AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0450440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450440 MtrunA17_Chr3g0117271 95.717 467 18 1 1 467 32 496 0.0 912
Msa0450440 MtrunA17_Chr4g0058771 73.069 479 108 8 6 467 7 481 0.0 701
Msa0450440 MtrunA17_Chr5g0413131 63.203 462 154 8 8 467 16 463 0.0 588
Msa0450440 MtrunA17_Chr8g0368161 69.251 387 116 3 83 467 63 448 0.0 575
Msa0450440 MtrunA17_Chr2g0314461 58.656 387 150 8 83 467 28 406 4.19e-163 466
Msa0450440 MtrunA17_Chr8g0368241 54.306 418 180 6 52 467 6 414 1.13e-161 463
Msa0450440 MtrunA17_Chr7g0274951 57.289 391 143 7 100 466 49 439 3.52e-159 457
Msa0450440 MtrunA17_Chr1g0189961 55.860 401 144 8 100 467 51 451 2.78e-156 451
Msa0450440 MtrunA17_Chr2g0314471 56.266 391 162 8 79 467 23 406 3.51e-156 449
Msa0450440 MtrunA17_Chr8g0380511 56.021 382 149 7 103 466 35 415 1.43e-155 447
Msa0450440 MtrunA17_Chr2g0314451 55.128 390 168 5 79 467 22 405 2.14e-154 444
Msa0450440 MtrunA17_Chr2g0309251 55.670 388 151 6 100 467 40 426 1.70e-153 442
Msa0450440 MtrunA17_Chr8g0368201 54.633 313 125 3 171 467 9 320 5.03e-123 361
Msa0450440 MtrunA17_Chr8g0368291 46.411 418 197 12 58 467 7 405 1.43e-121 360
Msa0450440 MtrunA17_Chr8g0368341 51.003 349 151 8 122 467 4 335 1.50e-117 348
Msa0450440 MtrunA17_Chr3g0129891 41.778 450 171 12 23 466 15 379 4.25e-109 328
Msa0450440 MtrunA17_Chr2g0326371 50.301 332 141 11 147 467 42 360 2.17e-101 307
Msa0450440 MtrunA17_Chr8g0368221 59.109 247 95 3 97 343 18 258 2.90e-100 301
Msa0450440 MtrunA17_Chr8g0368181 64.062 192 69 0 276 467 2 193 1.13e-89 271
Msa0450440 MtrunA17_Chr3g0135381 40.933 386 197 9 104 462 51 432 1.32e-87 276
Msa0450440 MtrunA17_Chr3g0135371 38.974 390 207 9 104 467 51 435 3.14e-86 271
Msa0450440 MtrunA17_Chr6g0453411 40.323 372 193 9 121 467 8 375 9.04e-86 268
Msa0450440 MtrunA17_Chr3g0135401 39.564 321 166 7 167 463 30 346 2.22e-70 227
Msa0450440 MtrunA17_Chr8g0368351 50.000 224 94 5 56 277 41 248 1.71e-68 219
Msa0450440 MtrunA17_Chr8g0368361 50.769 195 92 3 276 467 2 195 1.91e-67 214
Msa0450440 MtrunA17_Chr8g0368331 39.711 277 134 5 221 467 13 286 2.37e-67 217
Msa0450440 MtrunA17_Chr1g0151871 37.667 300 172 7 171 467 40 327 1.41e-65 214
Msa0450440 MtrunA17_Chr8g0368281 49.741 193 95 2 276 466 2 194 7.33e-65 207
Msa0450440 MtrunA17_Chr8g0368231 60.800 125 48 1 344 467 8 132 7.83e-50 166
Msa0450440 MtrunA17_Chr3g0138811 29.708 377 216 10 40 414 3 332 5.82e-48 169
Msa0450440 MtrunA17_Chr3g0135431 42.466 219 100 4 104 298 44 260 4.03e-47 167
Msa0450440 MtrunA17_Chr8g0368261 55.814 129 56 1 340 467 1 129 6.72e-47 158
Msa0450440 MtrunA17_Chr8g0368171 47.429 175 69 3 105 277 51 204 1.49e-44 155
Msa0450440 MtrunA17_Chr8g0368271 60.000 120 46 2 89 207 35 153 1.46e-41 147
Msa0450440 MtrunA17_Chr8g0368321 56.296 135 49 4 83 215 22 148 3.74e-41 145
Msa0450440 MtrunA17_Chr3g0135441 34.510 255 135 8 221 467 2 232 3.72e-40 144
Msa0450440 MtrunA17_Chr2g0302691 32.213 357 203 13 119 461 37 368 9.18e-39 144
Msa0450440 MtrunA17_Chr8g0368381 51.639 122 56 3 276 394 2 123 2.16e-38 135
Msa0450440 MtrunA17_Chr8g0339871 37.557 221 124 8 251 461 21 237 7.77e-37 135
Msa0450440 MtrunA17_Chr5g0445181 31.186 295 157 10 108 402 49 297 4.34e-31 121
Msa0450440 MtrunA17_Chr8g0391201 34.685 222 127 9 251 461 21 235 7.88e-31 119
Msa0450440 MtrunA17_Chr2g0302651 31.963 219 115 10 254 461 1 196 5.94e-23 96.3
Msa0450440 MtrunA17_Chr3g0135451 42.336 137 52 5 94 208 29 160 1.26e-22 95.5
Msa0450440 MtrunA17_Chr8g0353931 32.673 202 112 7 88 277 14 203 6.55e-22 93.6
Msa0450440 MtrunA17_Chr8g0353971 34.118 170 105 4 296 461 4 170 2.95e-19 85.1
Msa0450440 MtrunA17_Chr8g0353941 31.414 191 116 6 281 464 1 183 6.56e-19 84.3
Msa0450440 MtrunA17_Chr5g0434771 37.903 124 73 2 293 416 15 134 2.25e-18 83.2
Msa0450440 MtrunA17_Chr5g0426971 25.000 236 147 6 229 460 46 255 4.01e-15 75.1
Msa0450440 MtrunA17_Chr8g0353961 34.000 100 65 1 103 201 31 130 9.33e-15 71.6
Msa0450440 MtrunA17_Chr5g0443801 30.000 110 75 2 232 341 22 129 3.75e-12 65.1
Msa0450440 MtrunA17_Chr3g0135411 55.556 54 22 1 94 147 56 107 4.62e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0450440 AT5G50150.1 73.177 384 98 4 87 467 39 420 0.0 607
Msa0450440 AT1G70550.1 70.712 379 109 2 90 467 88 465 0.0 582
Msa0450440 AT1G10750.1 69.393 379 114 2 90 467 90 467 0.0 578
Msa0450440 AT1G23340.2 65.049 412 131 4 57 467 10 409 0.0 575
Msa0450440 AT1G23340.1 65.049 412 131 4 57 467 10 409 0.0 575
Msa0450440 AT1G55360.1 56.456 395 152 8 92 467 29 422 3.59e-160 460
Msa0450440 AT3G13510.1 52.336 428 163 8 57 467 16 419 1.87e-158 455
Msa0450440 AT5G18460.1 56.623 385 149 5 100 466 45 429 1.99e-154 446
Msa0450440 AT5G56530.2 55.381 381 152 6 103 466 40 419 1.17e-153 443
Msa0450440 AT5G56530.1 55.381 381 152 6 103 466 40 419 1.17e-153 443
Msa0450440 AT2G44210.1 52.926 393 164 7 95 467 24 415 5.48e-149 431
Msa0450440 AT2G44210.2 50.120 415 156 8 103 467 32 445 3.66e-143 417
Msa0450440 AT1G23340.3 63.066 287 94 3 57 343 10 284 1.14e-130 380
Msa0450440 AT2G44220.1 49.867 375 174 7 103 467 33 403 1.29e-130 384
Msa0450440 AT2G44240.1 48.396 374 180 8 103 467 33 402 1.05e-120 358
Msa0450440 AT2G17750.1 44.909 383 195 10 95 466 18 395 5.66e-115 343
Msa0450440 AT2G19360.1 44.924 394 184 8 104 466 34 425 5.27e-110 332
Msa0450440 AT3G48230.1 46.006 363 174 8 118 467 20 373 1.67e-107 324
Msa0450440 AT2G44250.1 46.684 377 182 8 104 466 37 408 1.31e-105 320
Msa0450440 AT1G70550.2 70.244 205 60 1 90 294 88 291 1.36e-101 306
Msa0450440 AT5G19170.1 43.200 375 191 8 98 461 2 365 3.60e-97 298
Msa0450440 AT1G10750.2 57.333 225 94 2 90 313 90 313 2.34e-85 266
Msa0450440 AT2G44250.2 46.178 314 157 6 163 466 14 325 6.46e-85 264
Msa0450440 AT5G25950.1 38.177 406 216 8 90 467 34 432 3.16e-84 266
Msa0450440 AT5G25960.1 35.844 385 198 7 90 467 15 357 3.25e-72 232
Msa0450440 AT2G20170.1 36.010 411 232 12 60 461 8 396 8.37e-72 233
Msa0450440 AT2G20170.2 36.010 411 232 12 60 461 8 396 8.37e-72 233
Msa0450440 AT2G20170.3 33.577 411 225 12 60 461 8 379 3.28e-62 207
Msa0450440 AT4G23360.1 33.155 374 222 12 104 461 38 399 8.55e-61 204
Msa0450440 AT4G23370.1 35.027 374 218 14 105 461 36 401 2.18e-60 203
Msa0450440 AT4G23390.1 34.223 412 239 15 61 461 7 397 4.37e-59 199
Msa0450440 AT4G23380.1 33.155 374 220 13 104 461 39 398 8.37e-59 199
Msa0450440 AT4G23365.1 32.172 373 226 13 104 461 38 398 1.25e-58 198
Msa0450440 AT4G23350.1 31.536 371 233 12 104 461 38 400 1.57e-58 198
Msa0450440 AT4G23355.1 32.162 370 230 13 104 461 38 398 2.69e-57 195
Msa0450440 AT2G35250.1 34.211 342 195 9 126 463 24 339 1.15e-47 167
Msa0450440 AT4G15050.1 31.854 383 213 17 103 461 36 394 2.20e-44 160
Msa0450440 AT1G10190.1 31.910 398 221 17 90 461 21 394 4.76e-43 157
Msa0450440 AT4G15053.1 31.510 384 216 15 103 461 40 401 5.32e-41 151
Msa0450440 AT4G10220.1 28.806 427 248 18 54 461 9 398 4.51e-39 146
Msa0450440 AT4G17505.1 28.571 357 196 12 117 467 18 321 3.84e-37 139
Msa0450440 AT2G24950.1 29.211 380 224 16 103 461 54 409 4.63e-37 140
Msa0450440 AT2G27320.1 32.881 295 167 11 128 418 30 297 1.56e-36 137
Msa0450440 AT5G46820.1 27.401 354 231 10 120 461 8 347 3.55e-35 134
Msa0450440 AT5G46810.1 27.507 349 227 11 129 461 11 349 8.53e-35 133
Msa0450440 AT4G23373.1 34.025 241 134 9 109 346 40 258 1.31e-33 129
Msa0450440 AT4G10210.1 27.163 416 246 17 54 448 9 388 1.53e-30 122
Msa0450440 AT5G60380.1 27.378 347 224 14 129 466 44 371 3.01e-29 118
Msa0450440 AT5G46200.1 25.691 362 215 11 129 443 31 385 3.73e-29 119
Msa0450440 AT5G25410.1 26.891 357 232 13 113 461 28 363 6.13e-29 117
Msa0450440 AT4G23080.1 27.356 435 256 22 53 463 8 406 1.81e-27 114
Msa0450440 AT5G05030.1 27.100 369 224 18 111 463 20 359 4.77e-27 112
Msa0450440 AT4G17860.1 27.350 351 209 15 129 461 29 351 2.36e-26 110
Msa0450440 AT2G38255.1 31.527 203 116 6 129 330 14 194 3.73e-25 103
Msa0450440 AT5G11660.1 27.304 293 192 9 179 463 25 304 4.31e-24 102
Msa0450440 AT5G25415.1 28.571 252 142 10 232 463 99 332 1.45e-19 90.1
Msa0450440 AT2G03930.2 42.857 105 56 3 218 320 40 142 2.22e-19 85.5
Msa0450440 AT5G36680.1 26.490 302 187 13 179 466 51 331 7.09e-19 87.8
Msa0450440 AT5G36770.1 26.490 302 187 13 179 466 51 331 7.09e-19 87.8
Msa0450440 AT5G37520.1 31.844 179 100 9 293 462 33 198 1.38e-16 78.6
Msa0450440 AT5G04937.1 28.774 212 125 7 257 461 6 198 2.26e-16 78.2

Find 108 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTATCCCTTTGGCCTTTC+TGG 0.032761 3_3:-35866598 None:intergenic
AATTTAGCTTGTCACAAATA+TGG 0.158128 3_3:+35867429 Msa0450440:CDS
TTTGATCATCCTAAGCTTAA+AGG 0.172683 3_3:+35866451 Msa0450440:CDS
ATCCAAGGTTCTTCACTTAT+TGG 0.181219 3_3:+35867641 Msa0450440:CDS
GATTGTGAATGCTCGTTCTA+AGG 0.242059 3_3:+35868792 Msa0450440:CDS
TAAATCCTTCTTCTGCAAAA+TGG 0.251332 3_3:-35868846 None:intergenic
TTGCTATCTTGTTGTTAGTT+TGG 0.257816 3_3:-35867820 None:intergenic
TTTCAGCTGTGGACTGATTC+TGG 0.270068 3_3:+35866649 Msa0450440:CDS
AGCAGGGTAATAACAATGTT+TGG 0.280005 3_3:+35868977 Msa0450440:CDS
AACCGTGGACAGTTTGATAT+TGG 0.280369 3_3:+35867875 Msa0450440:CDS
GAATCTCTCCGTACAGGTTT+TGG 0.285744 3_3:-35866763 None:intergenic
ATGCCTGCCAACCAGCTTCT+AGG 0.287112 3_3:-35867487 None:intergenic
GCAAGTTCTATCAAAAGATT+TGG 0.293382 3_3:+35866733 Msa0450440:CDS
TCTTCTGTTGTTCTTCTGAT+TGG 0.306036 3_3:-35866697 None:intergenic
GCAGGGTAATAACAATGTTT+GGG 0.312146 3_3:+35868978 Msa0450440:CDS
TGCTACAACTTATTGTGTTC+AGG 0.317148 3_3:+35867791 Msa0450440:CDS
ACTAACAACAAGATAGCAAT+AGG 0.320394 3_3:+35867824 Msa0450440:CDS
CTGCTTAATGTTATAACAAT+TGG 0.320834 3_3:-35868959 None:intergenic
TGGGTTATTGCTGGCTCCTT+TGG 0.328974 3_3:+35867449 Msa0450440:CDS
GAAACTTACAAGTCATTGAT+TGG 0.334217 3_3:+35868887 Msa0450440:CDS
TTGATATTGGCATAATGATT+TGG 0.339854 3_3:+35867888 Msa0450440:CDS
GGGCATTTCACATTTCTTCC+AGG 0.340470 3_3:-35869024 None:intergenic
CAAACATGTTTAGTCACTTA+AGG 0.351583 3_3:+35868737 Msa0450440:CDS
TTGATCATCCTAAGCTTAAA+GGG 0.352738 3_3:+35866452 Msa0450440:CDS
CTGATTGGAACAGTTCCTTC+TGG 0.362002 3_3:-35866682 None:intergenic
ATTTAGCTTGTCACAAATAT+GGG 0.364275 3_3:+35867430 Msa0450440:CDS
ATAAGTCTGGTTAGTCTTCA+AGG 0.365189 3_3:-35866042 None:intergenic
GTGAATGGAAATCAATACTT+TGG 0.371387 3_3:+35867356 Msa0450440:CDS
GAGGATTATTAGTTGGATAC+TGG 0.382244 3_3:+35868710 Msa0450440:CDS
CTGAACCTGCTTTATAAGTC+TGG 0.386950 3_3:-35866055 None:intergenic
CATGCAAGCATGGTACAATT+TGG 0.389315 3_3:+35868763 Msa0450440:CDS
CCATTGTTGTAGTATCCCTT+TGG 0.394843 3_3:-35866607 None:intergenic
AACCACCAGTGTCCATGCTT+TGG 0.397011 3_3:-35868679 None:intergenic
GTGTGGTGTGCTACACAATA+TGG 0.403466 3_3:-35865834 None:intergenic
GGTTTATGCCCTTTAAGCTT+AGG 0.407567 3_3:-35866460 None:intergenic
TCACAAATATGGGTTATTGC+TGG 0.414424 3_3:+35867440 Msa0450440:CDS
CCACACATTTATGTTTGCCT+TGG 0.423813 3_3:-35867381 None:intergenic
AAGTGACTAAACATGTTTGC+TGG 0.424031 3_3:-35868733 None:intergenic
TAGTTGTCACCATACAGTTC+TGG 0.435890 3_3:-35867619 None:intergenic
GCCTGAATTGTCTTCACAGC+AGG 0.437481 3_3:-35866128 None:intergenic
TCTTGCTAATATTCATCACT+TGG 0.440337 3_3:+35868927 Msa0450440:CDS
GCCTGCTGTGAAGACAATTC+AGG 0.443029 3_3:+35866127 Msa0450440:CDS
GAGTACGGAGGATTATTAGT+TGG 0.443449 3_3:+35868703 Msa0450440:CDS
CAATCTATCAAATCACCATC+TGG 0.451064 3_3:-35866403 None:intergenic
GGCATTTCACATTTCTTCCA+GGG 0.458404 3_3:-35869023 None:intergenic
TACCCTAGAAGCTGGTTGGC+AGG 0.467303 3_3:+35867484 Msa0450440:CDS
CACGGTTATAAGCTGATGTA+GGG 0.467774 3_3:-35867859 None:intergenic
CTAACAACAAGATAGCAATA+GGG 0.470151 3_3:+35867825 Msa0450440:CDS
AAACTTACAAGTCATTGATT+GGG 0.470160 3_3:+35868888 Msa0450440:CDS
CAATTGTTATAACATTAAGC+AGG 0.472121 3_3:+35868960 Msa0450440:CDS
TTACCACACCGACACTCAAA+TGG 0.474382 3_3:+35868816 Msa0450440:CDS
TATCCCTTTGGCCTTTCTGG+TGG 0.482974 3_3:-35866595 None:intergenic
ATACTACAACAATGGAGAAA+AGG 0.486967 3_3:+35866615 Msa0450440:CDS
ACAGATGCATATCAAACAAC+AGG 0.487444 3_3:+35867767 Msa0450440:CDS
CCAAAGGGATACTACAACAA+TGG 0.490175 3_3:+35866607 Msa0450440:CDS
AGCTTAGGATGATCAAAAGC+TGG 0.492216 3_3:-35866445 None:intergenic
TAAGTCTGGTTAGTCTTCAA+GGG 0.494109 3_3:-35866041 None:intergenic
CCACGGTTATAAGCTGATGT+AGG 0.497933 3_3:-35867860 None:intergenic
TAGAATTAGAATGGAAGCAA+AGG 0.506271 3_3:+35865776 None:intergenic
AAGTGGACAATATGAGAGAA+TGG 0.513503 3_3:-35865902 None:intergenic
CTAGTTGAATCTCTCCGTAC+AGG 0.522071 3_3:-35866769 None:intergenic
ATTGTGAATGCTCGTTCTAA+GGG 0.526045 3_3:+35868793 Msa0450440:CDS
TGCCTGCCAACCAGCTTCTA+GGG 0.526302 3_3:-35867486 None:intergenic
GCCACTTCCCATTTGAGTGT+CGG 0.531546 3_3:-35868824 None:intergenic
GTCCAATAAGTGAAGAACCT+TGG 0.534669 3_3:-35867643 None:intergenic
GCTTAAAGGGCATAAACCAC+TGG 0.535463 3_3:+35866465 Msa0450440:CDS
CAGTTTCCTTGAAAAGACAT+AGG 0.537425 3_3:+35865805 Msa0450440:CDS
GTGGCTAGAATCTGAGACAA+TGG 0.543283 3_3:-35866018 None:intergenic
GATCTGAATACCCTAGAAGC+TGG 0.546882 3_3:+35867476 Msa0450440:CDS
CTTAAGGAGTCATGCAAGCA+TGG 0.548826 3_3:+35868753 Msa0450440:CDS
GCAAGCATGGTACAATTTGG+TGG 0.552322 3_3:+35868766 Msa0450440:CDS
CAGGTAAGTCCAGAACTGTA+TGG 0.555180 3_3:+35867610 Msa0450440:intron
TACCACACCGACACTCAAAT+GGG 0.555983 3_3:+35868817 Msa0450440:CDS
GTTCTATCAAAAGATTTGGA+AGG 0.566425 3_3:+35866737 Msa0450440:CDS
TGAATACCCTAGAAGCTGGT+TGG 0.571037 3_3:+35867480 Msa0450440:CDS
AATTGTTATAACATTAAGCA+GGG 0.572505 3_3:+35868961 Msa0450440:CDS
TATTGGCATAATGATTTGGA+AGG 0.580599 3_3:+35867892 Msa0450440:CDS
AAATCAATACTTTGGAGCCA+AGG 0.583744 3_3:+35867364 Msa0450440:CDS
GATCCACCAGAAAGGCCAAA+GGG 0.583977 3_3:+35866592 Msa0450440:CDS
ACCGACACTCAAATGGGAAG+TGG 0.587290 3_3:+35868823 Msa0450440:CDS
GGACACTGGTGGTTAGAGTA+CGG 0.591126 3_3:+35868688 Msa0450440:CDS
AAGTGATGAATATTAGCAAG+AGG 0.592167 3_3:-35868925 None:intergenic
GAAGGAAACCAAAACCTGTA+CGG 0.593940 3_3:+35866755 Msa0450440:CDS
TAACAACAAGATAGCAATAG+GGG 0.596202 3_3:+35867826 Msa0450440:CDS
TGCCAATATCAAACTGTCCA+CGG 0.597797 3_3:-35867877 None:intergenic
TTCAACTAGCAGTGATCATG+AGG 0.602034 3_3:+35866783 Msa0450440:CDS
CCAAGGCAAACATAAATGTG+TGG 0.602971 3_3:+35867381 Msa0450440:CDS
GTTTACAGGATCCACCAGAA+AGG 0.603971 3_3:+35866584 Msa0450440:intron
ACTAACCAGACTTATAAAGC+AGG 0.607754 3_3:+35866050 Msa0450440:CDS
TGTGAACAGGATCCAAAGCA+TGG 0.614621 3_3:+35868667 Msa0450440:intron
CAAGGCAAACATAAATGTGT+GGG 0.616077 3_3:+35867382 Msa0450440:CDS
TTCCCATTTGAGTGTCGGTG+TGG 0.620291 3_3:-35868819 None:intergenic
TTAATGAGAAGTTTCAGCTG+TGG 0.623212 3_3:+35866638 Msa0450440:CDS
AAGTCTGGTTAGTCTTCAAG+GGG 0.632401 3_3:-35866040 None:intergenic
TGTATGGTGACAACTATCCA+AGG 0.640778 3_3:+35867626 Msa0450440:CDS
TCATATCCATCTGTTACATG+AGG 0.644566 3_3:-35867407 None:intergenic
CAGGGTAATAACAATGTTTG+GGG 0.644781 3_3:+35868979 Msa0450440:CDS
TCTGGTTAGTCTTCAAGGGG+TGG 0.644987 3_3:-35866037 None:intergenic
TGATGAGAGTGAGACAATGC+TGG 0.646817 3_3:-35865993 None:intergenic
GGTATTCAGATCATTACCAA+AGG 0.647857 3_3:-35867465 None:intergenic
AGGATCCAAAGCATGGACAC+TGG 0.649017 3_3:+35868674 Msa0450440:intron
TCTGGTGAAGAATGTCCAGA+AGG 0.650833 3_3:+35866667 Msa0450440:CDS
GGATCCACCAGAAAGGCCAA+AGG 0.651755 3_3:+35866591 Msa0450440:intron
TGGGCACCTCATGTAACAGA+TGG 0.656951 3_3:+35867401 Msa0450440:CDS
ATCCAAAGCATGGACACTGG+TGG 0.664040 3_3:+35868677 Msa0450440:CDS
ACGGTTATAAGCTGATGTAG+GGG 0.689573 3_3:-35867858 None:intergenic
CCTACATCAGCTTATAACCG+TGG 0.701785 3_3:+35867860 Msa0450440:CDS
CACTGGTGGTTAGAGTACGG+AGG 0.713683 3_3:+35868691 Msa0450440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATATTAAAAATAAACAA+TGG - chr3_3:35867586-35867605 None:intergenic 10.0%
!!! TCTGATTTATAAATTTTGTA+TGG - chr3_3:35866514-35866533 None:intergenic 15.0%
!! ATACAAAATTTATAAATCAG+AGG + chr3_3:35866513-35866532 Msa0450440:intron 15.0%
!!! CTTTTTGATATTGAATTTTA+AGG - chr3_3:35866815-35866834 None:intergenic 15.0%
!!! TATTTTTAATATCTTTCTTC+AGG + chr3_3:35867591-35867610 Msa0450440:intron 15.0%
!!! TAAAATAGTAGTTTTATGAT+TGG - chr3_3:35868455-35868474 None:intergenic 15.0%
!!! GATAAATTTTGACAACAATT+TGG + chr3_3:35866897-35866916 Msa0450440:intron 20.0%
!! GTTAATTATGTTGTAAACTA+TGG + chr3_3:35866945-35866964 Msa0450440:intron 20.0%
!!! CTAATTTTTCTTTCATCAAT+AGG + chr3_3:35867035-35867054 Msa0450440:intron 20.0%
!! TTCTAGCAAAAACTAAAAAA+AGG + chr3_3:35867251-35867270 Msa0450440:intron 20.0%
!! TCTAGCAAAAACTAAAAAAA+GGG + chr3_3:35867252-35867271 Msa0450440:intron 20.0%
!! AGATTAATAAGATGCATTTA+AGG - chr3_3:35867313-35867332 None:intergenic 20.0%
!!! AATTTTGCTATGAAATTGAA+AGG - chr3_3:35868037-35868056 None:intergenic 20.0%
!! AATTAGAAAAAGAAACATCA+TGG - chr3_3:35868342-35868361 None:intergenic 20.0%
!! ATTGGAAATATGTGTTAAAA+AGG - chr3_3:35868437-35868456 None:intergenic 20.0%
!! AAATGTAGTAAGATTAATCA+TGG - chr3_3:35868503-35868522 None:intergenic 20.0%
!! TTAAATATTAGTACAATGCA+AGG + chr3_3:35868628-35868647 Msa0450440:intron 20.0%
!! AATTGTTATAACATTAAGCA+GGG + chr3_3:35868961-35868980 Msa0450440:CDS 20.0%
! AACAACAAACAAACAAAAAC+AGG - chr3_3:35865951-35865970 None:intergenic 25.0%
! GTTATTGAAATTATTACCAG+TGG - chr3_3:35866484-35866503 None:intergenic 25.0%
!!! AATTTTGACAACAATTTGGA+TGG + chr3_3:35866901-35866920 Msa0450440:intron 25.0%
! GTTAACGCAATTCAAATATA+TGG + chr3_3:35866923-35866942 Msa0450440:intron 25.0%
! TCATAAATGAATGCACAATT+TGG - chr3_3:35867001-35867020 None:intergenic 25.0%
! AAATTGTGCATTCATTTATG+AGG + chr3_3:35867000-35867019 Msa0450440:intron 25.0%
! AAATCATAAATTACACGAGA+AGG + chr3_3:35867180-35867199 Msa0450440:intron 25.0%
! CTAGAAAAGTTATACATGTT+TGG - chr3_3:35867237-35867256 None:intergenic 25.0%
!!! AATTTAGCTTGTCACAAATA+TGG + chr3_3:35867429-35867448 Msa0450440:CDS 25.0%
!!! ATTTAGCTTGTCACAAATAT+GGG + chr3_3:35867430-35867449 Msa0450440:CDS 25.0%
! TGCATACTAGTGATAATTTA+GGG - chr3_3:35867533-35867552 None:intergenic 25.0%
! TTGCATACTAGTGATAATTT+AGG - chr3_3:35867534-35867553 None:intergenic 25.0%
! TTATCAAATGAAACATGAAG+TGG - chr3_3:35867562-35867581 None:intergenic 25.0%
! AAATTAATGCACAAGAAAAG+AGG - chr3_3:35867723-35867742 None:intergenic 25.0%
! TTGATATTGGCATAATGATT+TGG + chr3_3:35867888-35867907 Msa0450440:CDS 25.0%
! ACTCAATTCAACAATAATCA+AGG + chr3_3:35867932-35867951 Msa0450440:intron 25.0%
!!! TATGCCTTTGTTGAATTTTT+TGG + chr3_3:35868180-35868199 Msa0450440:intron 25.0%
! AAATAAAGTAAACTCCACTA+AGG - chr3_3:35868213-35868232 None:intergenic 25.0%
!!! GCTTTAAAAAAGAAACAGTA+AGG - chr3_3:35868241-35868260 None:intergenic 25.0%
! AAAAGAAACATCATGGTTAT+TGG - chr3_3:35868335-35868354 None:intergenic 25.0%
! TCAACATTCTTTGTAACTAA+TGG - chr3_3:35868376-35868395 None:intergenic 25.0%
! GATTAATCTTACTACATTTG+TGG + chr3_3:35868504-35868523 Msa0450440:intron 25.0%
!! GATATTCCTAAAATGTCTTT+TGG + chr3_3:35868541-35868560 Msa0450440:intron 25.0%
!! AAACTTACAAGTCATTGATT+GGG + chr3_3:35868888-35868907 Msa0450440:CDS 25.0%
! CTGCTTAATGTTATAACAAT+TGG - chr3_3:35868962-35868981 None:intergenic 25.0%
! CAATTGTTATAACATTAAGC+AGG + chr3_3:35868960-35868979 Msa0450440:CDS 25.0%
!!! TGGGGAACTTATTTTTATTA+TGG + chr3_3:35868997-35869016 Msa0450440:CDS 25.0%
!!! GGAACTTATTTTTATTATGG+AGG + chr3_3:35869000-35869019 Msa0450440:CDS 25.0%
! TTCTTTCCTATGTCTTTTCA+AGG - chr3_3:35865814-35865833 None:intergenic 30.0%
!!! CAGGCTTATTGATTTTTTTG+AGG - chr3_3:35866112-35866131 None:intergenic 30.0%
TTACTGACATTGAGTATGTT+TGG + chr3_3:35866186-35866205 Msa0450440:intron 30.0%
! ATTGTTTTCATGAACGATCA+TGG - chr3_3:35866316-35866335 None:intergenic 30.0%
TTTGATCATCCTAAGCTTAA+AGG + chr3_3:35866451-35866470 Msa0450440:CDS 30.0%
TTGATCATCCTAAGCTTAAA+GGG + chr3_3:35866452-35866471 Msa0450440:CDS 30.0%
ATACTACAACAATGGAGAAA+AGG + chr3_3:35866615-35866634 Msa0450440:CDS 30.0%
GCAAGTTCTATCAAAAGATT+TGG + chr3_3:35866733-35866752 Msa0450440:CDS 30.0%
GTTCTATCAAAAGATTTGGA+AGG + chr3_3:35866737-35866756 Msa0450440:CDS 30.0%
! TAGTACTGTTCTTTTCTTTC+TGG - chr3_3:35867088-35867107 None:intergenic 30.0%
! CTTGTACCTACATTGATTAT+TGG + chr3_3:35867208-35867227 Msa0450440:intron 30.0%
! CATGCAATTCTTTTTGTGAA+TGG + chr3_3:35867341-35867360 Msa0450440:CDS 30.0%
GTGAATGGAAATCAATACTT+TGG + chr3_3:35867356-35867375 Msa0450440:CDS 30.0%
TAGGGAAGGGAAAAAATATA+TGG - chr3_3:35867515-35867534 None:intergenic 30.0%
ACTAGTGATAATTTAGGGAA+GGG - chr3_3:35867528-35867547 None:intergenic 30.0%
TACTAGTGATAATTTAGGGA+AGG - chr3_3:35867529-35867548 None:intergenic 30.0%
CAAGAAAAGAGGTTGAAATA+AGG - chr3_3:35867712-35867731 None:intergenic 30.0%
!! TTGCTATCTTGTTGTTAGTT+TGG - chr3_3:35867823-35867842 None:intergenic 30.0%
ACTAACAACAAGATAGCAAT+AGG + chr3_3:35867824-35867843 Msa0450440:CDS 30.0%
CTAACAACAAGATAGCAATA+GGG + chr3_3:35867825-35867844 Msa0450440:CDS 30.0%
TAACAACAAGATAGCAATAG+GGG + chr3_3:35867826-35867845 Msa0450440:CDS 30.0%
! TATTGGCATAATGATTTGGA+AGG + chr3_3:35867892-35867911 Msa0450440:CDS 30.0%
! TTCTTTTTGCTTAACTCACA+AGG + chr3_3:35867976-35867995 Msa0450440:intron 30.0%
AACTCACAAGGCTTATATAA+TGG + chr3_3:35867988-35868007 Msa0450440:intron 30.0%
!!! CTGTTTCTTTTTTAAAGCAG+TGG + chr3_3:35868243-35868262 Msa0450440:intron 30.0%
! TTCACGATTAACTTTTATGC+TGG + chr3_3:35868266-35868285 Msa0450440:intron 30.0%
TATGTGTTAAAAAGGCTTCA+CGG - chr3_3:35868429-35868448 None:intergenic 30.0%
AATCATGGCAAATACACTTA+TGG - chr3_3:35868488-35868507 None:intergenic 30.0%
TAATCTTACTACATTTGTGG+TGG + chr3_3:35868507-35868526 Msa0450440:intron 30.0%
! CATTGACCAAAAGACATTTT+AGG - chr3_3:35868550-35868569 None:intergenic 30.0%
TATTCAACTTTGTCATTGAG+TGG - chr3_3:35868586-35868605 None:intergenic 30.0%
CAAACATGTTTAGTCACTTA+AGG + chr3_3:35868737-35868756 Msa0450440:CDS 30.0%
TAAATCCTTCTTCTGCAAAA+TGG - chr3_3:35868849-35868868 None:intergenic 30.0%
GAAACTTACAAGTCATTGAT+TGG + chr3_3:35868887-35868906 Msa0450440:CDS 30.0%
AAGTGATGAATATTAGCAAG+AGG - chr3_3:35868928-35868947 None:intergenic 30.0%
TCTTGCTAATATTCATCACT+TGG + chr3_3:35868927-35868946 Msa0450440:CDS 30.0%
CAGTTTCCTTGAAAAGACAT+AGG + chr3_3:35865805-35865824 Msa0450440:CDS 35.0%
!!! TATGGTGTTGTCTTTTTGTG+TGG - chr3_3:35865854-35865873 None:intergenic 35.0%
!!! TTGTGTACATGCTTGTTTTG+AGG - chr3_3:35865880-35865899 None:intergenic 35.0%
AAGTGGACAATATGAGAGAA+TGG - chr3_3:35865905-35865924 None:intergenic 35.0%
CAAACAAAAACAGGTAGCAT+AGG - chr3_3:35865942-35865961 None:intergenic 35.0%
!! TAAGTCTGGTTAGTCTTCAA+GGG - chr3_3:35866044-35866063 None:intergenic 35.0%
!! ATAAGTCTGGTTAGTCTTCA+AGG - chr3_3:35866045-35866064 None:intergenic 35.0%
ACTAACCAGACTTATAAAGC+AGG + chr3_3:35866050-35866069 Msa0450440:CDS 35.0%
AATGTCAGTAACAATGTCAC+TGG - chr3_3:35866177-35866196 None:intergenic 35.0%
! ATTTTGTATCAGAGTCCAGA+TGG + chr3_3:35866388-35866407 Msa0450440:intron 35.0%
CAATCTATCAAATCACCATC+TGG - chr3_3:35866406-35866425 None:intergenic 35.0%
TTTGAGAGACAGAAAGTAAG+AGG + chr3_3:35866555-35866574 Msa0450440:intron 35.0%
GACAGAAAGTAAGAGGATTA+AGG + chr3_3:35866562-35866581 Msa0450440:intron 35.0%
GTAAGAGGATTAAGGTTTAC+AGG + chr3_3:35866570-35866589 Msa0450440:intron 35.0%
TTAATGAGAAGTTTCAGCTG+TGG + chr3_3:35866638-35866657 Msa0450440:CDS 35.0%
TCTTCTGTTGTTCTTCTGAT+TGG - chr3_3:35866700-35866719 None:intergenic 35.0%
!! TGTTCTTTTCTTTCTGGCAA+AGG - chr3_3:35867082-35867101 None:intergenic 35.0%
AAGAGACAAACAAACACAAG+TGG - chr3_3:35867137-35867156 None:intergenic 35.0%
TGGCATCCAATAATCAATGT+AGG - chr3_3:35867217-35867236 None:intergenic 35.0%
!! AAATCAATACTTTGGAGCCA+AGG + chr3_3:35867364-35867383 Msa0450440:CDS 35.0%
CAAGGCAAACATAAATGTGT+GGG + chr3_3:35867382-35867401 Msa0450440:CDS 35.0%
TCATATCCATCTGTTACATG+AGG - chr3_3:35867410-35867429 None:intergenic 35.0%
! TCACAAATATGGGTTATTGC+TGG + chr3_3:35867440-35867459 Msa0450440:CDS 35.0%
GGTATTCAGATCATTACCAA+AGG - chr3_3:35867468-35867487 None:intergenic 35.0%
ATCCAAGGTTCTTCACTTAT+TGG + chr3_3:35867641-35867660 Msa0450440:CDS 35.0%
ACAGATGCATATCAAACAAC+AGG + chr3_3:35867767-35867786 Msa0450440:CDS 35.0%
TGCTACAACTTATTGTGTTC+AGG + chr3_3:35867791-35867810 Msa0450440:CDS 35.0%
!!! GCCTTTGTTGAATTTTTTGG+CGG + chr3_3:35868183-35868202 Msa0450440:intron 35.0%
!!! CCTTTGTTGAATTTTTTGGC+GGG + chr3_3:35868184-35868203 Msa0450440:intron 35.0%
!!! CTTTGTTGAATTTTTTGGCG+GGG + chr3_3:35868185-35868204 Msa0450440:intron 35.0%
!!! TTTGTTGAATTTTTTGGCGG+GGG + chr3_3:35868186-35868205 Msa0450440:intron 35.0%
!! TATGCTGGTCTTACTGTATA+TGG + chr3_3:35868281-35868300 Msa0450440:intron 35.0%
GCTGAAAAATCATTGTGAAC+AGG + chr3_3:35868654-35868673 Msa0450440:intron 35.0%
GAGGATTATTAGTTGGATAC+TGG + chr3_3:35868710-35868729 Msa0450440:CDS 35.0%
AAGTGACTAAACATGTTTGC+TGG - chr3_3:35868736-35868755 None:intergenic 35.0%
ATTGTGAATGCTCGTTCTAA+GGG + chr3_3:35868793-35868812 Msa0450440:CDS 35.0%
AGCAGGGTAATAACAATGTT+TGG + chr3_3:35868977-35868996 Msa0450440:CDS 35.0%
GCAGGGTAATAACAATGTTT+GGG + chr3_3:35868978-35868997 Msa0450440:CDS 35.0%
CAGGGTAATAACAATGTTTG+GGG + chr3_3:35868979-35868998 Msa0450440:CDS 35.0%
!! TATTTTTATTATGGAGGCCC+TGG + chr3_3:35869006-35869025 Msa0450440:CDS 35.0%
!!! ATGCTTGTTTTGAGGCAGTA+TGG - chr3_3:35865872-35865891 None:intergenic 40.0%
ACAAAAACAGGTAGCATAGG+TGG - chr3_3:35865939-35865958 None:intergenic 40.0%
!! AAGTCTGGTTAGTCTTCAAG+GGG - chr3_3:35866043-35866062 None:intergenic 40.0%
CTGAACCTGCTTTATAAGTC+TGG - chr3_3:35866058-35866077 None:intergenic 40.0%
AGCTTAGGATGATCAAAAGC+TGG - chr3_3:35866448-35866467 None:intergenic 40.0%
GGTTTATGCCCTTTAAGCTT+AGG - chr3_3:35866463-35866482 None:intergenic 40.0%
CCATTGTTGTAGTATCCCTT+TGG - chr3_3:35866610-35866629 None:intergenic 40.0%
CCAAAGGGATACTACAACAA+TGG + chr3_3:35866607-35866626 Msa0450440:CDS 40.0%
GAAGGAAACCAAAACCTGTA+CGG + chr3_3:35866755-35866774 Msa0450440:CDS 40.0%
TTCAACTAGCAGTGATCATG+AGG + chr3_3:35866783-35866802 Msa0450440:CDS 40.0%
! TCTTTCTGGCAAAGGAATGT+GGG - chr3_3:35867074-35867093 None:intergenic 40.0%
! TTCTTTCTGGCAAAGGAATG+TGG - chr3_3:35867075-35867094 None:intergenic 40.0%
ACTACCTTAACAGACAGTGA+AGG + chr3_3:35867104-35867123 Msa0450440:intron 40.0%
CTACCTTAACAGACAGTGAA+GGG + chr3_3:35867105-35867124 Msa0450440:intron 40.0%
CCACACATTTATGTTTGCCT+TGG - chr3_3:35867384-35867403 None:intergenic 40.0%
CCAAGGCAAACATAAATGTG+TGG + chr3_3:35867381-35867400 Msa0450440:CDS 40.0%
TAGTTGTCACCATACAGTTC+TGG - chr3_3:35867622-35867641 None:intergenic 40.0%
TGTATGGTGACAACTATCCA+AGG + chr3_3:35867626-35867645 Msa0450440:CDS 40.0%
GTCCAATAAGTGAAGAACCT+TGG - chr3_3:35867646-35867665 None:intergenic 40.0%
ACGGTTATAAGCTGATGTAG+GGG - chr3_3:35867861-35867880 None:intergenic 40.0%
CACGGTTATAAGCTGATGTA+GGG - chr3_3:35867862-35867881 None:intergenic 40.0%
AACCGTGGACAGTTTGATAT+TGG + chr3_3:35867875-35867894 Msa0450440:CDS 40.0%
TGCCAATATCAAACTGTCCA+CGG - chr3_3:35867880-35867899 None:intergenic 40.0%
CCCGCCAAAAAATTCAACAA+AGG - chr3_3:35868187-35868206 None:intergenic 40.0%
ACTACATTTGTGGTGGTTGT+TGG + chr3_3:35868514-35868533 Msa0450440:intron 40.0%
GAGTACGGAGGATTATTAGT+TGG + chr3_3:35868703-35868722 Msa0450440:CDS 40.0%
CATGCAAGCATGGTACAATT+TGG + chr3_3:35868763-35868782 Msa0450440:CDS 40.0%
GATTGTGAATGCTCGTTCTA+AGG + chr3_3:35868792-35868811 Msa0450440:CDS 40.0%
GGCATTTCACATTTCTTCCA+GGG - chr3_3:35869026-35869045 None:intergenic 40.0%
GTGTGGTGTGCTACACAATA+TGG - chr3_3:35865837-35865856 None:intergenic 45.0%
!!! AGGTGGAGTGTTTTGAGAAG+TGG - chr3_3:35865922-35865941 None:intergenic 45.0%
TGATGAGAGTGAGACAATGC+TGG - chr3_3:35865996-35866015 None:intergenic 45.0%
! GTGGCTAGAATCTGAGACAA+TGG - chr3_3:35866021-35866040 None:intergenic 45.0%
! GCTTAAAGGGCATAAACCAC+TGG + chr3_3:35866465-35866484 Msa0450440:CDS 45.0%
GTTTACAGGATCCACCAGAA+AGG + chr3_3:35866584-35866603 Msa0450440:intron 45.0%
! TAGTATCCCTTTGGCCTTTC+TGG - chr3_3:35866601-35866620 None:intergenic 45.0%
! TTTCAGCTGTGGACTGATTC+TGG + chr3_3:35866649-35866668 Msa0450440:CDS 45.0%
TCTGGTGAAGAATGTCCAGA+AGG + chr3_3:35866667-35866686 Msa0450440:CDS 45.0%
CTGATTGGAACAGTTCCTTC+TGG - chr3_3:35866685-35866704 None:intergenic 45.0%
! GAATCTCTCCGTACAGGTTT+TGG - chr3_3:35866766-35866785 None:intergenic 45.0%
CTAGTTGAATCTCTCCGTAC+AGG - chr3_3:35866772-35866791 None:intergenic 45.0%
! CTTTCTGGCAAAGGAATGTG+GGG - chr3_3:35867073-35867092 None:intergenic 45.0%
TGTCCCTTCACTGTCTGTTA+AGG - chr3_3:35867111-35867130 None:intergenic 45.0%
GATCTGAATACCCTAGAAGC+TGG + chr3_3:35867476-35867495 Msa0450440:CDS 45.0%
TGAATACCCTAGAAGCTGGT+TGG + chr3_3:35867480-35867499 Msa0450440:CDS 45.0%
CAGGTAAGTCCAGAACTGTA+TGG + chr3_3:35867610-35867629 Msa0450440:intron 45.0%
CCACGGTTATAAGCTGATGT+AGG - chr3_3:35867863-35867882 None:intergenic 45.0%
CCTACATCAGCTTATAACCG+TGG + chr3_3:35867860-35867879 Msa0450440:CDS 45.0%
ATTTGTGGTGGTTGTTGGTG+TGG + chr3_3:35868519-35868538 Msa0450440:intron 45.0%
! TTTGGTCAATGTGTCGCTAG+TGG + chr3_3:35868559-35868578 Msa0450440:intron 45.0%
TGTGAACAGGATCCAAAGCA+TGG + chr3_3:35868667-35868686 Msa0450440:intron 45.0%
CTTAAGGAGTCATGCAAGCA+TGG + chr3_3:35868753-35868772 Msa0450440:CDS 45.0%
GCAAGCATGGTACAATTTGG+TGG + chr3_3:35868766-35868785 Msa0450440:CDS 45.0%
TTACCACACCGACACTCAAA+TGG + chr3_3:35868816-35868835 Msa0450440:CDS 45.0%
TACCACACCGACACTCAAAT+GGG + chr3_3:35868817-35868836 Msa0450440:CDS 45.0%
!! AGTGGCCATTTTGCAGAAGA+AGG + chr3_3:35868841-35868860 Msa0450440:CDS 45.0%
GGGCATTTCACATTTCTTCC+AGG - chr3_3:35869027-35869046 None:intergenic 45.0%
!! AATATTAATATAACATAAAA+AGG - chr3_3:35868139-35868158 None:intergenic 5.0%
!! TCTGGTTAGTCTTCAAGGGG+TGG - chr3_3:35866040-35866059 None:intergenic 50.0%
GCCTGCTGTGAAGACAATTC+AGG + chr3_3:35866127-35866146 Msa0450440:CDS 50.0%
GCCTGAATTGTCTTCACAGC+AGG - chr3_3:35866131-35866150 None:intergenic 50.0%
GATCCACCAGAAAGGCCAAA+GGG + chr3_3:35866592-35866611 Msa0450440:CDS 50.0%
! TATCCCTTTGGCCTTTCTGG+TGG - chr3_3:35866598-35866617 None:intergenic 50.0%
TGGGCACCTCATGTAACAGA+TGG + chr3_3:35867401-35867420 Msa0450440:CDS 50.0%
!! TGGGTTATTGCTGGCTCCTT+TGG + chr3_3:35867449-35867468 Msa0450440:CDS 50.0%
AGGATCCAAAGCATGGACAC+TGG + chr3_3:35868674-35868693 Msa0450440:intron 50.0%
ATCCAAAGCATGGACACTGG+TGG + chr3_3:35868677-35868696 Msa0450440:CDS 50.0%
AACCACCAGTGTCCATGCTT+TGG - chr3_3:35868682-35868701 None:intergenic 50.0%
GGACACTGGTGGTTAGAGTA+CGG + chr3_3:35868688-35868707 Msa0450440:CDS 50.0%
!! TTCCCATTTGAGTGTCGGTG+TGG - chr3_3:35868822-35868841 None:intergenic 50.0%
ACCGACACTCAAATGGGAAG+TGG + chr3_3:35868823-35868842 Msa0450440:CDS 50.0%
GCCACTTCCCATTTGAGTGT+CGG - chr3_3:35868827-35868846 None:intergenic 50.0%
GGATCCACCAGAAAGGCCAA+AGG + chr3_3:35866591-35866610 Msa0450440:intron 55.0%
TACCCTAGAAGCTGGTTGGC+AGG + chr3_3:35867484-35867503 Msa0450440:CDS 55.0%
TGCCTGCCAACCAGCTTCTA+GGG - chr3_3:35867489-35867508 None:intergenic 55.0%
ATGCCTGCCAACCAGCTTCT+AGG - chr3_3:35867490-35867509 None:intergenic 55.0%
!! TTTTTGGCGGGGGACCTTAG+TGG + chr3_3:35868196-35868215 Msa0450440:intron 55.0%
CACTGGTGGTTAGAGTACGG+AGG + chr3_3:35868691-35868710 Msa0450440:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 35865786 35869050 35865786 ID=Msa0450440;Name=Msa0450440
chr3_3 mRNA 35865786 35869050 35865786 ID=Msa0450440-mRNA-1;Parent=Msa0450440;Name=Msa0450440-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0|0|1|1|1|7|0|467
chr3_3 exon 35865786 35866148 35865786 ID=Msa0450440-mRNA-1:exon:6513;Parent=Msa0450440-mRNA-1
chr3_3 exon 35866400 35866486 35866400 ID=Msa0450440-mRNA-1:exon:6514;Parent=Msa0450440-mRNA-1
chr3_3 exon 35866592 35866804 35866592 ID=Msa0450440-mRNA-1:exon:6515;Parent=Msa0450440-mRNA-1
chr3_3 exon 35867341 35867505 35867341 ID=Msa0450440-mRNA-1:exon:6516;Parent=Msa0450440-mRNA-1
chr3_3 exon 35867613 35867666 35867613 ID=Msa0450440-mRNA-1:exon:6517;Parent=Msa0450440-mRNA-1
chr3_3 exon 35867767 35867913 35867767 ID=Msa0450440-mRNA-1:exon:6518;Parent=Msa0450440-mRNA-1
chr3_3 exon 35868676 35869050 35868676 ID=Msa0450440-mRNA-1:exon:6519;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35865786 35866148 35865786 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35866400 35866486 35866400 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35866592 35866804 35866592 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35867341 35867505 35867341 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35867613 35867666 35867613 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35867767 35867913 35867767 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
chr3_3 CDS 35868676 35869050 35868676 ID=Msa0450440-mRNA-1:cds;Parent=Msa0450440-mRNA-1
Gene Sequence

>Msa0450440

ATGGAAGCAAAGGAATACTCAGTTTCCTTGAAAAGACATAGGAAAGAACCATATTGTGTAGCACACCACACAAAAAGACAACACCATACTGCCTCAAAACAAGCATGTACACAAAACCATTCTCTCATATTGTCCACTTCTCAAAACACTCCACCTATGCTACCTGTTTTTGTTTGTTTGTTGTTACTTCTTCTTACTTCAACTACACCAGCATTGTCTCACTCTCATCACTCCATTGTCTCAGATTCTAGCCACCCCTTGAAGACTAACCAGACTTATAAAGCAGGTTCAGAGTTGCTTAAGTTAATAAGAATCAGAACTCACCTCAAAAAAATCAATAAGCCTGCTGTGAAGACAATTCAGAGTCCAGATGGTGATTTGATAGATTGTGTTTTATCTCATCAACAACCAGCTTTTGATCATCCTAAGCTTAAAGGGCATAAACCACTGGATCCACCAGAAAGGCCAAAGGGATACTACAACAATGGAGAAAAGGTTAATGAGAAGTTTCAGCTGTGGACTGATTCTGGTGAAGAATGTCCAGAAGGAACTGTTCCAATCAGAAGAACAACAGAAGATGATATTCTAAGAGCAAGTTCTATCAAAAGATTTGGAAGGAAACCAAAACCTGTACGGAGAGATTCAACTAGCAGTGATCATGAGCATGCAATTCTTTTTGTGAATGGAAATCAATACTTTGGAGCCAAGGCAAACATAAATGTGTGGGCACCTCATGTAACAGATGGATATGAATTTAGCTTGTCACAAATATGGGTTATTGCTGGCTCCTTTGGTAATGATCTGAATACCCTAGAAGCTGGTTGGCAGGTAAGTCCAGAACTGTATGGTGACAACTATCCAAGGTTCTTCACTTATTGGACTACAGATGCATATCAAACAACAGGATGCTACAACTTATTGTGTTCAGGCTTTATCCAAACTAACAACAAGATAGCAATAGGGGCAACAATCTCCCCTACATCAGCTTATAACCGTGGACAGTTTGATATTGGCATAATGATTTGGAAGGATCCAAAGCATGGACACTGGTGGTTAGAGTACGGAGGATTATTAGTTGGATACTGGCCAGCAAACATGTTTAGTCACTTAAGGAGTCATGCAAGCATGGTACAATTTGGTGGAGAGATTGTGAATGCTCGTTCTAAGGGTTACCACACCGACACTCAAATGGGAAGTGGCCATTTTGCAGAAGAAGGATTTAAAAAAGCAGCTTATTTTAGAAACTTACAAGTCATTGATTGGGACAATAACTTACTTCCTCTTGCTAATATTCATCACTTGGCTGATCATTCCAATTGTTATAACATTAAGCAGGGTAATAACAATGTTTGGGGAACTTATTTTTATTATGGAGGCCCTGGAAGAAATGTGAAATGCCCATGA
Protein sequence

>Msa0450440

MEAKEYSVSLKRHRKEPYCVAHHTKRQHHTASKQACTQNHSLILSTSQNTPPMLPVFVCLLLLLLTSTTPALSHSHHSIVSDSSHPLKTNQTYKAGSELLKLIRIRTHLKKINKPAVKTIQSPDGDLIDCVLSHQQPAFDHPKLKGHKPLDPPERPKGYYNNGEKVNEKFQLWTDSGEECPEGTVPIRRTTEDDILRASSIKRFGRKPKPVRRDSTSSDHEHAILFVNGNQYFGAKANINVWAPHVTDGYEFSLSQIWVIAGSFGNDLNTLEAGWQVSPELYGDNYPRFFTYWTTDAYQTTGCYNLLCSGFIQTNNKIAIGATISPTSAYNRGQFDIGIMIWKDPKHGHWWLEYGGLLVGYWPANMFSHLRSHASMVQFGGEIVNARSKGYHTDTQMGSGHFAEEGFKKAAYFRNLQVIDWDNNLLPLANIHHLADHSNCYNIKQGNNNVWGTYFYYGGPGRNVKCP*