AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1402590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402590 MtrunA17_Chr3g0129501 77.778 171 19 1 1 152 15 185 1.21e-56 176
Msa1402590 MtrunA17_Chr3g0129471 82.635 167 10 1 1 148 15 181 4.18e-55 172
Msa1402590 MtrunA17_Chr3g0129481 77.273 132 10 2 1 112 15 146 1.19e-49 158
Msa1402590 MtrunA17_Chr7g0237631 50.435 115 52 2 1 111 43 156 3.60e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402590 AT1G76010.2 83.133 83 14 0 1 83 43 125 4.36e-41 140
Msa1402590 AT1G76010.1 83.133 83 14 0 1 83 43 125 4.36e-41 140
Msa1402590 AT1G20220.1 75.309 81 20 0 3 83 45 125 2.92e-36 127
Msa1402590 AT3G07030.2 50.459 109 53 1 1 108 43 151 1.18e-29 111
Msa1402590 AT3G07030.3 50.459 109 53 1 1 108 43 151 1.18e-29 111
Msa1402590 AT3G07030.4 50.459 109 53 1 1 108 43 151 1.30e-29 111
Msa1402590 AT3G07030.1 50.459 109 53 1 1 108 43 151 3.18e-29 110
Msa1402590 AT3G07030.5 50.459 109 53 1 1 108 43 151 8.89e-29 109

Find 61 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATGGGACCGTGCCTTCC+GGG 0.255304 tig0022882:+1591 Msa1402590:CDS
CTGCATCAGAACACTATTAT+TGG 0.280228 tig0022882:+511 Msa1402590:CDS
AGGGGAAGGGGAAGAGGCAG+AGG 0.291828 tig0022882:+1348 Msa1402590:CDS
GTGCATGGGACCGTGCCTTC+CGG 0.325746 tig0022882:+1590 Msa1402590:CDS
GACGATTACTGAGCTAATTA+AGG 0.344294 tig0022882:+382 Msa1402590:CDS
GCCGAGGGCGTGGCCGTGCA+TGG 0.353826 tig0022882:+1575 Msa1402590:CDS
CGTGGTCATGGAAGGGGAAG+GGG 0.358028 tig0022882:+1336 Msa1402590:CDS
CATGGAAGGGGAAGGGGAAG+AGG 0.385120 tig0022882:+1342 Msa1402590:CDS
CGTCCCCTTCCTCGCATCCT+TGG 0.392491 tig0022882:-1315 None:intergenic
TGGGATCGTGGGCGTGGCTA+TGG 0.404622 tig0022882:+1550 Msa1402590:CDS
TCTTTGTAGCAATGTACAAT+GGG 0.415329 tig0022882:+1506 Msa1402590:intron
AGGGGACGTGGTCATGGAAG+GGG 0.416336 tig0022882:+1330 Msa1402590:CDS
CACCATTGTCGTAACCCAAC+TGG 0.418318 tig0022882:-1640 None:intergenic
TATGGAATATGGTGTTGGTT+GGG 0.418838 tig0022882:+1531 Msa1402590:CDS
GGCTATGGTGGCCGAGGGCG+TGG 0.425853 tig0022882:+1565 Msa1402590:CDS
CCCATGCACGGCCACGCCCT+CGG 0.440800 tig0022882:-1576 None:intergenic
GGGCGTGGCTATGGTGGCCG+AGG 0.442600 tig0022882:+1559 Msa1402590:CDS
GGCTATGTTGCCCAACCAGT+TGG 0.448263 tig0022882:+1625 Msa1402590:CDS
TATGGTGTTGGTTGGGATCG+TGG 0.457141 tig0022882:+1538 Msa1402590:CDS
TTGTCGTAACCCAACTGGTT+GGG 0.464326 tig0022882:-1635 None:intergenic
GAAGGGGACGTGGTCATGGA+AGG 0.470202 tig0022882:+1328 Msa1402590:CDS
CGAGGAAGGGGACGTGGTCA+TGG 0.475479 tig0022882:+1324 Msa1402590:CDS
GTTGGTTGGGATCGTGGGCG+TGG 0.477701 tig0022882:+1544 Msa1402590:CDS
GTCCTTGTCCCCGGAAGGCA+CGG 0.496199 tig0022882:-1600 None:intergenic
CCGAGGGCGTGGCCGTGCAT+GGG 0.496548 tig0022882:+1576 Msa1402590:CDS
TACTTTGTCAAAGAAAGAGC+TGG 0.498781 tig0022882:+711 Msa1402590:CDS
ATGGTGTTGGTTGGGATCGT+GGG 0.508635 tig0022882:+1539 Msa1402590:CDS
GCTCACCAAGGATGCGAGGA+AGG 0.509460 tig0022882:+1310 Msa1402590:CDS
CAATGAAAACATACGGAAGA+AGG 0.509927 tig0022882:-576 None:intergenic
GCCTTCCGGGGACAAGGACG+TGG 0.511407 tig0022882:+1604 Msa1402590:CDS
ACGTGGTCATGGAAGGGGAA+GGG 0.511503 tig0022882:+1335 Msa1402590:CDS
TTCTTTGTAGCAATGTACAA+TGG 0.511866 tig0022882:+1505 Msa1402590:intron
TCACCAAGGATGCGAGGAAG+GGG 0.513276 tig0022882:+1312 Msa1402590:CDS
GTATGGAATATGGTGTTGGT+TGG 0.515952 tig0022882:+1530 Msa1402590:CDS
GCTATGTTGCCCAACCAGTT+GGG 0.516803 tig0022882:+1626 Msa1402590:CDS
GAAATCGTTCTCAAAGCAAT+GGG 0.517050 tig0022882:+338 Msa1402590:CDS
AGGATGCGAGGAAGGGGACG+TGG 0.528783 tig0022882:+1318 Msa1402590:CDS
GACCGTGCCTTCCGGGGACA+AGG 0.537309 tig0022882:+1598 Msa1402590:CDS
AAGGGGACGTGGTCATGGAA+GGG 0.539214 tig0022882:+1329 Msa1402590:CDS
GATCGTGGGCGTGGCTATGG+TGG 0.544364 tig0022882:+1553 Msa1402590:CDS
GAGCTGGATACATCCTCCAC+AGG 0.550506 tig0022882:+727 Msa1402590:CDS
AGAAATCGTTCTCAAAGCAA+TGG 0.552556 tig0022882:+337 Msa1402590:CDS
CTCACCAAGGATGCGAGGAA+GGG 0.554843 tig0022882:+1311 Msa1402590:CDS
CATAGCCACGTCCTTGTCCC+CGG 0.557943 tig0022882:-1609 None:intergenic
GGCGTGGCTATGGTGGCCGA+GGG 0.561420 tig0022882:+1560 Msa1402590:CDS
CAACTGATATAACTGACACA+TGG 0.565866 tig0022882:+536 Msa1402590:CDS
GGAAGGCACGGTCCCATGCA+CGG 0.571130 tig0022882:-1588 None:intergenic
ATTGTCGTAACCCAACTGGT+TGG 0.572944 tig0022882:-1636 None:intergenic
ACATGGGAACCACTTGAAGA+AGG 0.580775 tig0022882:+553 Msa1402590:CDS
GGAAGAAGGCCTTCTTCAAG+TGG 0.583553 tig0022882:-562 None:intergenic
GCCACGTCCTTGTCCCCGGA+AGG 0.587486 tig0022882:-1605 None:intergenic
GACGTGGTCATGGAAGGGGA+AGG 0.589407 tig0022882:+1334 Msa1402590:CDS
GCATGGGACCGTGCCTTCCG+GGG 0.596851 tig0022882:+1592 Msa1402590:CDS
AACCAGTTGGGTTACGACAA+TGG 0.598146 tig0022882:+1638 Msa1402590:CDS
AACTGATATAACTGACACAT+GGG 0.600887 tig0022882:+537 Msa1402590:CDS
GAAGGCTCACCAAGGATGCG+AGG 0.637231 tig0022882:+1306 Msa1402590:intron
TGAAAGTTCATACCCTGTGG+AGG 0.649730 tig0022882:-740 None:intergenic
CTTTGTAGCAATGTACAATG+GGG 0.653996 tig0022882:+1507 Msa1402590:intron
TTTGTAGCAATGTACAATGG+GGG 0.656698 tig0022882:+1508 Msa1402590:intron
TTGAAACAGAAGGCTCACCA+AGG 0.662596 tig0022882:+1298 Msa1402590:intron
AGCTGGATACATCCTCCACA+GGG 0.668533 tig0022882:+728 Msa1402590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACATAATTTAATCAAA+AGG - tig0022882:1196-1215 None:intergenic 10.0%
!!! TTTTACATAATTTAATCAAA+AGG - tig0022882:1196-1215 None:intergenic 10.0%
!! TAAATATATAGTAACTTCAA+TGG + tig0022882:1028-1047 Msa1402590:intron 15.0%
!! TAAATATATAGTAACTTCAA+TGG + tig0022882:1028-1047 Msa1402590:intron 15.0%
!!! ATTGTATTTTTTGAAACAGA+AGG + tig0022882:1288-1307 Msa1402590:intron 20.0%
!!! ATTTTAAAAGAACCCATAAA+AGG - tig0022882:1457-1476 None:intergenic 20.0%
!!! ATTGTATTTTTTGAAACAGA+AGG + tig0022882:1288-1307 Msa1402590:intron 20.0%
!!! ATTTTAAAAGAACCCATAAA+AGG - tig0022882:1457-1476 None:intergenic 20.0%
!! CTCTGAAAAACATAGAATAT+CGG - tig0022882:478-497 None:intergenic 25.0%
!!! TATTCTATGTTTTTCAGAGA+AGG + tig0022882:479-498 Msa1402590:intron 25.0%
! GTGAAAACAATGAAAACATA+CGG - tig0022882:586-605 None:intergenic 25.0%
!! TAAATCTTACAGAAGTACAA+TGG - tig0022882:991-1010 None:intergenic 25.0%
! ATTGTACTTCTGTAAGATTT+AGG + tig0022882:990-1009 Msa1402590:intron 25.0%
! TTGTACTTCTGTAAGATTTA+GGG + tig0022882:991-1010 Msa1402590:intron 25.0%
!! ACATTAGAACTTTCTCATTT+TGG - tig0022882:1161-1180 None:intergenic 25.0%
! AATTATGTAAAATACTCACG+AGG + tig0022882:1204-1223 Msa1402590:intron 25.0%
! AGGATATGATGTATGAAATA+AGG - tig0022882:1239-1258 None:intergenic 25.0%
! TTTGCATATTTAACTGCAAT+TGG + tig0022882:1389-1408 Msa1402590:intron 25.0%
!! CTCTGAAAAACATAGAATAT+CGG - tig0022882:478-497 None:intergenic 25.0%
!!! TATTCTATGTTTTTCAGAGA+AGG + tig0022882:479-498 Msa1402590:intron 25.0%
! GTGAAAACAATGAAAACATA+CGG - tig0022882:586-605 None:intergenic 25.0%
!! TAAATCTTACAGAAGTACAA+TGG - tig0022882:991-1010 None:intergenic 25.0%
! ATTGTACTTCTGTAAGATTT+AGG + tig0022882:990-1009 Msa1402590:intron 25.0%
! TTGTACTTCTGTAAGATTTA+GGG + tig0022882:991-1010 Msa1402590:intron 25.0%
!! ACATTAGAACTTTCTCATTT+TGG - tig0022882:1161-1180 None:intergenic 25.0%
! AATTATGTAAAATACTCACG+AGG + tig0022882:1204-1223 Msa1402590:intron 25.0%
! AGGATATGATGTATGAAATA+AGG - tig0022882:1239-1258 None:intergenic 25.0%
! TTTGCATATTTAACTGCAAT+TGG + tig0022882:1389-1408 Msa1402590:intron 25.0%
ACCAACCAATTTAATCTGTA+GGG - tig0022882:427-446 None:intergenic 30.0%
GAAAAACATAGAATATCGGT+CGG - tig0022882:474-493 None:intergenic 30.0%
AACTGATATAACTGACACAT+GGG + tig0022882:537-556 Msa1402590:CDS 30.0%
! TTCATTTTACTTGTGCAGTT+TGG + tig0022882:657-676 Msa1402590:intron 30.0%
!!! TTCAATGGTCTTACTTTTTG+TGG + tig0022882:1043-1062 Msa1402590:intron 30.0%
! GAACTTTCTCATTTTGGATT+TGG - tig0022882:1155-1174 None:intergenic 30.0%
!!! CCTCTAGTTTTTTAGTAACT+AGG - tig0022882:1259-1278 None:intergenic 30.0%
CCTAGTTACTAAAAAACTAG+AGG + tig0022882:1256-1275 Msa1402590:intron 30.0%
! ATCTTTCTCGAACCTTTTAT+GGG + tig0022882:1442-1461 Msa1402590:intron 30.0%
TTCTTTGTAGCAATGTACAA+TGG + tig0022882:1505-1524 Msa1402590:intron 30.0%
TCTTTGTAGCAATGTACAAT+GGG + tig0022882:1506-1525 Msa1402590:intron 30.0%
ACCAACCAATTTAATCTGTA+GGG - tig0022882:427-446 None:intergenic 30.0%
GAAAAACATAGAATATCGGT+CGG - tig0022882:474-493 None:intergenic 30.0%
AACTGATATAACTGACACAT+GGG + tig0022882:537-556 Msa1402590:CDS 30.0%
! TTCATTTTACTTGTGCAGTT+TGG + tig0022882:657-676 Msa1402590:intron 30.0%
!!! TTCAATGGTCTTACTTTTTG+TGG + tig0022882:1043-1062 Msa1402590:intron 30.0%
! GAACTTTCTCATTTTGGATT+TGG - tig0022882:1155-1174 None:intergenic 30.0%
!!! CCTCTAGTTTTTTAGTAACT+AGG - tig0022882:1259-1278 None:intergenic 30.0%
CCTAGTTACTAAAAAACTAG+AGG + tig0022882:1256-1275 Msa1402590:intron 30.0%
! ATCTTTCTCGAACCTTTTAT+GGG + tig0022882:1442-1461 Msa1402590:intron 30.0%
TTCTTTGTAGCAATGTACAA+TGG + tig0022882:1505-1524 Msa1402590:intron 30.0%
TCTTTGTAGCAATGTACAAT+GGG + tig0022882:1506-1525 Msa1402590:intron 30.0%
AGAAATCGTTCTCAAAGCAA+TGG + tig0022882:337-356 Msa1402590:CDS 35.0%
GAAATCGTTCTCAAAGCAAT+GGG + tig0022882:338-357 Msa1402590:CDS 35.0%
GACGATTACTGAGCTAATTA+AGG + tig0022882:382-401 Msa1402590:CDS 35.0%
GAGTTCCCTACAGATTAAAT+TGG + tig0022882:419-438 Msa1402590:intron 35.0%
TCCCTACAGATTAAATTGGT+TGG + tig0022882:423-442 Msa1402590:intron 35.0%
CACCAACCAATTTAATCTGT+AGG - tig0022882:428-447 None:intergenic 35.0%
!! GTTTTTCAGAGAAGGATTGT+TGG + tig0022882:487-506 Msa1402590:intron 35.0%
CTGCATCAGAACACTATTAT+TGG + tig0022882:511-530 Msa1402590:CDS 35.0%
CAACTGATATAACTGACACA+TGG + tig0022882:536-555 Msa1402590:CDS 35.0%
CAATGAAAACATACGGAAGA+AGG - tig0022882:579-598 None:intergenic 35.0%
TAGTTTATGTGTGCATAGCA+TGG + tig0022882:623-642 Msa1402590:intron 35.0%
AGTTTATGTGTGCATAGCAT+GGG + tig0022882:624-643 Msa1402590:intron 35.0%
TACTTTGTCAAAGAAAGAGC+TGG + tig0022882:711-730 Msa1402590:CDS 35.0%
TAGATGCCTTATCTCTTAAC+AGG + tig0022882:814-833 Msa1402590:intron 35.0%
ACTAAGCCTGTTAAGAGATA+AGG - tig0022882:823-842 None:intergenic 35.0%
! TTCTGTAAGATTTAGGGTCA+CGG + tig0022882:997-1016 Msa1402590:intron 35.0%
! GATCTTTCTCGAACCTTTTA+TGG + tig0022882:1441-1460 Msa1402590:intron 35.0%
CTTTGTAGCAATGTACAATG+GGG + tig0022882:1507-1526 Msa1402590:intron 35.0%
TTTGTAGCAATGTACAATGG+GGG + tig0022882:1508-1527 Msa1402590:intron 35.0%
!! TATGGAATATGGTGTTGGTT+GGG + tig0022882:1531-1550 Msa1402590:CDS 35.0%
AGAAATCGTTCTCAAAGCAA+TGG + tig0022882:337-356 Msa1402590:CDS 35.0%
GAAATCGTTCTCAAAGCAAT+GGG + tig0022882:338-357 Msa1402590:CDS 35.0%
GACGATTACTGAGCTAATTA+AGG + tig0022882:382-401 Msa1402590:CDS 35.0%
GAGTTCCCTACAGATTAAAT+TGG + tig0022882:419-438 Msa1402590:intron 35.0%
TCCCTACAGATTAAATTGGT+TGG + tig0022882:423-442 Msa1402590:intron 35.0%
CACCAACCAATTTAATCTGT+AGG - tig0022882:428-447 None:intergenic 35.0%
!! GTTTTTCAGAGAAGGATTGT+TGG + tig0022882:487-506 Msa1402590:intron 35.0%
CTGCATCAGAACACTATTAT+TGG + tig0022882:511-530 Msa1402590:CDS 35.0%
CAACTGATATAACTGACACA+TGG + tig0022882:536-555 Msa1402590:CDS 35.0%
CAATGAAAACATACGGAAGA+AGG - tig0022882:579-598 None:intergenic 35.0%
TAGTTTATGTGTGCATAGCA+TGG + tig0022882:623-642 Msa1402590:intron 35.0%
AGTTTATGTGTGCATAGCAT+GGG + tig0022882:624-643 Msa1402590:intron 35.0%
TACTTTGTCAAAGAAAGAGC+TGG + tig0022882:711-730 Msa1402590:CDS 35.0%
TAGATGCCTTATCTCTTAAC+AGG + tig0022882:814-833 Msa1402590:intron 35.0%
ACTAAGCCTGTTAAGAGATA+AGG - tig0022882:823-842 None:intergenic 35.0%
! TTCTGTAAGATTTAGGGTCA+CGG + tig0022882:997-1016 Msa1402590:intron 35.0%
! GATCTTTCTCGAACCTTTTA+TGG + tig0022882:1441-1460 Msa1402590:intron 35.0%
CTTTGTAGCAATGTACAATG+GGG + tig0022882:1507-1526 Msa1402590:intron 35.0%
TTTGTAGCAATGTACAATGG+GGG + tig0022882:1508-1527 Msa1402590:intron 35.0%
!! TATGGAATATGGTGTTGGTT+GGG + tig0022882:1531-1550 Msa1402590:CDS 35.0%
ACTGAGCTAATTAAGGTGAG+AGG + tig0022882:389-408 Msa1402590:intron 40.0%
CTGAGCTAATTAAGGTGAGA+GGG + tig0022882:390-409 Msa1402590:intron 40.0%
TCATGAAAGTTCATACCCTG+TGG - tig0022882:746-765 None:intergenic 40.0%
! CTTACAGAAGTACAATGGCT+AGG - tig0022882:986-1005 None:intergenic 40.0%
! TACAATGGGGGTATGGAATA+TGG + tig0022882:1520-1539 Msa1402590:CDS 40.0%
!! GTATGGAATATGGTGTTGGT+TGG + tig0022882:1530-1549 Msa1402590:CDS 40.0%
ACTGAGCTAATTAAGGTGAG+AGG + tig0022882:389-408 Msa1402590:intron 40.0%
CTGAGCTAATTAAGGTGAGA+GGG + tig0022882:390-409 Msa1402590:intron 40.0%
TCATGAAAGTTCATACCCTG+TGG - tig0022882:746-765 None:intergenic 40.0%
! CTTACAGAAGTACAATGGCT+AGG - tig0022882:986-1005 None:intergenic 40.0%
! TACAATGGGGGTATGGAATA+TGG + tig0022882:1520-1539 Msa1402590:CDS 40.0%
!! GTATGGAATATGGTGTTGGT+TGG + tig0022882:1530-1549 Msa1402590:CDS 40.0%
ACATGGGAACCACTTGAAGA+AGG + tig0022882:553-572 Msa1402590:CDS 45.0%
TGAAAGTTCATACCCTGTGG+AGG - tig0022882:743-762 None:intergenic 45.0%
TTGAAACAGAAGGCTCACCA+AGG + tig0022882:1298-1317 Msa1402590:intron 45.0%
AGCAATGTACAATGGGGGTA+TGG + tig0022882:1513-1532 Msa1402590:intron 45.0%
TTGTCGTAACCCAACTGGTT+GGG - tig0022882:1638-1657 None:intergenic 45.0%
ATTGTCGTAACCCAACTGGT+TGG - tig0022882:1639-1658 None:intergenic 45.0%
AACCAGTTGGGTTACGACAA+TGG + tig0022882:1638-1657 Msa1402590:CDS 45.0%
ACATGGGAACCACTTGAAGA+AGG + tig0022882:553-572 Msa1402590:CDS 45.0%
TGAAAGTTCATACCCTGTGG+AGG - tig0022882:743-762 None:intergenic 45.0%
TTGAAACAGAAGGCTCACCA+AGG + tig0022882:1298-1317 Msa1402590:intron 45.0%
AGCAATGTACAATGGGGGTA+TGG + tig0022882:1513-1532 Msa1402590:intron 45.0%
TTGTCGTAACCCAACTGGTT+GGG - tig0022882:1638-1657 None:intergenic 45.0%
ATTGTCGTAACCCAACTGGT+TGG - tig0022882:1639-1658 None:intergenic 45.0%
AACCAGTTGGGTTACGACAA+TGG + tig0022882:1638-1657 Msa1402590:CDS 45.0%
GGAAGAAGGCCTTCTTCAAG+TGG - tig0022882:565-584 None:intergenic 50.0%
AGCTGGATACATCCTCCACA+GGG + tig0022882:728-747 Msa1402590:CDS 50.0%
! GGGGGTATGGAATATGGTGT+TGG + tig0022882:1526-1545 Msa1402590:CDS 50.0%
!! TATGGTGTTGGTTGGGATCG+TGG + tig0022882:1538-1557 Msa1402590:CDS 50.0%
!! ATGGTGTTGGTTGGGATCGT+GGG + tig0022882:1539-1558 Msa1402590:CDS 50.0%
GCTATGTTGCCCAACCAGTT+GGG + tig0022882:1626-1645 Msa1402590:CDS 50.0%
CACCATTGTCGTAACCCAAC+TGG - tig0022882:1643-1662 None:intergenic 50.0%
GGAAGAAGGCCTTCTTCAAG+TGG - tig0022882:565-584 None:intergenic 50.0%
AGCTGGATACATCCTCCACA+GGG + tig0022882:728-747 Msa1402590:CDS 50.0%
! GGGGGTATGGAATATGGTGT+TGG + tig0022882:1526-1545 Msa1402590:CDS 50.0%
!! TATGGTGTTGGTTGGGATCG+TGG + tig0022882:1538-1557 Msa1402590:CDS 50.0%
!! ATGGTGTTGGTTGGGATCGT+GGG + tig0022882:1539-1558 Msa1402590:CDS 50.0%
GCTATGTTGCCCAACCAGTT+GGG + tig0022882:1626-1645 Msa1402590:CDS 50.0%
CACCATTGTCGTAACCCAAC+TGG - tig0022882:1643-1662 None:intergenic 50.0%
GAGCTGGATACATCCTCCAC+AGG + tig0022882:727-746 Msa1402590:CDS 55.0%
CTCACCAAGGATGCGAGGAA+GGG + tig0022882:1311-1330 Msa1402590:CDS 55.0%
TCACCAAGGATGCGAGGAAG+GGG + tig0022882:1312-1331 Msa1402590:CDS 55.0%
AAGGGGACGTGGTCATGGAA+GGG + tig0022882:1329-1348 Msa1402590:CDS 55.0%
ACGTGGTCATGGAAGGGGAA+GGG + tig0022882:1335-1354 Msa1402590:CDS 55.0%
GGCTATGTTGCCCAACCAGT+TGG + tig0022882:1625-1644 Msa1402590:CDS 55.0%
GAGCTGGATACATCCTCCAC+AGG + tig0022882:727-746 Msa1402590:CDS 55.0%
CTCACCAAGGATGCGAGGAA+GGG + tig0022882:1311-1330 Msa1402590:CDS 55.0%
TCACCAAGGATGCGAGGAAG+GGG + tig0022882:1312-1331 Msa1402590:CDS 55.0%
AAGGGGACGTGGTCATGGAA+GGG + tig0022882:1329-1348 Msa1402590:CDS 55.0%
ACGTGGTCATGGAAGGGGAA+GGG + tig0022882:1335-1354 Msa1402590:CDS 55.0%
GGCTATGTTGCCCAACCAGT+TGG + tig0022882:1625-1644 Msa1402590:CDS 55.0%
GAAGGCTCACCAAGGATGCG+AGG + tig0022882:1306-1325 Msa1402590:intron 60.0%
GCTCACCAAGGATGCGAGGA+AGG + tig0022882:1310-1329 Msa1402590:CDS 60.0%
GAAGGGGACGTGGTCATGGA+AGG + tig0022882:1328-1347 Msa1402590:CDS 60.0%
AGGGGACGTGGTCATGGAAG+GGG + tig0022882:1330-1349 Msa1402590:CDS 60.0%
GACGTGGTCATGGAAGGGGA+AGG + tig0022882:1334-1353 Msa1402590:CDS 60.0%
CGTGGTCATGGAAGGGGAAG+GGG + tig0022882:1336-1355 Msa1402590:CDS 60.0%
CATGGAAGGGGAAGGGGAAG+AGG + tig0022882:1342-1361 Msa1402590:CDS 60.0%
CATAGCCACGTCCTTGTCCC+CGG - tig0022882:1612-1631 None:intergenic 60.0%
GAAGGCTCACCAAGGATGCG+AGG + tig0022882:1306-1325 Msa1402590:intron 60.0%
GCTCACCAAGGATGCGAGGA+AGG + tig0022882:1310-1329 Msa1402590:CDS 60.0%
GAAGGGGACGTGGTCATGGA+AGG + tig0022882:1328-1347 Msa1402590:CDS 60.0%
AGGGGACGTGGTCATGGAAG+GGG + tig0022882:1330-1349 Msa1402590:CDS 60.0%
GACGTGGTCATGGAAGGGGA+AGG + tig0022882:1334-1353 Msa1402590:CDS 60.0%
CGTGGTCATGGAAGGGGAAG+GGG + tig0022882:1336-1355 Msa1402590:CDS 60.0%
CATGGAAGGGGAAGGGGAAG+AGG + tig0022882:1342-1361 Msa1402590:CDS 60.0%
CATAGCCACGTCCTTGTCCC+CGG - tig0022882:1612-1631 None:intergenic 60.0%
CGTCCCCTTCCTCGCATCCT+TGG - tig0022882:1318-1337 None:intergenic 65.0%
AGGATGCGAGGAAGGGGACG+TGG + tig0022882:1318-1337 Msa1402590:CDS 65.0%
CGAGGAAGGGGACGTGGTCA+TGG + tig0022882:1324-1343 Msa1402590:CDS 65.0%
AGGGGAAGGGGAAGAGGCAG+AGG + tig0022882:1348-1367 Msa1402590:CDS 65.0%
GTTGGTTGGGATCGTGGGCG+TGG + tig0022882:1544-1563 Msa1402590:CDS 65.0%
TGGGATCGTGGGCGTGGCTA+TGG + tig0022882:1550-1569 Msa1402590:CDS 65.0%
GATCGTGGGCGTGGCTATGG+TGG + tig0022882:1553-1572 Msa1402590:CDS 65.0%
! GGAAGGCACGGTCCCATGCA+CGG - tig0022882:1591-1610 None:intergenic 65.0%
GTGCATGGGACCGTGCCTTC+CGG + tig0022882:1590-1609 Msa1402590:CDS 65.0%
TGCATGGGACCGTGCCTTCC+GGG + tig0022882:1591-1610 Msa1402590:CDS 65.0%
GTCCTTGTCCCCGGAAGGCA+CGG - tig0022882:1603-1622 None:intergenic 65.0%
CGTCCCCTTCCTCGCATCCT+TGG - tig0022882:1318-1337 None:intergenic 65.0%
AGGATGCGAGGAAGGGGACG+TGG + tig0022882:1318-1337 Msa1402590:CDS 65.0%
CGAGGAAGGGGACGTGGTCA+TGG + tig0022882:1324-1343 Msa1402590:CDS 65.0%
AGGGGAAGGGGAAGAGGCAG+AGG + tig0022882:1348-1367 Msa1402590:CDS 65.0%
GTTGGTTGGGATCGTGGGCG+TGG + tig0022882:1544-1563 Msa1402590:CDS 65.0%
TGGGATCGTGGGCGTGGCTA+TGG + tig0022882:1550-1569 Msa1402590:CDS 65.0%
GATCGTGGGCGTGGCTATGG+TGG + tig0022882:1553-1572 Msa1402590:CDS 65.0%
! GGAAGGCACGGTCCCATGCA+CGG - tig0022882:1591-1610 None:intergenic 65.0%
GTGCATGGGACCGTGCCTTC+CGG + tig0022882:1590-1609 Msa1402590:CDS 65.0%
TGCATGGGACCGTGCCTTCC+GGG + tig0022882:1591-1610 Msa1402590:CDS 65.0%
GTCCTTGTCCCCGGAAGGCA+CGG - tig0022882:1603-1622 None:intergenic 65.0%
GGCGTGGCTATGGTGGCCGA+GGG + tig0022882:1560-1579 Msa1402590:CDS 70.0%
GCATGGGACCGTGCCTTCCG+GGG + tig0022882:1592-1611 Msa1402590:CDS 70.0%
GACCGTGCCTTCCGGGGACA+AGG + tig0022882:1598-1617 Msa1402590:CDS 70.0%
GCCTTCCGGGGACAAGGACG+TGG + tig0022882:1604-1623 Msa1402590:CDS 70.0%
GCCACGTCCTTGTCCCCGGA+AGG - tig0022882:1608-1627 None:intergenic 70.0%
GGCGTGGCTATGGTGGCCGA+GGG + tig0022882:1560-1579 Msa1402590:CDS 70.0%
GCATGGGACCGTGCCTTCCG+GGG + tig0022882:1592-1611 Msa1402590:CDS 70.0%
GACCGTGCCTTCCGGGGACA+AGG + tig0022882:1598-1617 Msa1402590:CDS 70.0%
GCCTTCCGGGGACAAGGACG+TGG + tig0022882:1604-1623 Msa1402590:CDS 70.0%
GCCACGTCCTTGTCCCCGGA+AGG - tig0022882:1608-1627 None:intergenic 70.0%
GGGCGTGGCTATGGTGGCCG+AGG + tig0022882:1559-1578 Msa1402590:CDS 75.0%
GGCTATGGTGGCCGAGGGCG+TGG + tig0022882:1565-1584 Msa1402590:CDS 75.0%
CCCATGCACGGCCACGCCCT+CGG - tig0022882:1579-1598 None:intergenic 75.0%
! CCGAGGGCGTGGCCGTGCAT+GGG + tig0022882:1576-1595 Msa1402590:CDS 75.0%
GGGCGTGGCTATGGTGGCCG+AGG + tig0022882:1559-1578 Msa1402590:CDS 75.0%
GGCTATGGTGGCCGAGGGCG+TGG + tig0022882:1565-1584 Msa1402590:CDS 75.0%
CCCATGCACGGCCACGCCCT+CGG - tig0022882:1579-1598 None:intergenic 75.0%
! CCGAGGGCGTGGCCGTGCAT+GGG + tig0022882:1576-1595 Msa1402590:CDS 75.0%
!! GCCGAGGGCGTGGCCGTGCA+TGG + tig0022882:1575-1594 Msa1402590:CDS 80.0%
!! GCCGAGGGCGTGGCCGTGCA+TGG + tig0022882:1575-1594 Msa1402590:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0022882 gene 326 1663 326 ID=Msa1402590;Name=Msa1402590
tig0022882 mRNA 326 1663 326 ID=Msa1402590-mRNA-1;Parent=Msa1402590;Name=Msa1402590-mRNA-1;_AED=0.40;_eAED=0.43;_QI=0|0|0|0.83|1|1|6|0|152
tig0022882 exon 326 403 326 ID=Msa1402590-mRNA-1:exon:19039;Parent=Msa1402590-mRNA-1
tig0022882 exon 496 584 496 ID=Msa1402590-mRNA-1:exon:19040;Parent=Msa1402590-mRNA-1
tig0022882 exon 675 749 675 ID=Msa1402590-mRNA-1:exon:19041;Parent=Msa1402590-mRNA-1
tig0022882 exon 836 840 836 ID=Msa1402590-mRNA-1:exon:19042;Parent=Msa1402590-mRNA-1
tig0022882 exon 1307 1369 1307 ID=Msa1402590-mRNA-1:exon:19043;Parent=Msa1402590-mRNA-1
tig0022882 exon 1515 1663 1515 ID=Msa1402590-mRNA-1:exon:19044;Parent=Msa1402590-mRNA-1
tig0022882 CDS 326 403 326 ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1
tig0022882 CDS 496 584 496 ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1
tig0022882 CDS 675 749 675 ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1
tig0022882 CDS 836 840 836 ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1
tig0022882 CDS 1307 1369 1307 ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1
tig0022882 CDS 1515 1663 1515 ID=Msa1402590-mRNA-1:cds;Parent=Msa1402590-mRNA-1
Gene Sequence

>Msa1402590

AAAGGAACTGAAGAAATCGTTCTCAAAGCAATGGGACGAGCGATTAATAAGACTGTGACGATTACTGAGCTAATTAAGAGAAGGATTGTTGGTCTGCATCAGAACACTATTATTGGATCAACTGATATAACTGACACATGGGAACCACTTGAAGAAGGCCTTCTTCCTTTGGAAACTACTCGTCATGTTTCAATGATCACAATTACTTTGTCAAAGAAAGAGCTGGATACATCCTCCACAGGGCTTAAAGGCTCACCAAGGATGCGAGGAAGGGGACGTGGTCATGGAAGGGGAAGGGGAAGAGGCAGAGCAATGTACAATGGGGGTATGGAATATGGTGTTGGTTGGGATCGTGGGCGTGGCTATGGTGGCCGAGGGCGTGGCCGTGCATGGGACCGTGCCTTCCGGGGACAAGGACGTGGCTATGTTGCCCAACCAGTTGGGTTACGACAATGGTGA

Protein sequence

>Msa1402590

KGTEEIVLKAMGRAINKTVTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGLKGSPRMRGRGRGHGRGRGRGRAMYNGGMEYGVGWDRGRGYGGRGRGRAWDRAFRGQGRGYVAQPVGLRQW*