AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249560 MtrunA17_Chr2g0305161 98.413 189 3 0 1 189 1 189 2.79e-139 386
Msa0249560 MtrunA17_Chr4g0065191 46.809 94 40 2 4 97 1 84 2.58e-16 70.9
Msa0249560 MtrunA17_Chr1g0207561 58.333 48 20 0 140 187 198 245 1.83e-14 69.3
Msa0249560 MtrunA17_Chr3g0121201 41.429 70 40 1 117 186 213 281 1.14e-13 68.2
Msa0249560 MtrunA17_Chr1g0169651 55.319 47 21 0 140 186 681 727 8.27e-13 66.2
Msa0249560 MtrunA17_Chr3g0112041 50.000 50 24 1 135 183 205 254 4.81e-12 63.2
Msa0249560 MtrunA17_Chr6g0451051 51.923 52 24 1 136 186 60 111 5.58e-12 60.8
Msa0249560 MtrunA17_Chr1g0150571 44.898 49 27 0 135 183 226 274 5.11e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249560 AT2G15580.1 47.264 201 84 6 1 186 1 194 3.23e-51 163
Msa0249560 AT1G49850.1 62.000 50 19 0 137 186 198 247 1.49e-16 75.5
Msa0249560 AT2G15580.3 47.000 100 34 4 1 86 1 95 6.40e-16 70.5
Msa0249560 AT2G15580.2 47.000 100 34 4 1 86 1 95 8.21e-16 70.9
Msa0249560 AT1G55530.1 28.962 183 95 5 9 183 109 264 2.48e-13 67.4
Msa0249560 AT1G55530.2 28.962 183 95 5 9 183 109 264 2.48e-13 67.4
Msa0249560 AT1G04790.1 50.000 48 24 0 139 186 586 633 5.58e-13 67.0
Msa0249560 AT1G55530.3 55.102 49 22 0 135 183 183 231 1.72e-12 65.1
Msa0249560 AT3G13430.4 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0249560 AT3G13430.3 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0249560 AT3G13430.1 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0249560 AT3G13430.2 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0249560 AT1G68070.1 50.000 50 25 0 138 187 288 337 5.95e-12 63.5
Msa0249560 AT5G20910.1 48.980 49 25 0 135 183 223 271 1.15e-11 62.4
Msa0249560 AT1G74620.1 32.530 83 51 2 109 186 146 228 2.45e-11 61.2
Msa0249560 AT5G08139.1 52.381 42 20 0 142 183 309 350 7.18e-11 60.5

Find 59 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACCTCTTATATTTATT+TGG 0.165927 2_2:+36430083 Msa0249560:five_prime_UTR
TGGAAGCATTCCTGCCATTT+TGG 0.188105 2_2:-36430336 None:intergenic
TATAAGAGGTATTCCTTAAT+AGG 0.257955 2_2:-36430074 None:intergenic
ACAACAAATTTAGACAATTA+AGG 0.274164 2_2:-36431261 None:intergenic
CAGAAAATCCTCCAGACTTA+TGG 0.295617 2_2:-36430388 None:intergenic
GTCCACCGACTCACCTATTA+AGG 0.310277 2_2:+36430061 Msa0249560:five_prime_UTR
GAGTTACAAACTGAGGTATA+TGG 0.311218 2_2:+36431008 Msa0249560:CDS
AAGAAATGAAAAGCTTGTTT+AGG 0.331374 2_2:-36430152 None:intergenic
TTTGTCATCCAATCTTTGTT+TGG 0.351023 2_2:-36430691 None:intergenic
CTCCTACCATATTCTCATCT+TGG 0.373947 2_2:-36430656 None:intergenic
GTCACACCAAGATGAGAATA+TGG 0.386289 2_2:+36430650 Msa0249560:CDS
TTGCTCCAACTGAACTTCCT+TGG 0.389745 2_2:-36431047 None:intergenic
ATTCCACATGCTTGAAGCCT+TGG 0.391055 2_2:+36431171 Msa0249560:CDS
TGAATGATTAGAACTGCTTT+TGG 0.405186 2_2:-36430215 None:intergenic
AAATTTGTTGTAGACTTTGT+TGG 0.406680 2_2:+36431273 Msa0249560:three_prime_UTR
CTTCTAGCTGATTCAACTCC+TGG 0.409347 2_2:-36430356 None:intergenic
TATTTCCTCATCATCTTCAA+TGG 0.411710 2_2:+36430487 Msa0249560:CDS
AGAGGATTGTGCTGTGTGTT+TGG 0.420957 2_2:+36431094 Msa0249560:CDS
AAAATGGCAGGAATGCTTCC+AGG 0.421917 2_2:+36430338 Msa0249560:exon
CCTCTTATATTTATTTGGTT+AGG 0.421945 2_2:+36430088 Msa0249560:five_prime_UTR
AGGAAATAGTGAAAATCTAA+AGG 0.434746 2_2:-36431241 None:intergenic
AGAAGACGTGTCCATAAGTC+TGG 0.443956 2_2:+36430377 Msa0249560:CDS
GTGGACAGAATTAGACCATA+TGG 0.444773 2_2:-36430044 None:intergenic
AAAGCATTATTATCTAAAAC+AGG 0.453933 2_2:+36430251 Msa0249560:five_prime_UTR
GGAAATAGTGAAAATCTAAA+GGG 0.456814 2_2:-36431240 None:intergenic
CCTAACCAAATAAATATAAG+AGG 0.459168 2_2:-36430088 None:intergenic
TATTCTCATCTTGGTGTGAC+TGG 0.474654 2_2:-36430647 None:intergenic
TGTTTGGAATCATTTAAGAT+TGG 0.475277 2_2:+36431110 Msa0249560:CDS
ATGAGGAAATACGAGATTCA+TGG 0.479758 2_2:-36430475 None:intergenic
AAAGGGTATCAGAAAACATA+AGG 0.481341 2_2:+36430724 Msa0249560:CDS
GAAAATCTTTAAAACCCATA+TGG 0.482018 2_2:+36430029 None:intergenic
TAGAGCAGCCAAACAAAGAT+TGG 0.490480 2_2:+36430683 Msa0249560:CDS
AATGAAAAGCTTGTTTAGGT+GGG 0.491071 2_2:-36430148 None:intergenic
GAAAATCTAAAGGGAAAGAA+TGG 0.491291 2_2:-36431231 None:intergenic
AAATGAAAAGCTTGTTTAGG+TGG 0.493240 2_2:-36430149 None:intergenic
AGTTACAAACTGAGGTATAT+GGG 0.503707 2_2:+36431009 Msa0249560:CDS
TCAGTTGGAGCAAATTGAGC+TGG 0.509816 2_2:+36431057 Msa0249560:CDS
AACTTGTGTGCACAAGGTAA+AGG 0.529312 2_2:-36431146 None:intergenic
TGGACAGAATTAGACCATAT+GGG 0.533969 2_2:-36430043 None:intergenic
GTGGTCCAAGGAAGTTCAGT+TGG 0.539114 2_2:+36431042 Msa0249560:CDS
TGACAAATTCAGATCACAAA+GGG 0.548128 2_2:+36430707 Msa0249560:CDS
ATAATGCTTTGGTGACTGAC+AGG 0.548888 2_2:-36430238 None:intergenic
TAACCAAGGCTTCAAGCATG+TGG 0.558920 2_2:-36431174 None:intergenic
AAGAACATGAAGTGTGTGGA+AGG 0.571227 2_2:+36430966 Msa0249560:CDS
CAAATTGAGCTGGAAAGCAT+CGG 0.579936 2_2:+36431067 Msa0249560:CDS
CTGGAAAGCATCGGAACAAG+AGG 0.580805 2_2:+36431076 Msa0249560:CDS
ACAAACCATTGAAGATGATG+AGG 0.590614 2_2:-36430492 None:intergenic
AAGGCTTCAAGCATGTGGAA+TGG 0.593453 2_2:-36431169 None:intergenic
GGACAAAGAAAAGTGGTCCA+AGG 0.620165 2_2:+36431030 Msa0249560:CDS
TTCCTTAATAGGTGAGTCGG+TGG 0.622438 2_2:-36430063 None:intergenic
GTATTCCTTAATAGGTGAGT+CGG 0.624545 2_2:-36430066 None:intergenic
GTATATGGGACAAAGAAAAG+TGG 0.626148 2_2:+36431023 Msa0249560:CDS
GAATGGAACTTGTGTGCACA+AGG 0.639361 2_2:-36431152 None:intergenic
CATAGAAGAGTTACAAACTG+AGG 0.641006 2_2:+36431001 Msa0249560:CDS
TTTGTTGGATGAATGAAGTG+AGG 0.658438 2_2:+36431288 Msa0249560:three_prime_UTR
ATGACAAATTCAGATCACAA+AGG 0.661195 2_2:+36430706 Msa0249560:CDS
AGAATGGTAGTTCTACAACA+TGG 0.664178 2_2:-36431215 None:intergenic
CACCAAGATGAGAATATGGT+AGG 0.666185 2_2:+36430654 Msa0249560:CDS
AGACGTGTCCATAAGTCTGG+AGG 0.667088 2_2:+36430380 Msa0249560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAAAAAAAAAAAA+AGG - chr2_2:36430562-36430581 None:intergenic 0.0%
!! TTATTTATTAATATTATTTA+TGG + chr2_2:36430593-36430612 Msa0249560:intron 0.0%
!! ATATATAAAAAAAAAAAAAA+AGG - chr2_2:36430562-36430581 None:intergenic 0.0%
!! TTATTTATTAATATTATTTA+TGG + chr2_2:36430593-36430612 Msa0249560:intron 0.0%
!!! AAATAAAAAACTATCTTTTT+AGG - chr2_2:36430786-36430805 None:intergenic 10.0%
!!! AAATAAAAAACTATCTTTTT+AGG - chr2_2:36430786-36430805 None:intergenic 10.0%
!!! GAAAATAAATCAAAACTTTT+TGG - chr2_2:36430764-36430783 None:intergenic 15.0%
!!! GAAAATAAATCAAAACTTTT+TGG - chr2_2:36430764-36430783 None:intergenic 15.0%
!! GAATACCTCTTATATTTATT+TGG + chr2_2:36430083-36430102 Msa0249560:five_prime_UTR 20.0%
!!! TGTTTTAGATAATAATGCTT+TGG - chr2_2:36430252-36430271 None:intergenic 20.0%
!!! AAAGCATTATTATCTAAAAC+AGG + chr2_2:36430251-36430270 Msa0249560:five_prime_UTR 20.0%
!! ACAACAAATTTAGACAATTA+AGG - chr2_2:36431264-36431283 None:intergenic 20.0%
!! GAATACCTCTTATATTTATT+TGG + chr2_2:36430083-36430102 Msa0249560:five_prime_UTR 20.0%
!!! TGTTTTAGATAATAATGCTT+TGG - chr2_2:36430252-36430271 None:intergenic 20.0%
!!! AAAGCATTATTATCTAAAAC+AGG + chr2_2:36430251-36430270 Msa0249560:five_prime_UTR 20.0%
!! ACAACAAATTTAGACAATTA+AGG - chr2_2:36431264-36431283 None:intergenic 20.0%
!!! TATAAGAGGTATTCCTTAAT+AGG - chr2_2:36430077-36430096 None:intergenic 25.0%
! CCTAACCAAATAAATATAAG+AGG - chr2_2:36430091-36430110 None:intergenic 25.0%
! CCTCTTATATTTATTTGGTT+AGG + chr2_2:36430088-36430107 Msa0249560:five_prime_UTR 25.0%
!! AAGAAATGAAAAGCTTGTTT+AGG - chr2_2:36430155-36430174 None:intergenic 25.0%
! TTTGTTCAAACACAGAAAAA+AGG + chr2_2:36430312-36430331 Msa0249560:five_prime_UTR 25.0%
! ATTAATCAGATCTAAGTTCT+AGG - chr2_2:36430873-36430892 None:intergenic 25.0%
!!! GAAACTTGTTATGTATTACT+AGG + chr2_2:36430940-36430959 Msa0249560:intron 25.0%
!! TGTTTGGAATCATTTAAGAT+TGG + chr2_2:36431110-36431129 Msa0249560:CDS 25.0%
!! TGTGAATTATTTTCTAACCA+AGG - chr2_2:36431191-36431210 None:intergenic 25.0%
! GGAAATAGTGAAAATCTAAA+GGG - chr2_2:36431243-36431262 None:intergenic 25.0%
! AGGAAATAGTGAAAATCTAA+AGG - chr2_2:36431244-36431263 None:intergenic 25.0%
!!! AAATTTGTTGTAGACTTTGT+TGG + chr2_2:36431273-36431292 Msa0249560:three_prime_UTR 25.0%
!!! TATAAGAGGTATTCCTTAAT+AGG - chr2_2:36430077-36430096 None:intergenic 25.0%
! CCTAACCAAATAAATATAAG+AGG - chr2_2:36430091-36430110 None:intergenic 25.0%
! CCTCTTATATTTATTTGGTT+AGG + chr2_2:36430088-36430107 Msa0249560:five_prime_UTR 25.0%
!! AAGAAATGAAAAGCTTGTTT+AGG - chr2_2:36430155-36430174 None:intergenic 25.0%
! TTTGTTCAAACACAGAAAAA+AGG + chr2_2:36430312-36430331 Msa0249560:five_prime_UTR 25.0%
! ATTAATCAGATCTAAGTTCT+AGG - chr2_2:36430873-36430892 None:intergenic 25.0%
!!! GAAACTTGTTATGTATTACT+AGG + chr2_2:36430940-36430959 Msa0249560:intron 25.0%
!! TGTTTGGAATCATTTAAGAT+TGG + chr2_2:36431110-36431129 Msa0249560:CDS 25.0%
!! TGTGAATTATTTTCTAACCA+AGG - chr2_2:36431191-36431210 None:intergenic 25.0%
! GGAAATAGTGAAAATCTAAA+GGG - chr2_2:36431243-36431262 None:intergenic 25.0%
! AGGAAATAGTGAAAATCTAA+AGG - chr2_2:36431244-36431263 None:intergenic 25.0%
!!! AAATTTGTTGTAGACTTTGT+TGG + chr2_2:36431273-36431292 Msa0249560:three_prime_UTR 25.0%
! AATGAAAAGCTTGTTTAGGT+GGG - chr2_2:36430151-36430170 None:intergenic 30.0%
! AAATGAAAAGCTTGTTTAGG+TGG - chr2_2:36430152-36430171 None:intergenic 30.0%
! TGAATGATTAGAACTGCTTT+TGG - chr2_2:36430218-36430237 None:intergenic 30.0%
GTGTTATGAGAAGAAAAAGA+TGG - chr2_2:36430419-36430438 None:intergenic 30.0%
TATTTCCTCATCATCTTCAA+TGG + chr2_2:36430487-36430506 Msa0249560:CDS 30.0%
TTTGTCATCCAATCTTTGTT+TGG - chr2_2:36430694-36430713 None:intergenic 30.0%
ATGACAAATTCAGATCACAA+AGG + chr2_2:36430706-36430725 Msa0249560:CDS 30.0%
