGGTGTTCATGTTG+TGG 0.507583 tig0023820:-840 Msa1411500:CDS
GGATCTACGCCGCGGAGTTG+AGG 0.513351 tig0023820:+3219 None:intergenic
TAAAACCAAGCAACAGGGTA+AGG 0.520451 tig0023820:+3291 None:intergenic
AGGGGTCACAATTCGATGCT+GGG 0.520845 tig0023820:-2429 Msa1411500:CDS
GCATCGAATTGTGACCCCTC+GGG 0.523997 tig0023820:+2433 None:intergenic
GGAGTTAGTTAACGGAGTTA+GGG 0.527772 tig0023820:+3179 None:intergenic
ATAGCGAGATACCTTGAAAG+TGG 0.529238 tig0023820:+3138 None:intergenic
AAAGCGACGGAGTTAGTTAA+CGG 0.531964 tig0023820:+3171 None:intergenic
CCCCTTTGCTGAATAGCAGA+TGG 0.532541 tig0023820:+1118 None:intergenic
TGCTGAGCAAGCTCACGAGT+TGG 0.532963 tig0023820:+959 None:intergenic
TTACATCAAGATGTTTGTGT+TGG 0.535747 tig0023820:-762 Msa1411500:CDS
GTTTGTTAGAGAATCTCCTC+AGG 0.536968 tig0023820:-2198 Msa1411500:CDS
AACATCAAGTCCCTTGCAGA+AGG 0.540831 tig0023820:+1087 None:intergenic
GACCAACGTATTCTATCAAG+TGG 0.551798 tig0023820:-854 Msa1411500:CDS
ACCAACTAGCGTTGACTGAG+AGG 0.554134 tig0023820:-3358 Msa1411500:five_prime_UTR
TTTGACGGGAAGAGCGAAGA+GGG 0.556399 tig0023820:-443 Msa1411500:three_prime_UTR
AGCATATCAAACACACGACC+AGG 0.568622 tig0023820:+809 None:intergenic
AGTGGTGTTCATGTTGTGGT+TGG 0.573575 tig0023820:-836 Msa1411500:CDS
AACAGGCTCAGTCTGGAACC+GGG 0.573707 tig0023820:-1060 Msa1411500:CDS
AGCCATCTGCTATTCAGCAA+AGG 0.576198 tig0023820:-1120 Msa1411500:CDS
ATGGCTGGACTTGCACCCGA+GGG 0.585147 tig0023820:-2448 Msa1411500:CDS
AACTCCGCGGCGTAGATCCG+GGG 0.585487 tig0023820:-3215 Msa1411500:five_prime_UTR
ATTCTGGACTTCTTATGATG+AGG 0.585617 tig0023820:-2245 Msa1411500:CDS
CAAGATGTTTGTGTTGGATG+AGG 0.589017 tig0023820:-756 Msa1411500:CDS
TTGGAGCTAAAACCAAGGCC+TGG 0.589196 tig0023820:+978 None:intergenic
TATGGCTGGACTTGCACCCG+AGG 0.596497 tig0023820:-2449 Msa1411500:CDS
CCAACTAGCGTTGACTGAGA+GGG 0.600177 tig0023820:-3357 Msa1411500:five_prime_UTR
GCTGATGAAATGCTTTCTCG+AGG 0.601323 tig0023820:-734 Msa1411500:CDS
GCTTGCTCAGCAGATTGAGA+AGG 0.608979 tig0023820:-948 Msa1411500:CDS
GGGGATAGTTCCCTTCTGCA+AGG 0.611798 tig0023820:-1098 Msa1411500:CDS
GGGATAGTTCCCTTCTGCAA+GGG 0.612393 tig0023820:-1097 Msa1411500:CDS
ACATCAAGTCCCTTGCAGAA+GGG 0.620896 tig0023820:+1088 None:intergenic
CAACTAGCGTTGACTGAGAG+GGG 0.630133 tig0023820:-3356 Msa1411500:five_prime_UTR
TTTGTTAGAGAATCTCCTCA+GGG 0.631297 tig0023820:-2197 Msa1411500:CDS
AAGGTGCATGCTTGTGTCGG+AGG 0.632831 tig0023820:-893 Msa1411500:CDS
GTTAAGGTGCATGCTTGTGT+CGG 0.644815 tig0023820:-896 Msa1411500:CDS
ACGAGTTGGAGCTAAAACCA+AGG 0.644823 tig0023820:+973 None:intergenic
TGGATTAAACCGAAAAGCGA+CGG 0.648057 tig0023820:+3158 None:intergenic
TACGATAAAACCAAGCAACA+GGG 0.666972 tig0023820:+3286 None:intergenic
CATCTGCTATTCAGCAAAGG+GGG 0.672902 tig0023820:-1117 Msa1411500:CDS
TGGCTGGACTTGCACCCGAG+GGG 0.685827 tig0023820:-2447 Msa1411500:CDS
CCATCTGCTATTCAGCAAAG+GGG 0.689569 tig0023820:-1118 Msa1411500:CDS
CACCACTTGATAGAATACGT+TGG 0.711575 tig0023820:+852 None:intergenic
CATATGCATAAATGCCCCTG+AGG 0.718966 tig0023820:+2182 None:intergenic
AACTCCCCGGATCTACGCCG+CGG 0.720835 tig0023820:+3211 None:intergenic
TTGTTAGAGAATCTCCTCAG+GGG 0.744236 tig0023820:-2196 Msa1411500:CDS
GAGTTGAGGGATGAAAACGA+AGG 0.764414 tig0023820:+3233 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAAAAATTCAAAATATA+TGG - tig0023820:2612-2631 Msa1411500:intron 10.0%
!! TAAAATAAGATAGAAATAGT+TGG + tig0023820:904-923 None:intergenic 15.0%
!!! AGTTACAACATTTTTTTTTT+TGG + tig0023820:2354-2373 None:intergenic 15.0%
!! TATGTTATAACTGTTATGTT+AGG - tig0023820:1087-1106 Msa1411500:CDS 20.0%
!! TAGTACATGAAAAAAATGAA+GGG + tig0023820:1489-1508 None:intergenic 20.0%
!!! TGTTTTAATGTAGGAATTTT+TGG - tig0023820:1512-1531 Msa1411500:intron 20.0%
!! TGAAATCATTATTACTAGTT+TGG - tig0023820:1541-1560 Msa1411500:intron 20.0%
!! TATATTGTTCTTAATGTCTT+TGG - tig0023820:1723-1742 Msa1411500:intron 20.0%
!! GAAAAAGAGACTTATAAAAA+GGG + tig0023820:1795-1814 None:intergenic 20.0%
!! TGAAAAAGAGACTTATAAAA+AGG + tig0023820:1796-1815 None:intergenic 20.0%
!! TCACATATATTGAGAAAAAT+TGG - tig0023820:1820-1839 Msa1411500:intron 20.0%
!!! TTTTTGAATTAAGACTACAA+GGG + tig0023820:2117-2136 None:intergenic 20.0%
!!! TTTTTTGAATTAAGACTACA+AGG + tig0023820:2118-2137 None:intergenic 20.0%
!!! TTGAATTTTTAAGAGTACAA+CGG + tig0023820:2606-2625 None:intergenic 20.0%
!! TACAACAATTATGAAATAGA+TGG + tig0023820:3168-3187 None:intergenic 20.0%
!!! TTAAGTGTTTTGTTTCTTTT+TGG - tig0023820:3391-3410 Msa1411500:five_prime_UTR 20.0%
! TGAAAGTGAAATATGAAAGA+TGG + tig0023820:758-777 None:intergenic 25.0%
!!! TGTTTCATGTTTTAACTGTT+AGG - tig0023820:964-983 Msa1411500:CDS 25.0%
!!! TTTGTGTTGTTTTATACTGT+TGG - tig0023820:1013-1032 Msa1411500:CDS 25.0%
!!! TTGTGTTGTTTTATACTGTT+GGG - tig0023820:1014-1033 Msa1411500:CDS 25.0%
! TCTCACTTATGTAATTTAGT+CGG + tig0023820:1143-1162 None:intergenic 25.0%
! ATTACATAAGTGAGACAATT+TGG - tig0023820:1148-1167 Msa1411500:intron 25.0%
! TTACATAAGTGAGACAATTT+GGG - tig0023820:1149-1168 Msa1411500:intron 25.0%
! TTCAAGATAGCTTATGAAAA+TGG - tig0023820:1215-1234 Msa1411500:intron 25.0%
! CTAGTACATGAAAAAAATGA+AGG + tig0023820:1490-1509 None:intergenic 25.0%
!!! GTACTAGTTTGTTTTAATGT+AGG - tig0023820:1503-1522 Msa1411500:intron 25.0%
!!! GTTTGGTTACCTTTTTTTTA+TGG - tig0023820:1558-1577 Msa1411500:intron 25.0%
! GAGAAAAAGCCATAAAAAAA+AGG + tig0023820:1570-1589 None:intergenic 25.0%
!!! TTATGATAGTTTTGATGCTA+TGG - tig0023820:1639-1658 Msa1411500:intron 25.0%
!!! TATGATAGTTTTGATGCTAT+GGG - tig0023820:1640-1659 Msa1411500:intron 25.0%
!! AGAGAATAACAATATTTTCC+AGG + tig0023820:1761-1780 None:intergenic 25.0%
!! AATATTGTTATTCTCTGTCA+TGG - tig0023820:1765-1784 Msa1411500:intron 25.0%
!! TTGTGGAAAATTTTATGTGT+TGG - tig0023820:1870-1889 Msa1411500:intron 25.0%
!! TGTGGAAAATTTTATGTGTT+GGG - tig0023820:1871-1890 Msa1411500:intron 25.0%
!!! CAGTTTGCTAAAAAAAATAG+TGG + tig0023820:2291-2310 None:intergenic 25.0%
! GTGCATAACTAATTAACTAT+TGG - tig0023820:2388-2407 Msa1411500:intron 25.0%
! TTTGAAAGATGCCTTATATT+TGG - tig0023820:2524-2543 Msa1411500:intron 25.0%
! TTGAAAGATGCCTTATATTT+GGG - tig0023820:2525-2544 Msa1411500:intron 25.0%
! GACTAATTATAAGGACAATT+TGG + tig0023820:2563-2582 None:intergenic 25.0%
! ATTGTCCTTATAATTAGTCA+TGG - tig0023820:2564-2583 Msa1411500:intron 25.0%
!!! TATTGTTTTTTTCTCTACGA+TGG - tig0023820:2672-2691 Msa1411500:intron 25.0%
!!! ATTGTTTTTTTCTCTACGAT+GGG - tig0023820:2673-2692 Msa1411500:intron 25.0%
! GTAATTGACAAAAGTGAAAA+AGG + tig0023820:3193-3212 None:intergenic 25.0%
! ACATAAAAAAACAACACAGA+AGG + tig0023820:3219-3238 None:intergenic 25.0%
! AAAAGTAAAAAGACAAGTGT+GGG + tig0023820:3248-3267 None:intergenic 25.0%
! ATGAAGCAGAAATAAGAAAA+TGG + tig0023820:3351-3370 None:intergenic 25.0%
!!! GTTTCTTTTTGGAATTTTGA+CGG - tig0023820:3402-3421 Msa1411500:five_prime_UTR 25.0%
!!! TTTCTTTTTGGAATTTTGAC+GGG - tig0023820:3403-3422 Msa1411500:five_prime_UTR 25.0%
! AAAGACGACACTTGTTAAAA+TGG - tig0023820:418-437 Msa1411500:three_prime_UTR 30.0%
!! GACACTTGTTAAAATGGTTT+TGG - tig0023820:424-443 Msa1411500:three_prime_UTR 30.0%
!!! ACTTGTTAAAATGGTTTTGG+TGG - tig0023820:427-446 Msa1411500:three_prime_UTR 30.0%
AAATAGTTGGAAAAGCAAAG+AGG + tig0023820:891-910 None:intergenic 30.0%
!!! CATGTTTTAACTGTTAGGTT+AGG - tig0023820:969-988 Msa1411500:CDS 30.0%
!! TTGTTTTATACTGTTGGGTT+AGG - tig0023820:1019-1038 Msa1411500:CDS 30.0%
!! TGTTATGTTAGGTTAGCTTT+AGG - tig0023820:1098-1117 Msa1411500:CDS 30.0%
!! GTTATGTTAGGTTAGCTTTA+GGG - tig0023820:1099-1118 Msa1411500:CDS 30.0%
AAACAACTTATTTGCAGGAA+TGG + tig0023820:1321-1340 None:intergenic 30.0%
!! TTTTTATGGCTTTTTCTCTC+AGG - tig0023820:1572-1591 Msa1411500:intron 30.0%
! TATTTTCCAGGTGTAAGTAA+AGG + tig0023820:1749-1768 None:intergenic 30.0%
! AAATTTTATGTGTTGGGATG+TGG - tig0023820:1877-1896 Msa1411500:intron 30.0%
! AATTTTATGTGTTGGGATGT+GGG - tig0023820:1878-1897 Msa1411500:intron 30.0%
AGTGAATGATTGTTACCAAA+CGG + tig0023820:2002-2021 None:intergenic 30.0%
TTGGTTGAATTTGTAGTGTT+TGG + tig0023820:2203-2222 None:intergenic 30.0%
TGAAAGATGCCTTATATTTG+GGG - tig0023820:2526-2545 Msa1411500:intron 30.0%
TCCTTATAATTAGTCATGGA+AGG - tig0023820:2568-2587 Msa1411500:intron 30.0%
TCCTTCCATGACTAATTATA+AGG + tig0023820:2572-2591 None:intergenic 30.0%
! TAGACACTTTCTGTTTTCTT+TGG - tig0023820:2649-2668 Msa1411500:intron 30.0%
CAAACATCTTGATGTAATCT+GGG + tig0023820:3095-3114 None:intergenic 30.0%
ACAAACATCTTGATGTAATC+TGG + tig0023820:3096-3115 None:intergenic 30.0%
TTACATCAAGATGTTTGTGT+TGG - tig0023820:3098-3117 Msa1411500:intron 30.0%
GAAAAGTAAAAAGACAAGTG+TGG + tig0023820:3249-3268 None:intergenic 30.0%
!!! AAAATGGTTTTGGTGGAATG+AGG - tig0023820:434-453 Msa1411500:three_prime_UTR 35.0%
!!! AAATGGTTTTGGTGGAATGA+GGG - tig0023820:435-454 Msa1411500:three_prime_UTR 35.0%
TACGATAAAACCAAGCAACA+GGG + tig0023820:577-596 None:intergenic 35.0%
ATACGATAAAACCAAGCAAC+AGG + tig0023820:578-597 None:intergenic 35.0%
TTCGGTTTAATCCACTTTCA+AGG - tig0023820:711-730 Msa1411500:CDS 35.0%
TGGCTAAACAACTTATTTGC+AGG + tig0023820:1326-1345 None:intergenic 35.0%
!! CTGTTTCTATCTTGCAGTTA+TGG - tig0023820:1393-1412 Msa1411500:intron 35.0%
ATTCTGGACTTCTTATGATG+AGG - tig0023820:1615-1634 Msa1411500:intron 35.0%
TTTGTTAGAGAATCTCCTCA+GGG - tig0023820:1663-1682 Msa1411500:intron 35.0%
GTGAATGATTGTTACCAAAC+GGG + tig0023820:2001-2020 None:intergenic 35.0%
CTTGTAAGGTAGCTAGTTAA+CGG + tig0023820:2238-2257 None:intergenic 35.0%
AACAAAACACACATGCACTA+AGG + tig0023820:2316-2335 None:intergenic 35.0%
GGAAGAAGAAAAGTCAATGT+TGG + tig0023820:2439-2458 None:intergenic 35.0%
!! TTGATGCTACTGATTTGTCT+TGG + tig0023820:2460-2479 None:intergenic 35.0%
GAAAGATGCCTTATATTTGG+GGG - tig0023820:2527-2546 Msa1411500:intron 35.0%
!! AAAAAGTGCCCCCAAATATA+AGG + tig0023820:2538-2557 None:intergenic 35.0%
ACACTTAACAGAGCTGAAAA+TGG + tig0023820:3379-3398 None:intergenic 35.0%
! TTTTGGTGGAATGAGGGAAA+CGG - tig0023820:441-460 Msa1411500:three_prime_UTR 40.0%
TTGACTGAGAGGGGTAAATT+AGG - tig0023820:513-532 Msa1411500:three_prime_UTR 40.0%
AAGCAACAGGGTAAGGTAAA+GGG + tig0023820:565-584 None:intergenic 40.0%
TAAAACCAAGCAACAGGGTA+AGG + tig0023820:572-591 None:intergenic 40.0%
GGAGTTAGTTAACGGAGTTA+GGG + tig0023820:684-703 None:intergenic 40.0%
AAAGCGACGGAGTTAGTTAA+CGG + tig0023820:692-711 None:intergenic 40.0%
!!! TAACTAACTCCGTCGCTTTT+CGG - tig0023820:693-712 Msa1411500:exon 40.0%
TGGATTAAACCGAAAAGCGA+CGG + tig0023820:705-724 None:intergenic 40.0%
ATAGCGAGATACCTTGAAAG+TGG + tig0023820:725-744 None:intergenic 40.0%
TTTCACTTTCATCGCGACAA+TGG - tig0023820:767-786 Msa1411500:CDS 40.0%
AGACAATTTGGGCAAACGTA+TGG - tig0023820:1160-1179 Msa1411500:intron 40.0%
TTCTATCTTGCAGTTATGGC+TGG - tig0023820:1397-1416 Msa1411500:intron 40.0%
! GTTTGTTAGAGAATCTCCTC+AGG - tig0023820:1662-1681 Msa1411500:intron 40.0%
TTGTTAGAGAATCTCCTCAG+GGG - tig0023820:1664-1683 Msa1411500:intron 40.0%
!! TGGTAGAAGTGTTCCTTAGA+CGG - tig0023820:1840-1859 Msa1411500:intron 40.0%
AGTGTTCCTTAGACGGTAAA+AGG - tig0023820:1847-1866 Msa1411500:intron 40.0%
ATGACGAAAAATGACCCGTT+TGG - tig0023820:1984-2003 Msa1411500:intron 40.0%
! CTAATAGCGGAAGACTTGTA+AGG + tig0023820:2252-2271 None:intergenic 40.0%
GCTGTTAAGCTAGCTAATAG+CGG + tig0023820:2265-2284 None:intergenic 40.0%
ACTAGTATGACTCGTGCTTT+AGG - tig0023820:2709-2728 Msa1411500:intron 40.0%
GGGACTTGATGTTATTCAAC+AGG - tig0023820:2783-2802 Msa1411500:intron 40.0%
AAAACAGCAACTTTCTGCTC+TGG - tig0023820:2823-2842 Msa1411500:intron 40.0%
! TCACATTGTAGTCAAGTTGC+TGG + tig0023820:2855-2874 None:intergenic 40.0%
TGGAGACTATCTAGGTGTTA+AGG - tig0023820:2948-2967 Msa1411500:intron 40.0%
GACCAACGTATTCTATCAAG+TGG - tig0023820:3006-3025 Msa1411500:intron 40.0%
CACCACTTGATAGAATACGT+TGG + tig0023820:3011-3030 None:intergenic 40.0%
ATCAAGTGGTGTTCATGTTG+TGG - tig0023820:3020-3039 Msa1411500:intron 40.0%
CAAGATGTTTGTGTTGGATG+AGG - tig0023820:3104-3123 Msa1411500:intron 40.0%
TTCTCGAGGTTTCAAAGATC+AGG - tig0023820:3140-3159 Msa1411500:intron 40.0%
TGGAATGAGGGAAACGGAAA+AGG - tig0023820:447-466 Msa1411500:three_prime_UTR 45.0%
CGCTAGTTGGTCAAACTAAC+TGG + tig0023820:493-512 None:intergenic 45.0%
CAAGCAACAGGGTAAGGTAA+AGG + tig0023820:566-585 None:intergenic 45.0%
CTTTACCTTACCCTGTTGCT+TGG - tig0023820:564-583 Msa1411500:three_prime_UTR 45.0%
GAGTTGAGGGATGAAAACGA+AGG + tig0023820:630-649 None:intergenic 45.0%
CGGAGTTAGTTAACGGAGTT+AGG + tig0023820:685-704 None:intergenic 45.0%
AGCACGAGTAAGGAGTTGTT+TGG + tig0023820:1346-1365 None:intergenic 45.0%
CAACAAGATCAGCACGAGTA+AGG + tig0023820:1356-1375 None:intergenic 45.0%
CAGCTGATGGAGATGAATTC+TGG - tig0023820:1599-1618 Msa1411500:intron 45.0%
CATATGCATAAATGCCCCTG+AGG + tig0023820:1681-1700 None:intergenic 45.0%
!! CTCAGGGGCATTTATGCATA+TGG - tig0023820:1679-1698 Msa1411500:intron 45.0%
! CTTTGGCCTTTACTTACACC+TGG - tig0023820:1740-1759 Msa1411500:intron 45.0%
! CCACAACCTTTTACCGTCTA+AGG + tig0023820:1856-1875 None:intergenic 45.0%
CCTTAGACGGTAAAAGGTTG+TGG - tig0023820:1853-1872 Msa1411500:intron 45.0%
TACCCCAATTCTCTGCACTT+AGG - tig0023820:1914-1933 Msa1411500:intron 45.0%
ACCCCAATTCTCTGCACTTA+GGG - tig0023820:1915-1934 Msa1411500:intron 45.0%
ACCCTAAGTGCAGAGAATTG+GGG + tig0023820:1919-1938 None:intergenic 45.0%
GACCCTAAGTGCAGAGAATT+GGG + tig0023820:1920-1939 None:intergenic 45.0%
AGACCCTAAGTGCAGAGAAT+TGG + tig0023820:1921-1940 None:intergenic 45.0%
GTAAGGTAGCTAGTTAACGG+CGG + tig0023820:2235-2254 None:intergenic 45.0%
AGCCATCTGCTATTCAGCAA+AGG - tig0023820:2740-2759 Msa1411500:intron 45.0%
GCCATCTGCTATTCAGCAAA+GGG - tig0023820:2741-2760 Msa1411500:intron 45.0%
CCATCTGCTATTCAGCAAAG+GGG - tig0023820:2742-2761 Msa1411500:intron 45.0%
CATCTGCTATTCAGCAAAGG+GGG - tig0023820:2743-2762 Msa1411500:intron 45.0%
ACATCAAGTCCCTTGCAGAA+GGG + tig0023820:2775-2794 None:intergenic 45.0%
AACATCAAGTCCCTTGCAGA+AGG + tig0023820:2776-2795 None:intergenic 45.0%
GTTATTCAACAGGCTCAGTC+TGG - tig0023820:2793-2812 Msa1411500:intron 45.0%
!!! GCAGAAAGTTGCTGTTTTCC+CGG + tig0023820:2821-2840 None:intergenic 45.0%
! ACGAGTTGGAGCTAAAACCA+AGG + tig0023820:2890-2909 None:intergenic 45.0%
GTTAAGGTGCATGCTTGTGT+CGG - tig0023820:2964-2983 Msa1411500:intron 45.0%
AGTGGTGTTCATGTTGTGGT+TGG - tig0023820:3024-3043 Msa1411500:intron 45.0%
AGCATATCAAACACACGACC+AGG + tig0023820:3054-3073 None:intergenic 45.0%
GCTGATGAAATGCTTTCTCG+AGG - tig0023820:3126-3145 Msa1411500:intron 45.0%
!! ACCAACTAGCGTTGACTGAG+AGG - tig0023820:502-521 Msa1411500:three_prime_UTR 50.0%
!! CCAACTAGCGTTGACTGAGA+GGG - tig0023820:503-522 Msa1411500:three_prime_UTR 50.0%
!! CAACTAGCGTTGACTGAGAG+GGG - tig0023820:504-523 Msa1411500:three_prime_UTR 50.0%
! GTTTTCATCCCTCAACTCCG+CGG - tig0023820:632-651 Msa1411500:three_prime_UTR 50.0%
! CGTAGATCCGGGGAGTTTTT+GGG - tig0023820:655-674 Msa1411500:three_prime_UTR 50.0%
AGGGTTTCCCAAAAACTCCC+CGG + tig0023820:665-684 None:intergenic 50.0%
! AGCATCGAATTGTGACCCCT+CGG + tig0023820:1431-1450 None:intergenic 50.0%
AGGGGTCACAATTCGATGCT+GGG - tig0023820:1431-1450 Msa1411500:intron 50.0%
TCTCTCAGGATTGCAGCTGA+TGG - tig0023820:1586-1605 Msa1411500:intron 50.0%
!! GCAGAGAATTGGGGTATTGC+AGG + tig0023820:1910-1929 None:intergenic 50.0%
CTCTGCACTTAGGGTCTGTT+TGG - tig0023820:1924-1943 Msa1411500:intron 50.0%
TTAACGGCGGATACGCTAGT+TGG + tig0023820:2222-2241 None:intergenic 50.0%
CCCCTTTGCTGAATAGCAGA+TGG + tig0023820:2745-2764 None:intergenic 50.0%
GGGATAGTTCCCTTCTGCAA+GGG - tig0023820:2763-2782 Msa1411500:intron 50.0%
CTACAATGTGACTCAGTGCC+AGG - tig0023820:2864-2883 Msa1411500:intron 50.0%
TTGGAGCTAAAACCAAGGCC+TGG + tig0023820:2885-2904 None:intergenic 50.0%
GCTTGCTCAGCAGATTGAGA+AGG - tig0023820:2912-2931 Msa1411500:intron 50.0%
! CATGTTGTGGTTGGTACTCC+TGG - tig0023820:3033-3052 Msa1411500:intron 50.0%
! TTTTGACGGGAAGAGCGAAG+AGG - tig0023820:3416-3435 Msa1411500:five_prime_UTR 50.0%
TTTGACGGGAAGAGCGAAGA+GGG - tig0023820:3417-3436 Msa1411500:five_prime_UTR 50.0%
CCCTCTCAGTCAACGCTAGT+TGG + tig0023820:506-525 None:intergenic 55.0%
! GCGTAGATCCGGGGAGTTTT+TGG - tig0023820:654-673 Msa1411500:three_prime_UTR 55.0%
GCATCGAATTGTGACCCCTC+GGG + tig0023820:1430-1449 None:intergenic 55.0%
GAGGGGTCACAATTCGATGC+TGG - tig0023820:1430-1449 Msa1411500:intron 55.0%
GGGGATAGTTCCCTTCTGCA+AGG - tig0023820:2762-2781 Msa1411500:intron 55.0%
! CAACAGGCTCAGTCTGGAAC+CGG - tig0023820:2799-2818 Msa1411500:intron 55.0%
! AACAGGCTCAGTCTGGAACC+GGG - tig0023820:2800-2819 Msa1411500:intron 55.0%
TGCTGAGCAAGCTCACGAGT+TGG + tig0023820:2904-2923 None:intergenic 55.0%
GAGAAGGTTATGCGTGCGCT+TGG - tig0023820:2928-2947 Msa1411500:intron 55.0%
CGTGCGCTTGGAGACTATCT+AGG - tig0023820:2940-2959 Msa1411500:intron 55.0%
AAGGTGCATGCTTGTGTCGG+AGG - tig0023820:2967-2986 Msa1411500:intron 55.0%
! AAGAGCGAAGAGGGCATGGA+GGG - tig0023820:3426-3445 Msa1411500:five_prime_UTR 55.0%
GATCTACGCCGCGGAGTTGA+GGG + tig0023820:643-662 None:intergenic 60.0%
TCAACTCCGCGGCGTAGATC+CGG - tig0023820:643-662 Msa1411500:three_prime_UTR 60.0%
TATGGCTGGACTTGCACCCG+AGG - tig0023820:1411-1430 Msa1411500:intron 60.0%
ATGGCTGGACTTGCACCCGA+GGG - tig0023820:1412-1431 Msa1411500:intron 60.0%
TGTGACTCAGTGCCAGGCCT+TGG - tig0023820:2870-2889 Msa1411500:intron 60.0%
! GAAGAGCGAAGAGGGCATGG+AGG - tig0023820:3425-3444 Msa1411500:five_prime_UTR 60.0%
! AGAGCGAAGAGGGCATGGAG+GGG - tig0023820:3427-3446 Msa1411500:five_prime_UTR 60.0%
! GGGGGGGGCTCACCTATTTT+TGG - tig0023820:3446-3465 Msa1411500:five_prime_UTR 60.0%
GGATCTACGCCGCGGAGTTG+AGG + tig0023820:644-663 None:intergenic 65.0%
CAACTCCGCGGCGTAGATCC+GGG - tig0023820:644-663 Msa1411500:three_prime_UTR 65.0%
AACTCCGCGGCGTAGATCCG+GGG - tig0023820:645-664 Msa1411500:three_prime_UTR 65.0%
AACTCCCCGGATCTACGCCG+CGG + tig0023820:652-671 None:intergenic 65.0%
TGGCTGGACTTGCACCCGAG+GGG - tig0023820:1413-1432 Msa1411500:intron 65.0%
CGGGAAGAGCGAAGAGGGCA+TGG - tig0023820:3422-3441 Msa1411500:five_prime_UTR 65.0%
! GAGCGAAGAGGGCATGGAGG+GGG - tig0023820:3428-3447 Msa1411500:five_prime_UTR 65.0%
! AGCGAAGAGGGCATGGAGGG+GGG - tig0023820:3429-3448 Msa1411500:five_prime_UTR 65.0%
! GCGAAGAGGGCATGGAGGGG+GGG - tig0023820:3430-3449 Msa1411500:five_prime_UTR 70.0%
! CGAAGAGGGCATGGAGGGGG+GGG - tig0023820:3431-3450 Msa1411500:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0023820 gene 409 3473 409 ID=Msa1411500;Name=Msa1411500
tig0023820 mRNA 409 3473 409 ID=Msa1411500-mRNA-1;Parent=Msa1411500;Name=Msa1411500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=326|1|1|1|0.66|0.5|4|294|207
tig0023820 exon 409 1151 409 ID=Msa1411500-mRNA-1:exon:20189;Parent=Msa1411500-mRNA-1
tig0023820 exon 2182 2288 2182 ID=Msa1411500-mRNA-1:exon:20188;Parent=Msa1411500-mRNA-1
tig0023820 exon 2403 2472 2403 ID=Msa1411500-mRNA-1:exon:20187;Parent=Msa1411500-mRNA-1
tig0023820 exon 3150 3473 3150 ID=Msa1411500-mRNA-1:exon:20186;Parent=Msa1411500-mRNA-1
tig0023820 five_prime_UTR 3150 3473 3150 ID=Msa1411500-mRNA-1:five_prime_utr;Parent=Msa1411500-mRNA-1
tig0023820 five_prime_UTR 2471 2472 2471 ID=Msa1411500-mRNA-1:five_prime_utr;Parent=Msa1411500-mRNA-1
tig0023820 CDS 2403 2470 2403 ID=Msa1411500-mRNA-1:cds;Parent=Msa1411500-mRNA-1
tig0023820 CDS 2182 2288 2182 ID=Msa1411500-mRNA-1:cds;Parent=Msa1411500-mRNA-1
tig0023820 CDS 703 1151 703 ID=Msa1411500-mRNA-1:cds;Parent=Msa1411500-mRNA-1
tig0023820 three_prime_UTR 409 702 409 ID=Msa1411500-mRNA-1:three_prime_utr;Parent=Msa1411500-mRNA-1
Gene Sequence

>Msa1411500

ATGGCTGGACTTGCACCCGAGGGGTCACAATTCGATGCTGGGAAATTTGATCAAAAAATGAATGACTTGATTGCAGCTGATGGAGATGAATTCTGGACTTCTTATGATGAGGTTTATGATAGTTTTGATGCTATGGGTTTGTTAGAGAATCTCCTCAGGGGCATTTATGCATATGGTTTTGAAAAGCCATCTGCTATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACCGGGAAAACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGACTACAATGTGACTCAGTGCCAGGCCTTGGTTTTAGCTCCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGTGCGCTTGGAGACTATCTAGGTGTTAAGGTGCATGCTTGTGTCGGAGGTACAAGTGTTCGTGAAGACCAACGTATTCTATCAAGTGGTGTTCATGTTGTGGTTGGTACTCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCTCTTCACCCAGATTACATCAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGGTACCATCTATTTCATAA

Protein sequence

>Msa1411500

MAGLAPEGSQFDAGKFDQKMNDLIAADGDEFWTSYDEVYDSFDAMGLLENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYNVTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLHPDYIKMFVLDEADEMLSRGFKDQVPSIS*