Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388750 | XP_039684366.1 | 98.137 | 161 | 2 | 1 | 104 | 264 | 226 | 385 | 1.54e-112 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388750 | A0A3Q7XM90 | 81.818 | 165 | 29 | 1 | 100 | 264 | 1 | 164 | 5.78e-95 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa1388750 | 0.801921 | 7.165592e-49 | -8.615850e-47 |
| Msa0661190 | Msa1388750 | -0.800828 | 1.199902e-48 | -8.615850e-47 |
| Msa0672690 | Msa1388750 | 0.813681 | 2.263184e-51 | -8.615850e-47 |
| Msa0796700 | Msa1388750 | 0.842349 | 2.729867e-58 | -8.615850e-47 |
| Msa0820850 | Msa1388750 | 0.800880 | 1.171288e-48 | -8.615850e-47 |
| Msa0220580 | Msa1388750 | 0.808961 | 2.394919e-50 | -8.615850e-47 |
| Msa1288420 | Msa1388750 | 0.814109 | 1.821105e-51 | -8.615850e-47 |
| Msa1332040 | Msa1388750 | -0.813369 | 2.651013e-51 | -8.615850e-47 |
| Msa0249560 | Msa1388750 | 0.809236 | 2.090991e-50 | -8.615850e-47 |
| Msa0265380 | Msa1388750 | 0.806911 | 6.534526e-50 | -8.615850e-47 |
| Msa0288100 | Msa1388750 | 0.821351 | 4.228385e-53 | -8.615850e-47 |
| Msa1157930 | Msa1388750 | -0.803312 | 3.702159e-49 | -8.615850e-47 |
| Msa1165540 | Msa1388750 | 0.800038 | 1.738099e-48 | -8.615850e-47 |
| Msa0602390 | Msa1388750 | 0.806811 | 6.862996e-50 | -8.615850e-47 |
| Msa0927290 | Msa1388750 | 0.805088 | 1.580634e-49 | -8.615850e-47 |
| Msa0945970 | Msa1388750 | 0.807705 | 4.436308e-50 | -8.615850e-47 |
| Msa0976670 | Msa1388750 | 0.805424 | 1.343644e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388750 | MtrunA17_Chr6g0477141 | 42.759 | 145 | 83 | 0 | 87 | 231 | 307 | 451 | 6.37e-30 | 117 |
| Msa1388750 | MtrunA17_Chr1g0172731 | 39.759 | 166 | 93 | 2 | 99 | 264 | 247 | 405 | 2.77e-28 | 111 |
| Msa1388750 | MtrunA17_Chr1g0190171 | 39.759 | 166 | 93 | 2 | 99 | 264 | 247 | 405 | 2.95e-28 | 111 |
| Msa1388750 | MtrunA17_Chr6g0478531 | 39.877 | 163 | 87 | 5 | 105 | 259 | 221 | 380 | 2.67e-26 | 105 |
| Msa1388750 | MtrunA17_Chr1g0207391 | 42.623 | 122 | 68 | 1 | 86 | 205 | 250 | 371 | 7.24e-25 | 102 |
| Msa1388750 | MtrunA17_Chr7g0226311 | 48.113 | 106 | 51 | 2 | 103 | 206 | 191 | 294 | 2.85e-24 | 99.8 |
| Msa1388750 | MtrunA17_Chr4g0018411 | 43.810 | 105 | 55 | 2 | 104 | 206 | 9 | 111 | 1.77e-22 | 90.5 |
| Msa1388750 | MtrunA17_Chr8g0391981 | 43.966 | 116 | 59 | 2 | 105 | 220 | 257 | 366 | 4.73e-22 | 94.4 |
| Msa1388750 | MtrunA17_Chr1g0182341 | 36.129 | 155 | 94 | 3 | 105 | 259 | 231 | 380 | 3.73e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388750 | AT5G35695.1 | 39.773 | 176 | 88 | 5 | 92 | 254 | 38 | 208 | 1.72e-30 | 113 |
| Msa1388750 | AT5G41980.1 | 41.121 | 107 | 54 | 1 | 105 | 211 | 219 | 316 | 5.75e-19 | 85.9 |
| Msa1388750 | AT3G30525.1 | 35.075 | 134 | 64 | 4 | 58 | 185 | 42 | 158 | 1.07e-13 | 67.8 |
| Msa1388750 | AT4G10890.3 | 46.269 | 67 | 35 | 1 | 105 | 171 | 95 | 160 | 4.89e-11 | 63.2 |
| Msa1388750 | AT4G10890.1 | 46.269 | 67 | 35 | 1 | 105 | 171 | 95 | 160 | 4.89e-11 | 63.2 |
| Msa1388750 | AT4G10890.2 | 46.269 | 67 | 35 | 1 | 105 | 171 | 95 | 160 | 4.89e-11 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACAGGCACTCGTCTTTA+AGG | 0.151494 | tig0021177:+633 | Msa1388750:CDS |
| TGATATCTTTCACCTCTATA+AGG | 0.258085 | tig0021177:-554 | Msa1388750:intergenic |
| GAAGGCATTAACTTTAAAAT+AGG | 0.275689 | tig0021177:-698 | Msa1388750:intergenic |
| ATGACAATTGAGCGTTGTTT+TGG | 0.285032 | tig0021177:+656 | Msa1388750:CDS |
| TTTGTTGCTGAAGTGTTAAA+TGG | 0.310227 | tig0021177:+272 | Msa1388750:CDS |
| GAAAACTTAACAAGGTTATC+TGG | 0.314955 | tig0021177:+893 | Msa1388750:CDS |
| CTGATGAGTTGTTTAGGATA+TGG | 0.326241 | tig0021177:+798 | Msa1388750:CDS |
| AGATATTAATACTTACCTTT+AGG | 0.326733 | tig0021177:-409 | Msa1388750:intergenic |
| TTATATGCAACAATGGAGTA+TGG | 0.343530 | tig0021177:+1020 | Msa1388750:three_prime_UTR |
| GATATCTTTCACCTCTATAA+GGG | 0.363038 | tig0021177:-553 | Msa1388750:intergenic |
| ATTTGCCTGATGAGTTGTTT+AGG | 0.395717 | tig0021177:+792 | Msa1388750:CDS |
| TCTTTGCCTTGAAGGTTTGT+AGG | 0.399596 | tig0021177:-720 | Msa1388750:intergenic |
| ACTATGAGTCTTTGCCTTGA+AGG | 0.404813 | tig0021177:-728 | Msa1388750:intergenic |
| CATTCGAGCTCATCCCTTCA+AGG | 0.405495 | tig0021177:-868 | Msa1388750:intergenic |
| GAGCTCATCCCTTCAAGGTT+AGG | 0.410036 | tig0021177:-863 | Msa1388750:intergenic |
| TGCCTTCCTACAAACCTTCA+AGG | 0.421938 | tig0021177:+714 | Msa1388750:CDS |
| GTTTAGGATATGGGAAGAAA+TGG | 0.432438 | tig0021177:+808 | Msa1388750:CDS |
| AACGAGGTTCCTAACCTTGA+AGG | 0.452298 | tig0021177:+854 | Msa1388750:CDS |
| CATATCCTAAACAACTCATC+AGG | 0.463497 | tig0021177:-797 | Msa1388750:intergenic |
| TGATGAGTTGTTTAGGATAT+GGG | 0.463980 | tig0021177:+799 | Msa1388750:CDS |
| CGGAAGAGTTATTTAACTAC+AGG | 0.468726 | tig0021177:+618 | Msa1388750:CDS |
| GCTGAAGTGTTAAATGGGTC+TGG | 0.477010 | tig0021177:+278 | Msa1388750:CDS |
| ATAGGAATCATCTTAGAGAT+AGG | 0.479459 | tig0021177:+942 | Msa1388750:CDS |
| CTGTAGTTAAATAACTCTTC+CGG | 0.483501 | tig0021177:-617 | Msa1388750:intergenic |
| GGAAGAAAACCTCCGGTACA+TGG | 0.495583 | tig0021177:-530 | Msa1388750:intergenic |
| ATCATCTTAGAGATAGGATG+TGG | 0.498557 | tig0021177:+948 | Msa1388750:CDS |
| TTGTTGCTGAAGTGTTAAAT+GGG | 0.511600 | tig0021177:+273 | Msa1388750:CDS |
| TGCCTTGAAGGTTTGTAGGA+AGG | 0.520257 | tig0021177:-716 | Msa1388750:intergenic |
| GAAACACTTTGACAAATCAA+AGG | 0.541850 | tig0021177:+220 | Msa1388750:CDS |
| GGATGTGCTTGGCCACCTAA+AGG | 0.542776 | tig0021177:+394 | Msa1388750:CDS |
| TATTAATACTTACCTTTAGG+TGG | 0.556629 | tig0021177:-406 | Msa1388750:intergenic |
| GATTCTGGGTATCCATGTAC+CGG | 0.568240 | tig0021177:+518 | Msa1388750:CDS |
| TGGTGAAGGTGCAGCTGAGA+TGG | 0.570988 | tig0021177:+913 | Msa1388750:CDS |
| AGAACTACTTAAGTGACTCA+AGG | 0.572135 | tig0021177:+372 | Msa1388750:CDS |
| CAGCTGAGATGGCAATGGAT+AGG | 0.572746 | tig0021177:+924 | Msa1388750:CDS |
| GCACAAGAATATCGAGGTCA+AGG | 0.576148 | tig0021177:+578 | Msa1388750:CDS |
| AGTGACTCAAGGGATGTGCT+TGG | 0.578315 | tig0021177:+383 | Msa1388750:CDS |
| CGAATGTTGAAAACTTAACA+AGG | 0.583345 | tig0021177:+885 | Msa1388750:CDS |
| ATATCTTTCACCTCTATAAG+GGG | 0.588145 | tig0021177:-552 | Msa1388750:intergenic |
| AATGGATGATATAGAACTTG+AGG | 0.590391 | tig0021177:+826 | Msa1388750:CDS |
| TTAACAAGGTTATCTGGTGA+AGG | 0.596934 | tig0021177:+899 | Msa1388750:CDS |
| TTCACAATTACATACGCAAG+TGG | 0.598213 | tig0021177:+768 | Msa1388750:CDS |
| ACGAGGTTCCTAACCTTGAA+GGG | 0.611095 | tig0021177:+855 | Msa1388750:CDS |
| AGAACTTGAGGCGGTGAACG+AGG | 0.616035 | tig0021177:+838 | Msa1388750:CDS |
| GAACTACTTAAGTGACTCAA+GGG | 0.624733 | tig0021177:+373 | Msa1388750:CDS |
| TCTGGGTATCCATGTACCGG+AGG | 0.637904 | tig0021177:+521 | Msa1388750:CDS |
| AGGTGCAGCTGAGATGGCAA+TGG | 0.645965 | tig0021177:+919 | Msa1388750:CDS |
| GGATGATATAGAACTTGAGG+CGG | 0.673217 | tig0021177:+829 | Msa1388750:CDS |
| TCATCTTAGAGATAGGATGT+GGG | 0.679475 | tig0021177:+949 | Msa1388750:CDS |
| TATCTTTCACCTCTATAAGG+GGG | 0.684253 | tig0021177:-551 | Msa1388750:intergenic |
| TATCATGCACAAGAATATCG+AGG | 0.707384 | tig0021177:+572 | Msa1388750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATTAATACTTACCTTT+AGG | - | tig0021177:412-431 | Msa1388750:intergenic | 20.0% |
| !!! | ACATGTATTTTATTTGATGA+AGG | + | tig0021177:479-498 | Msa1388750:intron | 20.0% |
| !! | AGATATTAATACTTACCTTT+AGG | - | tig0021177:412-431 | Msa1388750:intergenic | 20.0% |
| !!! | ACATGTATTTTATTTGATGA+AGG | + | tig0021177:479-498 | Msa1388750:intron | 20.0% |
| ! | TATTAATACTTACCTTTAGG+TGG | - | tig0021177:409-428 | Msa1388750:intergenic | 25.0% |
| ! | AAAGTTATGCAGTTATATTG+AGG | + | tig0021177:437-456 | Msa1388750:intron | 25.0% |
| !!! | TCATTTTATCTTGTTGATTC+TGG | + | tig0021177:503-522 | Msa1388750:CDS | 25.0% |
| !!! | CATTTTATCTTGTTGATTCT+GGG | + | tig0021177:504-523 | Msa1388750:CDS | 25.0% |
| !!! | GAAGGCATTAACTTTAAAAT+AGG | - | tig0021177:701-720 | Msa1388750:intergenic | 25.0% |
| !! | GATTTTCTTATATGCAACAA+TGG | + | tig0021177:1013-1032 | Msa1388750:three_prime_UTR | 25.0% |
| !!! | GAGTTTTGTTAGTTATTTTG+TGG | + | tig0021177:1042-1061 | Msa1388750:three_prime_UTR | 25.0% |
| ! | TATTAATACTTACCTTTAGG+TGG | - | tig0021177:409-428 | Msa1388750:intergenic | 25.0% |
| ! | AAAGTTATGCAGTTATATTG+AGG | + | tig0021177:437-456 | Msa1388750:intron | 25.0% |
| !!! | TCATTTTATCTTGTTGATTC+TGG | + | tig0021177:503-522 | Msa1388750:CDS | 25.0% |
| !!! | CATTTTATCTTGTTGATTCT+GGG | + | tig0021177:504-523 | Msa1388750:CDS | 25.0% |
| !!! | GAAGGCATTAACTTTAAAAT+AGG | - | tig0021177:701-720 | Msa1388750:intergenic | 25.0% |
| !! | GATTTTCTTATATGCAACAA+TGG | + | tig0021177:1013-1032 | Msa1388750:three_prime_UTR | 25.0% |
| !!! | GAGTTTTGTTAGTTATTTTG+TGG | + | tig0021177:1042-1061 | Msa1388750:three_prime_UTR | 25.0% |
| !! | TGCAAGTGATGATGAATTTT+TGG | + | tig0021177:160-179 | Msa1388750:CDS | 30.0% |
| GAAACACTTTGACAAATCAA+AGG | + | tig0021177:220-239 | Msa1388750:CDS | 30.0% | |
| ! | TTTGTTGCTGAAGTGTTAAA+TGG | + | tig0021177:272-291 | Msa1388750:CDS | 30.0% |
| ! | TTGTTGCTGAAGTGTTAAAT+GGG | + | tig0021177:273-292 | Msa1388750:CDS | 30.0% |
| ATATCTTTCACCTCTATAAG+GGG | - | tig0021177:555-574 | Msa1388750:intergenic | 30.0% | |
| GATATCTTTCACCTCTATAA+GGG | - | tig0021177:556-575 | Msa1388750:intergenic | 30.0% | |
| TGATATCTTTCACCTCTATA+AGG | - | tig0021177:557-576 | Msa1388750:intergenic | 30.0% | |
| CTGTAGTTAAATAACTCTTC+CGG | - | tig0021177:620-639 | Msa1388750:intergenic | 30.0% | |
| ! | TGATGAGTTGTTTAGGATAT+GGG | + | tig0021177:799-818 | Msa1388750:CDS | 30.0% |
| AATGGATGATATAGAACTTG+AGG | + | tig0021177:826-845 | Msa1388750:CDS | 30.0% | |
| CGAATGTTGAAAACTTAACA+AGG | + | tig0021177:885-904 | Msa1388750:CDS | 30.0% | |
| GAAAACTTAACAAGGTTATC+TGG | + | tig0021177:893-912 | Msa1388750:CDS | 30.0% | |
| ATAGGAATCATCTTAGAGAT+AGG | + | tig0021177:942-961 | Msa1388750:CDS | 30.0% | |
| TTATATGCAACAATGGAGTA+TGG | + | tig0021177:1020-1039 | Msa1388750:three_prime_UTR | 30.0% | |
| !! | TGCAAGTGATGATGAATTTT+TGG | + | tig0021177:160-179 | Msa1388750:CDS | 30.0% |
| GAAACACTTTGACAAATCAA+AGG | + | tig0021177:220-239 | Msa1388750:CDS | 30.0% | |
| ! | TTTGTTGCTGAAGTGTTAAA+TGG | + | tig0021177:272-291 | Msa1388750:CDS | 30.0% |
| ! | TTGTTGCTGAAGTGTTAAAT+GGG | + | tig0021177:273-292 | Msa1388750:CDS | 30.0% |
| ATATCTTTCACCTCTATAAG+GGG | - | tig0021177:555-574 | Msa1388750:intergenic | 30.0% | |
| GATATCTTTCACCTCTATAA+GGG | - | tig0021177:556-575 | Msa1388750:intergenic | 30.0% | |
| TGATATCTTTCACCTCTATA+AGG | - | tig0021177:557-576 | Msa1388750:intergenic | 30.0% | |
| CTGTAGTTAAATAACTCTTC+CGG | - | tig0021177:620-639 | Msa1388750:intergenic | 30.0% | |
| ! | TGATGAGTTGTTTAGGATAT+GGG | + | tig0021177:799-818 | Msa1388750:CDS | 30.0% |
| AATGGATGATATAGAACTTG+AGG | + | tig0021177:826-845 | Msa1388750:CDS | 30.0% | |
| CGAATGTTGAAAACTTAACA+AGG | + | tig0021177:885-904 | Msa1388750:CDS | 30.0% | |
| GAAAACTTAACAAGGTTATC+TGG | + | tig0021177:893-912 | Msa1388750:CDS | 30.0% | |
| ATAGGAATCATCTTAGAGAT+AGG | + | tig0021177:942-961 | Msa1388750:CDS | 30.0% | |
| TTATATGCAACAATGGAGTA+TGG | + | tig0021177:1020-1039 | Msa1388750:three_prime_UTR | 30.0% | |
| !! | GTTTTGACATCTTCATTGTC+TGG | + | tig0021177:242-261 | Msa1388750:CDS | 35.0% |
| AGAACTACTTAAGTGACTCA+AGG | + | tig0021177:372-391 | Msa1388750:CDS | 35.0% | |
| GAACTACTTAAGTGACTCAA+GGG | + | tig0021177:373-392 | Msa1388750:CDS | 35.0% | |
| TATCTTTCACCTCTATAAGG+GGG | - | tig0021177:554-573 | Msa1388750:intergenic | 35.0% | |
| TATCATGCACAAGAATATCG+AGG | + | tig0021177:572-591 | Msa1388750:CDS | 35.0% | |
| ! | AATAACTCTTCCGGACTTTT+TGG | - | tig0021177:611-630 | Msa1388750:intergenic | 35.0% |
| CGGAAGAGTTATTTAACTAC+AGG | + | tig0021177:618-637 | Msa1388750:CDS | 35.0% | |
| !! | ATGACAATTGAGCGTTGTTT+TGG | + | tig0021177:656-675 | Msa1388750:CDS | 35.0% |
| !! | TGACAATTGAGCGTTGTTTT+GGG | + | tig0021177:657-676 | Msa1388750:CDS | 35.0% |
| TTCACAATTACATACGCAAG+TGG | + | tig0021177:768-787 | Msa1388750:CDS | 35.0% | |
| ATTTGCCTGATGAGTTGTTT+AGG | + | tig0021177:792-811 | Msa1388750:CDS | 35.0% | |
| CATATCCTAAACAACTCATC+AGG | - | tig0021177:800-819 | Msa1388750:intergenic | 35.0% | |
| ! | CTGATGAGTTGTTTAGGATA+TGG | + | tig0021177:798-817 | Msa1388750:CDS | 35.0% |
| ! | GTTTAGGATATGGGAAGAAA+TGG | + | tig0021177:808-827 | Msa1388750:CDS | 35.0% |
| TTAACAAGGTTATCTGGTGA+AGG | + | tig0021177:899-918 | Msa1388750:CDS | 35.0% | |
| ATCATCTTAGAGATAGGATG+TGG | + | tig0021177:948-967 | Msa1388750:CDS | 35.0% | |
| TCATCTTAGAGATAGGATGT+GGG | + | tig0021177:949-968 | Msa1388750:CDS | 35.0% | |
| !! | GTTTTGACATCTTCATTGTC+TGG | + | tig0021177:242-261 | Msa1388750:CDS | 35.0% |
| AGAACTACTTAAGTGACTCA+AGG | + | tig0021177:372-391 | Msa1388750:CDS | 35.0% | |
| GAACTACTTAAGTGACTCAA+GGG | + | tig0021177:373-392 | Msa1388750:CDS | 35.0% | |
| TATCTTTCACCTCTATAAGG+GGG | - | tig0021177:554-573 | Msa1388750:intergenic | 35.0% | |
| TATCATGCACAAGAATATCG+AGG | + | tig0021177:572-591 | Msa1388750:CDS | 35.0% | |
| ! | AATAACTCTTCCGGACTTTT+TGG | - | tig0021177:611-630 | Msa1388750:intergenic | 35.0% |
| CGGAAGAGTTATTTAACTAC+AGG | + | tig0021177:618-637 | Msa1388750:CDS | 35.0% | |
| !! | ATGACAATTGAGCGTTGTTT+TGG | + | tig0021177:656-675 | Msa1388750:CDS | 35.0% |
| !! | TGACAATTGAGCGTTGTTTT+GGG | + | tig0021177:657-676 | Msa1388750:CDS | 35.0% |
| TTCACAATTACATACGCAAG+TGG | + | tig0021177:768-787 | Msa1388750:CDS | 35.0% | |
| ATTTGCCTGATGAGTTGTTT+AGG | + | tig0021177:792-811 | Msa1388750:CDS | 35.0% | |
| CATATCCTAAACAACTCATC+AGG | - | tig0021177:800-819 | Msa1388750:intergenic | 35.0% | |
| ! | CTGATGAGTTGTTTAGGATA+TGG | + | tig0021177:798-817 | Msa1388750:CDS | 35.0% |
| ! | GTTTAGGATATGGGAAGAAA+TGG | + | tig0021177:808-827 | Msa1388750:CDS | 35.0% |
| TTAACAAGGTTATCTGGTGA+AGG | + | tig0021177:899-918 | Msa1388750:CDS | 35.0% | |
| ATCATCTTAGAGATAGGATG+TGG | + | tig0021177:948-967 | Msa1388750:CDS | 35.0% | |
| TCATCTTAGAGATAGGATGT+GGG | + | tig0021177:949-968 | Msa1388750:CDS | 35.0% | |
| AGGTAGACAACCAAAAAGTC+CGG | + | tig0021177:598-617 | Msa1388750:CDS | 40.0% | |
| !! | GACAATTGAGCGTTGTTTTG+GGG | + | tig0021177:658-677 | Msa1388750:CDS | 40.0% |
| !!! | GTTTTGGGGTGTTGAAAAAC+AGG | + | tig0021177:672-691 | Msa1388750:CDS | 40.0% |
| TCTTTGCCTTGAAGGTTTGT+AGG | - | tig0021177:723-742 | Msa1388750:intergenic | 40.0% | |
| ACTATGAGTCTTTGCCTTGA+AGG | - | tig0021177:731-750 | Msa1388750:intergenic | 40.0% | |
| GGATGATATAGAACTTGAGG+CGG | + | tig0021177:829-848 | Msa1388750:CDS | 40.0% | |
| AGGTAGACAACCAAAAAGTC+CGG | + | tig0021177:598-617 | Msa1388750:CDS | 40.0% | |
| !! | GACAATTGAGCGTTGTTTTG+GGG | + | tig0021177:658-677 | Msa1388750:CDS | 40.0% |
| !!! | GTTTTGGGGTGTTGAAAAAC+AGG | + | tig0021177:672-691 | Msa1388750:CDS | 40.0% |
| TCTTTGCCTTGAAGGTTTGT+AGG | - | tig0021177:723-742 | Msa1388750:intergenic | 40.0% | |
| ACTATGAGTCTTTGCCTTGA+AGG | - | tig0021177:731-750 | Msa1388750:intergenic | 40.0% | |
| GGATGATATAGAACTTGAGG+CGG | + | tig0021177:829-848 | Msa1388750:CDS | 40.0% | |
| ! | GCTGAAGTGTTAAATGGGTC+TGG | + | tig0021177:278-297 | Msa1388750:CDS | 45.0% |
| GATTCTGGGTATCCATGTAC+CGG | + | tig0021177:518-537 | Msa1388750:CDS | 45.0% | |
| ATAAGGGGGAAGAAAACCTC+CGG | - | tig0021177:540-559 | Msa1388750:intergenic | 45.0% | |
| ! | GGTTTTCTTCCCCCTTATAG+AGG | + | tig0021177:542-561 | Msa1388750:CDS | 45.0% |
| GCACAAGAATATCGAGGTCA+AGG | + | tig0021177:578-597 | Msa1388750:CDS | 45.0% | |
| ACTACAGGCACTCGTCTTTA+AGG | + | tig0021177:633-652 | Msa1388750:CDS | 45.0% | |
| TGCCTTCCTACAAACCTTCA+AGG | + | tig0021177:714-733 | Msa1388750:CDS | 45.0% | |
| TGCCTTGAAGGTTTGTAGGA+AGG | - | tig0021177:719-738 | Msa1388750:intergenic | 45.0% | |
| AACGAGGTTCCTAACCTTGA+AGG | + | tig0021177:854-873 | Msa1388750:CDS | 45.0% | |
| ACGAGGTTCCTAACCTTGAA+GGG | + | tig0021177:855-874 | Msa1388750:CDS | 45.0% | |
| ! | GCTGAAGTGTTAAATGGGTC+TGG | + | tig0021177:278-297 | Msa1388750:CDS | 45.0% |
| GATTCTGGGTATCCATGTAC+CGG | + | tig0021177:518-537 | Msa1388750:CDS | 45.0% | |
| ATAAGGGGGAAGAAAACCTC+CGG | - | tig0021177:540-559 | Msa1388750:intergenic | 45.0% | |
| ! | GGTTTTCTTCCCCCTTATAG+AGG | + | tig0021177:542-561 | Msa1388750:CDS | 45.0% |
| GCACAAGAATATCGAGGTCA+AGG | + | tig0021177:578-597 | Msa1388750:CDS | 45.0% | |
| ACTACAGGCACTCGTCTTTA+AGG | + | tig0021177:633-652 | Msa1388750:CDS | 45.0% | |
| TGCCTTCCTACAAACCTTCA+AGG | + | tig0021177:714-733 | Msa1388750:CDS | 45.0% | |
| TGCCTTGAAGGTTTGTAGGA+AGG | - | tig0021177:719-738 | Msa1388750:intergenic | 45.0% | |
| AACGAGGTTCCTAACCTTGA+AGG | + | tig0021177:854-873 | Msa1388750:CDS | 45.0% | |
| ACGAGGTTCCTAACCTTGAA+GGG | + | tig0021177:855-874 | Msa1388750:CDS | 45.0% | |
| AGTGACTCAAGGGATGTGCT+TGG | + | tig0021177:383-402 | Msa1388750:CDS | 50.0% | |
| GGAAGAAAACCTCCGGTACA+TGG | - | tig0021177:533-552 | Msa1388750:intergenic | 50.0% | |
| GAGCTCATCCCTTCAAGGTT+AGG | - | tig0021177:866-885 | Msa1388750:intergenic | 50.0% | |
| CATTCGAGCTCATCCCTTCA+AGG | - | tig0021177:871-890 | Msa1388750:intergenic | 50.0% | |
| CAGCTGAGATGGCAATGGAT+AGG | + | tig0021177:924-943 | Msa1388750:CDS | 50.0% | |
| AGTGACTCAAGGGATGTGCT+TGG | + | tig0021177:383-402 | Msa1388750:CDS | 50.0% | |
| GGAAGAAAACCTCCGGTACA+TGG | - | tig0021177:533-552 | Msa1388750:intergenic | 50.0% | |
| GAGCTCATCCCTTCAAGGTT+AGG | - | tig0021177:866-885 | Msa1388750:intergenic | 50.0% | |
| CATTCGAGCTCATCCCTTCA+AGG | - | tig0021177:871-890 | Msa1388750:intergenic | 50.0% | |
| CAGCTGAGATGGCAATGGAT+AGG | + | tig0021177:924-943 | Msa1388750:CDS | 50.0% | |
| GGATGTGCTTGGCCACCTAA+AGG | + | tig0021177:394-413 | Msa1388750:CDS | 55.0% | |
| TCTGGGTATCCATGTACCGG+AGG | + | tig0021177:521-540 | Msa1388750:CDS | 55.0% | |
| AGAACTTGAGGCGGTGAACG+AGG | + | tig0021177:838-857 | Msa1388750:CDS | 55.0% | |
| ! | TGGTGAAGGTGCAGCTGAGA+TGG | + | tig0021177:913-932 | Msa1388750:CDS | 55.0% |
| AGGTGCAGCTGAGATGGCAA+TGG | + | tig0021177:919-938 | Msa1388750:CDS | 55.0% | |
| GGATGTGCTTGGCCACCTAA+AGG | + | tig0021177:394-413 | Msa1388750:CDS | 55.0% | |
| TCTGGGTATCCATGTACCGG+AGG | + | tig0021177:521-540 | Msa1388750:CDS | 55.0% | |
| AGAACTTGAGGCGGTGAACG+AGG | + | tig0021177:838-857 | Msa1388750:CDS | 55.0% | |
| ! | TGGTGAAGGTGCAGCTGAGA+TGG | + | tig0021177:913-932 | Msa1388750:CDS | 55.0% |
| AGGTGCAGCTGAGATGGCAA+TGG | + | tig0021177:919-938 | Msa1388750:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021177 | gene | 113 | 1159 | 113 | ID=Msa1388750;Name=Msa1388750 |
| tig0021177 | mRNA | 113 | 1159 | 113 | ID=Msa1388750-mRNA-1;Parent=Msa1388750;Name=Msa1388750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0.5|1|1|1|2|171|264 |
| tig0021177 | exon | 113 | 419 | 113 | ID=Msa1388750-mRNA-1:exon:11296;Parent=Msa1388750-mRNA-1 |
| tig0021177 | exon | 501 | 1159 | 501 | ID=Msa1388750-mRNA-1:exon:11297;Parent=Msa1388750-mRNA-1 |
| tig0021177 | CDS | 113 | 419 | 113 | ID=Msa1388750-mRNA-1:cds;Parent=Msa1388750-mRNA-1 |
| tig0021177 | CDS | 501 | 988 | 501 | ID=Msa1388750-mRNA-1:cds;Parent=Msa1388750-mRNA-1 |
| tig0021177 | three_prime_UTR | 989 | 1159 | 989 | ID=Msa1388750-mRNA-1:three_prime_utr;Parent=Msa1388750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