TGACAAATTCAGATCACAAA+GGG + chr2_2:36430707-36430726 Msa0249560:CDS 30.0%
!! AAAGGGTATCAGAAAACATA+AGG + chr2_2:36430724-36430743 Msa0249560:CDS 30.0%
AGTTACAAACTGAGGTATAT+GGG + chr2_2:36431009-36431028 Msa0249560:CDS 30.0%
GAAAATCTAAAGGGAAAGAA+TGG - chr2_2:36431234-36431253 None:intergenic 30.0%
! AATGAAAAGCTTGTTTAGGT+GGG - chr2_2:36430151-36430170 None:intergenic 30.0%
! AAATGAAAAGCTTGTTTAGG+TGG - chr2_2:36430152-36430171 None:intergenic 30.0%
! TGAATGATTAGAACTGCTTT+TGG - chr2_2:36430218-36430237 None:intergenic 30.0%
GTGTTATGAGAAGAAAAAGA+TGG - chr2_2:36430419-36430438 None:intergenic 30.0%
TATTTCCTCATCATCTTCAA+TGG + chr2_2:36430487-36430506 Msa0249560:CDS 30.0%
TTTGTCATCCAATCTTTGTT+TGG - chr2_2:36430694-36430713 None:intergenic 30.0%
ATGACAAATTCAGATCACAA+AGG + chr2_2:36430706-36430725 Msa0249560:CDS 30.0%
TGACAAATTCAGATCACAAA+GGG + chr2_2:36430707-36430726 Msa0249560:CDS 30.0%
!! AAAGGGTATCAGAAAACATA+AGG + chr2_2:36430724-36430743 Msa0249560:CDS 30.0%
AGTTACAAACTGAGGTATAT+GGG + chr2_2:36431009-36431028 Msa0249560:CDS 30.0%
GAAAATCTAAAGGGAAAGAA+TGG - chr2_2:36431234-36431253 None:intergenic 30.0%
TGGACAGAATTAGACCATAT+GGG - chr2_2:36430046-36430065 None:intergenic 35.0%
GTATTCCTTAATAGGTGAGT+CGG - chr2_2:36430069-36430088 None:intergenic 35.0%
CACAGAAAAAAGGACCAAAA+TGG + chr2_2:36430322-36430341 Msa0249560:exon 35.0%
ATGAGGAAATACGAGATTCA+TGG - chr2_2:36430478-36430497 None:intergenic 35.0%
ACAAACCATTGAAGATGATG+AGG - chr2_2:36430495-36430514 None:intergenic 35.0%
GAAAAAGAACATGAAGTGTG+TGG + chr2_2:36430962-36430981 Msa0249560:CDS 35.0%
CATAGAAGAGTTACAAACTG+AGG + chr2_2:36431001-36431020 Msa0249560:CDS 35.0%
GAGTTACAAACTGAGGTATA+TGG + chr2_2:36431008-36431027 Msa0249560:CDS 35.0%
GTATATGGGACAAAGAAAAG+TGG + chr2_2:36431023-36431042 Msa0249560:CDS 35.0%
! AGAATGGTAGTTCTACAACA+TGG - chr2_2:36431218-36431237 None:intergenic 35.0%
TTTGTTGGATGAATGAAGTG+AGG + chr2_2:36431288-36431307 Msa0249560:three_prime_UTR 35.0%
TGGACAGAATTAGACCATAT+GGG - chr2_2:36430046-36430065 None:intergenic 35.0%
GTATTCCTTAATAGGTGAGT+CGG - chr2_2:36430069-36430088 None:intergenic 35.0%
CACAGAAAAAAGGACCAAAA+TGG + chr2_2:36430322-36430341 Msa0249560:exon 35.0%
ATGAGGAAATACGAGATTCA+TGG - chr2_2:36430478-36430497 None:intergenic 35.0%
ACAAACCATTGAAGATGATG+AGG - chr2_2:36430495-36430514 None:intergenic 35.0%
GAAAAAGAACATGAAGTGTG+TGG + chr2_2:36430962-36430981 Msa0249560:CDS 35.0%
CATAGAAGAGTTACAAACTG+AGG + chr2_2:36431001-36431020 Msa0249560:CDS 35.0%
GAGTTACAAACTGAGGTATA+TGG + chr2_2:36431008-36431027 Msa0249560:CDS 35.0%
GTATATGGGACAAAGAAAAG+TGG + chr2_2:36431023-36431042 Msa0249560:CDS 35.0%
! AGAATGGTAGTTCTACAACA+TGG - chr2_2:36431218-36431237 None:intergenic 35.0%
TTTGTTGGATGAATGAAGTG+AGG + chr2_2:36431288-36431307 Msa0249560:three_prime_UTR 35.0%
GTGGACAGAATTAGACCATA+TGG - chr2_2:36430047-36430066 None:intergenic 40.0%
! ATAATGCTTTGGTGACTGAC+AGG - chr2_2:36430241-36430260 None:intergenic 40.0%
GAAAAAAGGACCAAAATGGC+AGG + chr2_2:36430326-36430345 Msa0249560:exon 40.0%
CAGAAAATCCTCCAGACTTA+TGG - chr2_2:36430391-36430410 None:intergenic 40.0%
!! ACAAAAAGAAGAGCGTCTTG+AGG - chr2_2:36430441-36430460 None:intergenic 40.0%
! TATTCTCATCTTGGTGTGAC+TGG - chr2_2:36430650-36430669 None:intergenic 40.0%
GTCACACCAAGATGAGAATA+TGG + chr2_2:36430650-36430669 Msa0249560:CDS 40.0%
CACCAAGATGAGAATATGGT+AGG + chr2_2:36430654-36430673 Msa0249560:CDS 40.0%
CTCCTACCATATTCTCATCT+TGG - chr2_2:36430659-36430678 None:intergenic 40.0%
TAGAGCAGCCAAACAAAGAT+TGG + chr2_2:36430683-36430702 Msa0249560:CDS 40.0%
AAGAACATGAAGTGTGTGGA+AGG + chr2_2:36430966-36430985 Msa0249560:CDS 40.0%
! CAAATTGAGCTGGAAAGCAT+CGG + chr2_2:36431067-36431086 Msa0249560:CDS 40.0%
AACTTGTGTGCACAAGGTAA+AGG - chr2_2:36431149-36431168 None:intergenic 40.0%
GTGGACAGAATTAGACCATA+TGG - chr2_2:36430047-36430066 None:intergenic 40.0%
! ATAATGCTTTGGTGACTGAC+AGG - chr2_2:36430241-36430260 None:intergenic 40.0%
GAAAAAAGGACCAAAATGGC+AGG + chr2_2:36430326-36430345 Msa0249560:exon 40.0%
CAGAAAATCCTCCAGACTTA+TGG - chr2_2:36430391-36430410 None:intergenic 40.0%
!! ACAAAAAGAAGAGCGTCTTG+AGG - chr2_2:36430441-36430460 None:intergenic 40.0%
! TATTCTCATCTTGGTGTGAC+TGG - chr2_2:36430650-36430669 None:intergenic 40.0%
GTCACACCAAGATGAGAATA+TGG + chr2_2:36430650-36430669 Msa0249560:CDS 40.0%
CACCAAGATGAGAATATGGT+AGG + chr2_2:36430654-36430673 Msa0249560:CDS 40.0%
CTCCTACCATATTCTCATCT+TGG - chr2_2:36430659-36430678 None:intergenic 40.0%
TAGAGCAGCCAAACAAAGAT+TGG + chr2_2:36430683-36430702 Msa0249560:CDS 40.0%
AAGAACATGAAGTGTGTGGA+AGG + chr2_2:36430966-36430985 Msa0249560:CDS 40.0%
! CAAATTGAGCTGGAAAGCAT+CGG + chr2_2:36431067-36431086 Msa0249560:CDS 40.0%
AACTTGTGTGCACAAGGTAA+AGG - chr2_2:36431149-36431168 None:intergenic 40.0%
TTCCTTAATAGGTGAGTCGG+TGG - chr2_2:36430066-36430085 None:intergenic 45.0%
!!! CTGCTTTTGGTGATGCTAGT+GGG - chr2_2:36430205-36430224 None:intergenic 45.0%
!!! ACTGCTTTTGGTGATGCTAG+TGG - chr2_2:36430206-36430225 None:intergenic 45.0%
!!! TGGAAGCATTCCTGCCATTT+TGG - chr2_2:36430339-36430358 None:intergenic 45.0%
AAAATGGCAGGAATGCTTCC+AGG + chr2_2:36430338-36430357 Msa0249560:exon 45.0%
! CTTCTAGCTGATTCAACTCC+TGG - chr2_2:36430359-36430378 None:intergenic 45.0%
AGAAGACGTGTCCATAAGTC+TGG + chr2_2:36430377-36430396 Msa0249560:CDS 45.0%
GGACAAAGAAAAGTGGTCCA+AGG + chr2_2:36431030-36431049 Msa0249560:CDS 45.0%
TTGCTCCAACTGAACTTCCT+TGG - chr2_2:36431050-36431069 None:intergenic 45.0%
TCAGTTGGAGCAAATTGAGC+TGG + chr2_2:36431057-36431076 Msa0249560:CDS 45.0%
AGAGGATTGTGCTGTGTGTT+TGG + chr2_2:36431094-36431113 Msa0249560:CDS 45.0%
GAATGGAACTTGTGTGCACA+AGG - chr2_2:36431155-36431174 None:intergenic 45.0%
AAGGCTTCAAGCATGTGGAA+TGG - chr2_2:36431172-36431191 None:intergenic 45.0%
ATTCCACATGCTTGAAGCCT+TGG + chr2_2:36431171-36431190 Msa0249560:CDS 45.0%
TAACCAAGGCTTCAAGCATG+TGG - chr2_2:36431177-36431196 None:intergenic 45.0%
TTCCTTAATAGGTGAGTCGG+TGG - chr2_2:36430066-36430085 None:intergenic 45.0%
!!! CTGCTTTTGGTGATGCTAGT+GGG - chr2_2:36430205-36430224 None:intergenic 45.0%
!!! ACTGCTTTTGGTGATGCTAG+TGG - chr2_2:36430206-36430225 None:intergenic 45.0%
!!! TGGAAGCATTCCTGCCATTT+TGG - chr2_2:36430339-36430358 None:intergenic 45.0%
AAAATGGCAGGAATGCTTCC+AGG + chr2_2:36430338-36430357 Msa0249560:exon 45.0%
! CTTCTAGCTGATTCAACTCC+TGG - chr2_2:36430359-36430378 None:intergenic 45.0%
AGAAGACGTGTCCATAAGTC+TGG + chr2_2:36430377-36430396 Msa0249560:CDS 45.0%
GGACAAAGAAAAGTGGTCCA+AGG + chr2_2:36431030-36431049 Msa0249560:CDS 45.0%
TTGCTCCAACTGAACTTCCT+TGG - chr2_2:36431050-36431069 None:intergenic 45.0%
TCAGTTGGAGCAAATTGAGC+TGG + chr2_2:36431057-36431076 Msa0249560:CDS 45.0%
AGAGGATTGTGCTGTGTGTT+TGG + chr2_2:36431094-36431113 Msa0249560:CDS 45.0%
GAATGGAACTTGTGTGCACA+AGG - chr2_2:36431155-36431174 None:intergenic 45.0%
AAGGCTTCAAGCATGTGGAA+TGG - chr2_2:36431172-36431191 None:intergenic 45.0%
ATTCCACATGCTTGAAGCCT+TGG + chr2_2:36431171-36431190 Msa0249560:CDS 45.0%
TAACCAAGGCTTCAAGCATG+TGG - chr2_2:36431177-36431196 None:intergenic 45.0%
!! GTCCACCGACTCACCTATTA+AGG + chr2_2:36430061-36430080 Msa0249560:five_prime_UTR 50.0%
AGACGTGTCCATAAGTCTGG+AGG + chr2_2:36430380-36430399 Msa0249560:CDS 50.0%
GTGGTCCAAGGAAGTTCAGT+TGG + chr2_2:36431042-36431061 Msa0249560:CDS 50.0%
!! CTGGAAAGCATCGGAACAAG+AGG + chr2_2:36431076-36431095 Msa0249560:CDS 50.0%
!! GTCCACCGACTCACCTATTA+AGG + chr2_2:36430061-36430080 Msa0249560:five_prime_UTR 50.0%
AGACGTGTCCATAAGTCTGG+AGG + chr2_2:36430380-36430399 Msa0249560:CDS 50.0%
GTGGTCCAAGGAAGTTCAGT+TGG + chr2_2:36431042-36431061 Msa0249560:CDS 50.0%
!! CTGGAAAGCATCGGAACAAG+AGG + chr2_2:36431076-36431095 Msa0249560:CDS 50.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 36430030 36431317 36430030 ID=Msa0249560;Name=Msa0249560
chr2_2 mRNA 36430030 36431317 36430030 ID=Msa0249560-mRNA-1;Parent=Msa0249560;Name=Msa0249560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=311|1|1|1|1|1|3|70|189
chr2_2 exon 36430030 36430508 36430030 ID=Msa0249560-mRNA-1:exon:11676;Parent=Msa0249560-mRNA-1
chr2_2 exon 36430630 36430745 36430630 ID=Msa0249560-mRNA-1:exon:11677;Parent=Msa0249560-mRNA-1
chr2_2 exon 36430962 36431317 36430962 ID=Msa0249560-mRNA-1:exon:11678;Parent=Msa0249560-mRNA-1
chr2_2 five_prime_UTR 36430030 36430340 36430030 ID=Msa0249560-mRNA-1:five_prime_utr;Parent=Msa0249560-mRNA-1
chr2_2 CDS 36430341 36430508 36430341 ID=Msa0249560-mRNA-1:cds;Parent=Msa0249560-mRNA-1
chr2_2 CDS 36430630 36430745 36430630 ID=Msa0249560-mRNA-1:cds;Parent=Msa0249560-mRNA-1
chr2_2 CDS 36430962 36431247 36430962 ID=Msa0249560-mRNA-1:cds;Parent=Msa0249560-mRNA-1
chr2_2 three_prime_UTR 36431248 36431317 36431248 ID=Msa0249560-mRNA-1:three_prime_utr;Parent=Msa0249560-mRNA-1
Gene Sequence

>Msa0249560

ATGGCAGGAATGCTTCCAGGAGTTGAATCAGCTAGAAGAAGACGTGTCCATAAGTCTGGAGGATTTTCTGATTCACCATCTTTTTCTTCTCATAACACCTCAAGACGCTCTTCTTTTTGTTTGTATGCAAGTAACCATGAATCTCGTATTTCCTCATCATCTTCAATGCAAAGAAATATATTATACCAGTCACACCAAGATGAGAATATGGTAGGAGCAGCTAGAGCAGCCAAACAAAGATTGGATGACAAATTCAGATCACAAAGGGTATCAGAAAACATAAGGAAAAAGAACATGAAGTGTGTGGAAGGTAGAAACGAAAGCATAGAAGAGTTACAAACTGAGGTATATGGGACAAAGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCATCGGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGACAAATTGATTCCTTTACCTTGTGCACACAAGTTCCATTCCACATGCTTGAAGCCTTGGTTAGAAAATAATTCACACTGTCCATGTTGTAGAACTACCATTCTTTCCCTTTAG

Protein sequence

>Msa0249560

MAGMLPGVESARRRRVHKSGGFSDSPSFSSHNTSRRSSFCLYASNHESRISSSSSMQRNILYQSHQDENMVGAARAAKQRLDDKFRSQRVSENIRKKNMKCVEGRNESIEELQTEVYGTKKSGPRKFSWSKLSWKASEQEDCAVCLESFKIGDKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILSL*