AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1360280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360280 MtrunA17_Chr2g0331461 95.290 637 29 1 1 636 1 637 0.0 1192
Msa1360280 MtrunA17_Chr2g0331481 84.434 636 99 0 1 636 1 636 0.0 1098
Msa1360280 MtrunA17_Chr2g0331471 83.019 636 107 1 1 636 65 699 0.0 1079
Msa1360280 MtrunA17_Chr2g0331511 78.840 638 122 5 1 636 1 627 0.0 1040
Msa1360280 MtrunA17_Chr4g0003761 66.611 599 187 6 1 592 1 593 0.0 813
Msa1360280 MtrunA17_Chr1g0177591 67.826 575 160 5 1 575 24 573 0.0 798
Msa1360280 MtrunA17_Chr2g0331521 55.651 584 248 6 1 580 1 577 0.0 682
Msa1360280 MtrunA17_Chr1g0177611 68.035 463 129 3 113 575 1 444 0.0 655
Msa1360280 MtrunA17_Chr1g0177631 68.683 463 126 3 113 575 1 444 0.0 640
Msa1360280 MtrunA17_Chr8g0390331 46.632 579 296 6 16 586 6 579 0.0 533
Msa1360280 MtrunA17_Chr1g0147631 47.804 592 292 8 5 584 1 587 3.22e-178 518
Msa1360280 MtrunA17_Chr1g0157601 46.333 559 286 7 14 568 7 555 1.13e-176 513
Msa1360280 MtrunA17_Chr1g0157611 47.405 578 283 9 14 586 8 569 8.88e-172 501
Msa1360280 MtrunA17_Chr1g0157621 45.735 551 282 8 46 592 1 538 7.92e-158 465
Msa1360280 MtrunA17_Chr5g0415791 36.286 587 349 11 15 585 19 596 2.65e-127 388
Msa1360280 MtrunA17_Chr4g0059991 35.140 609 364 11 9 602 7 599 1.87e-123 378
Msa1360280 MtrunA17_Chr4g0059971 36.637 565 346 7 11 566 20 581 2.82e-122 375
Msa1360280 MtrunA17_Chr5g0422881 34.179 591 369 9 8 589 3 582 1.01e-118 365
Msa1360280 MtrunA17_Chr7g0255601 34.483 580 355 12 15 580 17 585 7.59e-116 359
Msa1360280 MtrunA17_Chr4g0059981 34.465 589 364 12 14 583 15 600 1.03e-113 353
Msa1360280 MtrunA17_Chr7g0255611 32.945 601 378 12 10 598 14 601 1.51e-113 352
Msa1360280 MtrunA17_Chr7g0255621 32.727 605 380 12 17 611 12 599 2.62e-113 352
Msa1360280 MtrunA17_Chr8g0362781 34.744 567 351 11 14 566 17 578 3.97e-109 340
Msa1360280 MtrunA17_Chr8g0375311 35.273 550 338 9 25 566 40 579 8.83e-108 337
Msa1360280 MtrunA17_Chr8g0375321 33.391 581 365 9 2 568 6 578 5.06e-104 327
Msa1360280 MtrunA17_Chr8g0375291 34.552 547 336 11 25 561 40 574 4.02e-103 325
Msa1360280 MtrunA17_Chr3g0104011 34.601 552 338 12 25 566 22 560 5.58e-102 322
Msa1360280 MtrunA17_Chr8g0375351 33.273 556 351 9 21 566 34 579 2.06e-101 320
Msa1360280 MtrunA17_Chr8g0375341 32.671 554 357 8 21 566 34 579 1.49e-97 310
Msa1360280 MtrunA17_Chr4g0060001 31.667 600 385 12 14 601 18 604 2.44e-97 310
Msa1360280 MtrunA17_Chr8g0375331 33.977 518 324 8 35 544 34 541 5.34e-96 306
Msa1360280 MtrunA17_Chr4g0005901 33.877 552 340 12 25 566 32 568 6.75e-96 306
Msa1360280 MtrunA17_Chr8g0362801 36.052 466 278 9 113 566 1 458 1.81e-95 301
Msa1360280 MtrunA17_Chr7g0241741 32.743 565 346 11 15 560 3 552 3.57e-94 301
Msa1360280 MtrunA17_Chr7g0240271 30.283 601 382 12 14 592 3 588 2.92e-92 296
Msa1360280 MtrunA17_Chr8g0375361 33.333 552 346 10 25 566 39 578 3.91e-92 296
Msa1360280 MtrunA17_Chr7g0240281 31.034 580 373 13 25 589 24 591 1.21e-90 292
Msa1360280 MtrunA17_Chr5g0399061 31.162 568 364 15 25 579 26 579 2.52e-88 286
Msa1360280 MtrunA17_Chr3g0142091 33.058 605 361 14 2 594 3 575 5.72e-88 285
Msa1360280 MtrunA17_Chr3g0142101 32.297 579 352 12 25 594 35 582 8.43e-87 282
Msa1360280 MtrunA17_Chr2g0325951 33.735 581 333 16 1 566 1 544 6.84e-86 279
Msa1360280 MtrunA17_Chr2g0325961 33.564 578 339 14 1 566 1 545 6.28e-85 276
Msa1360280 MtrunA17_Chr2g0326211 34.242 587 322 17 1 566 1 544 4.03e-84 274
Msa1360280 MtrunA17_Chr7g0214731 32.378 593 353 15 29 592 65 638 1.20e-83 275
Msa1360280 MtrunA17_Chr7g0261811 31.389 583 363 13 36 600 38 601 1.02e-82 272
Msa1360280 MtrunA17_Chr5g0399071 29.371 572 367 13 14 566 14 567 6.09e-82 270
Msa1360280 MtrunA17_Chr7g0261851 31.311 610 379 16 11 604 12 597 3.22e-81 268
Msa1360280 MtrunA17_Chr4g0014781 31.469 572 352 14 4 566 10 550 3.42e-81 266
Msa1360280 MtrunA17_Chr5g0415841 32.833 466 291 11 113 566 1 456 9.18e-81 263
Msa1360280 MtrunA17_Chr4g0014871 31.185 574 359 13 2 566 6 552 9.94e-81 265
Msa1360280 MtrunA17_Chr1g0187241 30.503 577 367 13 26 585 26 585 2.74e-80 265
Msa1360280 MtrunA17_Chr3g0112671 29.519 603 386 13 1 589 1 578 3.54e-80 265
Msa1360280 MtrunA17_Chr4g0014791 31.944 576 342 14 4 566 10 548 4.03e-80 264
Msa1360280 MtrunA17_Chr7g0261881 31.369 577 358 15 36 594 38 594 3.08e-79 262
Msa1360280 MtrunA17_Chr5g0439381 30.442 565 359 11 29 584 32 571 3.12e-79 262
Msa1360280 MtrunA17_Chr4g0056431 30.465 581 372 13 25 588 24 589 4.45e-79 262
Msa1360280 MtrunA17_Chr7g0261771 30.612 588 377 13 26 598 31 602 9.81e-79 261
Msa1360280 MtrunA17_Chr7g0261791 31.005 587 366 14 21 587 23 590 4.67e-78 259
Msa1360280 MtrunA17_Chr3g0077151 31.047 554 339 10 25 570 28 546 5.40e-78 258
Msa1360280 MtrunA17_Chr3g0112611 32.399 571 354 15 36 593 43 594 5.64e-78 259
Msa1360280 MtrunA17_Chr4g0063591 29.661 590 397 10 1 586 1 576 1.09e-77 258
Msa1360280 MtrunA17_Chr1g0166711 31.664 559 350 12 36 579 36 577 1.45e-77 258
Msa1360280 MtrunA17_Chr3g0114501 31.193 545 342 15 36 566 33 558 3.68e-77 257
Msa1360280 MtrunA17_Chr4g0014801 30.836 574 351 15 4 566 10 548 4.50e-77 256
Msa1360280 MtrunA17_Chr4g0008651 30.168 537 354 12 36 566 45 566 4.97e-77 256
Msa1360280 MtrunA17_Chr4g0014841 30.890 573 352 14 4 566 10 548 2.03e-76 254
Msa1360280 MtrunA17_Chr7g0240381 29.091 605 379 17 2 589 9 580 7.22e-76 253
Msa1360280 MtrunA17_Chr1g0166791 31.250 560 344 16 26 566 24 561 2.57e-75 252
Msa1360280 MtrunA17_Chr8g0353031 31.478 575 347 10 28 587 21 563 7.70e-74 248
Msa1360280 MtrunA17_Chr3g0133341 30.071 562 360 12 16 564 5 546 2.45e-72 243
Msa1360280 MtrunA17_Chr2g0284701 28.405 602 403 14 1 584 11 602 6.09e-72 243
Msa1360280 MtrunA17_Chr7g0214461 28.961 587 387 11 10 586 63 629 7.27e-72 244
Msa1360280 MtrunA17_Chr5g0400371 29.061 554 380 8 37 582 124 672 3.33e-71 243
Msa1360280 MtrunA17_Chr7g0240131 29.918 488 319 10 113 588 1 477 3.97e-71 238
Msa1360280 MtrunA17_Chr7g0240181 30.652 460 297 9 113 560 1 450 4.20e-70 235
Msa1360280 MtrunA17_Chr7g0240211 30.652 460 297 9 113 560 1 450 4.75e-70 235
Msa1360280 MtrunA17_Chr2g0276751 28.399 581 379 14 11 578 18 574 1.36e-69 236
Msa1360280 MtrunA17_Chr7g0235521 30.652 460 297 9 113 560 1 450 1.61e-69 233
Msa1360280 MtrunA17_Chr1g0193391 27.332 611 405 15 11 611 3 584 1.40e-68 234
Msa1360280 MtrunA17_Chr1g0166741 30.855 538 334 16 26 549 27 540 1.99e-68 233
Msa1360280 MtrunA17_Chr4g0014861 31.973 441 276 9 134 566 3 427 2.91e-68 229
Msa1360280 MtrunA17_Chr1g0213711 29.049 568 366 13 15 566 8 554 1.23e-66 229
Msa1360280 MtrunA17_Chr7g0271221 29.078 564 365 14 11 565 3 540 1.76e-66 228
Msa1360280 MtrunA17_Chr8g0379971 29.180 610 380 16 14 579 2 603 3.12e-66 228
Msa1360280 MtrunA17_Chr7g0240151 30.435 460 280 11 113 560 1 432 1.71e-65 222
Msa1360280 MtrunA17_Chr1g0147591 55.670 194 81 4 154 344 9 200 2.45e-65 213
Msa1360280 MtrunA17_Chr1g0166771 29.310 522 330 16 45 552 11 507 5.42e-65 223
Msa1360280 MtrunA17_Chr7g0218851 28.846 572 377 10 26 585 47 600 1.21e-64 224
Msa1360280 MtrunA17_Chr4g0054891 28.358 536 363 8 37 563 122 645 2.60e-63 221
Msa1360280 MtrunA17_Chr7g0261661 29.821 503 322 13 113 600 1 487 5.38e-63 216
Msa1360280 MtrunA17_Chr4g0011471 29.151 542 361 11 36 566 27 556 3.33e-62 216
Msa1360280 MtrunA17_Chr1g0166731 30.353 481 307 10 112 579 9 474 5.36e-62 213
Msa1360280 MtrunA17_Chr8g0379991 30.465 581 352 17 46 579 1 576 1.60e-61 214
Msa1360280 MtrunA17_Chr3g0082631 31.808 437 257 12 151 563 34 453 2.71e-61 211
Msa1360280 MtrunA17_Chr7g0217461 29.004 562 364 15 1 544 2 546 8.77e-61 213
Msa1360280 MtrunA17_Chr8g0362711 26.998 563 362 14 28 565 27 565 3.32e-58 205
Msa1360280 MtrunA17_Chr5g0415961 24.694 571 382 12 21 565 18 566 1.32e-54 196
Msa1360280 MtrunA17_Chr4g0011041 25.312 561 388 14 23 566 32 578 2.29e-51 187
Msa1360280 MtrunA17_Chr4g0069581 29.259 499 314 16 86 571 47 519 7.56e-50 182
Msa1360280 MtrunA17_Chr7g0261751 29.870 462 265 13 26 442 31 478 3.08e-48 177
Msa1360280 MtrunA17_Chr6g0451841 25.650 577 358 15 18 566 1 534 1.07e-46 173
Msa1360280 MtrunA17_Chr3g0112631 31.119 286 189 3 294 579 3 280 1.40e-44 160
Msa1360280 MtrunA17_Chr7g0261731 33.538 325 192 9 26 339 31 342 2.25e-43 159
Msa1360280 MtrunA17_Chr3g0142121 31.683 303 181 6 297 594 3 284 1.14e-42 155
Msa1360280 MtrunA17_Chr4g0060071 29.391 279 176 7 290 565 32 292 6.19e-37 140
Msa1360280 MtrunA17_Chr3g0142111 31.690 284 184 5 25 301 46 326 2.22e-34 134
Msa1360280 MtrunA17_Chr7g0234381 26.840 462 285 13 112 566 3 418 5.05e-31 125
Msa1360280 MtrunA17_Chr7g0261721 28.696 230 161 2 371 598 4 232 1.27e-29 117
Msa1360280 MtrunA17_Chr7g0234181 26.797 459 283 13 115 566 1 413 1.77e-27 115
Msa1360280 MtrunA17_Chr7g0234151 25.918 463 288 14 112 566 3 418 5.55e-26 110
Msa1360280 MtrunA17_Chr2g0326221 30.672 238 131 6 331 566 15 220 7.89e-25 103
Msa1360280 MtrunA17_Chr1g0177601 68.852 61 19 0 55 115 1 61 2.66e-20 85.1
Msa1360280 MtrunA17_Chr1g0177621 68.852 61 19 0 55 115 1 61 2.66e-20 85.1
Msa1360280 MtrunA17_Chr1g0147581 41.071 112 60 1 431 542 10 115 2.96e-19 84.0
Msa1360280 MtrunA17_Chr8g0382591 39.695 131 71 5 294 420 3 129 2.46e-18 82.0
Msa1360280 MtrunA17_Chr3g0112651 28.713 202 131 6 100 295 9 203 5.51e-17 80.1
Msa1360280 MtrunA17_Chr7g0240221 32.432 111 65 1 11 111 3 113 4.01e-14 69.3
Msa1360280 MtrunA17_Chr7g0240191 32.432 111 65 1 11 111 3 113 4.01e-14 69.3
Msa1360280 MtrunA17_Chr7g0240161 32.432 111 65 1 11 111 3 113 4.01e-14 69.3
Msa1360280 MtrunA17_Chr7g0240141 31.532 111 66 1 11 111 3 113 1.55e-13 67.8
Msa1360280 MtrunA17_Chr8g0362791 38.372 86 53 0 30 115 41 126 1.92e-12 65.1
Msa1360280 MtrunA17_Chr7g0235511 30.973 113 66 2 11 111 3 115 1.01e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360280 AT1G52190.1 54.766 577 254 6 15 585 9 584 0.0 655
Msa1360280 AT3G16180.1 53.242 586 267 7 11 591 6 589 0.0 635
Msa1360280 AT1G69870.1 34.835 577 359 9 18 585 42 610 9.69e-121 372
Msa1360280 AT5G62680.1 37.007 608 353 13 9 602 25 616 1.50e-117 363
Msa1360280 AT1G68570.1 35.605 587 363 8 9 586 5 585 4.04e-116 359
Msa1360280 AT3G47960.1 36.572 566 340 10 10 566 50 605 1.28e-111 349
Msa1360280 AT1G18880.1 34.549 576 355 10 30 594 22 586 1.58e-111 347
Msa1360280 AT5G11570.1 38.971 544 248 11 28 567 14 477 1.94e-111 343
Msa1360280 AT1G27080.1 34.206 573 346 13 24 587 11 561 7.26e-107 335
Msa1360280 AT1G62200.1 35.079 573 345 10 1 562 25 581 5.65e-106 333
Msa1360280 AT1G68570.2 34.829 557 348 8 39 586 5 555 2.52e-104 328
Msa1360280 AT2G02040.1 33.857 573 356 11 5 566 18 578 1.72e-103 326
Msa1360280 AT1G62200.2 33.721 602 343 11 1 562 25 610 6.26e-101 320
Msa1360280 AT1G62200.3 33.721 602 343 11 1 562 39 624 7.37e-101 321
Msa1360280 AT3G54140.1 35.185 540 329 11 36 566 33 560 8.62e-101 318
Msa1360280 AT3G54140.2 35.185 540 329 11 36 566 33 560 8.62e-101 318
Msa1360280 AT5G01180.2 35.135 555 328 13 21 560 17 554 1.47e-99 315
Msa1360280 AT5G01180.3 35.135 555 328 13 21 560 17 554 1.47e-99 315
Msa1360280 AT5G01180.1 35.135 555 328 13 21 560 17 554 1.47e-99 315
Msa1360280 AT1G27080.2 34.196 541 325 13 56 587 1 519 3.20e-98 311
Msa1360280 AT5G28470.2 33.517 543 342 10 25 559 15 546 4.65e-97 308
Msa1360280 AT5G28470.1 33.333 543 341 11 25 559 15 544 3.10e-94 301
Msa1360280 AT3G45650.1 32.566 565 346 11 9 566 4 540 3.48e-91 293
Msa1360280 AT3G45660.1 31.834 578 358 13 14 587 8 553 7.60e-89 287
Msa1360280 AT3G45660.3 31.834 578 358 13 14 587 8 553 7.60e-89 287
Msa1360280 AT3G45660.2 31.834 578 358 13 14 587 29 574 1.09e-88 287
Msa1360280 AT3G54450.1 31.763 573 347 11 25 580 10 555 2.93e-87 283
Msa1360280 AT3G45710.1 31.794 563 349 10 12 566 6 541 9.62e-86 279
Msa1360280 AT3G45650.2 31.134 591 346 12 9 566 4 566 1.21e-85 280
Msa1360280 AT2G02020.1 31.685 546 324 10 25 566 40 540 3.92e-85 277
Msa1360280 AT1G69860.1 32.369 553 341 11 25 566 16 546 7.65e-85 276
Msa1360280 AT2G26690.1 30.192 573 383 10 13 581 10 569 1.22e-82 271
Msa1360280 AT3G45720.1 31.107 569 350 14 28 588 20 554 1.80e-80 265
Msa1360280 AT5G46050.1 30.443 542 348 11 21 549 19 544 6.58e-80 264
Msa1360280 AT2G26690.2 30.642 545 361 10 41 581 5 536 1.03e-79 263
Msa1360280 AT3G21670.1 29.431 598 392 12 11 599 12 588 1.41e-78 261
Msa1360280 AT2G26690.3 30.784 536 354 10 50 581 2 524 1.04e-77 257
Msa1360280 AT2G37900.1 29.455 550 355 12 24 563 34 560 4.33e-77 256
Msa1360280 AT1G12110.1 31.771 576 361 15 21 579 19 579 9.61e-77 256
Msa1360280 AT3G45680.1 30.810 568 356 12 7 566 1 539 1.04e-76 255
Msa1360280 AT1G22540.1 31.826 553 345 10 21 566 22 549 1.87e-76 254
Msa1360280 AT3G45700.1 29.611 591 359 13 11 593 5 546 5.27e-76 253
Msa1360280 AT5G46040.1 30.857 525 336 11 36 549 36 544 1.17e-74 250
Msa1360280 AT5G13400.1 31.349 571 361 11 29 583 66 621 1.65e-74 251
Msa1360280 AT1G33440.1 28.983 590 372 15 23 589 32 597 3.18e-74 249
Msa1360280 AT2G40460.1 30.127 551 352 12 36 575 33 561 5.30e-74 248
Msa1360280 AT1G72125.1 30.203 543 340 10 36 566 38 553 8.24e-74 248
Msa1360280 AT3G53960.1 27.915 609 400 14 10 594 6 599 2.59e-73 247
Msa1360280 AT2G37900.2 29.495 495 317 12 78 563 10 481 4.45e-71 238
Msa1360280 AT1G59740.1 28.998 569 368 14 11 563 23 571 5.05e-70 238
Msa1360280 AT1G72140.1 28.929 560 340 12 25 566 32 551 5.49e-70 237
Msa1360280 AT2G02020.2 29.044 544 320 9 25 566 40 519 1.32e-69 235
Msa1360280 AT1G32450.1 28.147 572 388 9 37 592 47 611 3.26e-69 236
Msa1360280 AT1G22550.1 29.758 578 367 12 2 566 5 556 6.97e-69 234
Msa1360280 AT5G46050.2 31.166 446 284 8 113 549 1 432 2.07e-67 228
Msa1360280 AT1G72120.1 29.545 572 349 12 11 566 16 549 2.20e-67 230
Msa1360280 AT1G22570.1 29.084 557 361 9 2 547 5 538 3.95e-67 229
Msa1360280 AT1G27040.1 29.061 554 349 11 29 565 29 555 5.71e-66 226
Msa1360280 AT1G27040.2 29.061 554 349 11 29 565 25 551 1.07e-65 226
Msa1360280 AT1G22570.2 29.537 518 331 9 41 547 7 501 1.72e-64 222
Msa1360280 AT1G72130.1 28.261 552 342 10 25 566 23 530 1.99e-64 222
Msa1360280 AT4G21680.1 27.133 586 384 14 3 566 6 570 2.46e-63 220
Msa1360280 AT1G27040.3 29.044 544 342 11 39 565 7 523 6.22e-63 218
Msa1360280 AT3G45690.1 28.980 559 322 15 15 566 6 496 1.22e-62 216
Msa1360280 AT5G19640.1 27.444 583 373 16 28 593 60 609 1.37e-58 207
Msa1360280 AT5G14940.1 26.399 572 365 12 25 572 5 544 2.03e-52 189
Msa1360280 AT1G69850.1 26.362 569 365 15 29 565 27 573 7.19e-52 188
Msa1360280 AT1G72130.2 28.406 433 266 9 144 566 14 412 1.88e-50 181
Msa1360280 AT1G72130.3 28.406 433 266 9 144 566 14 412 1.88e-50 181
Msa1360280 AT3G01350.1 25.868 576 373 16 25 572 5 554 6.73e-49 180
Msa1360280 AT5G62730.1 24.955 557 381 11 28 572 57 588 6.62e-47 175
Msa1360280 AT5G62730.2 24.954 549 375 11 36 572 6 529 1.40e-45 170
Msa1360280 AT3G25260.1 26.128 532 332 15 41 565 35 512 1.35e-44 167
Msa1360280 AT3G25280.1 25.385 520 335 14 52 565 46 518 6.51e-37 145
Msa1360280 AT2G38100.2 24.081 544 353 13 55 586 2 497 4.26e-29 122
Msa1360280 AT2G38100.1 24.081 544 353 13 55 586 18 513 1.26e-28 120
Msa1360280 AT2G38100.3 24.081 544 353 13 55 586 24 519 1.50e-28 120

Find 144 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTAATAAAACTCATTT+TGG 0.123205 tig0016995:+56978 None:intergenic
TTCCAAAGCTCTAGTGTTAT+TGG 0.141390 tig0016995:+58006 None:intergenic
GTCATTTCGACAAATATTTA+TGG 0.147038 tig0016995:-56802 Msa1360280:CDS
GATCATCTTGGTTGGAAAAT+TGG 0.157074 tig0016995:-57908 Msa1360280:CDS
ACTCGTGTAGGCCGACTATT+AGG 0.200019 tig0016995:-56124 Msa1360280:three_prime_UTR
AAATAAAGCTTGTGTTATTA+AGG 0.217505 tig0016995:-57530 Msa1360280:CDS
TTATCTTTGTAATACTTATA+TGG 0.221781 tig0016995:-57270 Msa1360280:CDS
GCTGAGGCATTCAATGTTAT+TGG 0.226194 tig0016995:-57001 Msa1360280:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 tig0016995:+57423 None:intergenic
GCTTGCACCTTCACTTTGTT+TGG 0.290635 tig0016995:-57032 Msa1360280:CDS
TTTATTGCAGATTCTTATAT+TGG 0.292916 tig0016995:-59138 Msa1360280:CDS
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 tig0016995:-57902 Msa1360280:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.297883 tig0016995:-56545 Msa1360280:CDS
CAAGTAGGAGGCTGCGTCGC+TGG 0.300060 tig0016995:+58175 None:intergenic
ATTTCATGTTCTTTAGCATT+TGG 0.304538 tig0016995:-58058 Msa1360280:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 tig0016995:-56740 Msa1360280:CDS
AAGGAGAAAGAGAGCAATTC+AGG 0.311738 tig0016995:-57104 Msa1360280:CDS
GCTGTCATAGCAGCTCTATT+TGG 0.312595 tig0016995:-57947 Msa1360280:CDS
GATAAGATACCAATGATAAA+AGG 0.324542 tig0016995:+59405 None:intergenic
TGAAATGATATGTCTGTCTA+AGG 0.326067 tig0016995:+57336 None:intergenic
GTTATTCCATTGTGGTCAAC+AGG 0.337103 tig0016995:-57412 Msa1360280:CDS
AGGTTCTATTATCAGTTTCC+TGG 0.349967 tig0016995:-59094 Msa1360280:intron
GCGTTAATTCTGATAGGAAT+TGG 0.359891 tig0016995:-58091 Msa1360280:CDS
TTTGCTGATATACAGCCTTC+AGG 0.359961 tig0016995:+58142 None:intergenic
GAAACACTAGACATAGTCTT+TGG 0.360014 tig0016995:+56950 None:intergenic
ATTAACATCGGAGGCTCGTT+TGG 0.361174 tig0016995:-57376 Msa1360280:CDS
CAACATGATATTGTATTTGA+TGG 0.361317 tig0016995:-59247 Msa1360280:CDS
GCACCTTCACTTTGTTTGGC+TGG 0.361719 tig0016995:-57028 Msa1360280:CDS
CCTCTTATCTTTGATGCTAA+AGG 0.364995 tig0016995:+57220 None:intergenic
TTCCAATAACACTAGAGCTT+TGG 0.365192 tig0016995:-58008 Msa1360280:CDS
TCATTTCGACAAATATTTAT+GGG 0.366923 tig0016995:-56801 Msa1360280:CDS
AAAAGAAGACACCAAGTTTC+CGG 0.373199 tig0016995:+56898 None:intergenic
AGTGTTTCTTCAGCACTCTC+TGG 0.375458 tig0016995:-56935 Msa1360280:CDS
CTAACCTTGTCATCAATTTG+TGG 0.379224 tig0016995:+56635 None:intergenic
GACATGTGGTTCCCACGATT+TGG 0.391714 tig0016995:+56382 None:intergenic
AGACCACCCTTGCTTCTTTG+TGG 0.395960 tig0016995:+59438 None:intergenic
TCCAAAGTGAGTGAAGAAAA+TGG 0.396852 tig0016995:-56698 Msa1360280:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.398985 tig0016995:-59114 Msa1360280:CDS
CAAAAGATAGATATATATAT+AGG 0.402040 tig0016995:+59564 None:intergenic
TCTTATATTGGTCGATTCCT+AGG 0.404111 tig0016995:-59126 Msa1360280:CDS
TTCTTCAGCACTCTCTGGAT+TGG 0.405295 tig0016995:-56930 Msa1360280:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 tig0016995:-57220 Msa1360280:CDS
ATCCATGTGTCATAATCTTA+AGG 0.421809 tig0016995:+56184 None:intergenic
ATCAAATACAATATCATGTT+GGG 0.422265 tig0016995:+59249 None:intergenic
AGGCTGCGTCGCTGGGATCA+TGG 0.429972 tig0016995:+58183 None:intergenic
CTTTGGAAATATTCTTCACT+TGG 0.431586 tig0016995:-57991 Msa1360280:CDS
ATCAGCAAAACCAGGTCAAA+TGG 0.449605 tig0016995:-58128 Msa1360280:CDS
CCAAGTCCCATTCTTATCTT+CGG 0.449902 tig0016995:+57178 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 tig0016995:-56748 Msa1360280:CDS
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 tig0016995:-58097 Msa1360280:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.462855 tig0016995:-56909 Msa1360280:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 tig0016995:-59475 Msa1360280:CDS
CCGAAGATAAGAATGGGACT+TGG 0.464562 tig0016995:-57178 Msa1360280:CDS
AAGTAGGAGGCTGCGTCGCT+GGG 0.464764 tig0016995:+58176 None:intergenic
AAATATTTATGGGTTATAGC+TGG 0.467548 tig0016995:-56791 Msa1360280:CDS
ACTTCAAGTGGAGGAAAAGA+TGG 0.470588 tig0016995:-56851 Msa1360280:CDS
TAGTGAAGAAAATGGCTTGA+AGG 0.470983 tig0016995:-56537 Msa1360280:CDS
GCAATAAAAGCAGCAACAAC+AGG 0.471001 tig0016995:+59153 None:intergenic
AGGAGGAATAGTACGATAGA+AGG 0.477176 tig0016995:-56517 Msa1360280:exon
ATTCTGATAGGAATTGGAAA+TGG 0.478772 tig0016995:-58085 Msa1360280:CDS
CTTGCTAGGATGGCAAGTAC+TGG 0.481516 tig0016995:-59279 Msa1360280:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.481828 tig0016995:-56917 Msa1360280:CDS
TTGTTCCAACTGATAGACTA+AGG 0.483967 tig0016995:-57682 Msa1360280:intron
TGAATTCAAGAATGGTGGTC+AGG 0.484071 tig0016995:-56579 Msa1360280:CDS
ATTGGTCGATTCCTAGGTGT+TGG 0.484458 tig0016995:-59120 Msa1360280:CDS
CACATGTCACATGTGTTTCA+CGG 0.485689 tig0016995:-56367 Msa1360280:three_prime_UTR
TGAGATTAATTTCCAAATCG+TGG 0.488271 tig0016995:-56394 Msa1360280:three_prime_UTR
ACTGCTAGAAAGAATGTCAT+TGG 0.496868 tig0016995:+56462 None:intergenic
TAATGAGGCACTTGCTAGGA+TGG 0.505197 tig0016995:-59289 Msa1360280:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 tig0016995:-56747 Msa1360280:CDS
ATCAGTCCGAAGATAAGAAT+GGG 0.508597 tig0016995:-57184 Msa1360280:CDS
CTTCTCATATCCTCTGCAGC+TGG 0.510191 tig0016995:-59186 Msa1360280:CDS
AAGTTCAAACTTTGAAGTAC+CGG 0.513148 tig0016995:-57314 Msa1360280:CDS
CATCAAATACAATATCATGT+TGG 0.518744 tig0016995:+59248 None:intergenic
TATCAGTCCGAAGATAAGAA+TGG 0.521040 tig0016995:-57185 Msa1360280:CDS
ATCTTCGGACTGATACTCAC+TGG 0.523009 tig0016995:+57193 None:intergenic
TGGTATGTCTCTGAATGTAT+TGG 0.523497 tig0016995:+56482 None:intergenic
CTCGTGTAGGCCGACTATTA+GGG 0.524698 tig0016995:-56123 Msa1360280:three_prime_UTR
GAGATTAATTTCCAAATCGT+GGG 0.530007 tig0016995:-56393 Msa1360280:three_prime_UTR
AGCACTCTCTGGATTGGCAA+TGG 0.530645 tig0016995:-56924 Msa1360280:CDS
AACATGATATTGTATTTGAT+GGG 0.530924 tig0016995:-59246 Msa1360280:CDS
CAAAGAACCAGCTTGCTCAC+TGG 0.541714 tig0016995:-57806 Msa1360280:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 tig0016995:-57219 Msa1360280:CDS
CTGATAGGAATTGGAAATGG+TGG 0.549275 tig0016995:-58082 Msa1360280:CDS
ATTGAAAACACTACTTCAAG+TGG 0.549303 tig0016995:-56863 Msa1360280:CDS
TTGTTTGGCTGGTATAGCTG+AGG 0.550780 tig0016995:-57017 Msa1360280:CDS
TACGATAGAAGGCTTATAGT+TGG 0.551668 tig0016995:-56506 Msa1360280:three_prime_UTR
AAACTAATAATTTATGAAGG+AGG 0.553015 tig0016995:+56300 None:intergenic
ATTTATTGTTGAACCATCTG+AGG 0.553024 tig0016995:+57489 None:intergenic
CAATCCACAAATTGATGACA+AGG 0.554131 tig0016995:-56639 Msa1360280:CDS
AGTAACATTGCCATTTGACC+TGG 0.557875 tig0016995:+58118 None:intergenic
ATATAAGTATTACAAAGATA+AGG 0.558130 tig0016995:+57272 None:intergenic
ATGGTTCAACAATAAATCGT+TGG 0.560017 tig0016995:-57483 Msa1360280:CDS
CAGCTAATGAGGCACTTGCT+AGG 0.560867 tig0016995:-59293 Msa1360280:CDS
GAGTAGCTGTAGCAAGATGA+AGG 0.565218 tig0016995:+59214 None:intergenic
ATATCCAAGATCATCTTGGT+TGG 0.566372 tig0016995:-57916 Msa1360280:CDS
ACATGTCACATGTGTTTCAC+GGG 0.566506 tig0016995:-56366 Msa1360280:three_prime_UTR
CACCTTAAGATTATGACACA+TGG 0.569230 tig0016995:-56186 Msa1360280:three_prime_UTR
GGTGGATTGCTGCAAGTAGG+AGG 0.569731 tig0016995:+58163 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 tig0016995:-56587 Msa1360280:CDS
TCAAACTTTGAAGTACCGGC+AGG 0.576815 tig0016995:-57310 Msa1360280:CDS
TTGGATACTTGATCAGCTGT+AGG 0.577217 tig0016995:+56716 None:intergenic
TGCAAAACCAGTGAGCAAGC+TGG 0.577546 tig0016995:+57799 None:intergenic
GTATATATCCAAGATCATCT+TGG 0.577864 tig0016995:-57920 Msa1360280:CDS
TGAAGAAAATGGCTTGAAGG+AGG 0.581996 tig0016995:-56534 Msa1360280:CDS
CGAAGATAAGAATGGGACTT+GGG 0.582353 tig0016995:-57177 Msa1360280:CDS
GATTTCTGATAATATTAACA+AGG 0.582713 tig0016995:-56825 Msa1360280:CDS
GATATAAGCATGAGTGCTGC+TGG 0.582922 tig0016995:+57875 None:intergenic
AGGATGGCAAGTACTGGACT+TGG 0.587802 tig0016995:-59273 Msa1360280:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.587940 tig0016995:-56615 Msa1360280:CDS
TGTGAAATTTCCAGCTGCAG+AGG 0.589353 tig0016995:+59176 None:intergenic
AGAAAGAGAGCAATTCAGGC+AGG 0.594021 tig0016995:-57100 Msa1360280:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 tig0016995:-57420 Msa1360280:CDS
CTTCAAGTGGAGGAAAAGAT+GGG 0.602416 tig0016995:-56850 Msa1360280:CDS
GATACCAATGATAAAAGGCA+TGG 0.603181 tig0016995:+59410 None:intergenic
GTATACCTTAGTCTATCAGT+TGG 0.607004 tig0016995:+57677 None:intergenic
GGCTGTATATCAGCAAAACC+AGG 0.607418 tig0016995:-58136 Msa1360280:CDS
TGCTATGACAGCTATAGTTG+TGG 0.614444 tig0016995:+57958 None:intergenic
TTTATGAAGGAGGAGTGCTA+TGG 0.614803 tig0016995:+56310 None:intergenic
AATTAGTATGATACTCGTGT+AGG 0.618189 tig0016995:-56136 Msa1360280:three_prime_UTR
GAACAAGATATAGCCTCAGA+TGG 0.621248 tig0016995:-57502 Msa1360280:CDS
GCTGATATACAGCCTTCAGG+TGG 0.623699 tig0016995:+58145 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 tig0016995:-56584 Msa1360280:CDS
AGCAAGAAAGAATAAGACAG+TGG 0.634801 tig0016995:+57853 None:intergenic
ATTATAGTAAAAGATCCTGC+CGG 0.635315 tig0016995:+57295 None:intergenic
GAAAACACTACTTCAAGTGG+AGG 0.636406 tig0016995:-56860 Msa1360280:CDS
TTATTCCATTGTGGTCAACA+GGG 0.637429 tig0016995:-57411 Msa1360280:CDS
TGTCATGACACCCTAATAGT+CGG 0.637642 tig0016995:+56113 None:intergenic
ACTTGCAGCAATCCACCTGA+AGG 0.637785 tig0016995:-58157 Msa1360280:CDS
ATGATGGTAAAATTCAGGTG+AGG 0.641850 tig0016995:+57724 None:intergenic
GCGATCCCTGTTGACCACAA+TGG 0.645059 tig0016995:+57406 None:intergenic
ATCGCAATGTCTATTAACAT+CGG 0.651661 tig0016995:-57388 Msa1360280:CDS
ATTTCTGATAATATTAACAA+GGG 0.652732 tig0016995:-56824 Msa1360280:CDS
TCAGGTGGATTGCTGCAAGT+AGG 0.653513 tig0016995:+58160 None:intergenic
ATACCAGCCAAACAAAGTGA+AGG 0.655978 tig0016995:+57025 None:intergenic
TGAAGAAAATGGTTCCAATG+AGG 0.659753 tig0016995:-56687 Msa1360280:CDS
ACTATTAGGGTGTCATGACA+CGG 0.659868 tig0016995:-56110 None:intergenic
AAACCACAAAGAAGCAAGGG+TGG 0.667497 tig0016995:-59441 Msa1360280:CDS
GCAATGTCTATTAACATCGG+AGG 0.673604 tig0016995:-57385 Msa1360280:CDS
CAAGTGGAGGAAAAGATGGG+TGG 0.675884 tig0016995:-56847 Msa1360280:CDS
TATAGGGAATGTCAATGCTG+TGG 0.699156 tig0016995:-58213 Msa1360280:intron
TAGAACCTATTCCAACACCT+AGG 0.705760 tig0016995:+59109 None:intergenic
CGTGAAACACATGTGACATG+TGG 0.714313 tig0016995:+56368 None:intergenic
TGTTGAAAATGTCTGCAATG+TGG 0.749104 tig0016995:-57054 Msa1360280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTATTTATTATTT+TGG - tig0016995:59436-59455 Msa1360280:CDS 0.0%
!! TTCTTTCAAAAAAAAAAAAA+AGG + tig0016995:56931-56950 None:intergenic 10.0%
!! TGATTAATTAAAGATATATT+AGG - tig0016995:57019-57038 Msa1360280:CDS 10.0%
!!! AATTAATATTCTGAAATTAT+TGG - tig0016995:57400-57419 Msa1360280:CDS 10.0%
!! AAAAAACTAATAATTTATGA+AGG + tig0016995:59399-59418 None:intergenic 10.0%
!! CAAAAGATAGATATATATAT+AGG + tig0016995:56132-56151 None:intergenic 15.0%
!! TAGATACCAATAAAAAAAAA+TGG - tig0016995:56167-56186 Msa1360280:three_prime_UTR 15.0%
!! AATGAATATATAATATTACC+AGG + tig0016995:56620-56639 None:intergenic 15.0%
!! ATATTATTAAGTCCAATTAT+GGG - tig0016995:56702-56721 Msa1360280:CDS 15.0%
!! TATGAAAAAGAATCATATAA+AGG - tig0016995:57344-57363 Msa1360280:CDS 15.0%
!!! AATTTTCTTTTCTTTTAACT+TGG + tig0016995:57667-57686 None:intergenic 15.0%
!! ATATAAGTATTACAAAGATA+AGG + tig0016995:58424-58443 None:intergenic 15.0%
!! TTATCTTTGTAATACTTATA+TGG - tig0016995:58423-58442 Msa1360280:intron 15.0%
!! ATTTCTGATAATATTAACAA+GGG - tig0016995:58869-58888 Msa1360280:intron 15.0%
!!! AGTTGTTATTTTAAATTCTT+AGG - tig0016995:59465-59484 Msa1360280:CDS 15.0%
!!! CCTTATCCATTTTTTTTTAT+TGG + tig0016995:56176-56195 None:intergenic 20.0%
!! CCAATAAAAAAAAATGGATA+AGG - tig0016995:56173-56192 Msa1360280:three_prime_UTR 20.0%
!!! CTTTATTTTTACTTTGAATG+AGG - tig0016995:56337-56356 Msa1360280:three_prime_UTR 20.0%
!! ATCAAATACAATATCATGTT+GGG + tig0016995:56447-56466 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG - tig0016995:56447-56466 Msa1360280:three_prime_UTR 20.0%
!! TTTATTGCAGATTCTTATAT+TGG - tig0016995:56555-56574 Msa1360280:CDS 20.0%
!!! AAAAGATAAGAAAAGTATCA+TGG + tig0016995:56669-56688 None:intergenic 20.0%
!! CATATTATTAAGTCCAATTA+TGG - tig0016995:56701-56720 Msa1360280:CDS 20.0%
!! CTCGAATATTTAATTGATAT+AGG + tig0016995:57234-57253 None:intergenic 20.0%
!!! TAATTTTAAAAAGGAATCTG+AGG + tig0016995:57299-57318 None:intergenic 20.0%
!! ATTGGTATAATGAAAAAAGT+TGG - tig0016995:57418-57437 Msa1360280:CDS 20.0%
!! AAACAAACAAACAAAAAAGA+AGG + tig0016995:57451-57470 None:intergenic 20.0%
!!! TTTGTTTGTTTGTTGTTATA+GGG - tig0016995:57464-57483 Msa1360280:CDS 20.0%
!!! TGAAAGTTTTCTGTTTTTAT+AGG + tig0016995:57936-57955 None:intergenic 20.0%
!!! TTTTTATGATGGTAAAATTC+AGG + tig0016995:57977-57996 None:intergenic 20.0%
!!! TGTTATTTGAACAAAAATTC+AGG - tig0016995:58087-58106 Msa1360280:CDS 20.0%
!! TGAAATCAAACGTTTAATAT+GGG + tig0016995:58130-58149 None:intergenic 20.0%
!! ATGAAATCAAACGTTTAATA+TGG + tig0016995:58131-58150 None:intergenic 20.0%
!!! AAATAAAGCTTGTGTTATTA+AGG - tig0016995:58163-58182 Msa1360280:CDS 20.0%
!! CAATGGAATAACTTTAATAA+TGG + tig0016995:58273-58292 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG - tig0016995:58273-58292 Msa1360280:intron 20.0%
!!! GTTTTTTAATTTTCTTCACT+TGG - tig0016995:58541-58560 Msa1360280:intron 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG + tig0016995:58718-58737 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG - tig0016995:58868-58887 Msa1360280:intron 20.0%
!! TCATTTCGACAAATATTTAT+GGG - tig0016995:58892-58911 Msa1360280:intron 20.0%
!! AAACTAATAATTTATGAAGG+AGG + tig0016995:59396-59415 None:intergenic 20.0%
! GATAAGATACCAATGATAAA+AGG + tig0016995:56291-56310 None:intergenic 25.0%
! CATCAAATACAATATCATGT+TGG + tig0016995:56448-56467 None:intergenic 25.0%
! CAACATGATATTGTATTTGA+TGG - tig0016995:56446-56465 Msa1360280:three_prime_UTR 25.0%
! GTATCATGGAATGAATAAAA+AGG + tig0016995:56655-56674 None:intergenic 25.0%
! ATACAATTTACTCCCATAAT+TGG + tig0016995:56717-56736 None:intergenic 25.0%
! TCAAAATGTGACAATTCAAA+AGG + tig0016995:56796-56815 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG - tig0016995:56835-56854 Msa1360280:CDS 25.0%
!!! GTTTGTTTGTTTGTTGTTAT+AGG - tig0016995:57463-57482 Msa1360280:CDS 25.0%
! ATTTCATGTTCTTTAGCATT+TGG - tig0016995:57635-57654 Msa1360280:intron 25.0%
!! TGTGTAATTTTCACATAAAG+AGG + tig0016995:57869-57888 None:intergenic 25.0%
! ATATGCAAAAGCTATAAAGA+TGG + tig0016995:58041-58060 None:intergenic 25.0%
!!! AAACGTTTGATTTCATTTTC+AGG - tig0016995:58135-58154 Msa1360280:CDS 25.0%
!! GGATTTTTGAATAATACTCA+TGG - tig0016995:58614-58633 Msa1360280:intron 25.0%
! GTCATTTCGACAAATATTTA+TGG - tig0016995:58891-58910 Msa1360280:intron 25.0%
!! AAATATTTATGGGTTATAGC+TGG - tig0016995:58902-58921 Msa1360280:intron 25.0%
! TGTATTATTTAGTATGCAGT+TGG - tig0016995:58945-58964 Msa1360280:intron 25.0%
! GTATTATTTAGTATGCAGTT+GGG - tig0016995:58946-58965 Msa1360280:intron 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG - tig0016995:59148-59167 Msa1360280:CDS 25.0%
TGACAATTATAAAGGAACAG+AGG - tig0016995:56843-56862 Msa1360280:CDS 30.0%
GACAATTATAAAGGAACAGA+GGG - tig0016995:56844-56863 Msa1360280:CDS 30.0%
TAATCATACTTCAATGCAGA+AGG - tig0016995:56876-56895 Msa1360280:CDS 30.0%
! AGAAGCATATATGTATAACC+TGG - tig0016995:56947-56966 Msa1360280:CDS 30.0%
AATCAATATGTTGTAGATCC+AGG + tig0016995:56968-56987 None:intergenic 30.0%
GAACACTTGAATTGAATCTA+TGG - tig0016995:57041-57060 Msa1360280:CDS 30.0%
! ATCTGAAACATAAAGAGAGA+CGG - tig0016995:57086-57105 Msa1360280:CDS 30.0%
AGAAAGAATCACAAATCAAG+GGG + tig0016995:57130-57149 None:intergenic 30.0%
GAGAAAGAATCACAAATCAA+GGG + tig0016995:57131-57150 None:intergenic 30.0%
TGAGAAAGAATCACAAATCA+AGG + tig0016995:57132-57151 None:intergenic 30.0%
TTTGTGATTCTTTCTCAACT+AGG - tig0016995:57135-57154 Msa1360280:CDS 30.0%
TTGAATATACGTACCAAGTT+TGG + tig0016995:57382-57401 None:intergenic 30.0%
ATTCTGATAGGAATTGGAAA+TGG - tig0016995:57608-57627 Msa1360280:intron 30.0%
! CTTTGGAAATATTCTTCACT+TGG - tig0016995:57702-57721 Msa1360280:CDS 30.0%
GTATATATCCAAGATCATCT+TGG - tig0016995:57773-57792 Msa1360280:CDS 30.0%
!!! GATCTGAGTCTTTTTTATGA+TGG + tig0016995:57988-58007 None:intergenic 30.0%
ATTTATTGTTGAACCATCTG+AGG + tig0016995:58207-58226 None:intergenic 30.0%
ATGGTTCAACAATAAATCGT+TGG - tig0016995:58210-58229 Msa1360280:CDS 30.0%
ATCGCAATGTCTATTAACAT+CGG - tig0016995:58305-58324 Msa1360280:intron 30.0%
TGAAATGATATGTCTGTCTA+AGG + tig0016995:58360-58379 None:intergenic 30.0%
!! AAGTTCAAACTTTGAAGTAC+CGG - tig0016995:58379-58398 Msa1360280:intron 30.0%
ATTATAGTAAAAGATCCTGC+CGG + tig0016995:58401-58420 None:intergenic 30.0%
CTTTAGCATCAAAGATAAGA+GGG - tig0016995:58474-58493 Msa1360280:intron 30.0%
!! CAGCAATTTTTGAGAGTATA+AGG - tig0016995:58570-58589 Msa1360280:intron 30.0%
ATTGAAAACACTACTTCAAG+TGG - tig0016995:58830-58849 Msa1360280:intron 30.0%
! TTCAGTTGAATTTTCCTCAT+TGG + tig0016995:59023-59042 None:intergenic 30.0%
TAGTGATGAAACTAGTTCAA+AGG - tig0016995:59078-59097 Msa1360280:intron 30.0%
GAGTTAACTGAATTCAAGAA+TGG - tig0016995:59106-59125 Msa1360280:CDS 30.0%
TTAACTGAATTCAAGAATGG+TGG - tig0016995:59109-59128 Msa1360280:CDS 30.0%
! TCTAGCAGTAACTCTTTTAT+TGG - tig0016995:59245-59264 Msa1360280:CDS 30.0%
TGAGATTAATTTCCAAATCG+TGG - tig0016995:59299-59318 Msa1360280:intron 30.0%
GAGATTAATTTCCAAATCGT+GGG - tig0016995:59300-59319 Msa1360280:intron 30.0%
ATCCATGTGTCATAATCTTA+AGG + tig0016995:59512-59531 None:intergenic 30.0%
AATTAGTATGATACTCGTGT+AGG - tig0016995:59557-59576 Msa1360280:five_prime_UTR 30.0%
ACAAAAACCACAAAGAAGCA+AGG - tig0016995:56248-56267 Msa1360280:three_prime_UTR 35.0%
CAAAAACCACAAAGAAGCAA+GGG - tig0016995:56249-56268 Msa1360280:three_prime_UTR 35.0%
GATACCAATGATAAAAGGCA+TGG + tig0016995:56286-56305 None:intergenic 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG - tig0016995:56389-56408 Msa1360280:three_prime_UTR 35.0%
! TCTTATATTGGTCGATTCCT+AGG - tig0016995:56567-56586 Msa1360280:CDS 35.0%
AGGTTCTATTATCAGTTTCC+TGG - tig0016995:56599-56618 Msa1360280:CDS 35.0%
GACAATTCAAAAGGAAGAGA+GGG + tig0016995:56787-56806 None:intergenic 35.0%
TGACAATTCAAAAGGAAGAG+AGG + tig0016995:56788-56807 None:intergenic 35.0%
AATCTATGGCTAAAGTCTGT+GGG - tig0016995:57055-57074 Msa1360280:CDS 35.0%
ATTGTCTTGCCTAAGACATA+TGG + tig0016995:57164-57183 None:intergenic 35.0%
GAAAAAAGTTCCACCAAACT+TGG - tig0016995:57366-57385 Msa1360280:CDS 35.0%
AATATACGTACCAAGTTTGG+TGG + tig0016995:57379-57398 None:intergenic 35.0%
GCGTTAATTCTGATAGGAAT+TGG - tig0016995:57602-57621 Msa1360280:intron 35.0%
TTCCAATAACACTAGAGCTT+TGG - tig0016995:57685-57704 Msa1360280:CDS 35.0%
! TTCCAAAGCTCTAGTGTTAT+TGG + tig0016995:57690-57709 None:intergenic 35.0%
ATATCCAAGATCATCTTGGT+TGG - tig0016995:57777-57796 Msa1360280:CDS 35.0%
! TTTTCCAACCAAGATGATCT+TGG + tig0016995:57784-57803 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG - tig0016995:57785-57804 Msa1360280:CDS 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG - tig0016995:57791-57810 Msa1360280:CDS 35.0%
AGCAAGAAAGAATAAGACAG+TGG + tig0016995:57843-57862 None:intergenic 35.0%
ATGATGGTAAAATTCAGGTG+AGG + tig0016995:57972-57991 None:intergenic 35.0%
TTGTTCCAACTGATAGACTA+AGG - tig0016995:58011-58030 Msa1360280:CDS 35.0%
GTATACCTTAGTCTATCAGT+TGG + tig0016995:58019-58038 None:intergenic 35.0%
TTATTCCATTGTGGTCAACA+GGG - tig0016995:58282-58301 Msa1360280:intron 35.0%
CCTCTTATCTTTGATGCTAA+AGG + tig0016995:58476-58495 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG - tig0016995:58473-58492 Msa1360280:intron 35.0%
TATCAGTCCGAAGATAAGAA+TGG - tig0016995:58508-58527 Msa1360280:intron 35.0%
ATCAGTCCGAAGATAAGAAT+GGG - tig0016995:58509-58528 Msa1360280:intron 35.0%
TGTTGAAAATGTCTGCAATG+TGG - tig0016995:58639-58658 Msa1360280:intron 35.0%
GAAACACTAGACATAGTCTT+TGG + tig0016995:58746-58765 None:intergenic 35.0%
AAAAGAAGACACCAAGTTTC+CGG + tig0016995:58798-58817 None:intergenic 35.0%
TCCAAAGTGAGTGAAGAAAA+TGG - tig0016995:58995-59014 Msa1360280:intron 35.0%
! ACCATTTTCTTCACTCACTT+TGG + tig0016995:58999-59018 None:intergenic 35.0%
TGAAGAAAATGGTTCCAATG+AGG - tig0016995:59006-59025 Msa1360280:intron 35.0%
! CAATCCACAAATTGATGACA+AGG - tig0016995:59054-59073 Msa1360280:intron 35.0%
CTAACCTTGTCATCAATTTG+TGG + tig0016995:59061-59080 None:intergenic 35.0%
TAGTGAAGAAAATGGCTTGA+AGG - tig0016995:59156-59175 Msa1360280:CDS 35.0%
TACGATAGAAGGCTTATAGT+TGG - tig0016995:59187-59206 Msa1360280:CDS 35.0%
TGGTATGTCTCTGAATGTAT+TGG + tig0016995:59214-59233 None:intergenic 35.0%
ACTGCTAGAAAGAATGTCAT+TGG + tig0016995:59234-59253 None:intergenic 35.0%
CACCTTAAGATTATGACACA+TGG - tig0016995:59507-59526 Msa1360280:CDS 35.0%
TGCTGCTGATGAAGAAGAAA+TGG - tig0016995:56218-56237 Msa1360280:three_prime_UTR 40.0%
! GTCACCATGCCTTTTATCAT+TGG - tig0016995:56279-56298 Msa1360280:three_prime_UTR 40.0%
GCAATAAAAGCAGCAACAAC+AGG + tig0016995:56543-56562 None:intergenic 40.0%
TAGAACCTATTCCAACACCT+AGG + tig0016995:56587-56606 None:intergenic 40.0%
GAATCTATGGCTAAAGTCTG+TGG - tig0016995:57054-57073 Msa1360280:CDS 40.0%
ACTAGGACTCCATATGTCTT+AGG - tig0016995:57152-57171 Msa1360280:CDS 40.0%
TATAGGGAATGTCAATGCTG+TGG - tig0016995:57480-57499 Msa1360280:CDS 40.0%
TTTGCTGATATACAGCCTTC+AGG + tig0016995:57554-57573 None:intergenic 40.0%
ATCAGCAAAACCAGGTCAAA+TGG - tig0016995:57565-57584 Msa1360280:intron 40.0%
! AGTAACATTGCCATTTGACC+TGG + tig0016995:57578-57597 None:intergenic 40.0%
CTCTCTGCGTTAATTCTGAT+AGG - tig0016995:57596-57615 Msa1360280:intron 40.0%
CTGATAGGAATTGGAAATGG+TGG - tig0016995:57611-57630 Msa1360280:intron 40.0%
TGCTATGACAGCTATAGTTG+TGG + tig0016995:57738-57757 None:intergenic 40.0%
! AATTCAGGTGAGGTTTTCGA+TGG + tig0016995:57962-57981 None:intergenic 40.0%
GAACAAGATATAGCCTCAGA+TGG - tig0016995:58191-58210 Msa1360280:CDS 40.0%
GTTATTCCATTGTGGTCAAC+AGG - tig0016995:58281-58300 Msa1360280:intron 40.0%
GCAATGTCTATTAACATCGG+AGG - tig0016995:58308-58327 Msa1360280:intron 40.0%
CCAAGTCCCATTCTTATCTT+CGG + tig0016995:58518-58537 None:intergenic 40.0%
CGAAGATAAGAATGGGACTT+GGG - tig0016995:58516-58535 Msa1360280:intron 40.0%
AAGGAGAAAGAGAGCAATTC+AGG - tig0016995:58589-58608 Msa1360280:intron 40.0%
ATACCAGCCAAACAAAGTGA+AGG + tig0016995:58671-58690 None:intergenic 40.0%
! GCTGAGGCATTCAATGTTAT+TGG - tig0016995:58692-58711 Msa1360280:intron 40.0%
GAAAACACTACTTCAAGTGG+AGG - tig0016995:58833-58852 Msa1360280:intron 40.0%
ACTTCAAGTGGAGGAAAAGA+TGG - tig0016995:58842-58861 Msa1360280:intron 40.0%
CTTCAAGTGGAGGAAAAGAT+GGG - tig0016995:58843-58862 Msa1360280:intron 40.0%
TTAGTATGCAGTTGGGCTTA+TGG - tig0016995:58953-58972 Msa1360280:intron 40.0%
TTGGATACTTGATCAGCTGT+AGG + tig0016995:58980-58999 None:intergenic 40.0%
TGAATTCAAGAATGGTGGTC+AGG - tig0016995:59114-59133 Msa1360280:CDS 40.0%
TGAAGAAAATGGCTTGAAGG+AGG - tig0016995:59159-59178 Msa1360280:CDS 40.0%
AGGAGGAATAGTACGATAGA+AGG - tig0016995:59176-59195 Msa1360280:CDS 40.0%
CACATGTCACATGTGTTTCA+CGG - tig0016995:59326-59345 Msa1360280:intron 40.0%
ACATGTCACATGTGTTTCAC+GGG - tig0016995:59327-59346 Msa1360280:intron 40.0%
!! TTTATGAAGGAGGAGTGCTA+TGG + tig0016995:59386-59405 None:intergenic 40.0%
TGTCATGACACCCTAATAGT+CGG + tig0016995:59583-59602 None:intergenic 40.0%
AAACCACAAAGAAGCAAGGG+TGG - tig0016995:56252-56271 Msa1360280:three_prime_UTR 45.0%
! TAATGAGGCACTTGCTAGGA+TGG - tig0016995:56404-56423 Msa1360280:three_prime_UTR 45.0%
GAGTAGCTGTAGCAAGATGA+AGG + tig0016995:56482-56501 None:intergenic 45.0%
TGTGAAATTTCCAGCTGCAG+AGG + tig0016995:56520-56539 None:intergenic 45.0%
! ATTGGTCGATTCCTAGGTGT+TGG - tig0016995:56573-56592 Msa1360280:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG - tig0016995:56579-56598 Msa1360280:CDS 45.0%
GGCTGTATATCAGCAAAACC+AGG - tig0016995:57557-57576 Msa1360280:intron 45.0%
GCTGTCATAGCAGCTCTATT+TGG - tig0016995:57746-57765 Msa1360280:CDS 45.0%
! GATATAAGCATGAGTGCTGC+TGG + tig0016995:57821-57840 None:intergenic 45.0%
ATTAACATCGGAGGCTCGTT+TGG - tig0016995:58317-58336 Msa1360280:intron 45.0%
!! TCAAACTTTGAAGTACCGGC+AGG - tig0016995:58383-58402 Msa1360280:intron 45.0%
ATCTTCGGACTGATACTCAC+TGG + tig0016995:58503-58522 None:intergenic 45.0%
CCGAAGATAAGAATGGGACT+TGG - tig0016995:58515-58534 Msa1360280:intron 45.0%
AGAAAGAGAGCAATTCAGGC+AGG - tig0016995:58593-58612 Msa1360280:intron 45.0%
GCTTGCACCTTCACTTTGTT+TGG - tig0016995:58661-58680 Msa1360280:intron 45.0%
TTGTTTGGCTGGTATAGCTG+AGG - tig0016995:58676-58695 Msa1360280:intron 45.0%
AGTGTTTCTTCAGCACTCTC+TGG - tig0016995:58758-58777 Msa1360280:intron 45.0%
TTCTTCAGCACTCTCTGGAT+TGG - tig0016995:58763-58782 Msa1360280:intron 45.0%
CGTGAAACACATGTGACATG+TGG + tig0016995:59328-59347 None:intergenic 45.0%
!!! TAATATTATATATTCATTTT+TGG - tig0016995:56622-56641 Msa1360280:CDS 5.0%
!!! ATCATTTTTTAATTTTAAAA+AGG + tig0016995:57308-57327 None:intergenic 5.0%
AGACCACCCTTGCTTCTTTG+TGG + tig0016995:56258-56277 None:intergenic 50.0%
! CAGCTAATGAGGCACTTGCT+AGG - tig0016995:56400-56419 Msa1360280:three_prime_UTR 50.0%
CTTGCTAGGATGGCAAGTAC+TGG - tig0016995:56414-56433 Msa1360280:three_prime_UTR 50.0%
!! AGGATGGCAAGTACTGGACT+TGG - tig0016995:56420-56439 Msa1360280:three_prime_UTR 50.0%
CTTCTCATATCCTCTGCAGC+TGG - tig0016995:56507-56526 Msa1360280:three_prime_UTR 50.0%
!! TCAGGTGGATTGCTGCAAGT+AGG + tig0016995:57536-57555 None:intergenic 50.0%
ACTTGCAGCAATCCACCTGA+AGG - tig0016995:57536-57555 Msa1360280:CDS 50.0%
GCTGATATACAGCCTTCAGG+TGG + tig0016995:57551-57570 None:intergenic 50.0%
! CAAAGAACCAGCTTGCTCAC+TGG - tig0016995:57887-57906 Msa1360280:CDS 50.0%
TGCAAAACCAGTGAGCAAGC+TGG + tig0016995:57897-57916 None:intergenic 50.0%
! GCACCTTCACTTTGTTTGGC+TGG - tig0016995:58665-58684 Msa1360280:intron 50.0%
!! AGCACTCTCTGGATTGGCAA+TGG - tig0016995:58769-58788 Msa1360280:intron 50.0%
CAAGTGGAGGAAAAGATGGG+TGG - tig0016995:58846-58865 Msa1360280:intron 50.0%
GACATGTGGTTCCCACGATT+TGG + tig0016995:59314-59333 None:intergenic 50.0%
ACTCGTGTAGGCCGACTATT+AGG - tig0016995:59569-59588 Msa1360280:five_prime_UTR 50.0%
CTCGTGTAGGCCGACTATTA+GGG - tig0016995:59570-59589 Msa1360280:five_prime_UTR 50.0%
!! GGTGGATTGCTGCAAGTAGG+AGG + tig0016995:57533-57552 None:intergenic 55.0%
GCGATCCCTGTTGACCACAA+TGG + tig0016995:58290-58309 None:intergenic 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG - tig0016995:58776-58795 Msa1360280:intron 55.0%
AAGTAGGAGGCTGCGTCGCT+GGG + tig0016995:57520-57539 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG - tig0016995:58784-58803 Msa1360280:intron 60.0%
AGGCTGCGTCGCTGGGATCA+TGG + tig0016995:57513-57532 None:intergenic 65.0%
CAAGTAGGAGGCTGCGTCGC+TGG + tig0016995:57521-57540 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0016995 gene 56111 59604 56111 ID=Msa1360280;Name=Msa1360280
tig0016995 mRNA 56111 59604 56111 ID=Msa1360280-mRNA-1;Parent=Msa1360280;Name=Msa1360280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=75|1|1|1|1|1|4|418|636
tig0016995 exon 56111 57558 56111 ID=Msa1360280-mRNA-1:exon:11830;Parent=Msa1360280-mRNA-1
tig0016995 exon 57683 58230 57683 ID=Msa1360280-mRNA-1:exon:11829;Parent=Msa1360280-mRNA-1
tig0016995 exon 59095 59312 59095 ID=Msa1360280-mRNA-1:exon:11828;Parent=Msa1360280-mRNA-1
tig0016995 exon 59415 59604 59415 ID=Msa1360280-mRNA-1:exon:11827;Parent=Msa1360280-mRNA-1
tig0016995 five_prime_UTR 59530 59604 59530 ID=Msa1360280-mRNA-1:five_prime_utr;Parent=Msa1360280-mRNA-1
tig0016995 CDS 59415 59529 59415 ID=Msa1360280-mRNA-1:cds;Parent=Msa1360280-mRNA-1
tig0016995 CDS 59095 59312 59095 ID=Msa1360280-mRNA-1:cds;Parent=Msa1360280-mRNA-1
tig0016995 CDS 57683 58230 57683 ID=Msa1360280-mRNA-1:cds;Parent=Msa1360280-mRNA-1
tig0016995 CDS 56529 57558 56529 ID=Msa1360280-mRNA-1:cds;Parent=Msa1360280-mRNA-1
tig0016995 three_prime_UTR 56111 56528 56111 ID=Msa1360280-mRNA-1:three_prime_utr;Parent=Msa1360280-mRNA-1
Gene Sequence

>Msa1360280

ATGGATAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGAAGCAAGGGTGGTCTTGTCACCATGCCTTTTATCATTGCTAATGAGGCACTTGCTAGGATGGCAAGTACTGGACTTGGACCCAACATGATATTGTATTTGATGGGATCTTACAACCTTCATCTTGCTACAGCTACTCAGATACTTCTCATATCCTCTGCAGCTGGAAATTTCACACCTGTTGTTGCTGCTTTTATTGCAGATTCTTATATTGGTCGATTCCTAGGTGTTGGAATAGGTTCTATTATCAGTTTCCTGGGAATGTCAATGCTGTGGTTAACAGCCATGATCCCAGCGACGCAGCCTCCTACTTGCAGCAATCCACCTGAAGGCTGTATATCAGCAAAACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATTGGAAATGGTGGTATTTCATGTTCTTTAGCATTTGGTGCAGACCAAGTTAAAAGAAAAGAAAATTCCAATAACACTAGAGCTTTGGAAATATTCTTCACTTGGTATTATGCTTCCACAACTATAGCTGTCATAGCAGCTCTATTTGGAATAGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTACCAGCAGCACTCATGCTTATATCCACTGTCTTATTCTTTCTTGCTTCTCCTCTTTATGTGAAAATTACACAAAGAACCAGCTTGCTCACTGGTTTTGCACAAGTATCTGTTGCTGCCTATAAAAACAGAAAACTTTCATTGCCATCGAAAACCTCACCTGAATTTTACCATCATAAAAAAGACTCAGATCTTCTTGTTCCAACTGATAGACTAAGGTTTCTAAATAAAGCTTGTGTTATTAAGGATCACGAACAAGATATAGCCTCAGATGGTTCAACAATAAATCGTTGGAGTCTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGGATCGCAATGTCTATTAACATCGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCATTTCAAGTTCAAACTTTGAAGTACCGGCAGGATCTTTTACTATAATCCTTATCTTTGTAATACTTATATGGATAGTTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCAGTCCGAAGATAAGAATGGGACTTGGGTTGTTTTTTAATTTTCTTCACTTGGTAGTTGCAGCAATTTTTGAGAGTATAAGGAGAAAGAGAGCAATTCAGGCAGGATTTTTGAATAATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTTCACTTTGTTTGGCTGGTATAGCTGAGGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCAGCACTCTCTGGATTGGCAATGGCTGCCGGAAACTTGGTGTCTTCTTTTGTATTCAGCACTATTGAAAACACTACTTCAAGTGGAGGAAAAGATGGGTGGATTTCTGATAATATTAACAAGGGTCATTTCGACAAATATTTATGGGTTATAGCTGGAATTAATGTTCTTAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGCTGATCAAGTATCCAAAGTGAGTGAAGAAAATGGTTCCAATGAGGAAAATTCAACTGAATTCAAAAATGTCAATCCACAAATTGATGACAAGGTTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGCTTGAAGGAGGAATAG

Protein sequence

>Msa1360280

MDKELQLCSVDAADEEEMVSQQKPQRSKGGLVTMPFIIANEALARMASTGLGPNMILYLMGSYNLHLATATQILLISSAAGNFTPVVAAFIADSYIGRFLGVGIGSIISFLGMSMLWLTAMIPATQPPTCSNPPEGCISAKPGQMAMLLSALILIGIGNGGISCSLAFGADQVKRKENSNNTRALEIFFTWYYASTTIAVIAALFGIVYIQDHLGWKIGFGVPAALMLISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSLPSKTSPEFYHHKKDSDLLVPTDRLRFLNKACVIKDHEQDIASDGSTINRWSLCTVDQVEELKAIIKVIPLWSTGIAMSINIGGSFGLLQAKSLDRHIISSSNFEVPAGSFTIILIFVILIWIVIYDRVLIPLASKIRGKPVSISPKIRMGLGLFFNFLHLVVAAIFESIRRKRAIQAGFLNNTHGVLKMSAMWLAPSLCLAGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVFSTIENTTSSGGKDGWISDNINKGHFDKYLWVIAGINVLNLLYYLVCSWAYGPTADQVSKVSEENGSNEENSTEFKNVNPQIDDKVSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE*