Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363100 | XP_013459310.1 | 99.291 | 282 | 2 | 0 | 1 | 282 | 42 | 323 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363100 | sp|O24646|HY5_ARATH | 72.519 | 131 | 35 | 1 | 150 | 279 | 33 | 163 | 3.75e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363100 | A0A072UVE3 | 99.291 | 282 | 2 | 0 | 1 | 282 | 42 | 323 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0363100 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0363100 | -0.830005 | 3.747126e-55 | -8.615850e-47 |
| Msa0038020 | Msa0363100 | 0.805934 | 1.050375e-49 | -8.615850e-47 |
| Msa0085720 | Msa0363100 | 0.804829 | 1.790263e-49 | -8.615850e-47 |
| Msa0120370 | Msa0363100 | -0.806453 | 8.167284e-50 | -8.615850e-47 |
| Msa0140170 | Msa0363100 | 0.803935 | 2.748959e-49 | -8.615850e-47 |
| Msa0163560 | Msa0363100 | 0.801702 | 7.949734e-49 | -8.615850e-47 |
| Msa0173330 | Msa0363100 | 0.818218 | 2.198004e-52 | -8.615850e-47 |
| Msa0223100 | Msa0363100 | 0.837849 | 4.077913e-57 | -8.615850e-47 |
| Msa0223290 | Msa0363100 | 0.837924 | 3.900190e-57 | -8.615850e-47 |
| Msa0223380 | Msa0363100 | 0.821355 | 4.220472e-53 | -8.615850e-47 |
| Msa0239940 | Msa0363100 | 0.801791 | 7.619836e-49 | -8.615850e-47 |
| Msa0266210 | Msa0363100 | 0.840842 | 6.813471e-58 | -8.615850e-47 |
| Msa0287670 | Msa0363100 | 0.847008 | 1.517241e-59 | -8.615850e-47 |
| Msa0288320 | Msa0363100 | 0.801967 | 7.014367e-49 | -8.615850e-47 |
| Msa0302650 | Msa0363100 | 0.832030 | 1.192954e-55 | -8.615850e-47 |
| Msa0312310 | Msa0363100 | 0.826230 | 3.040514e-54 | -8.615850e-47 |
| Msa0328380 | Msa0363100 | 0.817363 | 3.427627e-52 | -8.615850e-47 |
| Msa0362060 | Msa0363100 | 0.874703 | 5.490167e-68 | -8.615850e-47 |
| Msa0363100 | Msa0363170 | 0.941636 | 2.942890e-101 | -8.615850e-47 |
| Msa0363100 | Msa0370310 | 0.821143 | 4.721632e-53 | -8.615850e-47 |
| Msa0363100 | Msa0370870 | 0.882909 | 7.010075e-71 | -8.615850e-47 |
| Msa0363100 | Msa0377530 | 0.822836 | 1.914301e-53 | -8.615850e-47 |
| Msa0363100 | Msa0379540 | 0.822025 | 2.954137e-53 | -8.615850e-47 |
| Msa0363100 | Msa0381220 | 0.804632 | 1.968448e-49 | -8.615850e-47 |
| Msa0363100 | Msa0388030 | -0.824163 | 9.365864e-54 | -8.615850e-47 |
| Msa0363100 | Msa0404220 | 0.840869 | 6.706285e-58 | -8.615850e-47 |
| Msa0363100 | Msa0404700 | 0.938779 | 3.821112e-99 | -8.615850e-47 |
| Msa0363100 | Msa0416320 | 0.854917 | 8.944145e-62 | -8.615850e-47 |
| Msa0363100 | Msa0419050 | 0.834749 | 2.504097e-56 | -8.615850e-47 |
| Msa0363100 | Msa0426810 | 0.842516 | 2.465464e-58 | -8.615850e-47 |
| Msa0363100 | Msa0431020 | 0.802291 | 6.013846e-49 | -8.615850e-47 |
| Msa0363100 | Msa0462540 | 0.921604 | 2.891834e-88 | -8.615850e-47 |
| Msa0363100 | Msa0464420 | 0.800818 | 1.205955e-48 | -8.615850e-47 |
| Msa0363100 | Msa0464900 | 0.835099 | 2.043431e-56 | -8.615850e-47 |
| Msa0363100 | Msa0505060 | 0.801687 | 8.006482e-49 | -8.615850e-47 |
| Msa0363100 | Msa0508540 | 0.812788 | 3.554760e-51 | -8.615850e-47 |
| Msa0363100 | Msa0510040 | 0.802683 | 4.994268e-49 | -8.615850e-47 |
| Msa0363100 | Msa0510560 | 0.839365 | 1.655346e-57 | -8.615850e-47 |
| Msa0363100 | Msa0517490 | 0.809881 | 1.520009e-50 | -8.615850e-47 |
| Msa0363100 | Msa0519390 | 0.802581 | 5.241609e-49 | -8.615850e-47 |
| Msa0363100 | Msa0530380 | 0.809762 | 1.612110e-50 | -8.615850e-47 |
| Msa0363100 | Msa0579340 | 0.814121 | 1.809863e-51 | -8.615850e-47 |
| Msa0363100 | Msa0598560 | 0.822654 | 2.109979e-53 | -8.615850e-47 |
| Msa0363100 | Msa0609970 | 0.802129 | 6.495101e-49 | -8.615850e-47 |
| Msa0363100 | Msa0622340 | 0.811817 | 5.791658e-51 | -8.615850e-47 |
| Msa0363100 | Msa0650730 | 0.802166 | 6.381174e-49 | -8.615850e-47 |
| Msa0363100 | Msa0650740 | 0.805636 | 1.212880e-49 | -8.615850e-47 |
| Msa0363100 | Msa0754350 | 0.812570 | 3.967527e-51 | -8.615850e-47 |
| Msa0363100 | Msa0755080 | 0.815828 | 7.570478e-52 | -8.615850e-47 |
| Msa0363100 | Msa0796950 | 0.811060 | 8.455709e-51 | -8.615850e-47 |
| Msa0363100 | Msa0834450 | 0.821252 | 4.457839e-53 | -8.615850e-47 |
| Msa0363100 | Msa0944730 | 0.830667 | 2.581111e-55 | -8.615850e-47 |
| Msa0363100 | Msa0975970 | 0.802850 | 4.613700e-49 | -8.615850e-47 |
| Msa0363100 | Msa0982590 | 0.861878 | 7.528889e-64 | -8.615850e-47 |
| Msa0363100 | Msa1032640 | 0.806965 | 6.365196e-50 | -8.615850e-47 |
| Msa0363100 | Msa1037020 | 0.820036 | 8.479784e-53 | -8.615850e-47 |
| Msa0363100 | Msa1072530 | -0.806509 | 7.945536e-50 | -8.615850e-47 |
| Msa0363100 | Msa1077670 | 0.802550 | 5.320559e-49 | -8.615850e-47 |
| Msa0363100 | Msa1130210 | -0.803474 | 3.426453e-49 | -8.615850e-47 |
| Msa0363100 | Msa1132860 | -0.801220 | 9.980170e-49 | -8.615850e-47 |
| Msa0363100 | Msa1160580 | 0.805645 | 1.208139e-49 | -8.615850e-47 |
| Msa0363100 | Msa1162980 | 0.809403 | 1.924813e-50 | -8.615850e-47 |
| Msa0363100 | Msa1164530 | 0.826816 | 2.204544e-54 | -8.615850e-47 |
| Msa0363100 | Msa1174310 | 0.802081 | 6.643985e-49 | -8.615850e-47 |
| Msa0363100 | Msa1182640 | 0.869678 | 2.587196e-66 | -8.615850e-47 |
| Msa0363100 | Msa1218650 | 0.812091 | 5.046462e-51 | -8.615850e-47 |
| Msa0363100 | Msa1229850 | 0.834181 | 3.477008e-56 | -8.615850e-47 |
| Msa0363100 | Msa1272520 | 0.861437 | 1.026983e-63 | -8.615850e-47 |
| Msa0363100 | Msa1310660 | 0.865803 | 4.528747e-65 | -8.615850e-47 |
| Msa0363100 | Msa1314770 | 0.806033 | 1.000964e-49 | -8.615850e-47 |
| Msa0363100 | Msa1350690 | 0.847523 | 1.095694e-59 | -8.615850e-47 |
| Msa0363100 | Msa1360280 | 0.838559 | 2.676404e-57 | -8.615850e-47 |
| Msa0363100 | Msa1383480 | 0.853944 | 1.708838e-61 | -8.615850e-47 |
| Msa0363100 | Msa1415920 | 0.814123 | 1.808544e-51 | -8.615850e-47 |
| Msa0363100 | Msa1419110 | 0.806587 | 7.649729e-50 | -8.615850e-47 |
| Msa0363100 | Msa1439230 | 0.804848 | 1.773746e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363100 | MtrunA17_Chr3g0094861 | 99.291 | 282 | 2 | 0 | 1 | 282 | 42 | 323 | 0.0 | 578 |
| Msa0363100 | MtrunA17_Chr3g0137951 | 58.278 | 151 | 58 | 3 | 1 | 149 | 45 | 192 | 1.31e-37 | 141 |
| Msa0363100 | MtrunA17_Chr7g0236891 | 50.000 | 132 | 60 | 1 | 152 | 277 | 40 | 171 | 6.50e-24 | 95.1 |
| Msa0363100 | MtrunA17_Chr3g0088821 | 29.577 | 213 | 119 | 5 | 1 | 200 | 26 | 220 | 1.26e-21 | 94.7 |
| Msa0363100 | MtrunA17_Chr1g0201731 | 50.685 | 73 | 36 | 0 | 1 | 73 | 48 | 120 | 1.98e-20 | 91.3 |
| Msa0363100 | MtrunA17_Chr8g0352231 | 31.799 | 239 | 123 | 12 | 1 | 204 | 26 | 259 | 2.45e-20 | 90.9 |
| Msa0363100 | MtrunA17_Chr2g0296991 | 52.857 | 70 | 32 | 1 | 1 | 69 | 42 | 111 | 5.01e-19 | 87.0 |
| Msa0363100 | MtrunA17_Chr8g0383701 | 32.927 | 164 | 90 | 5 | 1 | 149 | 44 | 202 | 5.32e-17 | 81.3 |
| Msa0363100 | MtrunA17_Chr4g0073711 | 61.111 | 54 | 21 | 0 | 1 | 54 | 42 | 95 | 1.29e-16 | 80.1 |
| Msa0363100 | MtrunA17_Chr8g0364641 | 59.259 | 54 | 22 | 0 | 1 | 54 | 42 | 95 | 4.47e-16 | 78.2 |
| Msa0363100 | MtrunA17_Chr3g0078671 | 53.704 | 54 | 25 | 0 | 1 | 54 | 44 | 97 | 8.46e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363100 | AT5G11260.1 | 72.519 | 131 | 35 | 1 | 150 | 279 | 33 | 163 | 3.81e-56 | 179 |
| Msa0363100 | AT5G11260.2 | 72.174 | 115 | 31 | 1 | 150 | 263 | 33 | 147 | 1.83e-50 | 164 |
| Msa0363100 | AT4G32410.1 | 56.667 | 150 | 59 | 4 | 1 | 149 | 44 | 188 | 4.06e-37 | 140 |
| Msa0363100 | AT2G25540.1 | 54.701 | 117 | 49 | 2 | 1 | 116 | 38 | 151 | 1.55e-33 | 129 |
| Msa0363100 | AT3G17609.2 | 53.782 | 119 | 52 | 1 | 152 | 267 | 23 | 141 | 1.74e-33 | 120 |
| Msa0363100 | AT3G17609.3 | 53.153 | 111 | 49 | 1 | 160 | 267 | 2 | 112 | 1.08e-30 | 111 |
| Msa0363100 | AT3G17609.4 | 63.750 | 80 | 29 | 0 | 188 | 267 | 47 | 126 | 8.30e-29 | 107 |
| Msa0363100 | AT3G17609.1 | 63.750 | 80 | 29 | 0 | 188 | 267 | 48 | 127 | 8.36e-29 | 107 |
| Msa0363100 | AT5G05170.1 | 37.423 | 163 | 82 | 6 | 1 | 146 | 25 | 184 | 1.52e-20 | 92.0 |
| Msa0363100 | AT5G09870.1 | 38.776 | 147 | 81 | 5 | 1 | 146 | 44 | 182 | 4.36e-17 | 81.6 |
| Msa0363100 | AT5G17420.1 | 57.407 | 54 | 23 | 0 | 1 | 54 | 42 | 95 | 1.06e-16 | 80.5 |
| Msa0363100 | AT5G64740.1 | 61.111 | 54 | 21 | 0 | 1 | 54 | 44 | 97 | 1.99e-16 | 79.7 |
| Msa0363100 | AT4G39350.1 | 57.407 | 54 | 23 | 0 | 1 | 54 | 44 | 97 | 5.64e-16 | 78.6 |
| Msa0363100 | AT5G44030.2 | 43.421 | 76 | 41 | 1 | 1 | 74 | 28 | 103 | 2.30e-15 | 76.6 |
| Msa0363100 | AT5G44030.1 | 43.421 | 76 | 41 | 1 | 1 | 74 | 28 | 103 | 3.34e-15 | 76.3 |
| Msa0363100 | AT2G21770.1 | 55.556 | 54 | 24 | 0 | 1 | 54 | 44 | 97 | 1.02e-14 | 74.7 |
Find 92 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTCAAATTTAGGTAGTA+TGG | 0.223722 | 3_1:-55239180 | Msa0363100:three_prime_UTR |
| AAGATGATGTCGACGATTTA+AGG | 0.228388 | 3_1:-55242082 | Msa0363100:CDS |
| AACTTTCTCCATTCAAATTT+AGG | 0.256523 | 3_1:-55239188 | Msa0363100:three_prime_UTR |
| TGCTGGTCCAGAACGTGTTC+AGG | 0.289263 | 3_1:-55240499 | Msa0363100:CDS |
| TAGCCGTTTGCTTTCTTTGT+CGG | 0.302350 | 3_1:+55240437 | None:intergenic |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3_1:+55241294 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3_1:+55239523 | None:intergenic |
| GCTGACCTCTCTTCATCTTC+TGG | 0.318002 | 3_1:-55241999 | Msa0363100:CDS |
| GCAAGCAAGGGAGAGGAAAA+AGG | 0.332419 | 3_1:-55240264 | Msa0363100:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3_1:+55240558 | None:intergenic |
| ATTCTTTCTAGGTGTGCATT+TGG | 0.342651 | 3_1:-55239426 | Msa0363100:three_prime_UTR |
| CCAGCACCCTGAACACGTTC+TGG | 0.345136 | 3_1:+55240492 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3_1:-55241355 | Msa0363100:CDS |
| TTTACGAGAGGCTGATGTTC+CGG | 0.366238 | 3_1:+55240536 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3_1:-55240571 | Msa0363100:CDS |
| CGTTTGCTTTCTTTGTCGGC+TGG | 0.382290 | 3_1:+55240441 | None:intergenic |
| ATAGATAGTGGTTCATGAAT+AGG | 0.397809 | 3_1:-55239043 | Msa0363100:three_prime_UTR |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3_1:+55242241 | None:intergenic |
| CCAGAACGTGTTCAGGGTGC+TGG | 0.423989 | 3_1:-55240492 | Msa0363100:CDS |
| TTAAGGAATGAGGTCAAGTA+TGG | 0.424236 | 3_1:-55242065 | Msa0363100:CDS |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3_1:-55241354 | Msa0363100:CDS |
| GATTGATTGTCTTAACCTCT+AGG | 0.439797 | 3_1:-55239076 | Msa0363100:three_prime_UTR |
| CCATCTCACAAATGGACAAC+TGG | 0.446482 | 3_1:-55241952 | Msa0363100:intron |
| CAAAATCCCCATCTCACAAA+TGG | 0.448984 | 3_1:-55241960 | Msa0363100:CDS |
| CAGTTGTCCATTTGTGAGAT+GGG | 0.452668 | 3_1:+55241953 | None:intergenic |
| GCTCTGAATTCTTCTTCTCT+AGG | 0.454026 | 3_1:+55240207 | None:intergenic |
| CCAGTTGTCCATTTGTGAGA+TGG | 0.468711 | 3_1:+55241952 | None:intergenic |
| GTTTGCTTTCTTTGTCGGCT+GGG | 0.469429 | 3_1:+55240442 | None:intergenic |
| TAGTGATAATCAAAACTTAG+AGG | 0.472931 | 3_1:-55239503 | Msa0363100:three_prime_UTR |
| GTGAAGCACTGACATGAAAA+CGG | 0.473292 | 3_1:-55239345 | Msa0363100:three_prime_UTR |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3_1:-55241363 | Msa0363100:CDS |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3_1:-55240570 | Msa0363100:CDS |
| CCATACTACCTAAATTTGAA+TGG | 0.483920 | 3_1:+55239180 | None:intergenic |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.496174 | 3_1:-55240277 | Msa0363100:CDS |
| AAAGGCACTGGTTCAACTGC+TGG | 0.500784 | 3_1:-55240516 | Msa0363100:CDS |
| GGTATACTATATATAGATAG+TGG | 0.503098 | 3_1:-55239055 | Msa0363100:three_prime_UTR |
| TGCTAAGGCAGGATGGCAAT+GGG | 0.509509 | 3_1:-55242030 | Msa0363100:CDS |
| TGAAAATCAAATGCTGAGAC+AGG | 0.509539 | 3_1:-55240156 | Msa0363100:intron |
| TGAAGCACTGACATGAAAAC+GGG | 0.511180 | 3_1:-55239344 | Msa0363100:three_prime_UTR |
| ATATGATATACCTTCACAAA+TGG | 0.512349 | 3_1:+55239111 | None:intergenic |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3_1:-55242275 | Msa0363100:CDS |
| CAGCCGACAAAGAAAGCAAA+CGG | 0.518077 | 3_1:-55240440 | Msa0363100:CDS |
| AAGAAAGCAAACGGCTAAAG+AGG | 0.525143 | 3_1:-55240431 | Msa0363100:intron |
| ATGCTAAGGCAGGATGGCAA+TGG | 0.525935 | 3_1:-55242031 | Msa0363100:CDS |
| CAGCTCAGCAAGCAAGGGAG+AGG | 0.533112 | 3_1:-55240271 | Msa0363100:CDS |
| GCTGGTCCAGAACGTGTTCA+GGG | 0.533529 | 3_1:-55240498 | Msa0363100:CDS |
| CGTGTTCAGGGTGCTGGAGA+GGG | 0.536653 | 3_1:-55240486 | Msa0363100:CDS |
| TCAGATGATCCTCGAGTGAA+AGG | 0.541668 | 3_1:-55242116 | Msa0363100:intron |
| CAAGGAAATAATGCTAAGGC+AGG | 0.555264 | 3_1:-55242041 | Msa0363100:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3_1:+55241305 | None:intergenic |
| ATGGAAGTTACCATTTGTGA+AGG | 0.562440 | 3_1:-55239121 | Msa0363100:three_prime_UTR |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3_1:-55240246 | Msa0363100:CDS |
| GATAGTGGTTCATGAATAGG+TGG | 0.565840 | 3_1:-55239040 | Msa0363100:three_prime_UTR |
| AACACTACAGCTAGCAGGAG+AGG | 0.568592 | 3_1:-55239560 | Msa0363100:CDS |
| ACGTGTTCAGGGTGCTGGAG+AGG | 0.570680 | 3_1:-55240487 | Msa0363100:CDS |
| TCAGCCTCTCGTAAAGGCAC+TGG | 0.570711 | 3_1:-55240528 | Msa0363100:CDS |
| GGAACATCAGCCTCTCGTAA+AGG | 0.572244 | 3_1:-55240534 | Msa0363100:CDS |
| TGAAGAACACTACAGCTAGC+AGG | 0.574364 | 3_1:-55239565 | Msa0363100:CDS |
| GAAATAATGCTAAGGCAGGA+TGG | 0.579382 | 3_1:-55242037 | Msa0363100:CDS |
| GTATGGAGGTGAGTTACTAT+CGG | 0.580071 | 3_1:-55239163 | Msa0363100:three_prime_UTR |
| AGTGATAATCAAAACTTAGA+GGG | 0.583680 | 3_1:-55239502 | Msa0363100:three_prime_UTR |
| TCATCACCTCCTTTCACTCG+AGG | 0.584150 | 3_1:+55242107 | None:intergenic |
| GTGCATTTGGAATTTCATGA+AGG | 0.584245 | 3_1:-55239413 | Msa0363100:three_prime_UTR |
| AGTTGTCCATTTGTGAGATG+GGG | 0.584444 | 3_1:+55241954 | None:intergenic |
| AATGAGGTCAAGTATGGTCA+AGG | 0.586685 | 3_1:-55242059 | Msa0363100:CDS |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3_1:-55242342 | Msa0363100:CDS |
| AGTTTCAGCTCAGCAAGCAA+GGG | 0.598096 | 3_1:-55240276 | Msa0363100:CDS |
| TGGTCAAGGAAATAATGCTA+AGG | 0.601648 | 3_1:-55242045 | Msa0363100:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3_1:+55242231 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3_1:+55242286 | None:intergenic |
| TGTCGACGATTTAAGGAATG+AGG | 0.608917 | 3_1:-55242075 | Msa0363100:CDS |
| TTCAAATTTAGGTAGTATGG+AGG | 0.610153 | 3_1:-55239177 | Msa0363100:three_prime_UTR |
| AGCAGGAGAGGAAGCAACGG+TGG | 0.611550 | 3_1:-55239548 | Msa0363100:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3_1:+55242323 | None:intergenic |
| GCTAGCAGGAGAGGAAGCAA+CGG | 0.617888 | 3_1:-55239551 | Msa0363100:CDS |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3_1:-55241303 | Msa0363100:intron |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3_1:+55242326 | None:intergenic |
| TGAACCAGTGCCTTTACGAG+AGG | 0.628738 | 3_1:+55240524 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3_1:+55242285 | None:intergenic |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3_1:-55242219 | Msa0363100:intron |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3_1:-55240555 | Msa0363100:CDS |
| GGAGAGGGTCAAAAGAAGAG+AGG | 0.648990 | 3_1:-55240471 | Msa0363100:CDS |
| CATGTCCAGAAGATGAAGAG+AGG | 0.650710 | 3_1:+55241994 | None:intergenic |
| AAAATGGTAATAGGCTACTG+AGG | 0.652705 | 3_1:-55240304 | Msa0363100:intron |
| GATGATCCTCGAGTGAAAGG+AGG | 0.657821 | 3_1:-55242113 | Msa0363100:CDS |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3_1:+55242290 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3_1:+55241384 | None:intergenic |
| ATAGTGGTTCATGAATAGGT+GGG | 0.680599 | 3_1:-55239039 | Msa0363100:three_prime_UTR |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3_1:-55240567 | Msa0363100:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3_1:+55242301 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3_1:-55240595 | Msa0363100:intron |
| TCTATATATAGTATACCTAG+AGG | 0.728667 | 3_1:+55239061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACTTATATATTCACAAT+TGG | - | chr3_1:55239518-55239537 | Msa0363100:exon | 15.0% |
| !!! | TCATTTGAACTTTTTAAAAT+CGG | - | chr3_1:55239691-55239710 | Msa0363100:intron | 15.0% |
| !! | GTTTAAGAAAGTAAAATTTA+TGG | - | chr3_1:55239758-55239777 | Msa0363100:intron | 15.0% |
| !! | ATCATATGTGAAATAATATT+TGG | - | chr3_1:55239911-55239930 | Msa0363100:intron | 15.0% |
| !!! | ATACTAACTGTATATTTTTA+TGG | - | chr3_1:55239953-55239972 | Msa0363100:intron | 15.0% |
| !! | CTTAATTTAGAAAATGAAAA+AGG | + | chr3_1:55240324-55240343 | None:intergenic | 15.0% |
| !!! | TCTAAAATATTGTTTTAGAA+AGG | - | chr3_1:55241454-55241473 | Msa0363100:intron | 15.0% |
| !!! | TTTTTGTAATAATTTCGTTA+TGG | - | chr3_1:55242239-55242258 | Msa0363100:CDS | 15.0% |
| !! | AAAGTTTATGCATATTGAAA+AGG | + | chr3_1:55240205-55240224 | None:intergenic | 20.0% |
| !! | ATAGAAGTAAAAGTCTTTAT+AGG | - | chr3_1:55240259-55240278 | Msa0363100:CDS | 20.0% |
| !! | ATACATTAAAGGAATTCTAT+CGG | + | chr3_1:55240516-55240535 | None:intergenic | 20.0% |
| !! | CATCACATGAATAAATAAAA+TGG | - | chr3_1:55240702-55240721 | Msa0363100:intron | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | - | chr3_1:55240715-55240734 | Msa0363100:intron | 20.0% |
| !! | AATACTAACAATATTGACAT+AGG | + | chr3_1:55241637-55241656 | None:intergenic | 20.0% |
| !! | TTCATTTAATGGTATATGAT+TGG | - | chr3_1:55241777-55241796 | Msa0363100:intron | 20.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | + | chr3_1:55239096-55239115 | None:intergenic | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | + | chr3_1:55239097-55239116 | None:intergenic | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | - | chr3_1:55239104-55239123 | Msa0363100:three_prime_UTR | 25.0% |
| !! | AATTTTCAGACTCTTGAATT+TGG | - | chr3_1:55239465-55239484 | Msa0363100:three_prime_UTR | 25.0% |
| !! | ATAAGTTAACACATTTTTGC+AGG | + | chr3_1:55239507-55239526 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | + | chr3_1:55239569-55239588 | None:intergenic | 25.0% |
| !!! | TATTTTTATGGTTAGATGTC+TGG | - | chr3_1:55239965-55239984 | Msa0363100:intron | 25.0% |
| !!! | TTCTATTGTGAGTATTTTGA+AGG | + | chr3_1:55240245-55240264 | None:intergenic | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | - | chr3_1:55240632-55240651 | Msa0363100:intron | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+TGG | + | chr3_1:55240673-55240692 | None:intergenic | 25.0% |
| ! | ATGAATCAATCATAGGAAAA+AGG | + | chr3_1:55241016-55241035 | None:intergenic | 25.0% |
| ! | AAATGCTATGAATCAATCAT+AGG | + | chr3_1:55241023-55241042 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTTGTTACATTG+TGG | - | chr3_1:55241046-55241065 | Msa0363100:intron | 25.0% |
| ! | GGTATTATTGTTCTTTAGAT+AGG | - | chr3_1:55241350-55241369 | Msa0363100:CDS | 25.0% |
| !!! | AAATGACACTCATTTTGAAA+TGG | + | chr3_1:55241492-55241511 | None:intergenic | 25.0% |
| !!! | TTTCAAAATGAGTGTCATTT+AGG | - | chr3_1:55241492-55241511 | Msa0363100:intron | 25.0% |
| !!! | TTCAAAATGAGTGTCATTTA+GGG | - | chr3_1:55241493-55241512 | Msa0363100:intron | 25.0% |
| ! | ATACACACCAATAATTGATA+GGG | + | chr3_1:55241581-55241600 | None:intergenic | 25.0% |
| ! | TGTTAGTATTATGTTTAGAG+TGG | - | chr3_1:55241647-55241666 | Msa0363100:intron | 25.0% |
| !! | GTTAGTATTATGTTTAGAGT+GGG | - | chr3_1:55241648-55241667 | Msa0363100:intron | 25.0% |
| !! | TTAGTATTATGTTTAGAGTG+GGG | - | chr3_1:55241649-55241668 | Msa0363100:intron | 25.0% |
| !!! | AATTTTTGGGGATAAAATGA+TGG | + | chr3_1:55241723-55241742 | None:intergenic | 25.0% |
| ! | TGAACTAGAATATGCAAATT+TGG | + | chr3_1:55241761-55241780 | None:intergenic | 25.0% |
| !!! | GCATATTCTAGTTCATTTAA+TGG | - | chr3_1:55241766-55241785 | Msa0363100:intron | 25.0% |
| ! | TAGTGATAATCAAAACTTAG+AGG | - | chr3_1:55241876-55241895 | Msa0363100:intron | 25.0% |
| ! | AGTGATAATCAAAACTTAGA+GGG | - | chr3_1:55241877-55241896 | Msa0363100:intron | 25.0% |
| !!! | TAGTTTTGATGATTCTTTCT+AGG | - | chr3_1:55241942-55241961 | Msa0363100:intron | 25.0% |
| !! | ATATCAAAACACGATGTTTT+AGG | + | chr3_1:55242014-55242033 | None:intergenic | 25.0% |
| ! | AACTTTCTCCATTCAAATTT+AGG | - | chr3_1:55242191-55242210 | Msa0363100:intron | 25.0% |
| ! | ATATGATATACCTTCACAAA+TGG | + | chr3_1:55242271-55242290 | None:intergenic | 25.0% |
| ! | TCTATATATAGTATACCTAG+AGG | + | chr3_1:55242321-55242340 | None:intergenic | 25.0% |
| ! | GGTATACTATATATAGATAG+TGG | - | chr3_1:55242324-55242343 | Msa0363100:CDS | 25.0% |
| ACTAGATTCAAAAGTCACAA+AGG | - | chr3_1:55239160-55239179 | Msa0363100:three_prime_UTR | 30.0% | |
| ! | ATTTTGAGCTAAGATGTAGA+AGG | - | chr3_1:55239827-55239846 | Msa0363100:intron | 30.0% |
| ! | TTTTGAGCTAAGATGTAGAA+GGG | - | chr3_1:55239828-55239847 | Msa0363100:intron | 30.0% |
| GACACAGAAAAACAAAATTG+TGG | + | chr3_1:55240287-55240306 | None:intergenic | 30.0% | |
| ! | TCTAAATTAAGAGCCAGTTT+TGG | - | chr3_1:55240333-55240352 | Msa0363100:intron | 30.0% |
| GTTCAAAAGTTTACCAAAAC+TGG | + | chr3_1:55240349-55240368 | None:intergenic | 30.0% | |
| ! | ACTTTTGAACAAACACTTGT+AGG | - | chr3_1:55240359-55240378 | Msa0363100:intron | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | - | chr3_1:55240733-55240752 | Msa0363100:intron | 30.0% |
| TTGGCCTAGATAATTTACTT+GGG | - | chr3_1:55240734-55240753 | Msa0363100:intron | 30.0% | |
| CAAACCCAAGTAAATTATCT+AGG | + | chr3_1:55240741-55240760 | None:intergenic | 30.0% | |
| AGAACAATAATACCATGACA+GGG | + | chr3_1:55241344-55241363 | None:intergenic | 30.0% | |
| AAGAACAATAATACCATGAC+AGG | + | chr3_1:55241345-55241364 | None:intergenic | 30.0% | |
| AAACCAACCCTATCAATTAT+TGG | - | chr3_1:55241571-55241590 | Msa0363100:intron | 30.0% | |
| GATACACACCAATAATTGAT+AGG | + | chr3_1:55241582-55241601 | None:intergenic | 30.0% | |
| ! | ATTCACAGGGAGAAATTTTT+GGG | + | chr3_1:55241736-55241755 | None:intergenic | 30.0% |
| ! | AATTCACAGGGAGAAATTTT+TGG | + | chr3_1:55241737-55241756 | None:intergenic | 30.0% |
| CTAATTTCATTCAGCATTGT+TGG | + | chr3_1:55241859-55241878 | None:intergenic | 30.0% | |
| CCATACTACCTAAATTTGAA+TGG | + | chr3_1:55242202-55242221 | None:intergenic | 30.0% | |
| CCATTCAAATTTAGGTAGTA+TGG | - | chr3_1:55242199-55242218 | Msa0363100:intron | 30.0% | |
| TTCAAATTTAGGTAGTATGG+AGG | - | chr3_1:55242202-55242221 | Msa0363100:intron | 30.0% | |
| ! | ATAGATAGTGGTTCATGAAT+AGG | - | chr3_1:55242336-55242355 | Msa0363100:CDS | 30.0% |
| ACAAGAATAACAAAGTGGGA+AGG | + | chr3_1:55239092-55239111 | None:intergenic | 35.0% | |
| !! | TTGAATCTAGTCTTGCATTG+TGG | + | chr3_1:55239151-55239170 | None:intergenic | 35.0% |
| ATCCACATTCATCTTGTTCA+TGG | + | chr3_1:55239242-55239261 | None:intergenic | 35.0% | |
| AAGATGATGTCGACGATTTA+AGG | - | chr3_1:55239297-55239316 | Msa0363100:three_prime_UTR | 35.0% | |
| TTAAGGAATGAGGTCAAGTA+TGG | - | chr3_1:55239314-55239333 | Msa0363100:three_prime_UTR | 35.0% | |
| TGGTCAAGGAAATAATGCTA+AGG | - | chr3_1:55239334-55239353 | Msa0363100:three_prime_UTR | 35.0% | |
| TGCTACACTACAATCATTTC+AGG | + | chr3_1:55240113-55240132 | None:intergenic | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | - | chr3_1:55240125-55240144 | Msa0363100:intron | 35.0% | |
| !! | GTATTTTGAAGGAACTGGAA+AGG | + | chr3_1:55240234-55240253 | None:intergenic | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | + | chr3_1:55240239-55240258 | None:intergenic | 35.0% |
| CAACAGGAGTGATACATTAA+AGG | + | chr3_1:55240527-55240546 | None:intergenic | 35.0% | |
| ! | CTGAAGTGTTAGTATCACAT+GGG | + | chr3_1:55240561-55240580 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | + | chr3_1:55240562-55240581 | None:intergenic | 35.0% |
| CACCGGTAATAATGAGAAAA+TGG | + | chr3_1:55240637-55240656 | None:intergenic | 35.0% | |
| GTTTGAACTCTTAGTGACTT+TGG | - | chr3_1:55240756-55240775 | Msa0363100:intron | 35.0% | |
| !! | TAGTGACTTTGGAATAATCC+AGG | - | chr3_1:55240767-55240786 | Msa0363100:intron | 35.0% |
| CAATCATAGGAAAAAGGAGT+TGG | + | chr3_1:55241010-55241029 | None:intergenic | 35.0% | |
| TACATTGTGGCGTGTAAAAA+TGG | - | chr3_1:55241059-55241078 | Msa0363100:intron | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | - | chr3_1:55241066-55241085 | Msa0363100:intron | 35.0% | |
| AAAATGGTAATAGGCTACTG+AGG | - | chr3_1:55241075-55241094 | Msa0363100:intron | 35.0% | |
| TGAAAATCAAATGCTGAGAC+AGG | - | chr3_1:55241223-55241242 | Msa0363100:intron | 35.0% | |
| ! | CAAAGGCATGTTGATGTAAT+TGG | + | chr3_1:55241267-55241286 | None:intergenic | 35.0% |
| TTTAGATAGGTTACATGAGC+TGG | - | chr3_1:55241363-55241382 | Msa0363100:CDS | 35.0% | |
| !!! | GACACTCATTTTGAAATGGA+GGG | + | chr3_1:55241488-55241507 | None:intergenic | 35.0% |
| !!! | TGACACTCATTTTGAAATGG+AGG | + | chr3_1:55241489-55241508 | None:intergenic | 35.0% |
| ACACCAATAATTGATAGGGT+TGG | + | chr3_1:55241577-55241596 | None:intergenic | 35.0% | |
| !! | AAAATGATGGTTTGGTGGAA+GGG | + | chr3_1:55241710-55241729 | None:intergenic | 35.0% |
| !! | TAAAATGATGGTTTGGTGGA+AGG | + | chr3_1:55241711-55241730 | None:intergenic | 35.0% |
| TTGGGGATAAAATGATGGTT+TGG | + | chr3_1:55241718-55241737 | None:intergenic | 35.0% | |
| ! | TTCACAGGGAGAAATTTTTG+GGG | + | chr3_1:55241735-55241754 | None:intergenic | 35.0% |
| TGCAAATTTGGCAATTCACA+GGG | + | chr3_1:55241749-55241768 | None:intergenic | 35.0% | |
| ATGCAAATTTGGCAATTCAC+AGG | + | chr3_1:55241750-55241769 | None:intergenic | 35.0% | |
| ATTCTTTCTAGGTGTGCATT+TGG | - | chr3_1:55241953-55241972 | Msa0363100:CDS | 35.0% | |
| ! | GTGCATTTGGAATTTCATGA+AGG | - | chr3_1:55241966-55241985 | Msa0363100:CDS | 35.0% |
| ATGGAAGTTACCATTTGTGA+AGG | - | chr3_1:55242258-55242277 | Msa0363100:CDS | 35.0% | |
| GATTGATTGTCTTAACCTCT+AGG | - | chr3_1:55242303-55242322 | Msa0363100:CDS | 35.0% | |
| ATAGTGGTTCATGAATAGGT+GGG | - | chr3_1:55242340-55242359 | Msa0363100:CDS | 35.0% | |
| TCTTGCATTGTGGACATGAT+TGG | + | chr3_1:55239141-55239160 | None:intergenic | 40.0% | |
| !! | AAGGTTAGCTTGTGATCACA+TGG | - | chr3_1:55239179-55239198 | Msa0363100:three_prime_UTR | 40.0% |
| TCATGGCAAATTCTGATGAG+AGG | + | chr3_1:55239225-55239244 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | - | chr3_1:55239237-55239256 | Msa0363100:three_prime_UTR | 40.0% | |
| TGTCGACGATTTAAGGAATG+AGG | - | chr3_1:55239304-55239323 | Msa0363100:three_prime_UTR | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | - | chr3_1:55239320-55239339 | Msa0363100:three_prime_UTR | 40.0% | |
| CAAGGAAATAATGCTAAGGC+AGG | - | chr3_1:55239338-55239357 | Msa0363100:three_prime_UTR | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | - | chr3_1:55239342-55239361 | Msa0363100:three_prime_UTR | 40.0% | |
| CAAAATCCCCATCTCACAAA+TGG | - | chr3_1:55239419-55239438 | Msa0363100:three_prime_UTR | 40.0% | |
| AGTTGTCCATTTGTGAGATG+GGG | + | chr3_1:55239428-55239447 | None:intergenic | 40.0% | |
| CAGTTGTCCATTTGTGAGAT+GGG | + | chr3_1:55239429-55239448 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | + | chr3_1:55239998-55240017 | None:intergenic | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | - | chr3_1:55240016-55240035 | Msa0363100:intron | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | - | chr3_1:55240025-55240044 | Msa0363100:intron | 40.0% | |
| ! | ACATTTTCGGATTGACCCAA+AGG | + | chr3_1:55240043-55240062 | None:intergenic | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | + | chr3_1:55240077-55240096 | None:intergenic | 40.0% |
| TATGTTGATCCAAAGCAACC+AGG | - | chr3_1:55240076-55240095 | Msa0363100:intron | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | + | chr3_1:55240491-55240510 | None:intergenic | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | + | chr3_1:55240508-55240527 | None:intergenic | 40.0% | |
| ! | CTTCAGATTGAAAGCATGTC+CGG | - | chr3_1:55240575-55240594 | Msa0363100:CDS | 40.0% |
| ATTATTACCGGTGTCCTGTT+AGG | - | chr3_1:55240644-55240663 | Msa0363100:intron | 40.0% | |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | - | chr3_1:55240809-55240828 | Msa0363100:intron | 40.0% |
| TAGCCGTTTGCTTTCTTTGT+CGG | + | chr3_1:55240945-55240964 | None:intergenic | 40.0% | |
| AAGAAAGCAAACGGCTAAAG+AGG | - | chr3_1:55240948-55240967 | Msa0363100:intron | 40.0% | |
| GAAAAAGGAGTTGGAGTTCA+TGG | + | chr3_1:55241001-55241020 | None:intergenic | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | - | chr3_1:55241133-55241152 | Msa0363100:intron | 40.0% |
| ! | GCTCTGAATTCTTCTTCTCT+AGG | + | chr3_1:55241175-55241194 | None:intergenic | 40.0% |
| ! | ACACAATGATGACGAGACAA+AGG | + | chr3_1:55241284-55241303 | None:intergenic | 40.0% |
| !! | AAATGATGGTTTGGTGGAAG+GGG | + | chr3_1:55241709-55241728 | None:intergenic | 40.0% |
| ! | GGGATAAAATGATGGTTTGG+TGG | + | chr3_1:55241715-55241734 | None:intergenic | 40.0% |
| !! | GTGAAGCACTGACATGAAAA+CGG | - | chr3_1:55242034-55242053 | Msa0363100:CDS | 40.0% |
| !! | TGAAGCACTGACATGAAAAC+GGG | - | chr3_1:55242035-55242054 | Msa0363100:CDS | 40.0% |
| GTATGGAGGTGAGTTACTAT+CGG | - | chr3_1:55242216-55242235 | Msa0363100:intron | 40.0% | |
| ! | GATAGTGGTTCATGAATAGG+TGG | - | chr3_1:55242339-55242358 | Msa0363100:CDS | 40.0% |
| ACTGTTGGATTAACAGCCAC+CGG | - | chr3_1:55239037-55239056 | Msa0363100:three_prime_UTR | 45.0% | |
| TCAGATGATCCTCGAGTGAA+AGG | - | chr3_1:55239263-55239282 | Msa0363100:three_prime_UTR | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | + | chr3_1:55239388-55239407 | None:intergenic | 45.0% | |
| CCAGTTGTCCATTTGTGAGA+TGG | + | chr3_1:55239430-55239449 | None:intergenic | 45.0% | |
| CCATCTCACAAATGGACAAC+TGG | - | chr3_1:55239427-55239446 | Msa0363100:three_prime_UTR | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | - | chr3_1:55240024-55240043 | Msa0363100:intron | 45.0% | |
| ! | GGCACGTGAGTGAACATTTT+CGG | + | chr3_1:55240056-55240075 | None:intergenic | 45.0% |
| AACTCTGTACCTGGTTGCTT+TGG | + | chr3_1:55240088-55240107 | None:intergenic | 45.0% | |
| TTTCAGGCTAACTCTGTACC+TGG | + | chr3_1:55240097-55240116 | None:intergenic | 45.0% | |
| !! | GCGAGTTTCTGAAATAGTCG+AGG | + | chr3_1:55240455-55240474 | None:intergenic | 45.0% |
| CTATCGGTCAAGAGGATTAC+TGG | + | chr3_1:55240500-55240519 | None:intergenic | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | + | chr3_1:55240543-55240562 | None:intergenic | 45.0% | |
| CATTGACATGGACACCTAAC+AGG | + | chr3_1:55240661-55240680 | None:intergenic | 45.0% | |
| !! | GATCAGAAGAGTGCCAGATA+TGG | - | chr3_1:55240808-55240827 | Msa0363100:intron | 45.0% |
| TTTACGAGAGGCTGATGTTC+CGG | + | chr3_1:55240846-55240865 | None:intergenic | 45.0% | |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | + | chr3_1:55240940-55240959 | None:intergenic | 45.0% |
| CAGCCGACAAAGAAAGCAAA+CGG | - | chr3_1:55240939-55240958 | Msa0363100:intron | 45.0% | |
| AGTTTCAGCTCAGCAAGCAA+GGG | - | chr3_1:55241103-55241122 | Msa0363100:intron | 45.0% | |
| ! | TCTGTAAAGCATCCCTGTCA+TGG | - | chr3_1:55241329-55241348 | Msa0363100:CDS | 45.0% |
| GGTGGAAGAGTAAAGTAAGG+AGG | + | chr3_1:55241688-55241707 | None:intergenic | 45.0% | |
| AGGGGTGGAAGAGTAAAGTA+AGG | + | chr3_1:55241691-55241710 | None:intergenic | 45.0% | |
| TGAAGAACACTACAGCTAGC+AGG | - | chr3_1:55241814-55241833 | Msa0363100:intron | 45.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | + | chr3_1:55239059-55239078 | None:intergenic | 50.0% | |
| AAAGTGGGAAGGAACACTCG+TGG | + | chr3_1:55239081-55239100 | None:intergenic | 50.0% | |
| GATGATCCTCGAGTGAAAGG+AGG | - | chr3_1:55239266-55239285 | Msa0363100:three_prime_UTR | 50.0% | |
| TCATCACCTCCTTTCACTCG+AGG | + | chr3_1:55239275-55239294 | None:intergenic | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | - | chr3_1:55239348-55239367 | Msa0363100:three_prime_UTR | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | - | chr3_1:55239349-55239368 | Msa0363100:three_prime_UTR | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | - | chr3_1:55239380-55239399 | Msa0363100:three_prime_UTR | 50.0% | |
| ! | CACGTGTCATTGTCAGACAC+CGG | + | chr3_1:55240597-55240616 | None:intergenic | 50.0% |
| ATGGACACCTAACAGGACAC+CGG | + | chr3_1:55240654-55240673 | None:intergenic | 50.0% | |
| !! | AGAAGAGTGCCAGATATGGG+AGG | - | chr3_1:55240812-55240831 | Msa0363100:intron | 50.0% |
| GCAGATTCACCTCCCATATC+TGG | + | chr3_1:55240824-55240843 | None:intergenic | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | - | chr3_1:55240824-55240843 | Msa0363100:intron | 50.0% | |
| GGAACATCAGCCTCTCGTAA+AGG | - | chr3_1:55240845-55240864 | Msa0363100:intron | 50.0% | |
| TGAACCAGTGCCTTTACGAG+AGG | + | chr3_1:55240858-55240877 | None:intergenic | 50.0% | |
| !! | AAAGGCACTGGTTCAACTGC+TGG | - | chr3_1:55240863-55240882 | Msa0363100:intron | 50.0% |
| GGAGAGGGTCAAAAGAAGAG+AGG | - | chr3_1:55240908-55240927 | Msa0363100:intron | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | + | chr3_1:55240941-55240960 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | - | chr3_1:55241102-55241121 | Msa0363100:intron | 50.0% | |
| GCAAGCAAGGGAGAGGAAAA+AGG | - | chr3_1:55241115-55241134 | Msa0363100:intron | 50.0% | |
| AACACTACAGCTAGCAGGAG+AGG | - | chr3_1:55241819-55241838 | Msa0363100:intron | 50.0% | |
| AGCAACAAAGACTTCGCCGG+TGG | + | chr3_1:55239056-55239075 | None:intergenic | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | - | chr3_1:55240784-55240803 | Msa0363100:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | + | chr3_1:55240788-55240807 | None:intergenic | 55.0% | |
| ! | TCAGCCTCTCGTAAAGGCAC+TGG | - | chr3_1:55240851-55240870 | Msa0363100:intron | 55.0% |
| TGCTGGTCCAGAACGTGTTC+AGG | - | chr3_1:55240880-55240899 | Msa0363100:intron | 55.0% | |
| GCTGGTCCAGAACGTGTTCA+GGG | - | chr3_1:55240881-55240900 | Msa0363100:intron | 55.0% | |
| !! | TGATGGTTTGGTGGAAGGGG+TGG | + | chr3_1:55241706-55241725 | None:intergenic | 55.0% |
| GCTAGCAGGAGAGGAAGCAA+CGG | - | chr3_1:55241828-55241847 | Msa0363100:intron | 55.0% | |
| CCAGCACCCTGAACACGTTC+TGG | + | chr3_1:55240890-55240909 | None:intergenic | 60.0% | |
| CCAGAACGTGTTCAGGGTGC+TGG | - | chr3_1:55240887-55240906 | Msa0363100:intron | 60.0% | |
| !! | ACGTGTTCAGGGTGCTGGAG+AGG | - | chr3_1:55240892-55240911 | Msa0363100:intron | 60.0% |
| !! | CGTGTTCAGGGTGCTGGAGA+GGG | - | chr3_1:55240893-55240912 | Msa0363100:intron | 60.0% |
| CAGCTCAGCAAGCAAGGGAG+AGG | - | chr3_1:55241108-55241127 | Msa0363100:intron | 60.0% | |
| AGCAGGAGAGGAAGCAACGG+TGG | - | chr3_1:55241831-55241850 | Msa0363100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 55239034 | 55242367 | 55239034 | ID=Msa0363100;Name=Msa0363100 |
| chr3_1 | mRNA | 55239034 | 55242367 | 55239034 | ID=Msa0363100-mRNA-1;Parent=Msa0363100;Name=Msa0363100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.83|1|0.8|0.66|6|495|282 |
| chr3_1 | exon | 55239034 | 55239591 | 55239034 | ID=Msa0363100-mRNA-1:exon:10067;Parent=Msa0363100-mRNA-1 |
| chr3_1 | exon | 55240157 | 55240313 | 55240157 | ID=Msa0363100-mRNA-1:exon:10066;Parent=Msa0363100-mRNA-1 |
| chr3_1 | exon | 55240432 | 55240612 | 55240432 | ID=Msa0363100-mRNA-1:exon:10065;Parent=Msa0363100-mRNA-1 |
| chr3_1 | exon | 55241304 | 55241421 | 55241304 | ID=Msa0363100-mRNA-1:exon:10064;Parent=Msa0363100-mRNA-1 |
| chr3_1 | exon | 55241953 | 55242134 | 55241953 | ID=Msa0363100-mRNA-1:exon:10063;Parent=Msa0363100-mRNA-1 |
| chr3_1 | exon | 55242220 | 55242367 | 55242220 | ID=Msa0363100-mRNA-1:exon:10062;Parent=Msa0363100-mRNA-1 |
| chr3_1 | CDS | 55242220 | 55242367 | 55242220 | ID=Msa0363100-mRNA-1:cds;Parent=Msa0363100-mRNA-1 |
| chr3_1 | CDS | 55241953 | 55242134 | 55241953 | ID=Msa0363100-mRNA-1:cds;Parent=Msa0363100-mRNA-1 |
| chr3_1 | CDS | 55241304 | 55241421 | 55241304 | ID=Msa0363100-mRNA-1:cds;Parent=Msa0363100-mRNA-1 |
| chr3_1 | CDS | 55240432 | 55240612 | 55240432 | ID=Msa0363100-mRNA-1:cds;Parent=Msa0363100-mRNA-1 |
| chr3_1 | CDS | 55240157 | 55240313 | 55240157 | ID=Msa0363100-mRNA-1:cds;Parent=Msa0363100-mRNA-1 |
| chr3_1 | CDS | 55239529 | 55239591 | 55239529 | ID=Msa0363100-mRNA-1:cds;Parent=Msa0363100-mRNA-1 |
| chr3_1 | three_prime_UTR | 55239034 | 55239528 | 55239034 | ID=Msa0363100-mRNA-1:three_prime_utr;Parent=Msa0363100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
