AlfalfaGEDB | Msa0249560

M. sativa cultivar zhongmu-4 / Msa0249560

KEGG: -
GO: GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051
PFAM: PF13639.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249560	XP_013464052.1	98.413	189	3	0	1	189	1	189	3.03e-135	386

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249560	sp\|Q852U6\|RHY1A_ARATH	62.000	50	19	0	137	186	198	247	1.46e-15	75.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249560	A0A072V8C4	98.413	189	3	0	1	189	1	189	1.45e-135	386

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0249560	-0.821330	4.277003e-53	-8.615850e-47
Msa0002230	Msa0249560	0.803440	3.482886e-49	-8.615850e-47
Msa0011170	Msa0249560	0.812522	4.063733e-51	-8.615850e-47
Msa0014710	Msa0249560	0.822894	1.855134e-53	-8.615850e-47
Msa0029850	Msa0249560	0.834514	2.867834e-56	-8.615850e-47
Msa0033440	Msa0249560	0.809312	2.013736e-50	-8.615850e-47
Msa0036140	Msa0249560	0.806901	6.566112e-50	-8.615850e-47
Msa0036920	Msa0249560	0.823523	1.323402e-53	-8.615850e-47
Msa0037880	Msa0249560	0.816281	5.996713e-52	-8.615850e-47
Msa0039330	Msa0249560	0.824750	6.814401e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249560	MtrunA17_Chr2g0305161	98.413	189	3	0	1	189	1	189	2.79e-139	386
Msa0249560	MtrunA17_Chr4g0065191	46.809	94	40	2	4	97	1	84	2.58e-16	70.9
Msa0249560	MtrunA17_Chr1g0207561	58.333	48	20	0	140	187	198	245	1.83e-14	69.3
Msa0249560	MtrunA17_Chr3g0121201	41.429	70	40	1	117	186	213	281	1.14e-13	68.2
Msa0249560	MtrunA17_Chr1g0169651	55.319	47	21	0	140	186	681	727	8.27e-13	66.2
Msa0249560	MtrunA17_Chr3g0112041	50.000	50	24	1	135	183	205	254	4.81e-12	63.2
Msa0249560	MtrunA17_Chr6g0451051	51.923	52	24	1	136	186	60	111	5.58e-12	60.8
Msa0249560	MtrunA17_Chr1g0150571	44.898	49	27	0	135	183	226	274	5.11e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249560	AT2G15580.1	47.264	201	84	6	1	186	1	194	3.23e-51	163
Msa0249560	AT1G49850.1	62.000	50	19	0	137	186	198	247	1.49e-16	75.5
Msa0249560	AT2G15580.3	47.000	100	34	4	1	86	1	95	6.40e-16	70.5
Msa0249560	AT2G15580.2	47.000	100	34	4	1	86	1	95	8.21e-16	70.9
Msa0249560	AT1G55530.1	28.962	183	95	5	9	183	109	264	2.48e-13	67.4
Msa0249560	AT1G55530.2	28.962	183	95	5	9	183	109	264	2.48e-13	67.4
Msa0249560	AT1G04790.1	50.000	48	24	0	139	186	586	633	5.58e-13	67.0
Msa0249560	AT1G55530.3	55.102	49	22	0	135	183	183	231	1.72e-12	65.1
Msa0249560	AT3G13430.4	59.524	42	17	0	142	183	225	266	5.70e-12	63.5
Msa0249560	AT3G13430.3	59.524	42	17	0	142	183	225	266	5.70e-12	63.5

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Find 59 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCAGGAATGCTTCC+AGG	0.421917	2_2:+36430338	Msa0249560:exon
AAAGCATTATTATCTAAAAC+AGG	0.453933	2_2:+36430251	Msa0249560:five_prime_UTR
AAAGGGTATCAGAAAACATA+AGG	0.481341	2_2:+36430724	Msa0249560:CDS
AAATGAAAAGCTTGTTTAGG+TGG	0.493240	2_2:-36430149	None:intergenic
AAATTTGTTGTAGACTTTGT+TGG	0.406680	2_2:+36431273	Msa0249560:three_prime_UTR
AACTTGTGTGCACAAGGTAA+AGG	0.529312	2_2:-36431146	None:intergenic
AAGAAATGAAAAGCTTGTTT+AGG	0.331374	2_2:-36430152	None:intergenic
AAGAACATGAAGTGTGTGGA+AGG	0.571227	2_2:+36430966	Msa0249560:CDS
AAGGCTTCAAGCATGTGGAA+TGG	0.593453	2_2:-36431169	None:intergenic
AATGAAAAGCTTGTTTAGGT+GGG	0.491071	2_2:-36430148	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTTATGAGAAGAAAAAGA+TGG	-	chr2_2:36430419-36430438	None:intergenic	30.0%
TATTTCCTCATCATCTTCAA+TGG	+	chr2_2:36430487-36430506	Msa0249560:CDS	30.0%
TTTGTCATCCAATCTTTGTT+TGG	-	chr2_2:36430694-36430713	None:intergenic	30.0%
ATGACAAATTCAGATCACAA+AGG	+	chr2_2:36430706-36430725	Msa0249560:CDS	30.0%
TGACAAATTCAGATCACAAA+GGG	+	chr2_2:36430707-36430726	Msa0249560:CDS	30.0%
AGTTACAAACTGAGGTATAT+GGG	+	chr2_2:36431009-36431028	Msa0249560:CDS	30.0%
GAAAATCTAAAGGGAAAGAA+TGG	-	chr2_2:36431234-36431253	None:intergenic	30.0%
GTGTTATGAGAAGAAAAAGA+TGG	-	chr2_2:36430419-36430438	None:intergenic	30.0%
TATTTCCTCATCATCTTCAA+TGG	+	chr2_2:36430487-36430506	Msa0249560:CDS	30.0%
TTTGTCATCCAATCTTTGTT+TGG	-	chr2_2:36430694-36430713	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	36430030	36431317	36430030	ID=Msa0249560;Name=Msa0249560
chr2_2	mRNA	36430030	36431317	36430030	ID=Msa0249560-mRNA-1;Parent=Msa0249560;Name=Msa0249560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=311\|1\|1\|1\|1\|1\|3\|70\|189
chr2_2	exon	36430030	36430508	36430030	ID=Msa0249560-mRNA-1:exon:11676;Parent=Msa0249560-mRNA-1
chr2_2	exon	36430630	36430745	36430630	ID=Msa0249560-mRNA-1:exon:11677;Parent=Msa0249560-mRNA-1
chr2_2	exon	36430962	36431317	36430962	ID=Msa0249560-mRNA-1:exon:11678;Parent=Msa0249560-mRNA-1
chr2_2	five_prime_UTR	36430030	36430340	36430030	ID=Msa0249560-mRNA-1:five_prime_utr;Parent=Msa0249560-mRNA-1
chr2_2	CDS	36430341	36430508	36430341	ID=Msa0249560-mRNA-1:cds;Parent=Msa0249560-mRNA-1
chr2_2	CDS	36430630	36430745	36430630	ID=Msa0249560-mRNA-1:cds;Parent=Msa0249560-mRNA-1
chr2_2	CDS	36430962	36431247	36430962	ID=Msa0249560-mRNA-1:cds;Parent=Msa0249560-mRNA-1
chr2_2	three_prime_UTR	36431248	36431317	36431248	ID=Msa0249560-mRNA-1:three_prime_utr;Parent=Msa0249560-mRNA-1

Gene Sequence

>Msa0249560

ATGGCAGGAATGCTTCCAGGAGTTGAATCAGCTAGAAGAAGACGTGTCCATAAGTCTGGAGGATTTTCTGATTCACCATCTTTTTCTTCTCATAACACCTCAAGACGCTCTTCTTTTTGTTTGTATGCAAGTAACCATGAATCTCGTATTTCCTCATCATCTTCAATGCAAAGAAATATATTATACCAGTCACACCAAGATGAGAATATGGTAGGAGCAGCTAGAGCAGCCAAACAAAGATTGGATGACAAATTCAGATCACAAAGGGTATCAGAAAACATAAGGAAAAAGAACATGAAGTGTGTGGAAGGTAGAAACGAAAGCATAGAAGAGTTACAAACTGAGGTATATGGGACAAAGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCATCGGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGACAAATTGATTCCTTTACCTTGTGCACACAAGTTCCATTCCACATGCTTGAAGCCTTGGTTAGAAAATAATTCACACTGTCCATGTTGTAGAACTACCATTCTTTCCCTTTAG

Protein sequence

>Msa0249560

MAGMLPGVESARRRRVHKSGGFSDSPSFSSHNTSRRSSFCLYASNHESRISSSSSMQRNILYQSHQDENMVGAARAAKQRLDDKFRSQRVSENIRKKNMKCVEGRNESIEELQTEVYGTKKSGPRKFSWSKLSWKASEQEDCAVCLESFKIGDKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILSL*