Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1402590 | RHN69872.1 | 77.778 | 171 | 19 | 1 | 1 | 152 | 15 | 185 | 1.31e-52 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1402590 | sp|Q99JH1|RP25L_MOUSE | 38.554 | 83 | 49 | 1 | 3 | 83 | 52 | 134 | 4.69e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1402590 | A0A396IWE9 | 77.778 | 171 | 19 | 1 | 1 | 152 | 15 | 185 | 6.28e-53 | 176 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004880 | Msa1402590 | 0.811992 | 5.304017e-51 | -8.615850e-47 |
Msa0017510 | Msa1402590 | 0.853685 | 2.029521e-61 | -8.615850e-47 |
Msa0051790 | Msa1402590 | 0.801999 | 6.905862e-49 | -8.615850e-47 |
Msa0110970 | Msa1402590 | 0.825751 | 3.952460e-54 | -8.615850e-47 |
Msa0112750 | Msa1402590 | 0.815811 | 7.635959e-52 | -8.615850e-47 |
Msa1353470 | Msa1402590 | 0.822363 | 2.465842e-53 | -8.615850e-47 |
Msa1359040 | Msa1402590 | 0.805897 | 1.069100e-49 | -8.615850e-47 |
Msa1374550 | Msa1402590 | 0.822911 | 1.838205e-53 | -8.615850e-47 |
Msa1397250 | Msa1402590 | 0.817682 | 2.904779e-52 | -8.615850e-47 |
Msa1397860 | Msa1402590 | 0.804328 | 2.276709e-49 | -8.615850e-47 |
Msa1402590 | Msa1407950 | 0.803251 | 3.811165e-49 | -8.615850e-47 |
Msa1402590 | Msa1452240 | 0.808165 | 3.540775e-50 | -8.615850e-47 |
Msa1402590 | Msa1466540 | 0.800686 | 1.282594e-48 | -8.615850e-47 |
Msa0616020 | Msa1402590 | 0.801116 | 1.048162e-48 | -8.615850e-47 |
Msa0625070 | Msa1402590 | 0.808947 | 2.411025e-50 | -8.615850e-47 |
Msa0626090 | Msa1402590 | 0.805095 | 1.575118e-49 | -8.615850e-47 |
Msa0644840 | Msa1402590 | 0.803705 | 3.069155e-49 | -8.615850e-47 |
Msa0657970 | Msa1402590 | 0.828652 | 7.982741e-55 | -8.615850e-47 |
Msa0673450 | Msa1402590 | 0.800800 | 1.216099e-48 | -8.615850e-47 |
Msa0673460 | Msa1402590 | 0.809579 | 1.764915e-50 | -8.615850e-47 |
Msa0696640 | Msa1402590 | 0.805798 | 1.121623e-49 | -8.615850e-47 |
Msa0749290 | Msa1402590 | 0.801443 | 8.984625e-49 | -8.615850e-47 |
Msa0803890 | Msa1402590 | 0.825703 | 4.055415e-54 | -8.615850e-47 |
Msa0126370 | Msa1402590 | 0.801217 | 9.991311e-49 | -8.615850e-47 |
Msa0141620 | Msa1402590 | 0.805641 | 1.210023e-49 | -8.615850e-47 |
Msa0157290 | Msa1402590 | 0.853017 | 3.155782e-61 | -8.615850e-47 |
Msa0197930 | Msa1402590 | 0.821108 | 4.811577e-53 | -8.615850e-47 |
Msa0220740 | Msa1402590 | 0.805836 | 1.101329e-49 | -8.615850e-47 |
Msa0225600 | Msa1402590 | 0.803414 | 3.526935e-49 | -8.615850e-47 |
Msa1226660 | Msa1402590 | 0.804133 | 2.500753e-49 | -8.615850e-47 |
Msa1267960 | Msa1402590 | 0.821771 | 3.382200e-53 | -8.615850e-47 |
Msa1314340 | Msa1402590 | 0.816951 | 4.244075e-52 | -8.615850e-47 |
Msa1324500 | Msa1402590 | 0.804143 | 2.488307e-49 | -8.615850e-47 |
Msa1336710 | Msa1402590 | 0.809660 | 1.695451e-50 | -8.615850e-47 |
Msa0379270 | Msa1402590 | 0.807720 | 4.402681e-50 | -8.615850e-47 |
Msa0402290 | Msa1402590 | 0.806304 | 8.779686e-50 | -8.615850e-47 |
Msa0419820 | Msa1402590 | 0.801451 | 8.947577e-49 | -8.615850e-47 |
Msa0425400 | Msa1402590 | 0.991912 | 3.095435e-190 | -8.615850e-47 |
Msa0428590 | Msa1402590 | 0.802866 | 4.578203e-49 | -8.615850e-47 |
Msa0990350 | Msa1402590 | 0.820139 | 8.031170e-53 | -8.615850e-47 |
Msa1004550 | Msa1402590 | 0.809138 | 2.194455e-50 | -8.615850e-47 |
Msa1004600 | Msa1402590 | 0.816142 | 6.440410e-52 | -8.615850e-47 |
Msa1060220 | Msa1402590 | 0.805677 | 1.189507e-49 | -8.615850e-47 |
Msa1082500 | Msa1402590 | 0.823377 | 1.431601e-53 | -8.615850e-47 |
Msa0257460 | Msa1402590 | 0.821867 | 3.212387e-53 | -8.615850e-47 |
Msa0266450 | Msa1402590 | 0.806468 | 8.106794e-50 | -8.615850e-47 |
Msa0296740 | Msa1402590 | 0.808401 | 3.153160e-50 | -8.615850e-47 |
Msa0334360 | Msa1402590 | 0.804689 | 1.915130e-49 | -8.615850e-47 |
Msa0355220 | Msa1402590 | 0.801868 | 7.350325e-49 | -8.615850e-47 |
Msa1123380 | Msa1402590 | 0.803342 | 3.649301e-49 | -8.615850e-47 |
Msa1147900 | Msa1402590 | 0.827128 | 1.856179e-54 | -8.615850e-47 |
Msa1172670 | Msa1402590 | 0.836541 | 8.809885e-57 | -8.615850e-47 |
Msa1179460 | Msa1402590 | 0.804935 | 1.701478e-49 | -8.615850e-47 |
Msa1193290 | Msa1402590 | 0.803217 | 3.872761e-49 | -8.615850e-47 |
Msa1197590 | Msa1402590 | 0.807716 | 4.411521e-50 | -8.615850e-47 |
Msa0484780 | Msa1402590 | 0.820174 | 7.884727e-53 | -8.615850e-47 |
Msa0495320 | Msa1402590 | 0.804941 | 1.695865e-49 | -8.615850e-47 |
Msa0512900 | Msa1402590 | 0.803522 | 3.348896e-49 | -8.615850e-47 |
Msa0523460 | Msa1402590 | 0.812377 | 4.370769e-51 | -8.615850e-47 |
Msa0534590 | Msa1402590 | 0.802806 | 4.711111e-49 | -8.615850e-47 |
Msa0551890 | Msa1402590 | 0.804180 | 2.444533e-49 | -8.615850e-47 |
Msa0861870 | Msa1402590 | 0.803154 | 3.990970e-49 | -8.615850e-47 |
Msa0876660 | Msa1402590 | 0.811124 | 8.190970e-51 | -8.615850e-47 |
Msa0880140 | Msa1402590 | 0.852956 | 3.284636e-61 | -8.615850e-47 |
Msa0907070 | Msa1402590 | 0.808348 | 3.236842e-50 | -8.615850e-47 |
Msa0947660 | Msa1402590 | 0.807517 | 4.863360e-50 | -8.615850e-47 |
Msa0953550 | Msa1402590 | 0.814309 | 1.645292e-51 | -8.615850e-47 |
Msa0954130 | Msa1402590 | 0.832202 | 1.081320e-55 | -8.615850e-47 |
Msa0954530 | Msa1402590 | 0.807548 | 4.789868e-50 | -8.615850e-47 |
Msa0954550 | Msa1402590 | 0.822050 | 2.914769e-53 | -8.615850e-47 |
Msa0966400 | Msa1402590 | 0.805087 | 1.581180e-49 | -8.615850e-47 |
Msa0969520 | Msa1402590 | 0.802381 | 5.762797e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1402590 | MtrunA17_Chr3g0129501 | 77.778 | 171 | 19 | 1 | 1 | 152 | 15 | 185 | 1.21e-56 | 176 |
Msa1402590 | MtrunA17_Chr3g0129471 | 82.635 | 167 | 10 | 1 | 1 | 148 | 15 | 181 | 4.18e-55 | 172 |
Msa1402590 | MtrunA17_Chr3g0129481 | 77.273 | 132 | 10 | 2 | 1 | 112 | 15 | 146 | 1.19e-49 | 158 |
Msa1402590 | MtrunA17_Chr7g0237631 | 50.435 | 115 | 52 | 2 | 1 | 111 | 43 | 156 | 3.60e-32 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1402590 | AT1G76010.2 | 83.133 | 83 | 14 | 0 | 1 | 83 | 43 | 125 | 4.36e-41 | 140 |
Msa1402590 | AT1G76010.1 | 83.133 | 83 | 14 | 0 | 1 | 83 | 43 | 125 | 4.36e-41 | 140 |
Msa1402590 | AT1G20220.1 | 75.309 | 81 | 20 | 0 | 3 | 83 | 45 | 125 | 2.92e-36 | 127 |
Msa1402590 | AT3G07030.2 | 50.459 | 109 | 53 | 1 | 1 | 108 | 43 | 151 | 1.18e-29 | 111 |
Msa1402590 | AT3G07030.3 | 50.459 | 109 | 53 | 1 | 1 | 108 | 43 | 151 | 1.18e-29 | 111 |
Msa1402590 | AT3G07030.4 | 50.459 | 109 | 53 | 1 | 1 | 108 | 43 | 151 | 1.30e-29 | 111 |
Msa1402590 | AT3G07030.1 | 50.459 | 109 | 53 | 1 | 1 | 108 | 43 | 151 | 3.18e-29 | 110 |
Msa1402590 | AT3G07030.5 | 50.459 | 109 | 53 | 1 | 1 | 108 | 43 | 151 | 8.89e-29 | 109 |
Find 61 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCATGGGACCGTGCCTTCC+GGG | 0.255304 | tig0022882:+1591 | Msa1402590:CDS |
CTGCATCAGAACACTATTAT+TGG | 0.280228 | tig0022882:+511 | Msa1402590:CDS |
AGGGGAAGGGGAAGAGGCAG+AGG | 0.291828 | tig0022882:+1348 | Msa1402590:CDS |
GTGCATGGGACCGTGCCTTC+CGG | 0.325746 | tig0022882:+1590 | Msa1402590:CDS |
GACGATTACTGAGCTAATTA+AGG | 0.344294 | tig0022882:+382 | Msa1402590:CDS |
GCCGAGGGCGTGGCCGTGCA+TGG | 0.353826 | tig0022882:+1575 | Msa1402590:CDS |
CGTGGTCATGGAAGGGGAAG+GGG | 0.358028 | tig0022882:+1336 | Msa1402590:CDS |
CATGGAAGGGGAAGGGGAAG+AGG | 0.385120 | tig0022882:+1342 | Msa1402590:CDS |
CGTCCCCTTCCTCGCATCCT+TGG | 0.392491 | tig0022882:-1315 | None:intergenic |
TGGGATCGTGGGCGTGGCTA+TGG | 0.404622 | tig0022882:+1550 | Msa1402590:CDS |
TCTTTGTAGCAATGTACAAT+GGG | 0.415329 | tig0022882:+1506 | Msa1402590:intron |
AGGGGACGTGGTCATGGAAG+GGG | 0.416336 | tig0022882:+1330 | Msa1402590:CDS |
CACCATTGTCGTAACCCAAC+TGG | 0.418318 | tig0022882:-1640 | None:intergenic |
TATGGAATATGGTGTTGGTT+GGG | 0.418838 | tig0022882:+1531 | Msa1402590:CDS |
GGCTATGGTGGCCGAGGGCG+TGG | 0.425853 | tig0022882:+1565 | Msa1402590:CDS |
CCCATGCACGGCCACGCCCT+CGG | 0.440800 | tig0022882:-1576 | None:intergenic |
GGGCGTGGCTATGGTGGCCG+AGG | 0.442600 | tig0022882:+1559 | Msa1402590:CDS |
GGCTATGTTGCCCAACCAGT+TGG | 0.448263 | tig0022882:+1625 | Msa1402590:CDS |
TATGGTGTTGGTTGGGATCG+TGG | 0.457141 | tig0022882:+1538 | Msa1402590:CDS |
TTGTCGTAACCCAACTGGTT+GGG | 0.464326 | tig0022882:-1635 | None:intergenic |
GAAGGGGACGTGGTCATGGA+AGG | 0.470202 | tig0022882:+1328 | Msa1402590:CDS |
CGAGGAAGGGGACGTGGTCA+TGG | 0.475479 | tig0022882:+1324 | Msa1402590:CDS |
GTTGGTTGGGATCGTGGGCG+TGG | 0.477701 | tig0022882:+1544 | Msa1402590:CDS |
GTCCTTGTCCCCGGAAGGCA+CGG | 0.496199 | tig0022882:-1600 | None:intergenic |
CCGAGGGCGTGGCCGTGCAT+GGG | 0.496548 | tig0022882:+1576 | Msa1402590:CDS |
TACTTTGTCAAAGAAAGAGC+TGG | 0.498781 | tig0022882:+711 | Msa1402590:CDS |
ATGGTGTTGGTTGGGATCGT+GGG | 0.508635 | tig0022882:+1539 | Msa1402590:CDS |
GCTCACCAAGGATGCGAGGA+AGG | 0.509460 | tig0022882:+1310 | Msa1402590:CDS |
CAATGAAAACATACGGAAGA+AGG | 0.509927 | tig0022882:-576 | None:intergenic |
GCCTTCCGGGGACAAGGACG+TGG | 0.511407 | tig0022882:+1604 | Msa1402590:CDS |
ACGTGGTCATGGAAGGGGAA+GGG | 0.511503 | tig0022882:+1335 | Msa1402590:CDS |
TTCTTTGTAGCAATGTACAA+TGG | 0.511866 | tig0022882:+1505 | Msa1402590:intron |
TCACCAAGGATGCGAGGAAG+GGG | 0.513276 | tig0022882:+1312 | Msa1402590:CDS |
GTATGGAATATGGTGTTGGT+TGG | 0.515952 | tig0022882:+1530 | Msa1402590:CDS |
GCTATGTTGCCCAACCAGTT+GGG | 0.516803 | tig0022882:+1626 | Msa1402590:CDS |
GAAATCGTTCTCAAAGCAAT+GGG | 0.517050 | tig0022882:+338 | Msa1402590:CDS |
AGGATGCGAGGAAGGGGACG+TGG | 0.528783 | tig0022882:+1318 | Msa1402590:CDS |
GACCGTGCCTTCCGGGGACA+AGG | 0.537309 | tig0022882:+1598 | Msa1402590:CDS |
AAGGGGACGTGGTCATGGAA+GGG | 0.539214 | tig0022882:+1329 | Msa1402590:CDS |
GATCGTGGGCGTGGCTATGG+TGG | 0.544364 | tig0022882:+1553 | Msa1402590:CDS |
GAGCTGGATACATCCTCCAC+AGG | 0.550506 | tig0022882:+727 | Msa1402590:CDS |
AGAAATCGTTCTCAAAGCAA+TGG | 0.552556 | tig0022882:+337 | Msa1402590:CDS |
CTCACCAAGGATGCGAGGAA+GGG | 0.554843 | tig0022882:+1311 | Msa1402590:CDS |
CATAGCCACGTCCTTGTCCC+CGG | 0.557943 | tig0022882:-1609 | None:intergenic |
GGCGTGGCTATGGTGGCCGA+GGG | 0.561420 | tig0022882:+1560 | Msa1402590:CDS |
CAACTGATATAACTGACACA+TGG | 0.565866 | tig0022882:+536 | Msa1402590:CDS |
GGAAGGCACGGTCCCATGCA+CGG | 0.571130 | tig0022882:-1588 | None:intergenic |
ATTGTCGTAACCCAACTGGT+TGG | 0.572944 | tig0022882:-1636 | None:intergenic |
ACATGGGAACCACTTGAAGA+AGG | 0.580775 | tig0022882:+553 | Msa1402590:CDS |
GGAAGAAGGCCTTCTTCAAG+TGG | 0.583553 | tig0022882:-562 | None:intergenic |
GCCACGTCCTTGTCCCCGGA+AGG | 0.587486 | tig0022882:-1605 | None:intergenic |
GACGTGGTCATGGAAGGGGA+AGG | 0.589407 | tig0022882:+1334 | Msa1402590:CDS |
GCATGGGACCGTGCCTTCCG+GGG | 0.596851 | tig0022882:+1592 | Msa1402590:CDS |
AACCAGTTGGGTTACGACAA+TGG | 0.598146 | tig0022882:+1638 | Msa1402590:CDS |
AACTGATATAACTGACACAT+GGG | 0.600887 | tig0022882:+537 | Msa1402590:CDS |
GAAGGCTCACCAAGGATGCG+AGG | 0.637231 | tig0022882:+1306 | Msa1402590:intron |
TGAAAGTTCATACCCTGTGG+AGG | 0.649730 | tig0022882:-740 | None:intergenic |
CTTTGTAGCAATGTACAATG+GGG | 0.653996 | tig0022882:+1507 | Msa1402590:intron |
TTTGTAGCAATGTACAATGG+GGG | 0.656698 | tig0022882:+1508 | Msa1402590:intron |
TTGAAACAGAAGGCTCACCA+AGG | 0.662596 | tig0022882:+1298 | Msa1402590:intron |
AGCTGGATACATCCTCCACA+GGG | 0.668533 | tig0022882:+728 | Msa1402590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTACATAATTTAATCAAA+AGG | - | tig0022882:1196-1215 | None:intergenic | 10.0% |
!!! | TTTTACATAATTTAATCAAA+AGG | - | tig0022882:1196-1215 | None:intergenic | 10.0% |
!! | TAAATATATAGTAACTTCAA+TGG | + | tig0022882:1028-1047 | Msa1402590:intron | 15.0% |
!! | TAAATATATAGTAACTTCAA+TGG | + | tig0022882:1028-1047 | Msa1402590:intron | 15.0% |
!!! | ATTGTATTTTTTGAAACAGA+AGG | + | tig0022882:1288-1307 | Msa1402590:intron | 20.0% |
!!! | ATTTTAAAAGAACCCATAAA+AGG | - | tig0022882:1457-1476 | None:intergenic | 20.0% |
!!! | ATTGTATTTTTTGAAACAGA+AGG | + | tig0022882:1288-1307 | Msa1402590:intron | 20.0% |
!!! | ATTTTAAAAGAACCCATAAA+AGG | - | tig0022882:1457-1476 | None:intergenic | 20.0% |
!! | CTCTGAAAAACATAGAATAT+CGG | - | tig0022882:478-497 | None:intergenic | 25.0% |
!!! | TATTCTATGTTTTTCAGAGA+AGG | + | tig0022882:479-498 | Msa1402590:intron | 25.0% |
! | GTGAAAACAATGAAAACATA+CGG | - | tig0022882:586-605 | None:intergenic | 25.0% |
!! | TAAATCTTACAGAAGTACAA+TGG | - | tig0022882:991-1010 | None:intergenic | 25.0% |
! | ATTGTACTTCTGTAAGATTT+AGG | + | tig0022882:990-1009 | Msa1402590:intron | 25.0% |
! | TTGTACTTCTGTAAGATTTA+GGG | + | tig0022882:991-1010 | Msa1402590:intron | 25.0% |
!! | ACATTAGAACTTTCTCATTT+TGG | - | tig0022882:1161-1180 | None:intergenic | 25.0% |
! | AATTATGTAAAATACTCACG+AGG | + | tig0022882:1204-1223 | Msa1402590:intron | 25.0% |
! | AGGATATGATGTATGAAATA+AGG | - | tig0022882:1239-1258 | None:intergenic | 25.0% |
! | TTTGCATATTTAACTGCAAT+TGG | + | tig0022882:1389-1408 | Msa1402590:intron | 25.0% |
!! | CTCTGAAAAACATAGAATAT+CGG | - | tig0022882:478-497 | None:intergenic | 25.0% |
!!! | TATTCTATGTTTTTCAGAGA+AGG | + | tig0022882:479-498 | Msa1402590:intron | 25.0% |
! | GTGAAAACAATGAAAACATA+CGG | - | tig0022882:586-605 | None:intergenic | 25.0% |
!! | TAAATCTTACAGAAGTACAA+TGG | - | tig0022882:991-1010 | None:intergenic | 25.0% |
! | ATTGTACTTCTGTAAGATTT+AGG | + | tig0022882:990-1009 | Msa1402590:intron | 25.0% |
! | TTGTACTTCTGTAAGATTTA+GGG | + | tig0022882:991-1010 | Msa1402590:intron | 25.0% |
!! | ACATTAGAACTTTCTCATTT+TGG | - | tig0022882:1161-1180 | None:intergenic | 25.0% |
! | AATTATGTAAAATACTCACG+AGG | + | tig0022882:1204-1223 | Msa1402590:intron | 25.0% |
! | AGGATATGATGTATGAAATA+AGG | - | tig0022882:1239-1258 | None:intergenic | 25.0% |
! | TTTGCATATTTAACTGCAAT+TGG | + | tig0022882:1389-1408 | Msa1402590:intron | 25.0% |
ACCAACCAATTTAATCTGTA+GGG | - | tig0022882:427-446 | None:intergenic | 30.0% | |
GAAAAACATAGAATATCGGT+CGG | - | tig0022882:474-493 | None:intergenic | 30.0% | |
AACTGATATAACTGACACAT+GGG | + | tig0022882:537-556 | Msa1402590:CDS | 30.0% | |
! | TTCATTTTACTTGTGCAGTT+TGG | + | tig0022882:657-676 | Msa1402590:intron | 30.0% |
!!! | TTCAATGGTCTTACTTTTTG+TGG | + | tig0022882:1043-1062 | Msa1402590:intron | 30.0% |
! | GAACTTTCTCATTTTGGATT+TGG | - | tig0022882:1155-1174 | None:intergenic | 30.0% |
!!! | CCTCTAGTTTTTTAGTAACT+AGG | - | tig0022882:1259-1278 | None:intergenic | 30.0% |
CCTAGTTACTAAAAAACTAG+AGG | + | tig0022882:1256-1275 | Msa1402590:intron | 30.0% | |
! | ATCTTTCTCGAACCTTTTAT+GGG | + | tig0022882:1442-1461 | Msa1402590:intron | 30.0% |
TTCTTTGTAGCAATGTACAA+TGG | + | tig0022882:1505-1524 | Msa1402590:intron | 30.0% | |
TCTTTGTAGCAATGTACAAT+GGG | + | tig0022882:1506-1525 | Msa1402590:intron | 30.0% | |
ACCAACCAATTTAATCTGTA+GGG | - | tig0022882:427-446 | None:intergenic | 30.0% | |
GAAAAACATAGAATATCGGT+CGG | - | tig0022882:474-493 | None:intergenic | 30.0% | |
AACTGATATAACTGACACAT+GGG | + | tig0022882:537-556 | Msa1402590:CDS | 30.0% | |
! | TTCATTTTACTTGTGCAGTT+TGG | + | tig0022882:657-676 | Msa1402590:intron | 30.0% |
!!! | TTCAATGGTCTTACTTTTTG+TGG | + | tig0022882:1043-1062 | Msa1402590:intron | 30.0% |
! | GAACTTTCTCATTTTGGATT+TGG | - | tig0022882:1155-1174 | None:intergenic | 30.0% |
!!! | CCTCTAGTTTTTTAGTAACT+AGG | - | tig0022882:1259-1278 | None:intergenic | 30.0% |
CCTAGTTACTAAAAAACTAG+AGG | + | tig0022882:1256-1275 | Msa1402590:intron | 30.0% | |
! | ATCTTTCTCGAACCTTTTAT+GGG | + | tig0022882:1442-1461 | Msa1402590:intron | 30.0% |
TTCTTTGTAGCAATGTACAA+TGG | + | tig0022882:1505-1524 | Msa1402590:intron | 30.0% | |
TCTTTGTAGCAATGTACAAT+GGG | + | tig0022882:1506-1525 | Msa1402590:intron | 30.0% | |
AGAAATCGTTCTCAAAGCAA+TGG | + | tig0022882:337-356 | Msa1402590:CDS | 35.0% | |
GAAATCGTTCTCAAAGCAAT+GGG | + | tig0022882:338-357 | Msa1402590:CDS | 35.0% | |
GACGATTACTGAGCTAATTA+AGG | + | tig0022882:382-401 | Msa1402590:CDS | 35.0% | |
GAGTTCCCTACAGATTAAAT+TGG | + | tig0022882:419-438 | Msa1402590:intron | 35.0% | |
TCCCTACAGATTAAATTGGT+TGG | + | tig0022882:423-442 | Msa1402590:intron | 35.0% | |
CACCAACCAATTTAATCTGT+AGG | - | tig0022882:428-447 | None:intergenic | 35.0% | |
!! | GTTTTTCAGAGAAGGATTGT+TGG | + | tig0022882:487-506 | Msa1402590:intron | 35.0% |
CTGCATCAGAACACTATTAT+TGG | + | tig0022882:511-530 | Msa1402590:CDS | 35.0% | |
CAACTGATATAACTGACACA+TGG | + | tig0022882:536-555 | Msa1402590:CDS | 35.0% | |
CAATGAAAACATACGGAAGA+AGG | - | tig0022882:579-598 | None:intergenic | 35.0% | |
TAGTTTATGTGTGCATAGCA+TGG | + | tig0022882:623-642 | Msa1402590:intron | 35.0% | |
AGTTTATGTGTGCATAGCAT+GGG | + | tig0022882:624-643 | Msa1402590:intron | 35.0% | |
TACTTTGTCAAAGAAAGAGC+TGG | + | tig0022882:711-730 | Msa1402590:CDS | 35.0% | |
TAGATGCCTTATCTCTTAAC+AGG | + | tig0022882:814-833 | Msa1402590:intron | 35.0% | |
ACTAAGCCTGTTAAGAGATA+AGG | - | tig0022882:823-842 | None:intergenic | 35.0% | |
! | TTCTGTAAGATTTAGGGTCA+CGG | + | tig0022882:997-1016 | Msa1402590:intron | 35.0% |
! | GATCTTTCTCGAACCTTTTA+TGG | + | tig0022882:1441-1460 | Msa1402590:intron | 35.0% |
CTTTGTAGCAATGTACAATG+GGG | + | tig0022882:1507-1526 | Msa1402590:intron | 35.0% | |
TTTGTAGCAATGTACAATGG+GGG | + | tig0022882:1508-1527 | Msa1402590:intron | 35.0% | |
!! | TATGGAATATGGTGTTGGTT+GGG | + | tig0022882:1531-1550 | Msa1402590:CDS | 35.0% |
AGAAATCGTTCTCAAAGCAA+TGG | + | tig0022882:337-356 | Msa1402590:CDS | 35.0% | |
GAAATCGTTCTCAAAGCAAT+GGG | + | tig0022882:338-357 | Msa1402590:CDS | 35.0% | |
GACGATTACTGAGCTAATTA+AGG | + | tig0022882:382-401 | Msa1402590:CDS | 35.0% | |
GAGTTCCCTACAGATTAAAT+TGG | + | tig0022882:419-438 | Msa1402590:intron | 35.0% | |
TCCCTACAGATTAAATTGGT+TGG | + | tig0022882:423-442 | Msa1402590:intron | 35.0% | |
CACCAACCAATTTAATCTGT+AGG | - | tig0022882:428-447 | None:intergenic | 35.0% | |
!! | GTTTTTCAGAGAAGGATTGT+TGG | + | tig0022882:487-506 | Msa1402590:intron | 35.0% |
CTGCATCAGAACACTATTAT+TGG | + | tig0022882:511-530 | Msa1402590:CDS | 35.0% | |
CAACTGATATAACTGACACA+TGG | + | tig0022882:536-555 | Msa1402590:CDS | 35.0% | |
CAATGAAAACATACGGAAGA+AGG | - | tig0022882:579-598 | None:intergenic | 35.0% | |
TAGTTTATGTGTGCATAGCA+TGG | + | tig0022882:623-642 | Msa1402590:intron | 35.0% | |
AGTTTATGTGTGCATAGCAT+GGG | + | tig0022882:624-643 | Msa1402590:intron | 35.0% | |
TACTTTGTCAAAGAAAGAGC+TGG | + | tig0022882:711-730 | Msa1402590:CDS | 35.0% | |
TAGATGCCTTATCTCTTAAC+AGG | + | tig0022882:814-833 | Msa1402590:intron | 35.0% | |
ACTAAGCCTGTTAAGAGATA+AGG | - | tig0022882:823-842 | None:intergenic | 35.0% | |
! | TTCTGTAAGATTTAGGGTCA+CGG | + | tig0022882:997-1016 | Msa1402590:intron | 35.0% |
! | GATCTTTCTCGAACCTTTTA+TGG | + | tig0022882:1441-1460 | Msa1402590:intron | 35.0% |
CTTTGTAGCAATGTACAATG+GGG | + | tig0022882:1507-1526 | Msa1402590:intron | 35.0% | |
TTTGTAGCAATGTACAATGG+GGG | + | tig0022882:1508-1527 | Msa1402590:intron | 35.0% | |
!! | TATGGAATATGGTGTTGGTT+GGG | + | tig0022882:1531-1550 | Msa1402590:CDS | 35.0% |
ACTGAGCTAATTAAGGTGAG+AGG | + | tig0022882:389-408 | Msa1402590:intron | 40.0% | |
CTGAGCTAATTAAGGTGAGA+GGG | + | tig0022882:390-409 | Msa1402590:intron | 40.0% | |
TCATGAAAGTTCATACCCTG+TGG | - | tig0022882:746-765 | None:intergenic | 40.0% | |
! | CTTACAGAAGTACAATGGCT+AGG | - | tig0022882:986-1005 | None:intergenic | 40.0% |
! | TACAATGGGGGTATGGAATA+TGG | + | tig0022882:1520-1539 | Msa1402590:CDS | 40.0% |
!! | GTATGGAATATGGTGTTGGT+TGG | + | tig0022882:1530-1549 | Msa1402590:CDS | 40.0% |
ACTGAGCTAATTAAGGTGAG+AGG | + | tig0022882:389-408 | Msa1402590:intron | 40.0% | |
CTGAGCTAATTAAGGTGAGA+GGG | + | tig0022882:390-409 | Msa1402590:intron | 40.0% | |
TCATGAAAGTTCATACCCTG+TGG | - | tig0022882:746-765 | None:intergenic | 40.0% | |
! | CTTACAGAAGTACAATGGCT+AGG | - | tig0022882:986-1005 | None:intergenic | 40.0% |
! | TACAATGGGGGTATGGAATA+TGG | + | tig0022882:1520-1539 | Msa1402590:CDS | 40.0% |
!! | GTATGGAATATGGTGTTGGT+TGG | + | tig0022882:1530-1549 | Msa1402590:CDS | 40.0% |
ACATGGGAACCACTTGAAGA+AGG | + | tig0022882:553-572 | Msa1402590:CDS | 45.0% | |
TGAAAGTTCATACCCTGTGG+AGG | - | tig0022882:743-762 | None:intergenic | 45.0% | |
TTGAAACAGAAGGCTCACCA+AGG | + | tig0022882:1298-1317 | Msa1402590:intron | 45.0% | |
AGCAATGTACAATGGGGGTA+TGG | + | tig0022882:1513-1532 | Msa1402590:intron | 45.0% | |
TTGTCGTAACCCAACTGGTT+GGG | - | tig0022882:1638-1657 | None:intergenic | 45.0% | |
ATTGTCGTAACCCAACTGGT+TGG | - | tig0022882:1639-1658 | None:intergenic | 45.0% | |
AACCAGTTGGGTTACGACAA+TGG | + | tig0022882:1638-1657 | Msa1402590:CDS | 45.0% | |
ACATGGGAACCACTTGAAGA+AGG | + | tig0022882:553-572 | Msa1402590:CDS | 45.0% | |
TGAAAGTTCATACCCTGTGG+AGG | - | tig0022882:743-762 | None:intergenic | 45.0% | |
TTGAAACAGAAGGCTCACCA+AGG | + | tig0022882:1298-1317 | Msa1402590:intron | 45.0% | |
AGCAATGTACAATGGGGGTA+TGG | + | tig0022882:1513-1532 | Msa1402590:intron | 45.0% | |
TTGTCGTAACCCAACTGGTT+GGG | - | tig0022882:1638-1657 | None:intergenic | 45.0% | |
ATTGTCGTAACCCAACTGGT+TGG | - | tig0022882:1639-1658 | None:intergenic | 45.0% | |
AACCAGTTGGGTTACGACAA+TGG | + | tig0022882:1638-1657 | Msa1402590:CDS | 45.0% | |
GGAAGAAGGCCTTCTTCAAG+TGG | - | tig0022882:565-584 | None:intergenic | 50.0% | |
AGCTGGATACATCCTCCACA+GGG | + | tig0022882:728-747 | Msa1402590:CDS | 50.0% | |
! | GGGGGTATGGAATATGGTGT+TGG | + | tig0022882:1526-1545 | Msa1402590:CDS | 50.0% |
!! | TATGGTGTTGGTTGGGATCG+TGG | + | tig0022882:1538-1557 | Msa1402590:CDS | 50.0% |
!! | ATGGTGTTGGTTGGGATCGT+GGG | + | tig0022882:1539-1558 | Msa1402590:CDS | 50.0% |
GCTATGTTGCCCAACCAGTT+GGG | + | tig0022882:1626-1645 | Msa1402590:CDS | 50.0% | |
CACCATTGTCGTAACCCAAC+TGG | - | tig0022882:1643-1662 | None:intergenic | 50.0% | |
GGAAGAAGGCCTTCTTCAAG+TGG | - | tig0022882:565-584 | None:intergenic | 50.0% | |
AGCTGGATACATCCTCCACA+GGG | + | tig0022882:728-747 | Msa1402590:CDS | 50.0% | |
! | GGGGGTATGGAATATGGTGT+TGG | + | tig0022882:1526-1545 | Msa1402590:CDS | 50.0% |
!! | TATGGTGTTGGTTGGGATCG+TGG | + | tig0022882:1538-1557 | Msa1402590:CDS | 50.0% |
!! | ATGGTGTTGGTTGGGATCGT+GGG | + | tig0022882:1539-1558 | Msa1402590:CDS | 50.0% |
GCTATGTTGCCCAACCAGTT+GGG | + | tig0022882:1626-1645 | Msa1402590:CDS | 50.0% | |
CACCATTGTCGTAACCCAAC+TGG | - | tig0022882:1643-1662 | None:intergenic | 50.0% | |
GAGCTGGATACATCCTCCAC+AGG | + | tig0022882:727-746 | Msa1402590:CDS | 55.0% | |
CTCACCAAGGATGCGAGGAA+GGG | + | tig0022882:1311-1330 | Msa1402590:CDS | 55.0% | |
TCACCAAGGATGCGAGGAAG+GGG | + | tig0022882:1312-1331 | Msa1402590:CDS | 55.0% | |
AAGGGGACGTGGTCATGGAA+GGG | + | tig0022882:1329-1348 | Msa1402590:CDS | 55.0% | |
ACGTGGTCATGGAAGGGGAA+GGG | + | tig0022882:1335-1354 | Msa1402590:CDS | 55.0% | |
GGCTATGTTGCCCAACCAGT+TGG | + | tig0022882:1625-1644 | Msa1402590:CDS | 55.0% | |
GAGCTGGATACATCCTCCAC+AGG | + | tig0022882:727-746 | Msa1402590:CDS | 55.0% | |
CTCACCAAGGATGCGAGGAA+GGG | + | tig0022882:1311-1330 | Msa1402590:CDS | 55.0% | |
TCACCAAGGATGCGAGGAAG+GGG | + | tig0022882:1312-1331 | Msa1402590:CDS | 55.0% | |
AAGGGGACGTGGTCATGGAA+GGG | + | tig0022882:1329-1348 | Msa1402590:CDS | 55.0% | |
ACGTGGTCATGGAAGGGGAA+GGG | + | tig0022882:1335-1354 | Msa1402590:CDS | 55.0% | |
GGCTATGTTGCCCAACCAGT+TGG | + | tig0022882:1625-1644 | Msa1402590:CDS | 55.0% | |
GAAGGCTCACCAAGGATGCG+AGG | + | tig0022882:1306-1325 | Msa1402590:intron | 60.0% | |
GCTCACCAAGGATGCGAGGA+AGG | + | tig0022882:1310-1329 | Msa1402590:CDS | 60.0% | |
GAAGGGGACGTGGTCATGGA+AGG | + | tig0022882:1328-1347 | Msa1402590:CDS | 60.0% | |
AGGGGACGTGGTCATGGAAG+GGG | + | tig0022882:1330-1349 | Msa1402590:CDS | 60.0% | |
GACGTGGTCATGGAAGGGGA+AGG | + | tig0022882:1334-1353 | Msa1402590:CDS | 60.0% | |
CGTGGTCATGGAAGGGGAAG+GGG | + | tig0022882:1336-1355 | Msa1402590:CDS | 60.0% | |
CATGGAAGGGGAAGGGGAAG+AGG | + | tig0022882:1342-1361 | Msa1402590:CDS | 60.0% | |
CATAGCCACGTCCTTGTCCC+CGG | - | tig0022882:1612-1631 | None:intergenic | 60.0% | |
GAAGGCTCACCAAGGATGCG+AGG | + | tig0022882:1306-1325 | Msa1402590:intron | 60.0% | |
GCTCACCAAGGATGCGAGGA+AGG | + | tig0022882:1310-1329 | Msa1402590:CDS | 60.0% | |
GAAGGGGACGTGGTCATGGA+AGG | + | tig0022882:1328-1347 | Msa1402590:CDS | 60.0% | |
AGGGGACGTGGTCATGGAAG+GGG | + | tig0022882:1330-1349 | Msa1402590:CDS | 60.0% | |
GACGTGGTCATGGAAGGGGA+AGG | + | tig0022882:1334-1353 | Msa1402590:CDS | 60.0% | |
CGTGGTCATGGAAGGGGAAG+GGG | + | tig0022882:1336-1355 | Msa1402590:CDS | 60.0% | |
CATGGAAGGGGAAGGGGAAG+AGG | + | tig0022882:1342-1361 | Msa1402590:CDS | 60.0% | |
CATAGCCACGTCCTTGTCCC+CGG | - | tig0022882:1612-1631 | None:intergenic | 60.0% | |
CGTCCCCTTCCTCGCATCCT+TGG | - | tig0022882:1318-1337 | None:intergenic | 65.0% | |
AGGATGCGAGGAAGGGGACG+TGG | + | tig0022882:1318-1337 | Msa1402590:CDS | 65.0% | |
CGAGGAAGGGGACGTGGTCA+TGG | + | tig0022882:1324-1343 | Msa1402590:CDS | 65.0% | |
AGGGGAAGGGGAAGAGGCAG+AGG | + | tig0022882:1348-1367 | Msa1402590:CDS | 65.0% | |
GTTGGTTGGGATCGTGGGCG+TGG | + | tig0022882:1544-1563 | Msa1402590:CDS | 65.0% | |
TGGGATCGTGGGCGTGGCTA+TGG | + | tig0022882:1550-1569 | Msa1402590:CDS | 65.0% | |
GATCGTGGGCGTGGCTATGG+TGG | + | tig0022882:1553-1572 | Msa1402590:CDS | 65.0% | |
! | GGAAGGCACGGTCCCATGCA+CGG | - | tig0022882:1591-1610 | None:intergenic | 65.0% |
GTGCATGGGACCGTGCCTTC+CGG | + | tig0022882:1590-1609 | Msa1402590:CDS | 65.0% | |
TGCATGGGACCGTGCCTTCC+GGG | + | tig0022882:1591-1610 | Msa1402590:CDS | 65.0% | |
GTCCTTGTCCCCGGAAGGCA+CGG | - | tig0022882:1603-1622 | None:intergenic | 65.0% | |
CGTCCCCTTCCTCGCATCCT+TGG | - | tig0022882:1318-1337 | None:intergenic | 65.0% | |
AGGATGCGAGGAAGGGGACG+TGG | + | tig0022882:1318-1337 | Msa1402590:CDS | 65.0% | |
CGAGGAAGGGGACGTGGTCA+TGG | + | tig0022882:1324-1343 | Msa1402590:CDS | 65.0% | |
AGGGGAAGGGGAAGAGGCAG+AGG | + | tig0022882:1348-1367 | Msa1402590:CDS | 65.0% | |
GTTGGTTGGGATCGTGGGCG+TGG | + | tig0022882:1544-1563 | Msa1402590:CDS | 65.0% | |
TGGGATCGTGGGCGTGGCTA+TGG | + | tig0022882:1550-1569 | Msa1402590:CDS | 65.0% | |
GATCGTGGGCGTGGCTATGG+TGG | + | tig0022882:1553-1572 | Msa1402590:CDS | 65.0% | |
! | GGAAGGCACGGTCCCATGCA+CGG | - | tig0022882:1591-1610 | None:intergenic | 65.0% |
GTGCATGGGACCGTGCCTTC+CGG | + | tig0022882:1590-1609 | Msa1402590:CDS | 65.0% | |
TGCATGGGACCGTGCCTTCC+GGG | + | tig0022882:1591-1610 | Msa1402590:CDS | 65.0% | |
GTCCTTGTCCCCGGAAGGCA+CGG | - | tig0022882:1603-1622 | None:intergenic | 65.0% | |
GGCGTGGCTATGGTGGCCGA+GGG | + | tig0022882:1560-1579 | Msa1402590:CDS | 70.0% | |
GCATGGGACCGTGCCTTCCG+GGG | + | tig0022882:1592-1611 | Msa1402590:CDS | 70.0% | |
GACCGTGCCTTCCGGGGACA+AGG | + | tig0022882:1598-1617 | Msa1402590:CDS | 70.0% | |
GCCTTCCGGGGACAAGGACG+TGG | + | tig0022882:1604-1623 | Msa1402590:CDS | 70.0% | |
GCCACGTCCTTGTCCCCGGA+AGG | - | tig0022882:1608-1627 | None:intergenic | 70.0% | |
GGCGTGGCTATGGTGGCCGA+GGG | + | tig0022882:1560-1579 | Msa1402590:CDS | 70.0% | |
GCATGGGACCGTGCCTTCCG+GGG | + | tig0022882:1592-1611 | Msa1402590:CDS | 70.0% | |
GACCGTGCCTTCCGGGGACA+AGG | + | tig0022882:1598-1617 | Msa1402590:CDS | 70.0% | |
GCCTTCCGGGGACAAGGACG+TGG | + | tig0022882:1604-1623 | Msa1402590:CDS | 70.0% | |
GCCACGTCCTTGTCCCCGGA+AGG | - | tig0022882:1608-1627 | None:intergenic | 70.0% | |
GGGCGTGGCTATGGTGGCCG+AGG | + | tig0022882:1559-1578 | Msa1402590:CDS | 75.0% | |
GGCTATGGTGGCCGAGGGCG+TGG | + | tig0022882:1565-1584 | Msa1402590:CDS | 75.0% | |
CCCATGCACGGCCACGCCCT+CGG | - | tig0022882:1579-1598 | None:intergenic | 75.0% | |
! | CCGAGGGCGTGGCCGTGCAT+GGG | + | tig0022882:1576-1595 | Msa1402590:CDS | 75.0% |
GGGCGTGGCTATGGTGGCCG+AGG | + | tig0022882:1559-1578 | Msa1402590:CDS | 75.0% | |
GGCTATGGTGGCCGAGGGCG+TGG | + | tig0022882:1565-1584 | Msa1402590:CDS | 75.0% | |
CCCATGCACGGCCACGCCCT+CGG | - | tig0022882:1579-1598 | None:intergenic | 75.0% | |
! | CCGAGGGCGTGGCCGTGCAT+GGG | + | tig0022882:1576-1595 | Msa1402590:CDS | 75.0% |
!! | GCCGAGGGCGTGGCCGTGCA+TGG | + | tig0022882:1575-1594 | Msa1402590:CDS | 80.0% |
!! | GCCGAGGGCGTGGCCGTGCA+TGG | + | tig0022882:1575-1594 | Msa1402590:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0022882 | gene | 326 | 1663 | 326 | ID=Msa1402590;Name=Msa1402590 |
tig0022882 | mRNA | 326 | 1663 | 326 | ID=Msa1402590-mRNA-1;Parent=Msa1402590;Name=Msa1402590-mRNA-1;_AED=0.40;_eAED=0.43;_QI=0|0|0|0.83|1|1|6|0|152 |
tig0022882 | exon | 326 | 403 | 326 | ID=Msa1402590-mRNA-1:exon:19039;Parent=Msa1402590-mRNA-1 |
tig0022882 | exon | 496 | 584 | 496 | ID=Msa1402590-mRNA-1:exon:19040;Parent=Msa1402590-mRNA-1 |
tig0022882 | exon | 675 | 749 | 675 | ID=Msa1402590-mRNA-1:exon:19041;Parent=Msa1402590-mRNA-1 |
tig0022882 | exon | 836 | 840 | 836 | ID=Msa1402590-mRNA-1:exon:19042;Parent=Msa1402590-mRNA-1 |
tig0022882 | exon | 1307 | 1369 | 1307 | ID=Msa1402590-mRNA-1:exon:19043;Parent=Msa1402590-mRNA-1 |
tig0022882 | exon | 1515 | 1663 | 1515 | ID=Msa1402590-mRNA-1:exon:19044;Parent=Msa1402590-mRNA-1 |
tig0022882 | CDS | 326 | 403 | 326 | ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1 |
tig0022882 | CDS | 496 | 584 | 496 | ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1 |
tig0022882 | CDS | 675 | 749 | 675 | ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1 |
tig0022882 | CDS | 836 | 840 | 836 | ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1 |
tig0022882 | CDS | 1307 | 1369 | 1307 | ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1 |
tig0022882 | CDS | 1515 | 1663 | 1515 | ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1 |
Gene Sequence |
Protein sequence |