AlfalfaGEDB | Msa1407950

M. sativa cultivar zhongmu-4 / Msa1407950

KEGG: K12164
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407950	XP_003602810.1	90.678	118	4	1	1	111	310	427	6.76e-59	197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407950	sp\|O23034\|UBA5_ARATH	57.258	124	40	3	1	111	308	431	3.75e-35	127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407950	G7J3W6	90.678	118	4	1	1	111	310	427	3.23e-59	197

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020930	Msa1407950	0.800172	1.632657e-48	-8.615850e-47
Msa0112750	Msa1407950	0.809369	1.957640e-50	-8.615850e-47
Msa0114060	Msa1407950	0.800148	1.651329e-48	-8.615850e-47
Msa0159930	Msa1407950	0.819720	1.001506e-52	-8.615850e-47
Msa0220580	Msa1407950	0.814345	1.615333e-51	-8.615850e-47
Msa0309770	Msa1407950	0.800387	1.476374e-48	-8.615850e-47
Msa0357340	Msa1407950	0.804363	2.238984e-49	-8.615850e-47
Msa0379270	Msa1407950	0.981129	7.653733e-152	-8.615850e-47
Msa0411160	Msa1407950	0.801242	9.877614e-49	-8.615850e-47
Msa0411190	Msa1407950	0.801419	9.084052e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407950	MtrunA17_Chr3g0132251	90.678	118	4	1	1	111	310	427	6.22e-63	197
Msa1407950	MtrunA17_Chr2g0302261	89.831	118	5	1	1	111	310	427	3.16e-62	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407950	AT1G05350.1	57.258	124	40	3	1	111	308	431	3.81e-36	127

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Find 34 sgRNAs with CRISPR-Local

Find 644 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAAATTGGAGGCTGA+AGG	0.604076	tig0023338:-31170	Msa1407950:CDS
AACACACTAAAGTTCTTGTT+AGG	0.352881	tig0023338:-31630	Msa1407950:five_prime_UTR
AAGCTGCATTTGAACATTGA+GGG	0.470847	tig0023338:+31343	None:intergenic
AATGGACCTTCTTCAATTAA+TGG	0.295818	tig0023338:+31146	None:intergenic
ACAAGAACTTTAGTGTGTTT+TGG	0.276561	tig0023338:+31634	None:intergenic
ACATTCTTGCAAAGCCAACA+AGG	0.600442	tig0023338:-31205	Msa1407950:CDS
AGGTCATCATTGTCATTGCT+TGG	0.493955	tig0023338:+27625	None:intergenic
AGTGCAGGACTTACCAAATA+AGG	0.355425	tig0023338:+31591	None:intergenic
AGTTCATGAGTGAGACCTTC+AGG	0.342725	tig0023338:+27691	None:intergenic
ATGACCTTGACGAACTACGA+AGG	0.678833	tig0023338:-27609	Msa1407950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACACTAAAGTTCTTGTT+AGG	-	tig0023338:27596-27615	Msa1407950:CDS	30.0%
ACATACAAGAAAACAGAAAC+GGG	+	tig0023338:27811-27830	None:intergenic	30.0%
AATGGACCTTCTTCAATTAA+TGG	+	tig0023338:28083-28102	None:intergenic	30.0%
TACCCTATTGATAAGCTTAA+TGG	-	tig0023338:28384-28403	Msa1407950:intron	30.0%
ACCCTATTGATAAGCTTAAT+GGG	-	tig0023338:28385-28404	Msa1407950:intron	30.0%
ACCCATTAAGCTTATCAATA+GGG	+	tig0023338:28389-28408	None:intergenic	30.0%
AACCCATTAAGCTTATCAAT+AGG	+	tig0023338:28390-28409	None:intergenic	30.0%
TTTCTAGATACGTCTAGTAT+GGG	+	tig0023338:28421-28440	None:intergenic	30.0%
GTAAACATGTAAGCATGAAT+AGG	+	tig0023338:29530-29549	None:intergenic	30.0%
GCAAGTAATTCATTAAGCAA+AGG	+	tig0023338:29737-29756	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023338	gene	27582	31666	27582	ID=Msa1407950;Name=Msa1407950
tig0023338	mRNA	27582	31666	27582	ID=Msa1407950-mRNA-1;Parent=Msa1407950;Name=Msa1407950-mRNA-1;_AED=0.26;_eAED=0.26;_QI=95\|0.5\|0.4\|0.6\|1\|0.8\|5\|0\|111
tig0023338	exon	27582	27721	27582	ID=Msa1407950-mRNA-1:exon:25396;Parent=Msa1407950-mRNA-1
tig0023338	exon	30911	30936	30911	ID=Msa1407950-mRNA-1:exon:25395;Parent=Msa1407950-mRNA-1
tig0023338	exon	31119	31234	31119	ID=Msa1407950-mRNA-1:exon:25394;Parent=Msa1407950-mRNA-1
tig0023338	exon	31329	31415	31329	ID=Msa1407950-mRNA-1:exon:25393;Parent=Msa1407950-mRNA-1
tig0023338	exon	31605	31666	31605	ID=Msa1407950-mRNA-1:exon:25392;Parent=Msa1407950-mRNA-1
tig0023338	five_prime_UTR	31605	31666	31605	ID=Msa1407950-mRNA-1:five_prime_utr;Parent=Msa1407950-mRNA-1
tig0023338	five_prime_UTR	31383	31415	31383	ID=Msa1407950-mRNA-1:five_prime_utr;Parent=Msa1407950-mRNA-1
tig0023338	CDS	31329	31382	31329	ID=Msa1407950-mRNA-1:cds;Parent=Msa1407950-mRNA-1
tig0023338	CDS	31119	31234	31119	ID=Msa1407950-mRNA-1:cds;Parent=Msa1407950-mRNA-1
tig0023338	CDS	30911	30936	30911	ID=Msa1407950-mRNA-1:cds;Parent=Msa1407950-mRNA-1
tig0023338	CDS	27582	27721	27582	ID=Msa1407950-mRNA-1:cds;Parent=Msa1407950-mRNA-1

Gene Sequence	>Msa1407950 ATGCAAATGAAGCCAAACCCTCAATGTTCAAATGCAGCTTGCTTAAAACGACAGGGCGAGTACATTCTTGCAAAGCCAACAAGGGATGCTGCCGCAAAAGCAAAATTGGAGGCTGAAGGACCATTAATTGAAGAAGGTCCATTGCACGATGATAACGAATGGAATATAAGTGTCGTTGATGGTTGTGAGCCAGATGATTCCCTTCCTGAAGGTCTCACTCATGAACTTCCTACTGCGGATGAATTTCAGAACCTAGTCACTCCTGAAGCTCCAAGCAATGACAATGATGACCTTGACGAACTACGAAGGCAACTTGAAGCAATTAATTCTGCATAG
Protein sequence	>Msa1407950 MQMKPNPQCSNAACLKRQGEYILAKPTRDAAAKAKLEAEGPLIEEGPLHDDNEWNISVVDGCEPDDSLPEGLTHELPTADEFQNLVTPEAPSNDNDDLDELRRQLEAINSA*