Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239130 | XP_003594205.1 | 91.813 | 171 | 13 | 1 | 1 | 171 | 2 | 171 | 2.83e-113 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239130 | sp|O82081|UCC1_ARATH | 34.586 | 133 | 81 | 3 | 6 | 136 | 8 | 136 | 9.22e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239130 | Q2HT27 | 91.813 | 171 | 13 | 1 | 1 | 171 | 2 | 171 | 1.35e-113 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa0239130 | 0.802114 | 6.541444e-49 | -8.615850e-47 |
| Msa0014920 | Msa0239130 | 0.811652 | 6.289680e-51 | -8.615850e-47 |
| Msa0038350 | Msa0239130 | -0.805553 | 1.262946e-49 | -8.615850e-47 |
| Msa0052020 | Msa0239130 | 0.810985 | 8.779164e-51 | -8.615850e-47 |
| Msa0075850 | Msa0239130 | 0.807645 | 4.567542e-50 | -8.615850e-47 |
| Msa0105420 | Msa0239130 | 0.840597 | 7.902221e-58 | -8.615850e-47 |
| Msa0120330 | Msa0239130 | 0.803177 | 3.947532e-49 | -8.615850e-47 |
| Msa0165430 | Msa0239130 | 0.832689 | 8.190267e-56 | -8.615850e-47 |
| Msa0168390 | Msa0239130 | 0.805184 | 1.508592e-49 | -8.615850e-47 |
| Msa0185480 | Msa0239130 | 0.812793 | 3.545658e-51 | -8.615850e-47 |
| Msa0238890 | Msa0239130 | 0.825264 | 5.153042e-54 | -8.615850e-47 |
| Msa0239130 | Msa0289890 | 0.813060 | 3.098256e-51 | -8.615850e-47 |
| Msa0239130 | Msa0316850 | 0.832374 | 9.805987e-56 | -8.615850e-47 |
| Msa0239130 | Msa0342200 | 0.800705 | 1.271298e-48 | -8.615850e-47 |
| Msa0239130 | Msa0371540 | 0.801060 | 1.075850e-48 | -8.615850e-47 |
| Msa0239130 | Msa0418000 | 0.826860 | 2.151429e-54 | -8.615850e-47 |
| Msa0239130 | Msa0431710 | 0.810607 | 1.059807e-50 | -8.615850e-47 |
| Msa0239130 | Msa0466060 | 0.801948 | 7.077578e-49 | -8.615850e-47 |
| Msa0239130 | Msa0474110 | 0.817081 | 3.967074e-52 | -8.615850e-47 |
| Msa0239130 | Msa0514860 | 0.807802 | 4.231205e-50 | -8.615850e-47 |
| Msa0239130 | Msa0546380 | 0.822778 | 1.974325e-53 | -8.615850e-47 |
| Msa0239130 | Msa0621890 | 0.816656 | 4.940673e-52 | -8.615850e-47 |
| Msa0239130 | Msa0647000 | 0.804343 | 2.260918e-49 | -8.615850e-47 |
| Msa0239130 | Msa0690170 | 0.803641 | 3.163293e-49 | -8.615850e-47 |
| Msa0239130 | Msa0716450 | 0.823788 | 1.147093e-53 | -8.615850e-47 |
| Msa0239130 | Msa0725480 | -0.820288 | 7.424603e-53 | -8.615850e-47 |
| Msa0239130 | Msa0757950 | 0.813335 | 2.696300e-51 | -8.615850e-47 |
| Msa0239130 | Msa0766100 | -0.814275 | 1.673959e-51 | -8.615850e-47 |
| Msa0239130 | Msa0792510 | 0.835749 | 1.399711e-56 | -8.615850e-47 |
| Msa0239130 | Msa0799030 | 0.826986 | 2.007147e-54 | -8.615850e-47 |
| Msa0239130 | Msa0810480 | 0.826203 | 3.086303e-54 | -8.615850e-47 |
| Msa0239130 | Msa0820670 | 0.807933 | 3.967533e-50 | -8.615850e-47 |
| Msa0239130 | Msa0880080 | 0.828997 | 6.585500e-55 | -8.615850e-47 |
| Msa0239130 | Msa0894890 | 0.802438 | 5.611090e-49 | -8.615850e-47 |
| Msa0239130 | Msa0944770 | 0.817206 | 3.719103e-52 | -8.615850e-47 |
| Msa0239130 | Msa0977320 | 0.810648 | 1.038460e-50 | -8.615850e-47 |
| Msa0239130 | Msa0981010 | 0.819029 | 1.438892e-52 | -8.615850e-47 |
| Msa0239130 | Msa1002620 | 0.805867 | 1.085052e-49 | -8.615850e-47 |
| Msa0239130 | Msa1008490 | 0.822194 | 2.698178e-53 | -8.615850e-47 |
| Msa0239130 | Msa1009000 | 0.824650 | 7.195755e-54 | -8.615850e-47 |
| Msa0239130 | Msa1014270 | 0.834970 | 2.202848e-56 | -8.615850e-47 |
| Msa0239130 | Msa1019020 | 0.807068 | 6.055812e-50 | -8.615850e-47 |
| Msa0239130 | Msa1036390 | 0.823488 | 1.348297e-53 | -8.615850e-47 |
| Msa0239130 | Msa1055260 | 0.822405 | 2.410615e-53 | -8.615850e-47 |
| Msa0239130 | Msa1055280 | 0.833222 | 6.036221e-56 | -8.615850e-47 |
| Msa0239130 | Msa1076680 | 0.813685 | 2.258959e-51 | -8.615850e-47 |
| Msa0239130 | Msa1080870 | 0.804431 | 2.167867e-49 | -8.615850e-47 |
| Msa0239130 | Msa1081600 | 0.846772 | 1.760293e-59 | -8.615850e-47 |
| Msa0239130 | Msa1098560 | 0.824425 | 8.130122e-54 | -8.615850e-47 |
| Msa0239130 | Msa1099030 | 0.808067 | 3.716367e-50 | -8.615850e-47 |
| Msa0239130 | Msa1104000 | 0.825668 | 4.135510e-54 | -8.615850e-47 |
| Msa0239130 | Msa1119000 | 0.801159 | 1.026949e-48 | -8.615850e-47 |
| Msa0239130 | Msa1120540 | 0.809413 | 1.915778e-50 | -8.615850e-47 |
| Msa0239130 | Msa1125040 | 0.823442 | 1.382288e-53 | -8.615850e-47 |
| Msa0239130 | Msa1147570 | 0.809228 | 2.099063e-50 | -8.615850e-47 |
| Msa0239130 | Msa1151960 | 0.808751 | 2.655501e-50 | -8.615850e-47 |
| Msa0239130 | Msa1166370 | 0.838986 | 2.075205e-57 | -8.615850e-47 |
| Msa0239130 | Msa1167400 | 0.820603 | 6.285693e-53 | -8.615850e-47 |
| Msa0239130 | Msa1201990 | 0.809856 | 1.538896e-50 | -8.615850e-47 |
| Msa0239130 | Msa1220230 | 0.820511 | 6.598794e-53 | -8.615850e-47 |
| Msa0239130 | Msa1227950 | 0.826439 | 2.711795e-54 | -8.615850e-47 |
| Msa0239130 | Msa1227970 | 0.824997 | 5.959692e-54 | -8.615850e-47 |
| Msa0239130 | Msa1228210 | 0.814760 | 1.307119e-51 | -8.615850e-47 |
| Msa0239130 | Msa1254770 | 0.815200 | 1.044448e-51 | -8.615850e-47 |
| Msa0239130 | Msa1254800 | 0.815170 | 1.060416e-51 | -8.615850e-47 |
| Msa0239130 | Msa1269080 | 0.831220 | 1.888299e-55 | -8.615850e-47 |
| Msa0239130 | Msa1271300 | 0.830088 | 3.575438e-55 | -8.615850e-47 |
| Msa0239130 | Msa1318240 | 0.823730 | 1.183169e-53 | -8.615850e-47 |
| Msa0239130 | Msa1321000 | 0.813982 | 1.942411e-51 | -8.615850e-47 |
| Msa0239130 | Msa1323060 | 0.800166 | 1.637126e-48 | -8.615850e-47 |
| Msa0239130 | Msa1329990 | 0.813217 | 2.863005e-51 | -8.615850e-47 |
| Msa0239130 | Msa1335770 | 0.822343 | 2.492669e-53 | -8.615850e-47 |
| Msa0239130 | Msa1343820 | 0.800326 | 1.518802e-48 | -8.615850e-47 |
| Msa0239130 | Msa1363890 | 0.820878 | 5.435330e-53 | -8.615850e-47 |
| Msa0239130 | Msa1373950 | 0.829541 | 4.859985e-55 | -8.615850e-47 |
| Msa0239130 | Msa1380280 | 0.806559 | 7.754617e-50 | -8.615850e-47 |
| Msa0239130 | Msa1390310 | 0.802686 | 4.986791e-49 | -8.615850e-47 |
| Msa0239130 | Msa1414740 | 0.818749 | 1.666410e-52 | -8.615850e-47 |
| Msa0239130 | Msa1420500 | 0.800663 | 1.296879e-48 | -8.615850e-47 |
| Msa0239130 | Msa1423080 | 0.826446 | 2.700229e-54 | -8.615850e-47 |
| Msa0239130 | Msa1423450 | 0.822809 | 1.942141e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239130 | MtrunA17_Chr2g0289741 | 91.813 | 171 | 13 | 1 | 1 | 171 | 2 | 171 | 2.60e-117 | 329 |
| Msa0239130 | MtrunA17_Chr6g0459441 | 39.394 | 99 | 59 | 1 | 25 | 123 | 24 | 121 | 4.57e-23 | 90.1 |
| Msa0239130 | MtrunA17_Chr2g0323021 | 36.806 | 144 | 77 | 7 | 7 | 144 | 6 | 141 | 9.07e-23 | 90.5 |
| Msa0239130 | MtrunA17_Chr3g0132431 | 35.246 | 122 | 77 | 2 | 14 | 135 | 13 | 132 | 1.03e-19 | 81.6 |
| Msa0239130 | MtrunA17_Chr8g0360371 | 35.714 | 126 | 73 | 4 | 11 | 129 | 7 | 131 | 5.47e-19 | 82.0 |
| Msa0239130 | MtrunA17_Chr3g0132511 | 38.393 | 112 | 67 | 2 | 14 | 124 | 13 | 123 | 6.91e-19 | 80.1 |
| Msa0239130 | MtrunA17_Chr3g0132701 | 38.393 | 112 | 67 | 2 | 14 | 124 | 13 | 123 | 2.16e-18 | 79.0 |
| Msa0239130 | MtrunA17_Chr3g0132441 | 36.975 | 119 | 71 | 3 | 6 | 124 | 7 | 121 | 3.75e-18 | 77.4 |
| Msa0239130 | MtrunA17_Chr1g0196801 | 29.193 | 161 | 100 | 6 | 20 | 169 | 16 | 173 | 9.05e-18 | 76.3 |
| Msa0239130 | MtrunA17_Chr6g0481491 | 34.746 | 118 | 75 | 2 | 11 | 128 | 12 | 127 | 1.58e-17 | 76.3 |
| Msa0239130 | MtrunA17_Chr2g0324721 | 34.454 | 119 | 73 | 3 | 29 | 145 | 29 | 144 | 6.83e-16 | 72.0 |
| Msa0239130 | MtrunA17_Chr4g0040291 | 33.858 | 127 | 75 | 5 | 24 | 144 | 24 | 147 | 9.58e-16 | 71.2 |
| Msa0239130 | MtrunA17_Chr7g0253761 | 30.769 | 117 | 80 | 1 | 10 | 126 | 9 | 124 | 1.78e-15 | 70.1 |
| Msa0239130 | MtrunA17_Chr6g0453921 | 33.588 | 131 | 80 | 4 | 6 | 134 | 20 | 145 | 2.78e-15 | 69.7 |
| Msa0239130 | MtrunA17_Chr2g0331181 | 30.612 | 147 | 88 | 5 | 10 | 151 | 10 | 147 | 3.74e-15 | 69.7 |
| Msa0239130 | MtrunA17_Chr3g0132411 | 30.769 | 130 | 88 | 2 | 1 | 130 | 39 | 166 | 1.05e-14 | 68.2 |
| Msa0239130 | MtrunA17_Chr8g0385021 | 33.333 | 126 | 76 | 4 | 10 | 131 | 6 | 127 | 1.20e-14 | 69.7 |
| Msa0239130 | MtrunA17_Chr8g0335531 | 38.000 | 100 | 54 | 3 | 28 | 123 | 25 | 120 | 1.29e-14 | 68.2 |
| Msa0239130 | MtrunA17_Chr8g0335571 | 38.776 | 98 | 56 | 3 | 28 | 123 | 25 | 120 | 1.32e-14 | 68.6 |
| Msa0239130 | MtrunA17_Chr2g0324711 | 34.426 | 122 | 75 | 3 | 6 | 123 | 2 | 122 | 1.48e-14 | 70.1 |
| Msa0239130 | MtrunA17_Chr8g0387804 | 32.231 | 121 | 73 | 4 | 7 | 124 | 14 | 128 | 1.78e-14 | 66.6 |
| Msa0239130 | MtrunA17_Chr4g0041811 | 29.134 | 127 | 85 | 2 | 1 | 123 | 6 | 131 | 3.06e-14 | 67.8 |
| Msa0239130 | MtrunA17_Chr2g0319611 | 37.113 | 97 | 56 | 2 | 28 | 119 | 27 | 123 | 3.35e-14 | 68.2 |
| Msa0239130 | MtrunA17_Chr7g0253641 | 30.769 | 117 | 80 | 1 | 10 | 126 | 9 | 124 | 5.65e-14 | 67.4 |
| Msa0239130 | MtrunA17_Chr5g0440711 | 31.405 | 121 | 81 | 2 | 10 | 129 | 13 | 132 | 7.68e-14 | 65.1 |
| Msa0239130 | MtrunA17_Chr7g0253631 | 30.252 | 119 | 82 | 1 | 7 | 125 | 6 | 123 | 1.71e-13 | 66.2 |
| Msa0239130 | MtrunA17_Chr8g0385031 | 32.203 | 118 | 75 | 3 | 10 | 123 | 6 | 122 | 1.82e-13 | 66.6 |
| Msa0239130 | MtrunA17_Chr1g0150131 | 31.746 | 126 | 80 | 4 | 3 | 123 | 1 | 125 | 2.19e-13 | 64.7 |
| Msa0239130 | MtrunA17_Chr4g0064041 | 30.469 | 128 | 83 | 3 | 10 | 132 | 12 | 138 | 9.14e-13 | 65.1 |
| Msa0239130 | MtrunA17_Chr4g0064041 | 30.769 | 104 | 67 | 2 | 24 | 123 | 188 | 290 | 4.64e-11 | 60.1 |
| Msa0239130 | MtrunA17_Chr1g0205701 | 32.203 | 118 | 75 | 4 | 9 | 123 | 7 | 122 | 1.43e-12 | 62.8 |
| Msa0239130 | MtrunA17_Chr4g0001571 | 30.097 | 103 | 70 | 2 | 23 | 125 | 25 | 125 | 2.57e-11 | 58.9 |
| Msa0239130 | MtrunA17_Chr5g0440804 | 28.082 | 146 | 96 | 4 | 21 | 164 | 24 | 162 | 7.95e-11 | 57.8 |
| Msa0239130 | MtrunA17_Chr3g0136871 | 31.373 | 153 | 92 | 7 | 28 | 169 | 28 | 178 | 8.11e-11 | 57.8 |
| Msa0239130 | MtrunA17_Chr7g0253701 | 31.633 | 98 | 65 | 2 | 27 | 123 | 26 | 122 | 8.74e-11 | 57.4 |
| Msa0239130 | MtrunA17_Chr7g0253671 | 31.633 | 98 | 65 | 2 | 27 | 123 | 26 | 122 | 8.74e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239130 | AT3G27200.1 | 37.097 | 124 | 74 | 3 | 1 | 123 | 1 | 121 | 9.31e-22 | 87.0 |
| Msa0239130 | AT2G32300.1 | 34.586 | 133 | 81 | 3 | 6 | 136 | 8 | 136 | 9.37e-21 | 86.3 |
| Msa0239130 | AT2G32300.2 | 32.168 | 143 | 93 | 2 | 6 | 148 | 38 | 176 | 1.64e-20 | 86.3 |
| Msa0239130 | AT5G07475.1 | 35.156 | 128 | 72 | 4 | 6 | 130 | 15 | 134 | 5.00e-19 | 80.5 |
| Msa0239130 | AT2G26720.1 | 32.824 | 131 | 86 | 2 | 6 | 135 | 8 | 137 | 1.79e-17 | 76.6 |
| Msa0239130 | AT4G27520.1 | 32.800 | 125 | 80 | 3 | 1 | 123 | 6 | 128 | 1.37e-16 | 76.3 |
| Msa0239130 | AT2G25060.1 | 33.758 | 157 | 90 | 8 | 8 | 154 | 14 | 166 | 2.22e-16 | 73.2 |
| Msa0239130 | AT3G17675.1 | 31.667 | 120 | 80 | 2 | 6 | 125 | 12 | 129 | 6.37e-16 | 70.5 |
| Msa0239130 | AT4G31840.1 | 30.168 | 179 | 112 | 7 | 1 | 169 | 1 | 176 | 1.20e-15 | 71.2 |
| Msa0239130 | AT4G30590.1 | 34.091 | 132 | 69 | 5 | 5 | 123 | 2 | 128 | 3.06e-15 | 70.5 |
| Msa0239130 | AT4G28365.1 | 31.496 | 127 | 76 | 3 | 29 | 145 | 31 | 156 | 5.62e-15 | 69.7 |
| Msa0239130 | AT5G53870.2 | 28.682 | 129 | 81 | 3 | 29 | 147 | 32 | 159 | 1.16e-14 | 70.9 |
| Msa0239130 | AT5G53870.1 | 28.682 | 129 | 81 | 3 | 29 | 147 | 32 | 159 | 1.38e-14 | 70.5 |
| Msa0239130 | AT3G20570.1 | 33.621 | 116 | 72 | 4 | 11 | 123 | 15 | 128 | 3.78e-14 | 67.8 |
| Msa0239130 | AT4G12880.1 | 33.051 | 118 | 72 | 4 | 12 | 124 | 11 | 126 | 1.44e-13 | 64.7 |
| Msa0239130 | AT4G32490.1 | 30.952 | 126 | 83 | 3 | 1 | 123 | 4 | 128 | 1.53e-13 | 66.2 |
| Msa0239130 | AT3G18590.1 | 35.200 | 125 | 68 | 6 | 6 | 123 | 8 | 126 | 2.66e-13 | 65.1 |
| Msa0239130 | AT5G26330.1 | 30.894 | 123 | 81 | 3 | 3 | 123 | 1 | 121 | 2.90e-13 | 65.1 |
| Msa0239130 | AT1G72230.1 | 33.793 | 145 | 87 | 4 | 7 | 148 | 7 | 145 | 4.27e-13 | 64.3 |
| Msa0239130 | AT2G23990.1 | 31.429 | 140 | 80 | 5 | 7 | 134 | 1 | 136 | 4.73e-13 | 64.7 |
| Msa0239130 | AT1G45063.1 | 35.537 | 121 | 71 | 3 | 29 | 142 | 151 | 271 | 1.31e-12 | 65.1 |
| Msa0239130 | AT3G53330.1 | 37.805 | 82 | 51 | 0 | 44 | 125 | 207 | 288 | 1.53e-12 | 64.7 |
| Msa0239130 | AT1G45063.2 | 38.542 | 96 | 54 | 1 | 43 | 133 | 167 | 262 | 1.73e-12 | 63.9 |
| Msa0239130 | AT1G45063.2 | 28.455 | 123 | 86 | 2 | 2 | 123 | 5 | 126 | 8.65e-11 | 59.3 |
| Msa0239130 | AT3G60280.1 | 33.684 | 95 | 61 | 1 | 29 | 123 | 26 | 118 | 3.26e-12 | 62.8 |
| Msa0239130 | AT1G17800.1 | 31.496 | 127 | 73 | 4 | 8 | 122 | 11 | 135 | 8.71e-12 | 60.1 |
| Msa0239130 | AT3G60270.1 | 32.632 | 95 | 62 | 1 | 29 | 123 | 28 | 120 | 1.52e-11 | 60.5 |
| Msa0239130 | AT5G25090.1 | 25.984 | 127 | 89 | 2 | 1 | 123 | 1 | 126 | 2.07e-11 | 60.1 |
| Msa0239130 | AT5G57920.3 | 34.653 | 101 | 57 | 3 | 44 | 144 | 77 | 168 | 2.13e-11 | 60.5 |
| Msa0239130 | AT5G57920.1 | 34.653 | 101 | 57 | 3 | 44 | 144 | 45 | 136 | 2.32e-11 | 59.7 |
| Msa0239130 | AT2G31050.1 | 29.365 | 126 | 86 | 3 | 1 | 125 | 4 | 127 | 2.51e-11 | 60.1 |
| Msa0239130 | AT5G57920.2 | 34.653 | 101 | 57 | 3 | 44 | 144 | 44 | 135 | 2.62e-11 | 59.7 |
| Msa0239130 | AT1G48940.1 | 30.534 | 131 | 75 | 7 | 3 | 123 | 1 | 125 | 9.85e-11 | 58.2 |
Find 69 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCTGGAAGGGTCTTC+AGG | 0.183157 | 2_2:+13259298 | Msa0239130:CDS |
| GATTTGAAGTATTTGGCTTT+TGG | 0.211682 | 2_2:+13261581 | Msa0239130:three_prime_UTR |
| GATATCTTATCTTGGTCTTC+TGG | 0.246012 | 2_2:+13259285 | Msa0239130:CDS |
| GCGGCTTACAACCCATCTTT+AGG | 0.253584 | 2_2:+13261770 | Msa0239130:three_prime_UTR |
| TGCGTTTGATTTGAAGTATT+TGG | 0.270313 | 2_2:+13261574 | Msa0239130:three_prime_UTR |
| AGTTATAAGACTACAATTTC+AGG | 0.273910 | 2_2:-13261734 | None:intergenic |
| CCTTCAGTGTACATCTTGAT+AGG | 0.277915 | 2_2:-13261179 | None:intergenic |
| TGATATAAGACTAAGAATTA+AGG | 0.284844 | 2_2:+13261443 | Msa0239130:exon |
| GTCTTCTGGAAGGGTCTTCA+GGG | 0.324887 | 2_2:+13259299 | Msa0239130:CDS |
| CGGCTTACAACCCATCTTTA+GGG | 0.337408 | 2_2:+13261771 | Msa0239130:three_prime_UTR |
| AAGCATATCTAAGTGTAGTT+TGG | 0.358742 | 2_2:+13261526 | Msa0239130:three_prime_UTR |
| GATGGCCCCACTACTCCTTC+TGG | 0.364828 | 2_2:+13261353 | Msa0239130:CDS |
| CCTTCTGGTTCAACCCGTTA+TGG | 0.376600 | 2_2:+13261368 | Msa0239130:CDS |
| AATTGCATTGTGACCATAAC+GGG | 0.383855 | 2_2:-13261381 | None:intergenic |
| CAAGATAAGATATCTGAGTT+TGG | 0.386736 | 2_2:-13259276 | None:intergenic |
| TGGTGGTTAGTATGTGTATA+TGG | 0.401517 | 2_2:-13259117 | None:intergenic |
| TGTTGTGGTGGCTATGATCA+TGG | 0.446485 | 2_2:+13259200 | Msa0239130:CDS |
| TCTGGAAGGGTCTTCAGGGT+TGG | 0.446855 | 2_2:+13259303 | Msa0239130:CDS |
| TATTGTTGGTGTTATTGTTG+TGG | 0.450722 | 2_2:+13259185 | Msa0239130:CDS |
| CAAACTCAGATATCTTATCT+TGG | 0.452486 | 2_2:+13259277 | Msa0239130:CDS |
| TCAAACGCAACAACACAAAC+TGG | 0.453997 | 2_2:-13261560 | None:intergenic |
| TCTTATCTTGGTCTTCTGGA+AGG | 0.465478 | 2_2:+13259289 | Msa0239130:CDS |
| ATATATAAGTTCTTTAGATA+AGG | 0.469239 | 2_2:+13261492 | Msa0239130:three_prime_UTR |
| TATACTAATGAAGATGAAGA+TGG | 0.477877 | 2_2:-13259140 | None:intergenic |
| AGTAGAGTTAATAGAAGTAA+CGG | 0.479685 | 2_2:-13259086 | None:intergenic |
| ATGTCAAACACCCCTAAAGA+TGG | 0.485984 | 2_2:-13261782 | None:intergenic |
| CTGATTCCTTCCTTCTCAAG+TGG | 0.488375 | 2_2:-13261215 | None:intergenic |
| GACTCTGAGAATTGCAAGAA+TGG | 0.490223 | 2_2:+13261254 | Msa0239130:CDS |
| GCATGTAAAGGTGAGTCCTT+AGG | 0.490430 | 2_2:-13261302 | None:intergenic |
| AAGGAAAGAAAAGTGGTTGT+TGG | 0.496166 | 2_2:+13259005 | Msa0239130:five_prime_UTR |
| CATGTGGTGGGAGGAGATCA+TGG | 0.500069 | 2_2:+13259246 | Msa0239130:CDS |
| CTTATCTTGGTCTTCTGGAA+GGG | 0.509677 | 2_2:+13259290 | Msa0239130:CDS |
| ATTATTCTTATGTGTCATTG+TGG | 0.516996 | 2_2:+13261409 | Msa0239130:CDS |
| TGATTCCTTCCTTCTCAAGT+GGG | 0.519146 | 2_2:-13261214 | None:intergenic |
| TGTTGGTGTTATTGTTGTGG+TGG | 0.528689 | 2_2:+13259188 | Msa0239130:CDS |
| ATAACTATTGTGACATTGTG+CGG | 0.528932 | 2_2:+13261751 | Msa0239130:three_prime_UTR |
| AAAATGGGAGGGATTATTGT+TGG | 0.529854 | 2_2:+13259171 | Msa0239130:CDS |
| GCTACAGCAGTTTGAGTGAT+GGG | 0.531626 | 2_2:-13261329 | None:intergenic |
| TGGTGGGAGGAGATCATGGA+TGG | 0.532106 | 2_2:+13259250 | Msa0239130:CDS |
| CTTCAGTGTACATCTTGATA+GGG | 0.537862 | 2_2:-13261178 | None:intergenic |
| GGTGATGAAGGAAAGAAAAG+TGG | 0.538846 | 2_2:+13258998 | Msa0239130:five_prime_UTR |
| CAATGTTGAGGTTCAACCTA+AGG | 0.547000 | 2_2:+13261286 | Msa0239130:CDS |
| ACATACAATCCCACTTGAGA+AGG | 0.548716 | 2_2:+13261205 | Msa0239130:CDS |
| AGCTACAGCAGTTTGAGTGA+TGG | 0.569284 | 2_2:-13261330 | None:intergenic |
| AGCACAAGGATTAGTTGCAG+AGG | 0.587702 | 2_2:+13261115 | Msa0239130:CDS |
| GTTGAACCAGAAGGAGTAGT+GGG | 0.587775 | 2_2:-13261359 | None:intergenic |
| GAATTGCATTGTGACCATAA+CGG | 0.591715 | 2_2:-13261382 | None:intergenic |
| ACTCAAACTGCTGTAGCTGA+TGG | 0.598850 | 2_2:+13261335 | Msa0239130:CDS |
| AGCAGTTTGAGTGATGGGTA+AGG | 0.601567 | 2_2:-13261324 | None:intergenic |
| TGTCAAACACCCCTAAAGAT+GGG | 0.603042 | 2_2:-13261781 | None:intergenic |
| TATAAGACTAAGAATTAAGG+AGG | 0.603529 | 2_2:+13261446 | Msa0239130:three_prime_UTR |
| TGGTCTCAAACTCAATGTTG+AGG | 0.612269 | 2_2:+13261274 | Msa0239130:CDS |
| ACAATCCCACTTGAGAAGGA+AGG | 0.616800 | 2_2:+13261209 | Msa0239130:CDS |
| AAGTGAGGTACATCATGTGG+TGG | 0.620896 | 2_2:+13259233 | Msa0239130:CDS |
| GGCTTACAACCCATCTTTAG+GGG | 0.622594 | 2_2:+13261772 | Msa0239130:three_prime_UTR |
| TTTGCGTACTCAGCAGCACA+AGG | 0.622683 | 2_2:+13261101 | Msa0239130:CDS |
| GGTGGCTATGATCATGGATG+TGG | 0.628192 | 2_2:+13259206 | Msa0239130:CDS |
| GGTTGAACCAGAAGGAGTAG+TGG | 0.631430 | 2_2:-13261360 | None:intergenic |
| CCTATCAAGATGTACACTGA+AGG | 0.642758 | 2_2:+13261179 | Msa0239130:CDS |
| AATGAAGATGAAGATGGTGG+TGG | 0.643513 | 2_2:-13259134 | None:intergenic |
| CCATAACGGGTTGAACCAGA+AGG | 0.643981 | 2_2:-13261368 | None:intergenic |
| GAGGTACATCATGTGGTGGG+AGG | 0.644833 | 2_2:+13259237 | Msa0239130:CDS |
| GTGATGGGTAAGGCATGTAA+AGG | 0.652419 | 2_2:-13261314 | None:intergenic |
| AGTGAGGTACATCATGTGGT+GGG | 0.661400 | 2_2:+13259234 | Msa0239130:CDS |
| AACAAGTGAGGTACATCATG+TGG | 0.692455 | 2_2:+13259230 | Msa0239130:CDS |
| ACTAATGAAGATGAAGATGG+TGG | 0.699589 | 2_2:-13259137 | None:intergenic |
| GGTGGGAGGAGATCATGGAT+GGG | 0.702174 | 2_2:+13259251 | Msa0239130:CDS |
| CATGGATGTGGCAACAAGTG+AGG | 0.703901 | 2_2:+13259218 | Msa0239130:CDS |
| TTGAACCAGAAGGAGTAGTG+GGG | 0.725374 | 2_2:-13261358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTATTTTATTAA+AGG | - | chr2_2:13259696-13259715 | None:intergenic | 0.0% |
| !! | AATTAATTATATTAATTTAA+AGG | + | chr2_2:13260077-13260096 | Msa0239130:intron | 0.0% |
| !! | TTAGTATAAAAAAATGAAAA+TGG | + | chr2_2:13259155-13259174 | Msa0239130:exon | 10.0% |
| !! | TAGTATAAAAAAATGAAAAT+GGG | + | chr2_2:13259156-13259175 | Msa0239130:exon | 10.0% |
| !!! | TTGTTTTATACAAAAAATTT+AGG | + | chr2_2:13259519-13259538 | Msa0239130:intron | 10.0% |
| !!! | TATTTTATTATATTTTTGAC+AGG | - | chr2_2:13259759-13259778 | None:intergenic | 10.0% |
| !! | ATAAAACTAATAAAAAACAA+AGG | + | chr2_2:13260376-13260395 | Msa0239130:intron | 10.0% |
| !! | TTTACATATTTATTCTTGAA+CGG | - | chr2_2:13259726-13259745 | None:intergenic | 15.0% |
| !! | TAAAATAGAAAATGGTATTT+AGG | + | chr2_2:13259772-13259791 | Msa0239130:intron | 15.0% |
| !! | AAAATAGAAAATGGTATTTA+GGG | + | chr2_2:13259773-13259792 | Msa0239130:intron | 15.0% |
| !!! | TATAAGTCTTTTTTAGTTTA+GGG | - | chr2_2:13259970-13259989 | None:intergenic | 15.0% |
| !!! | TTATAAGTCTTTTTTAGTTT+AGG | - | chr2_2:13259971-13259990 | None:intergenic | 15.0% |
| !!! | TATTAGTTTTATGTTTTTGA+AGG | - | chr2_2:13260368-13260387 | None:intergenic | 15.0% |
| !! | ATAATATTATTACTCTTTGT+TGG | - | chr2_2:13260709-13260728 | None:intergenic | 15.0% |
| !!! | ATGACAAACATTTTATTTAT+GGG | + | chr2_2:13261073-13261092 | Msa0239130:intron | 15.0% |
| !! | ATATATAAGTTCTTTAGATA+AGG | + | chr2_2:13261492-13261511 | Msa0239130:three_prime_UTR | 15.0% |
| !!! | ATAATTTTTTTTGCTGAGAA+TGG | - | chr2_2:13259037-13259056 | None:intergenic | 20.0% |
| !! | TATAAAAAAATGAAAATGGG+AGG | + | chr2_2:13259159-13259178 | Msa0239130:exon | 20.0% |
| !! | ATAAAAAAATGAAAATGGGA+GGG | + | chr2_2:13259160-13259179 | Msa0239130:exon | 20.0% |
| !! | AAGAAAAAGACATACATATT+TGG | - | chr2_2:13259332-13259351 | None:intergenic | 20.0% |
| !! | ATGAAACTTACATGATTAAA+GGG | - | chr2_2:13259406-13259425 | None:intergenic | 20.0% |
| !!! | AAAACAGCATATTTTATGAA+AGG | - | chr2_2:13259433-13259452 | None:intergenic | 20.0% |
| !!! | TATACAAAAAATTTAGGATG+AGG | + | chr2_2:13259525-13259544 | Msa0239130:intron | 20.0% |
| !! | ATTGATTATTACCAATTGAT+TGG | + | chr2_2:13259640-13259659 | Msa0239130:intron | 20.0% |
| !!! | ATAAGTCTTTTTTAGTTTAG+GGG | - | chr2_2:13259969-13259988 | None:intergenic | 20.0% |
| !! | AAAAGAAATAGACAATTGTA+GGG | - | chr2_2:13260233-13260252 | None:intergenic | 20.0% |
| !! | AAAAAGAAATAGACAATTGT+AGG | - | chr2_2:13260234-13260253 | None:intergenic | 20.0% |
| !! | TTATCAAATTAAGTTAATGC+AGG | - | chr2_2:13260304-13260323 | None:intergenic | 20.0% |
| !!! | TGCATTAACTTAATTTGATA+AGG | + | chr2_2:13260303-13260322 | Msa0239130:intron | 20.0% |
| !! | TATTGAGAAAAGGATAAAAA+TGG | + | chr2_2:13260429-13260448 | Msa0239130:intron | 20.0% |
| !! | AGAAAAATCTATCTATTCTA+TGG | - | chr2_2:13260788-13260807 | None:intergenic | 20.0% |
| !!! | AAGTGAAATTCAATTTGTTT+TGG | + | chr2_2:13260819-13260838 | Msa0239130:intron | 20.0% |
| !! | ATGTAAATTCTTAAAGAAGT+TGG | + | chr2_2:13260957-13260976 | Msa0239130:intron | 20.0% |
| !! | AGAAAAAGTTTAGATTAAGA+GGG | - | chr2_2:13261011-13261030 | None:intergenic | 20.0% |
| !!! | GATGACAAACATTTTATTTA+TGG | + | chr2_2:13261072-13261091 | Msa0239130:intron | 20.0% |
| !! | TGATATAAGACTAAGAATTA+AGG | + | chr2_2:13261443-13261462 | Msa0239130:exon | 20.0% |
| !! | ACAACAGAACAAAAAAAAAT+TGG | + | chr2_2:13261636-13261655 | Msa0239130:three_prime_UTR | 20.0% |
| !!! | CAAAAAAAAATTGGTGTTTT+TGG | + | chr2_2:13261645-13261664 | Msa0239130:three_prime_UTR | 20.0% |
| !!! | TGTCAAATATATTTTGTTCA+AGG | + | chr2_2:13261705-13261724 | Msa0239130:three_prime_UTR | 20.0% |
| ! | AGTAGAGTTAATAGAAGTAA+CGG | - | chr2_2:13259089-13259108 | None:intergenic | 25.0% |
| ! | TATACTAATGAAGATGAAGA+TGG | - | chr2_2:13259143-13259162 | None:intergenic | 25.0% |
| ! | CATGAAACTTACATGATTAA+AGG | - | chr2_2:13259407-13259426 | None:intergenic | 25.0% |
| ! | TAGATTCAAAATGGAATGAT+TGG | + | chr2_2:13259480-13259499 | Msa0239130:intron | 25.0% |
| ! | AGATTCAAAATGGAATGATT+GGG | + | chr2_2:13259481-13259500 | Msa0239130:intron | 25.0% |
| !! | AAAAAATTTAGGATGAGGAA+TGG | + | chr2_2:13259530-13259549 | Msa0239130:intron | 25.0% |
| ! | ATTATAGACATCCAATCAAT+TGG | - | chr2_2:13259654-13259673 | None:intergenic | 25.0% |
| ! | AGAAATAGAGTAGATTTGAT+AGG | + | chr2_2:13259869-13259888 | Msa0239130:intron | 25.0% |
| ! | GGGTTATAAAAATTATAGAC+GGG | - | chr2_2:13260212-13260231 | None:intergenic | 25.0% |
| ! | GGGGTTATAAAAATTATAGA+CGG | - | chr2_2:13260213-13260232 | None:intergenic | 25.0% |
| ! | AAAGAAATAGACAATTGTAG+GGG | - | chr2_2:13260232-13260251 | None:intergenic | 25.0% |
| ! | AAATGGAATTTCAAGAAACA+TGG | + | chr2_2:13260446-13260465 | Msa0239130:intron | 25.0% |
| ! | AATGGAATTTCAAGAAACAT+GGG | + | chr2_2:13260447-13260466 | Msa0239130:intron | 25.0% |
| ! | AAACTTTCAATCACTATGTT+TGG | - | chr2_2:13260637-13260656 | None:intergenic | 25.0% |
| ! | TAAATTCTTAAAGAAGTTGG+TGG | + | chr2_2:13260960-13260979 | Msa0239130:intron | 25.0% |
| ! | GAGAAAAAGTTTAGATTAAG+AGG | - | chr2_2:13261012-13261031 | None:intergenic | 25.0% |
| !!! | AAACATTTTATTTATGGGCA+GGG | + | chr2_2:13261078-13261097 | Msa0239130:intron | 25.0% |
| !! | ATTATTCTTATGTGTCATTG+TGG | + | chr2_2:13261409-13261428 | Msa0239130:CDS | 25.0% |
| ! | TATAAGACTAAGAATTAAGG+AGG | + | chr2_2:13261446-13261465 | Msa0239130:three_prime_UTR | 25.0% |
| !!! | ATTTGAAGTATTTGGCTTTT+GGG | + | chr2_2:13261582-13261601 | Msa0239130:three_prime_UTR | 25.0% |
| !!! | TTTTTTTGTTCTGTTGTCTA+TGG | - | chr2_2:13261633-13261652 | None:intergenic | 25.0% |
| !!! | AATTGGTGTTTTTGGAATTT+TGG | + | chr2_2:13261653-13261672 | Msa0239130:three_prime_UTR | 25.0% |
| ! | AGTTATAAGACTACAATTTC+AGG | - | chr2_2:13261737-13261756 | None:intergenic | 25.0% |
| !!! | TTGCTTCATGTGACTTTTTT+AGG | + | chr2_2:13258977-13258996 | Msa0239130:five_prime_UTR | 30.0% |
| !! | TATTGTTGGTGTTATTGTTG+TGG | + | chr2_2:13259185-13259204 | Msa0239130:CDS | 30.0% |
| CAAGATAAGATATCTGAGTT+TGG | - | chr2_2:13259279-13259298 | None:intergenic | 30.0% | |
| CAAACTCAGATATCTTATCT+TGG | + | chr2_2:13259277-13259296 | Msa0239130:CDS | 30.0% | |
| AACTTACATGATTAAAGGGT+GGG | - | chr2_2:13259402-13259421 | None:intergenic | 30.0% | |
| AAACTTACATGATTAAAGGG+TGG | - | chr2_2:13259403-13259422 | None:intergenic | 30.0% | |
| GATTCAAAATGGAATGATTG+GGG | + | chr2_2:13259482-13259501 | Msa0239130:intron | 30.0% | |
| ATTCAAAATGGAATGATTGG+GGG | + | chr2_2:13259483-13259502 | Msa0239130:intron | 30.0% | |
| TTGGATGTCTATAATGAGAA+AGG | + | chr2_2:13259659-13259678 | Msa0239130:intron | 30.0% | |
| TAATGAGAAAGGAGAAATAG+AGG | + | chr2_2:13259670-13259689 | Msa0239130:intron | 30.0% | |
| AGTAGATTTGATAGGTTGTT+TGG | + | chr2_2:13259877-13259896 | Msa0239130:intron | 30.0% | |
| !! | TGTCTATTTCTTTTTGTGTG+CGG | + | chr2_2:13260239-13260258 | Msa0239130:intron | 30.0% |
| ! | TTTTCTCAATAAAACTGCCA+CGG | - | chr2_2:13260420-13260439 | None:intergenic | 30.0% |
| !! | CAAACATTTTATTTATGGGC+AGG | + | chr2_2:13261077-13261096 | Msa0239130:intron | 30.0% |
| AAGCATATCTAAGTGTAGTT+TGG | + | chr2_2:13261526-13261545 | Msa0239130:three_prime_UTR | 30.0% | |
| !! | TGCGTTTGATTTGAAGTATT+TGG | + | chr2_2:13261574-13261593 | Msa0239130:three_prime_UTR | 30.0% |
| !!! | GATTTGAAGTATTTGGCTTT+TGG | + | chr2_2:13261581-13261600 | Msa0239130:three_prime_UTR | 30.0% |
| ATAACTATTGTGACATTGTG+CGG | + | chr2_2:13261751-13261770 | Msa0239130:three_prime_UTR | 30.0% | |
| !!! | GTGACTTTTTTAGGTGATGA+AGG | + | chr2_2:13258986-13259005 | Msa0239130:five_prime_UTR | 35.0% |
| AAGGAAAGAAAAGTGGTTGT+TGG | + | chr2_2:13259005-13259024 | Msa0239130:five_prime_UTR | 35.0% | |
| TGGTGGTTAGTATGTGTATA+TGG | - | chr2_2:13259120-13259139 | None:intergenic | 35.0% | |
| ACTAATGAAGATGAAGATGG+TGG | - | chr2_2:13259140-13259159 | None:intergenic | 35.0% | |
| AAAATGGGAGGGATTATTGT+TGG | + | chr2_2:13259171-13259190 | Msa0239130:CDS | 35.0% | |
| ! | GATATCTTATCTTGGTCTTC+TGG | + | chr2_2:13259285-13259304 | Msa0239130:CDS | 35.0% |
| GATTAAAGGGTGGGAAAAAA+GGG | - | chr2_2:13259393-13259412 | None:intergenic | 35.0% | |
| TGATTAAAGGGTGGGAAAAA+AGG | - | chr2_2:13259394-13259413 | None:intergenic | 35.0% | |
| CACAAGAGCTAGATTCAAAA+TGG | + | chr2_2:13259471-13259490 | Msa0239130:intron | 35.0% | |
| GAAAGTGATAAGAGAGAAAG+AGG | + | chr2_2:13259814-13259833 | Msa0239130:intron | 35.0% | |
| GAGAGATAGAAGAGAAATGA+AGG | + | chr2_2:13259905-13259924 | Msa0239130:intron | 35.0% | |
| !!! | GTGGCAGTTTTATTGAGAAA+AGG | + | chr2_2:13260419-13260438 | Msa0239130:intron | 35.0% |
| !!! | AGGAGAGAGAGTTTTTTCAT+GGG | - | chr2_2:13260526-13260545 | None:intergenic | 35.0% |
| ! | TTGATTTCTGTCGTTTGGAA+TGG | - | chr2_2:13260559-13260578 | None:intergenic | 35.0% |
| AAGTCTTGATTTCTGTCGTT+TGG | - | chr2_2:13260564-13260583 | None:intergenic | 35.0% | |
| AAGTCACATGTGTAAGTGAA+AGG | - | chr2_2:13260922-13260941 | None:intergenic | 35.0% | |
| CTTCAGTGTACATCTTGATA+GGG | - | chr2_2:13261181-13261200 | None:intergenic | 35.0% | |
| AATTGCATTGTGACCATAAC+GGG | - | chr2_2:13261384-13261403 | None:intergenic | 35.0% | |
| GAATTGCATTGTGACCATAA+CGG | - | chr2_2:13261385-13261404 | None:intergenic | 35.0% | |
| !!! | AGTGTAGTTTGGTTTTACTC+TGG | + | chr2_2:13261537-13261556 | Msa0239130:three_prime_UTR | 35.0% |
| GGTGATGAAGGAAAGAAAAG+TGG | + | chr2_2:13258998-13259017 | Msa0239130:five_prime_UTR | 40.0% | |
| ! | AATGAAGATGAAGATGGTGG+TGG | - | chr2_2:13259137-13259156 | None:intergenic | 40.0% |
| !! | TGTTGGTGTTATTGTTGTGG+TGG | + | chr2_2:13259188-13259207 | Msa0239130:CDS | 40.0% |
| AACAAGTGAGGTACATCATG+TGG | + | chr2_2:13259230-13259249 | Msa0239130:CDS | 40.0% | |
| ! | TCTTATCTTGGTCTTCTGGA+AGG | + | chr2_2:13259289-13259308 | Msa0239130:CDS | 40.0% |
| ! | CTTATCTTGGTCTTCTGGAA+GGG | + | chr2_2:13259290-13259309 | Msa0239130:CDS | 40.0% |
| GTTCTTCATTCTAACTCTGC+TGG | - | chr2_2:13259563-13259582 | None:intergenic | 40.0% | |
| ! | AATGGTATTTAGGGTGCGTT+TGG | + | chr2_2:13259782-13259801 | Msa0239130:intron | 40.0% |
| GAAAGAGGTGAGAAAGAGTA+TGG | + | chr2_2:13259829-13259848 | Msa0239130:intron | 40.0% | |
| CACGGAAGAAGAAAAGGTTT+GGG | - | chr2_2:13260402-13260421 | None:intergenic | 40.0% | |
| GGATAGAGAAGACCAGAAAA+AGG | + | chr2_2:13260493-13260512 | Msa0239130:intron | 40.0% | |
| ! | AGAAGACCAGAAAAAGGTGT+GGG | + | chr2_2:13260499-13260518 | Msa0239130:intron | 40.0% |
| !!! | GAGGAGAGAGAGTTTTTTCA+TGG | - | chr2_2:13260527-13260546 | None:intergenic | 40.0% |
| ! | TTTGGAATGGAGAGAAACTG+AGG | - | chr2_2:13260546-13260565 | None:intergenic | 40.0% |
| CCTTCAGTGTACATCTTGAT+AGG | - | chr2_2:13261182-13261201 | None:intergenic | 40.0% | |
| CCTATCAAGATGTACACTGA+AGG | + | chr2_2:13261179-13261198 | Msa0239130:CDS | 40.0% | |
| ACATACAATCCCACTTGAGA+AGG | + | chr2_2:13261205-13261224 | Msa0239130:CDS | 40.0% | |
| TGATTCCTTCCTTCTCAAGT+GGG | - | chr2_2:13261217-13261236 | None:intergenic | 40.0% | |
| ! | GACTCTGAGAATTGCAAGAA+TGG | + | chr2_2:13261254-13261273 | Msa0239130:CDS | 40.0% |
| TGGTCTCAAACTCAATGTTG+AGG | + | chr2_2:13261274-13261293 | Msa0239130:CDS | 40.0% | |
| CAATGTTGAGGTTCAACCTA+AGG | + | chr2_2:13261286-13261305 | Msa0239130:CDS | 40.0% | |
| TCAAACGCAACAACACAAAC+TGG | - | chr2_2:13261563-13261582 | None:intergenic | 40.0% | |
| TGTCAAACACCCCTAAAGAT+GGG | - | chr2_2:13261784-13261803 | None:intergenic | 40.0% | |
| ATGTCAAACACCCCTAAAGA+TGG | - | chr2_2:13261785-13261804 | None:intergenic | 40.0% | |
| TGTTGTGGTGGCTATGATCA+TGG | + | chr2_2:13259200-13259219 | Msa0239130:CDS | 45.0% | |
| AAGTGAGGTACATCATGTGG+TGG | + | chr2_2:13259233-13259252 | Msa0239130:CDS | 45.0% | |
| AGTGAGGTACATCATGTGGT+GGG | + | chr2_2:13259234-13259253 | Msa0239130:CDS | 45.0% | |
| ! | ATTTAGGGTGCGTTTGGTTG+TGG | + | chr2_2:13259788-13259807 | Msa0239130:intron | 45.0% |
| GAGTATGGTGAGAGAGAAAG+CGG | + | chr2_2:13259844-13259863 | Msa0239130:intron | 45.0% | |
| CCACGGAAGAAGAAAAGGTT+TGG | - | chr2_2:13260403-13260422 | None:intergenic | 45.0% | |
| ! | CCAAACCTTTTCTTCTTCCG+TGG | + | chr2_2:13260400-13260419 | Msa0239130:intron | 45.0% |
| AACTGCCACGGAAGAAGAAA+AGG | - | chr2_2:13260408-13260427 | None:intergenic | 45.0% | |
| CTTCTCTATCCAGCGAAGAA+AGG | - | chr2_2:13260484-13260503 | None:intergenic | 45.0% | |
| GAGAAGACCAGAAAAAGGTG+TGG | + | chr2_2:13260498-13260517 | Msa0239130:intron | 45.0% | |
| ACCACTTGCGTTGTTGCAAA+TGG | + | chr2_2:13260891-13260910 | Msa0239130:intron | 45.0% | |
| ACCATTTGCAACAACGCAAG+TGG | - | chr2_2:13260895-13260914 | None:intergenic | 45.0% | |
| !! | AGCACAAGGATTAGTTGCAG+AGG | + | chr2_2:13261115-13261134 | Msa0239130:CDS | 45.0% |
| ACAATCCCACTTGAGAAGGA+AGG | + | chr2_2:13261209-13261228 | Msa0239130:CDS | 45.0% | |
| CTGATTCCTTCCTTCTCAAG+TGG | - | chr2_2:13261218-13261237 | None:intergenic | 45.0% | |
| GCATGTAAAGGTGAGTCCTT+AGG | - | chr2_2:13261305-13261324 | None:intergenic | 45.0% | |
| !! | GTGATGGGTAAGGCATGTAA+AGG | - | chr2_2:13261317-13261336 | None:intergenic | 45.0% |
| !! | AGCAGTTTGAGTGATGGGTA+AGG | - | chr2_2:13261327-13261346 | None:intergenic | 45.0% |
| GCTACAGCAGTTTGAGTGAT+GGG | - | chr2_2:13261332-13261351 | None:intergenic | 45.0% | |
| AGCTACAGCAGTTTGAGTGA+TGG | - | chr2_2:13261333-13261352 | None:intergenic | 45.0% | |
| ACTCAAACTGCTGTAGCTGA+TGG | + | chr2_2:13261335-13261354 | Msa0239130:CDS | 45.0% | |
| TTGAACCAGAAGGAGTAGTG+GGG | - | chr2_2:13261361-13261380 | None:intergenic | 45.0% | |
| GTTGAACCAGAAGGAGTAGT+GGG | - | chr2_2:13261362-13261381 | None:intergenic | 45.0% | |
| CGGCTTACAACCCATCTTTA+GGG | + | chr2_2:13261771-13261790 | Msa0239130:three_prime_UTR | 45.0% | |
| GGCTTACAACCCATCTTTAG+GGG | + | chr2_2:13261772-13261791 | Msa0239130:three_prime_UTR | 45.0% | |
| !! | AAATATAATAAAATAGAAAA+TGG | + | chr2_2:13259764-13259783 | Msa0239130:intron | 5.0% |
| GGTGGCTATGATCATGGATG+TGG | + | chr2_2:13259206-13259225 | Msa0239130:CDS | 50.0% | |
| CATGGATGTGGCAACAAGTG+AGG | + | chr2_2:13259218-13259237 | Msa0239130:CDS | 50.0% | |
| ! | GTCTTCTGGAAGGGTCTTCA+GGG | + | chr2_2:13259299-13259318 | Msa0239130:CDS | 50.0% |
| TTTCCACCTCCTTTCTTCGC+TGG | + | chr2_2:13260472-13260491 | Msa0239130:intron | 50.0% | |
| TATCCAGCGAAGAAAGGAGG+TGG | - | chr2_2:13260478-13260497 | None:intergenic | 50.0% | |
| CTCTATCCAGCGAAGAAAGG+AGG | - | chr2_2:13260481-13260500 | None:intergenic | 50.0% | |
| ! | ATGGGTCCCACACCTTTTTC+TGG | - | chr2_2:13260508-13260527 | None:intergenic | 50.0% |
| TTTGCGTACTCAGCAGCACA+AGG | + | chr2_2:13261101-13261120 | Msa0239130:CDS | 50.0% | |
| GGTTGAACCAGAAGGAGTAG+TGG | - | chr2_2:13261363-13261382 | None:intergenic | 50.0% | |
| !! | CCATAACGGGTTGAACCAGA+AGG | - | chr2_2:13261371-13261390 | None:intergenic | 50.0% |
| !! | CCTTCTGGTTCAACCCGTTA+TGG | + | chr2_2:13261368-13261387 | Msa0239130:CDS | 50.0% |
| GCGGCTTACAACCCATCTTT+AGG | + | chr2_2:13261770-13261789 | Msa0239130:three_prime_UTR | 50.0% | |
| ! | GAGGTACATCATGTGGTGGG+AGG | + | chr2_2:13259237-13259256 | Msa0239130:CDS | 55.0% |
| ! | CATGTGGTGGGAGGAGATCA+TGG | + | chr2_2:13259246-13259265 | Msa0239130:CDS | 55.0% |
| TGGTGGGAGGAGATCATGGA+TGG | + | chr2_2:13259250-13259269 | Msa0239130:CDS | 55.0% | |
| GGTGGGAGGAGATCATGGAT+GGG | + | chr2_2:13259251-13259270 | Msa0239130:CDS | 55.0% | |
| ! | GGTCTTCTGGAAGGGTCTTC+AGG | + | chr2_2:13259298-13259317 | Msa0239130:CDS | 55.0% |
| TCTGGAAGGGTCTTCAGGGT+TGG | + | chr2_2:13259303-13259322 | Msa0239130:CDS | 55.0% | |
| GATGGCCCCACTACTCCTTC+TGG | + | chr2_2:13261353-13261372 | Msa0239130:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 13258972 | 13261825 | 13258972 | ID=Msa0239130;Name=Msa0239130 |
| chr2_2 | mRNA | 13258972 | 13261825 | 13258972 | ID=Msa0239130-mRNA-1;Parent=Msa0239130;Name=Msa0239130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=196|1|1|1|1|1|2|380|171 |
| chr2_2 | exon | 13258972 | 13259336 | 13258972 | ID=Msa0239130-mRNA-1:exon:5551;Parent=Msa0239130-mRNA-1 |
| chr2_2 | exon | 13261099 | 13261825 | 13261099 | ID=Msa0239130-mRNA-1:exon:5552;Parent=Msa0239130-mRNA-1 |
| chr2_2 | five_prime_UTR | 13258972 | 13259167 | 13258972 | ID=Msa0239130-mRNA-1:five_prime_utr;Parent=Msa0239130-mRNA-1 |
| chr2_2 | CDS | 13259168 | 13259336 | 13259168 | ID=Msa0239130-mRNA-1:cds;Parent=Msa0239130-mRNA-1 |
| chr2_2 | CDS | 13261099 | 13261445 | 13261099 | ID=Msa0239130-mRNA-1:cds;Parent=Msa0239130-mRNA-1 |
| chr2_2 | three_prime_UTR | 13261446 | 13261825 | 13261446 | ID=Msa0239130-mRNA-1:three_prime_utr;Parent=Msa0239130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
