Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425990 | XP_003607234.2 | 95.093 | 591 | 27 | 1 | 35 | 625 | 1 | 589 | 0.0 | 1153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425990 | sp|Q8W4I6|BPG2_ARATH | 49.130 | 460 | 221 | 4 | 158 | 614 | 210 | 659 | 9.11e-142 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425990 | G7JNJ0 | 95.093 | 591 | 27 | 1 | 35 | 625 | 1 | 589 | 0.0 | 1153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1425990 | Msa1450720 | 0.825083 | 5.686824e-54 | -8.615850e-47 |
| Msa0705390 | Msa1425990 | 0.800212 | 1.602009e-48 | -8.615850e-47 |
| Msa0719420 | Msa1425990 | 0.807935 | 3.964049e-50 | -8.615850e-47 |
| Msa0789680 | Msa1425990 | 0.806055 | 9.904537e-50 | -8.615850e-47 |
| Msa0802410 | Msa1425990 | 0.807154 | 5.806910e-50 | -8.615850e-47 |
| Msa0805500 | Msa1425990 | 0.804725 | 1.882291e-49 | -8.615850e-47 |
| Msa0127040 | Msa1425990 | 0.830728 | 2.493808e-55 | -8.615850e-47 |
| Msa0193600 | Msa1425990 | 0.810318 | 1.223273e-50 | -8.615850e-47 |
| Msa0458640 | Msa1425990 | 0.814662 | 1.374264e-51 | -8.615850e-47 |
| Msa0980940 | Msa1425990 | 0.808075 | 3.701735e-50 | -8.615850e-47 |
| Msa0273650 | Msa1425990 | 0.811950 | 5.417355e-51 | -8.615850e-47 |
| Msa1119200 | Msa1425990 | 0.805285 | 1.437251e-49 | -8.615850e-47 |
| Msa1158230 | Msa1425990 | 0.811333 | 7.376489e-51 | -8.615850e-47 |
| Msa1174100 | Msa1425990 | 0.805163 | 1.523979e-49 | -8.615850e-47 |
| Msa0514180 | Msa1425990 | 0.803187 | 3.928798e-49 | -8.615850e-47 |
| Msa0888940 | Msa1425990 | 0.807806 | 4.221590e-50 | -8.615850e-47 |
| Msa0930140 | Msa1425990 | 0.803298 | 3.726631e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425990 | MtrunA17_Chr4g0038081 | 95.093 | 591 | 27 | 1 | 35 | 625 | 1 | 589 | 0.0 | 1153 |
| Msa1425990 | MtrunA17_Chr7g0256861 | 52.000 | 425 | 200 | 2 | 193 | 615 | 206 | 628 | 8.57e-148 | 441 |
| Msa1425990 | MtrunA17_Chr4g0020791 | 24.934 | 377 | 233 | 10 | 194 | 541 | 125 | 480 | 2.14e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425990 | AT4G10620.1 | 62.479 | 589 | 195 | 8 | 37 | 614 | 5 | 578 | 0.0 | 732 |
| Msa1425990 | AT3G47450.2 | 22.807 | 456 | 260 | 13 | 116 | 541 | 101 | 494 | 1.00e-22 | 102 |
| Msa1425990 | AT3G47450.1 | 22.807 | 456 | 260 | 13 | 116 | 541 | 101 | 494 | 1.68e-22 | 102 |
Find 193 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAACCGAGAACCATTT+TGG | 0.133984 | tig0025935:+14761 | Msa1425990:intergenic |
| ATGAAATAACCAGGGTGTTT+TGG | 0.205059 | tig0025935:+17131 | Msa1425990:intergenic |
| TGGTTTGCCATTGGACTTAA+AGG | 0.240701 | tig0025935:-15311 | Msa1425990:CDS |
| GATTTATTTCTTGAGGTCTT+TGG | 0.250822 | tig0025935:-17519 | Msa1425990:CDS |
| AATTAACTTTGCACCCAAAA+TGG | 0.260198 | tig0025935:-14775 | Msa1425990:three_prime_UTR |
| AAAATGTTCCAAGACCATTT+TGG | 0.269151 | tig0025935:-15931 | Msa1425990:CDS |
| ATTTATGTCTAGGAAATTAT+TGG | 0.276286 | tig0025935:+14956 | Msa1425990:intergenic |
| GAGTCAAAGAATTGGGAAAT+TGG | 0.292283 | tig0025935:-15409 | Msa1425990:CDS |
| TTCAAAAGTATTTGATCTAT+AGG | 0.306049 | tig0025935:+15223 | Msa1425990:intergenic |
| TCCTTATCTTCCTCTGCATA+TGG | 0.313023 | tig0025935:-15974 | Msa1425990:CDS |
| TTCATGTCTGCCCTGGTTGT+GGG | 0.318895 | tig0025935:-17175 | Msa1425990:CDS |
| TCAAAAGTATTTGATCTATA+GGG | 0.332371 | tig0025935:+15224 | Msa1425990:intergenic |
| ACCTAGGACATATAGAATTA+AGG | 0.335455 | tig0025935:-16229 | Msa1425990:intron |
| GACCCGTTCAGTGGTGCTTA+TGG | 0.342344 | tig0025935:-16823 | Msa1425990:CDS |
| TCATACAGTGGGAAGGAAAT+TGG | 0.344940 | tig0025935:-16859 | Msa1425990:CDS |
| TTTAACTGTCTTAGAGAATT+CGG | 0.345667 | tig0025935:+17043 | Msa1425990:intergenic |
| GGCCTTGGTTGGTTTGCCAT+TGG | 0.349702 | tig0025935:-15320 | Msa1425990:CDS |
| TTGACTCTTTCCTCTCCAAT+TGG | 0.353881 | tig0025935:+15425 | Msa1425990:intergenic |
| TGTCATTCGTTGAGACACTA+TGG | 0.356382 | tig0025935:-16933 | Msa1425990:CDS |
| AGAGGAAAGAGTCAAAGAAT+TGG | 0.361793 | tig0025935:-15417 | Msa1425990:CDS |
| TACCTAATCAAATTACTTGA+TGG | 0.365892 | tig0025935:+17272 | Msa1425990:intergenic |
| CTTCATGTCTGCCCTGGTTG+TGG | 0.365977 | tig0025935:-17176 | Msa1425990:CDS |
| GACATTGTTGCTGCTGGCCT+TGG | 0.366467 | tig0025935:-15335 | Msa1425990:CDS |
| CATAGCTGGTCTTATGAGAT+TGG | 0.371902 | tig0025935:-16046 | Msa1425990:CDS |
| TAAATAAGTATTTAAATCTC+TGG | 0.376254 | tig0025935:+17480 | Msa1425990:intergenic |
| AGTCAAAGAATTGGGAAATT+GGG | 0.381368 | tig0025935:-15408 | Msa1425990:CDS |
| TCCTAGGAAGGTTGCGAACT+TGG | 0.383551 | tig0025935:-16769 | Msa1425990:CDS |
| AGAAGGGAATTTCATGTTAG+TGG | 0.384998 | tig0025935:-15383 | Msa1425990:CDS |
| CTCATTGTCACCAACAAGAT+TGG | 0.394296 | tig0025935:-16643 | Msa1425990:CDS |
| CACCAACAAGATTGGAGCAT+TGG | 0.395292 | tig0025935:-16635 | Msa1425990:CDS |
| ACGTCAACAAAGTGGCAAAA+AGG | 0.395607 | tig0025935:-15141 | Msa1425990:CDS |
| TGTGGAAGATATAGTTCAAT+TGG | 0.395692 | tig0025935:-16523 | Msa1425990:CDS |
| CTGACAGAAGCACCTGTTCC+AGG | 0.395996 | tig0025935:-16399 | Msa1425990:CDS |
| ATCCATCAAGTAATTTGATT+AGG | 0.398183 | tig0025935:-17274 | Msa1425990:CDS |
| TCATCAACCTTGTTGTAATC+TGG | 0.398584 | tig0025935:+16292 | Msa1425990:intergenic |
| GGTGAGTGCGCTTAGAGATT+GGG | 0.398653 | tig0025935:-16559 | Msa1425990:CDS |
| AGGGAGAGAAGGAGAACTTC+GGG | 0.400193 | tig0025935:+17986 | Msa1425990:intergenic |
| CAATCTCTTCATGTCTGCCC+TGG | 0.406089 | tig0025935:-17182 | Msa1425990:CDS |
| GAGGGAATGTATGGACTGTT+GGG | 0.406707 | tig0025935:-16491 | Msa1425990:CDS |
| CACTACTCTAGGCACGTTCC+CGG | 0.406789 | tig0025935:+16698 | Msa1425990:intergenic |
| AATTCGGACTCTTGAGCAAC+AGG | 0.411487 | tig0025935:+17059 | Msa1425990:intergenic |
| TGTCCTAGGTTTCAATTCCT+TGG | 0.421113 | tig0025935:+16242 | Msa1425990:intergenic |
| TCCATTGTTCAGCCACCAAT+TGG | 0.424573 | tig0025935:-15440 | Msa1425990:intron |
| GTATGATCAAAGTCAAAATC+TGG | 0.428135 | tig0025935:+16876 | Msa1425990:intergenic |
| GAGGAAAGAGTCAAAGAATT+GGG | 0.429386 | tig0025935:-15416 | Msa1425990:CDS |
| CAGGGCAGACATGAAGAGAT+TGG | 0.429388 | tig0025935:+17183 | Msa1425990:intergenic |
| ATCCAATGCTCCAATCTTGT+TGG | 0.431663 | tig0025935:+16633 | Msa1425990:intergenic |
| TCAAAGAGACTACCTGTAAC+TGG | 0.432720 | tig0025935:+15905 | Msa1425990:intergenic |
| TGGAGATAGGGGTTTGCGTC+TGG | 0.434672 | tig0025935:+17320 | Msa1425990:intergenic |
| TTATACGACGAAACACCTTT+CGG | 0.434982 | tig0025935:-17587 | Msa1425990:five_prime_UTR |
| GCATGGAAGCAAGGTAAGTC+CGG | 0.436612 | tig0025935:-16717 | Msa1425990:CDS |
| ACTCTTTCCTCTCCAATTGG+TGG | 0.441889 | tig0025935:+15428 | Msa1425990:intergenic |
| AACCATAAGCACCACTGAAC+GGG | 0.444472 | tig0025935:+16821 | Msa1425990:intergenic |
| TCACCTCTGTTGGCTTCTGA+TGG | 0.444973 | tig0025935:-15077 | Msa1425990:CDS |
| TCTGTAGACATTGTTGCTGC+TGG | 0.448620 | tig0025935:-15341 | Msa1425990:CDS |
| AGTACATTAATAAATTCTAT+AGG | 0.448697 | tig0025935:-16450 | Msa1425990:CDS |
| GGAGGGTGCTCTTCCAAGTC+AGG | 0.449831 | tig0025935:-16352 | Msa1425990:CDS |
| ATTGGGAAATTGGGTGAGAA+GGG | 0.449928 | tig0025935:-15399 | Msa1425990:CDS |
| CTCAGTTGAATCACCTCTGT+TGG | 0.450669 | tig0025935:-15087 | Msa1425990:CDS |
| TTTGCACCCAAAATGGTTCT+CGG | 0.451115 | tig0025935:-14768 | Msa1425990:three_prime_UTR |
| TTCAGTGGTGCTTATGGTTG+TGG | 0.453742 | tig0025935:-16817 | Msa1425990:CDS |
| ACAAGCGGCTTAAGCTTTGA+AGG | 0.455410 | tig0025935:+17407 | Msa1425990:intergenic |
| CCTGTAACTGGTGTCCAAAA+TGG | 0.456140 | tig0025935:+15917 | Msa1425990:intergenic |
| TTTGTAAGGCTATGGAGATA+GGG | 0.456281 | tig0025935:+17308 | Msa1425990:intergenic |
| TGGTGAGTGCGCTTAGAGAT+TGG | 0.456549 | tig0025935:-16560 | Msa1425990:CDS |
| ATAATTACCCTCACGAGATA+AGG | 0.457092 | tig0025935:+17220 | Msa1425990:intergenic |
| ACCTTAATTCTATATGTCCT+AGG | 0.457345 | tig0025935:+16228 | Msa1425990:intergenic |
| GGGGTTTGCGTCTGGTGTTA+AGG | 0.459030 | tig0025935:+17328 | Msa1425990:intergenic |
| AGAGGGAATGTATGGACTGT+TGG | 0.463799 | tig0025935:-16492 | Msa1425990:CDS |
| TAATTACCCTCACGAGATAA+GGG | 0.466373 | tig0025935:+17221 | Msa1425990:intergenic |
| ACCAAGTTCGCAACCTTCCT+AGG | 0.468175 | tig0025935:+16768 | Msa1425990:intergenic |
| GTAGTGATGACAACTTGTTC+AGG | 0.470321 | tig0025935:-16986 | Msa1425990:CDS |
| CCGAGTGTAGTCCCTGGAAC+AGG | 0.472246 | tig0025935:+16387 | Msa1425990:intergenic |
| AAATACTTATTTAGATTTCG+AGG | 0.475308 | tig0025935:-17470 | Msa1425990:CDS |
| TTCCTAGACATAAATATCTC+AGG | 0.475457 | tig0025935:-14948 | Msa1425990:three_prime_UTR |
| CTGGATCTAGAGGGAATGTA+TGG | 0.478048 | tig0025935:-16500 | Msa1425990:CDS |
| AGGAAATTGGCATCAGCAAG+TGG | 0.479557 | tig0025935:-16846 | Msa1425990:CDS |
| TGATGGGTCGTTTCCTAGGA+AGG | 0.484048 | tig0025935:-16781 | Msa1425990:CDS |
| TCATGTTAGTGGAAACAGTT+GGG | 0.484745 | tig0025935:-15372 | Msa1425990:CDS |
| CCCATATGCAGAGGAAGATA+AGG | 0.486651 | tig0025935:+15973 | Msa1425990:intergenic |
| CCTTATCTTCCTCTGCATAT+GGG | 0.488326 | tig0025935:-15973 | Msa1425990:CDS |
| TGTGGTGGATTTATTTCTTG+AGG | 0.488940 | tig0025935:-17526 | Msa1425990:CDS |
| TTGTTGCTGCTGGCCTTGGT+TGG | 0.490050 | tig0025935:-15331 | Msa1425990:CDS |
| AGGTCTCAGGTTCAAGCAAT+GGG | 0.492198 | tig0025935:-14928 | Msa1425990:three_prime_UTR |
| GGCTTCTCCTTTAAGTCCAA+TGG | 0.498859 | tig0025935:+15304 | Msa1425990:intergenic |
| ACATAAATATCTCAGGTCTC+AGG | 0.499397 | tig0025935:-14941 | Msa1425990:three_prime_UTR |
| ATTGACTCAAAATCGCTATC+CGG | 0.499622 | tig0025935:-15110 | Msa1425990:CDS |
| ATCAGTTGGAAGAAAGCAAA+AGG | 0.502223 | tig0025935:-15037 | Msa1425990:three_prime_UTR |
| ACTGGTGTCCAAAATGGTCT+TGG | 0.506526 | tig0025935:+15923 | Msa1425990:intergenic |
| GTATGCTGAGAAGTTGTGTA+TGG | 0.509423 | tig0025935:-17552 | Msa1425990:exon |
| AGGGCAGACATGAAGAGATT+GGG | 0.510680 | tig0025935:+17184 | Msa1425990:intergenic |
| AACCTTGTTGTAATCTGGTA+AGG | 0.512336 | tig0025935:+16297 | Msa1425990:intergenic |
| ATAAGTCCATGCACTCAATA+CGG | 0.514141 | tig0025935:+15283 | Msa1425990:intergenic |
| CGTGAGGGTAATTATGATGA+AGG | 0.514918 | tig0025935:-17212 | Msa1425990:CDS |
| CCTCTGTTGGCTTCTGATGG+AGG | 0.515240 | tig0025935:-15074 | Msa1425990:CDS |
| TTGTAAGGCTATGGAGATAG+GGG | 0.515578 | tig0025935:+17309 | Msa1425990:intergenic |
| CTTGAGCAACAGGTTCAAGA+TGG | 0.520290 | tig0025935:+17069 | Msa1425990:intergenic |
| TACGTTACATCCTTCTCAGA+TGG | 0.522371 | tig0025935:+17104 | Msa1425990:intergenic |
| TTTCATTAAACCATCTGAGA+AGG | 0.523877 | tig0025935:-17114 | Msa1425990:CDS |
| TGGTAAGGATGGAGAAGGCC+AGG | 0.525078 | tig0025935:+16312 | Msa1425990:intergenic |
| AATTGGGAAATTGGGTGAGA+AGG | 0.525399 | tig0025935:-15400 | Msa1425990:CDS |
| GTGAGTGCGCTTAGAGATTG+GGG | 0.525476 | tig0025935:-16558 | Msa1425990:CDS |
| GAGGGAGAGAAGGAGAACTT+CGG | 0.526046 | tig0025935:+17985 | Msa1425990:intergenic |
| GAAGATATAGTTCAATTGGC+TGG | 0.526895 | tig0025935:-16519 | Msa1425990:CDS |
| TCATGTCTGCCCTGGTTGTG+GGG | 0.529290 | tig0025935:-17174 | Msa1425990:CDS |
| TGCATACAAACCCCACAACC+AGG | 0.530519 | tig0025935:+17164 | Msa1425990:intergenic |
| CAGGTCTCAGGTTCAAGCAA+TGG | 0.531978 | tig0025935:-14929 | Msa1425990:three_prime_UTR |
| ATCAAATTACTTGATGGATG+TGG | 0.534587 | tig0025935:+17278 | Msa1425990:intergenic |
| CAGAGGTGATTCAACTGAGC+CGG | 0.537137 | tig0025935:+15091 | Msa1425990:intergenic |
| TATTAGTACGACGGCGGCGG+CGG | 0.538600 | tig0025935:+17940 | Msa1425990:intergenic |
| GGTCATTCGATTCACATAGC+TGG | 0.541885 | tig0025935:-16060 | Msa1425990:CDS |
| GACCTGAGATATTTATGTCT+AGG | 0.543170 | tig0025935:+14946 | Msa1425990:intergenic |
| CCGTGACATAGATAGTATCC+AGG | 0.543433 | tig0025935:+16007 | Msa1425990:intergenic |
| GATTAGACAAAGAGCTAGAG+AGG | 0.546646 | tig0025935:-16613 | Msa1425990:CDS |
| CTCGGCATTGTTAGAGTGGA+GGG | 0.549772 | tig0025935:-16369 | Msa1425990:CDS |
| TTGAGTGCATGGACTTATGA+AGG | 0.550342 | tig0025935:-15278 | Msa1425990:CDS |
| AACTATACAGCATGGAAGCA+AGG | 0.551471 | tig0025935:-16726 | Msa1425990:CDS |
| CGCTTCTCTATATCTCGCCA+AGG | 0.551674 | tig0025935:-17902 | Msa1425990:five_prime_UTR |
| CTTGTTGGTGACAATGAGCT+AGG | 0.551765 | tig0025935:+16648 | Msa1425990:intergenic |
| ACTGTTGGGGCACAGAATGC+AGG | 0.551950 | tig0025935:-16477 | Msa1425990:CDS |
| TTGTTGTAATCTGGTAAGGA+TGG | 0.555091 | tig0025935:+16301 | Msa1425990:intergenic |
| TGAACAATAAAATGAAGCCT+TGG | 0.555592 | tig0025935:+17885 | Msa1425990:intergenic |
| TCTATAGGAAAGCATGTTGG+AGG | 0.556783 | tig0025935:-16435 | Msa1425990:CDS |
| CATGTGATAATGATATCAGT+TGG | 0.558824 | tig0025935:-15051 | Msa1425990:exon |
| GTTCAATTGGCTGGATCTAG+AGG | 0.560206 | tig0025935:-16510 | Msa1425990:CDS |
| GAGAAGCCGTATTGAGTGCA+TGG | 0.560590 | tig0025935:-15289 | Msa1425990:CDS |
| CAAGCGGCTTAAGCTTTGAA+GGG | 0.561678 | tig0025935:+17408 | Msa1425990:intergenic |
| TGACAGAAGCACCTGTTCCA+GGG | 0.562846 | tig0025935:-16398 | Msa1425990:CDS |
| TTCATGTTAGTGGAAACAGT+TGG | 0.567966 | tig0025935:-15373 | Msa1425990:CDS |
| TACTATCTATGTCACGGTGT+GGG | 0.568649 | tig0025935:-16001 | Msa1425990:CDS |
| TACACTCGGCATTGTTAGAG+TGG | 0.569706 | tig0025935:-16373 | Msa1425990:CDS |
| CATGGAAGCAAGGTAAGTCC+GGG | 0.572930 | tig0025935:-16716 | Msa1425990:CDS |
| TCAGAAGATATGATTGTGGA+GGG | 0.575667 | tig0025935:-17611 | Msa1425990:intron |
| TTTGACTTTGATCATACAGT+GGG | 0.577171 | tig0025935:-16870 | Msa1425990:CDS |
| ATCAGAAGATATGATTGTGG+AGG | 0.582112 | tig0025935:-17612 | Msa1425990:intron |
| GATGGTTTAATGAAATAACC+AGG | 0.582295 | tig0025935:+17122 | Msa1425990:intergenic |
| AAAATTGCCCTTATCTCGTG+AGG | 0.583492 | tig0025935:-17228 | Msa1425990:CDS |
| GTAACCACAAGCACTACTCT+AGG | 0.583678 | tig0025935:+16687 | Msa1425990:intergenic |
| CTGTGAGACAATATTCGATA+CGG | 0.583710 | tig0025935:+15187 | Msa1425990:intergenic |
| AGATATTAGTACGACGGCGG+CGG | 0.587617 | tig0025935:+17937 | Msa1425990:intergenic |
| GCTTATGGTTGTGGATGCAG+TGG | 0.587943 | tig0025935:-16808 | Msa1425990:CDS |
| ACTTTGATCATACAGTGGGA+AGG | 0.589214 | tig0025935:-16866 | Msa1425990:CDS |
| TTGAGCAACAGGTTCAAGAT+GGG | 0.594552 | tig0025935:+17070 | Msa1425990:intergenic |
| TGACAGCGTGCACATACCAC+TGG | 0.600690 | tig0025935:+16951 | Msa1425990:intergenic |
| GGATGTAGAAGAAACGTCCC+TGG | 0.600737 | tig0025935:-16025 | Msa1425990:CDS |
| AGATTACAACAAGGTTGATG+AGG | 0.600932 | tig0025935:-16290 | Msa1425990:CDS |
| CAACCATAAGCACCACTGAA+CGG | 0.604372 | tig0025935:+16820 | Msa1425990:intergenic |
| AAGCGGCTTAAGCTTTGAAG+GGG | 0.606453 | tig0025935:+17409 | Msa1425990:intergenic |
| AGCAAGTGGGACCCGTTCAG+TGG | 0.608237 | tig0025935:-16832 | Msa1425990:CDS |
| AGACAAAGAGCTAGAGAGGG+TGG | 0.609226 | tig0025935:-16609 | Msa1425990:CDS |
| ACAATGCCGAGTGTAGTCCC+TGG | 0.609637 | tig0025935:+16381 | Msa1425990:intergenic |
| AATTCTATAGGAAAGCATGT+TGG | 0.612736 | tig0025935:-16438 | Msa1425990:CDS |
| GCAAAATTATTTGATACACC+TGG | 0.614797 | tig0025935:-16330 | Msa1425990:CDS |
| TTAATCAGAAGATATGATTG+TGG | 0.616291 | tig0025935:-17615 | Msa1425990:intron |
| GTCATTCGTTGAGACACTAT+GGG | 0.618421 | tig0025935:-16932 | Msa1425990:CDS |
| TGACCAAGGAATTGAAACCT+AGG | 0.619641 | tig0025935:-16245 | Msa1425990:CDS |
| AATAAGCCACGTCAACAAAG+TGG | 0.620148 | tig0025935:-15149 | Msa1425990:CDS |
| CCTGGATACTATCTATGTCA+CGG | 0.623115 | tig0025935:-16007 | Msa1425990:CDS |
| GATTACAACAAGGTTGATGA+GGG | 0.623303 | tig0025935:-16289 | Msa1425990:CDS |
| TAATCTGGTAAGGATGGAGA+AGG | 0.624051 | tig0025935:+16307 | Msa1425990:intergenic |
| TGAGTGCGCTTAGAGATTGG+GGG | 0.624349 | tig0025935:-16557 | Msa1425990:CDS |
| TTGAAGATAACTATACAGCA+TGG | 0.629073 | tig0025935:-16734 | Msa1425990:CDS |
| TACGAAAATTAGTTGCCGAA+AGG | 0.629750 | tig0025935:+17572 | Msa1425990:intergenic |
| TTCAATTGGCTGGATCTAGA+GGG | 0.631258 | tig0025935:-16509 | Msa1425990:CDS |
| TGTTCAGCCACCAATTGGAG+AGG | 0.632813 | tig0025935:-15435 | Msa1425990:intron |
| ACTCGGCATTGTTAGAGTGG+AGG | 0.634469 | tig0025935:-16370 | Msa1425990:CDS |
| CTATAGGAAAGCATGTTGGA+GGG | 0.635689 | tig0025935:-16434 | Msa1425990:CDS |
| CCTGTTCCAGGGACTACACT+CGG | 0.641401 | tig0025935:-16387 | Msa1425990:CDS |
| AGGAGTGATAAATAAACAAG+CGG | 0.641430 | tig0025935:+17392 | Msa1425990:intergenic |
| AAAGCTTGTTTACATGACCA+AGG | 0.642945 | tig0025935:-16259 | Msa1425990:CDS |
| CGTGCCTAGAGTAGTGCTTG+TGG | 0.643699 | tig0025935:-16691 | Msa1425990:CDS |
| AGGGAATGTATGGACTGTTG+GGG | 0.644602 | tig0025935:-16490 | Msa1425990:CDS |
| TAAGATTACTAGTTTGCACA+TGG | 0.649783 | tig0025935:-16580 | Msa1425990:CDS |
| GGAAATTGGCATCAGCAAGT+GGG | 0.650890 | tig0025935:-16845 | Msa1425990:CDS |
| GAGACACTATGGGAAGGTGA+AGG | 0.651918 | tig0025935:-16922 | Msa1425990:CDS |
| GTCCAATGGCAAACCAACCA+AGG | 0.653164 | tig0025935:+15318 | Msa1425990:intergenic |
| TTCGTTGAGACACTATGGGA+AGG | 0.659597 | tig0025935:-16928 | Msa1425990:CDS |
| AGAAGTTGTGTATGGAACTG+TGG | 0.666045 | tig0025935:-17544 | Msa1425990:exon |
| AAATTGCCCTTATCTCGTGA+GGG | 0.666235 | tig0025935:-17227 | Msa1425990:CDS |
| GATTCCAGCCCAAAACACCC+TGG | 0.667674 | tig0025935:-17140 | Msa1425990:CDS |
| CTTGGCGAGATATAGAGAAG+CGG | 0.669014 | tig0025935:+17903 | Msa1425990:intergenic |
| CGTGACATAGATAGTATCCA+GGG | 0.673194 | tig0025935:+16008 | Msa1425990:intergenic |
| ATACTATCTATGTCACGGTG+TGG | 0.673404 | tig0025935:-16002 | Msa1425990:CDS |
| GCATACAAACCCCACAACCA+GGG | 0.677618 | tig0025935:+17165 | Msa1425990:intergenic |
| ATGGTTTAATGAAATAACCA+GGG | 0.678574 | tig0025935:+17123 | Msa1425990:intergenic |
| ATTAGACAAAGAGCTAGAGA+GGG | 0.680916 | tig0025935:-16612 | Msa1425990:CDS |
| AGTTGTGTATGGAACTGTGG+TGG | 0.686795 | tig0025935:-17541 | Msa1425990:exon |
| CCTCCATCAGAAGCCAACAG+AGG | 0.709094 | tig0025935:+15074 | Msa1425990:intergenic |
| ATCCTTACCAGATTACAACA+AGG | 0.715471 | tig0025935:-16299 | Msa1425990:CDS |
| CAGGAAACCAGAAAAGCCAG+TGG | 0.720203 | tig0025935:-16967 | Msa1425990:CDS |
| AGAGCGAGATATTAGTACGA+CGG | 0.729574 | tig0025935:+17931 | Msa1425990:intergenic |
| GAAGGTGAAGGATCCAACTG+TGG | 0.739686 | tig0025935:-16910 | Msa1425990:CDS |
| GCGAGATATTAGTACGACGG+CGG | 0.772603 | tig0025935:+17934 | Msa1425980:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAGTATTTAAATCTC+TGG | + | tig0025935:15291-15310 | Msa1425990:intergenic | 15.0% |
| !! | AGTACATTAATAAATTCTAT+AGG | - | tig0025935:16318-16337 | Msa1425990:CDS | 15.0% |
| !! | AAATACTTATTTAGATTTCG+AGG | - | tig0025935:15298-15317 | Msa1425990:CDS | 20.0% |
| !! | AAAAAATGCTACTAAAGATT+TGG | + | tig0025935:17059-17078 | Msa1425990:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTGATTCAT+AGG | - | tig0025935:17253-17272 | Msa1425990:CDS | 20.0% |
| !!! | TCAAAAGTATTTGATCTATA+GGG | + | tig0025935:17547-17566 | Msa1425990:intergenic | 20.0% |
| !!! | TTCAAAAGTATTTGATCTAT+AGG | + | tig0025935:17548-17567 | Msa1425990:intergenic | 20.0% |
| !! | ATTTATGTCTAGGAAATTAT+TGG | + | tig0025935:17815-17834 | Msa1425990:intergenic | 20.0% |
| !! | GAGTTGTCAAAAAAAAAATT+AGG | - | tig0025935:17921-17940 | Msa1425990:five_prime_UTR | 20.0% |
| ! | TTAATCAGAAGATATGATTG+TGG | - | tig0025935:15153-15172 | Msa1425990:CDS | 25.0% |
| !!! | GTAAATTTTTTGTAAGGCTA+TGG | + | tig0025935:15471-15490 | Msa1425990:intergenic | 25.0% |
| !!! | GATGTGGTAAATTTTTTGTA+AGG | + | tig0025935:15477-15496 | Msa1425990:intergenic | 25.0% |
| ! | ATCCATCAAGTAATTTGATT+AGG | - | tig0025935:15494-15513 | Msa1425990:intron | 25.0% |
| ! | TACCTAATCAAATTACTTGA+TGG | + | tig0025935:15499-15518 | Msa1425990:intergenic | 25.0% |
| ! | ATGGTTTAATGAAATAACCA+GGG | + | tig0025935:15648-15667 | Msa1425990:intergenic | 25.0% |
| ! | TTTAACTGTCTTAGAGAATT+CGG | + | tig0025935:15728-15747 | Msa1425990:intergenic | 25.0% |
| !!! | TTCTCTAAGACAGTTAAAAA+AGG | - | tig0025935:15730-15749 | Msa1425990:intron | 25.0% |
| !!! | TCTCTAAGACAGTTAAAAAA+GGG | - | tig0025935:15731-15750 | Msa1425990:intron | 25.0% |
| !! | TTTTACCAATTAATTGTCGT+AGG | - | tig0025935:16683-16702 | Msa1425990:CDS | 25.0% |
| !! | ACAGTGAAGTTTTTATTCAT+TGG | - | tig0025935:17193-17212 | Msa1425990:CDS | 25.0% |
| !!! | TCAAATACTTTTGAAGTTAC+AGG | - | tig0025935:17553-17572 | Msa1425990:exon | 25.0% |
| !!! | GTGATTTTGTTTTTGTGAGA+GGG | + | tig0025935:14804-14823 | Msa0036440:intergenic | 30.0% |
| TGAACAATAAAATGAAGCCT+TGG | + | tig0025935:14886-14905 | Msa1425990:intergenic | 30.0% | |
| ! | AGGCTTCATTTTATTGTTCA+AGG | - | tig0025935:14886-14905 | Msa1425990:intron | 30.0% |
| ATAGATAGAGAATCGTACAT+TGG | - | tig0025935:15017-15036 | Msa1425990:three_prime_UTR | 30.0% | |
| ! | GATTTATTTCTTGAGGTCTT+TGG | - | tig0025935:15249-15268 | Msa1425990:CDS | 30.0% |
| AGGAGTGATAAATAAACAAG+CGG | + | tig0025935:15379-15398 | Msa1425990:intergenic | 30.0% | |
| ! | ATCAAATTACTTGATGGATG+TGG | + | tig0025935:15493-15512 | Msa1425990:intergenic | 30.0% |
| !! | GATAAGGGCAATTTTTGTTT+TGG | + | tig0025935:15535-15554 | Msa1425990:intergenic | 30.0% |
| GATGGTTTAATGAAATAACC+AGG | + | tig0025935:15649-15668 | Msa1425990:intergenic | 30.0% | |
| TTTCATTAAACCATCTGAGA+AGG | - | tig0025935:15654-15673 | Msa1425990:intron | 30.0% | |
| GTATGATCAAAGTCAAAATC+TGG | + | tig0025935:15895-15914 | Msa1425990:intergenic | 30.0% | |
| !!! | TTTTGACTTTGATCATACAG+TGG | - | tig0025935:15897-15916 | Msa1425990:intron | 30.0% |
| ! | TTTGACTTTGATCATACAGT+GGG | - | tig0025935:15898-15917 | Msa1425990:intron | 30.0% |
| TTGAAGATAACTATACAGCA+TGG | - | tig0025935:16034-16053 | Msa1425990:CDS | 30.0% | |
| ! | TAAGATTACTAGTTTGCACA+TGG | - | tig0025935:16188-16207 | Msa1425990:intron | 30.0% |
| TGTGGAAGATATAGTTCAAT+TGG | - | tig0025935:16245-16264 | Msa1425990:CDS | 30.0% | |
| ! | AATTCTATAGGAAAGCATGT+TGG | - | tig0025935:16330-16349 | Msa1425990:CDS | 30.0% |
| ! | TCAAATAATTTTGCCTGACT+TGG | + | tig0025935:16432-16451 | Msa1425990:intergenic | 30.0% |
| GCAAAATTATTTGATACACC+TGG | - | tig0025935:16438-16457 | Msa1425990:CDS | 30.0% | |
| ACCTAGGACATATAGAATTA+AGG | - | tig0025935:16539-16558 | Msa1425990:CDS | 30.0% | |
| ACCTTAATTCTATATGTCCT+AGG | + | tig0025935:16543-16562 | Msa1425990:intergenic | 30.0% | |
| ! | AAAATGTTCCAAGACCATTT+TGG | - | tig0025935:16837-16856 | Msa1425990:CDS | 30.0% |
| GAAAATCAGCTTATAAGCAT+GGG | + | tig0025935:16924-16943 | Msa1425990:intergenic | 30.0% | |
| TGAAAATCAGCTTATAAGCA+TGG | + | tig0025935:16925-16944 | Msa1425990:intergenic | 30.0% | |
| TGTAACCTAGACAAAACTAA+AGG | + | tig0025935:16956-16975 | Msa1425990:intergenic | 30.0% | |
| !!! | GGTACACACTTTTTTTAGTT+GGG | + | tig0025935:17009-17028 | Msa1425990:intergenic | 30.0% |
| !!! | TGGTACACACTTTTTTTAGT+TGG | + | tig0025935:17010-17029 | Msa1425990:intergenic | 30.0% |
| TCACTGTAGTAAGCATATTA+TGG | + | tig0025935:17157-17176 | Msa1425990:intergenic | 30.0% | |
| AGTCAAAGAATTGGGAAATT+GGG | - | tig0025935:17360-17379 | Msa1425990:CDS | 30.0% | |
| ! | CATGTGATAATGATATCAGT+TGG | - | tig0025935:17717-17736 | Msa1425990:intron | 30.0% |
| TTCCTAGACATAAATATCTC+AGG | - | tig0025935:17820-17839 | Msa1425990:intron | 30.0% | |
| !!! | TGACACATCTTTTTTAGCAA+TGG | - | tig0025935:17868-17887 | Msa1425990:intron | 30.0% |
| !!! | GACACATCTTTTTTAGCAAT+GGG | - | tig0025935:17869-17888 | Msa1425990:intron | 30.0% |
| AATTAACTTTGCACCCAAAA+TGG | - | tig0025935:17993-18012 | Msa1425990:five_prime_UTR | 30.0% | |
| !!! | CGTGATTTTGTTTTTGTGAG+AGG | + | tig0025935:14805-14824 | Msa0036440:intergenic | 35.0% |
| CTCACAAAAACAAAATCACG+CGG | - | tig0025935:14805-14824 | Msa1425990:three_prime_UTR | 35.0% | |
| TTCGAGAAAGATAGACTTCA+AGG | - | tig0025935:14924-14943 | Msa1425990:three_prime_UTR | 35.0% | |
| ATCAGAAGATATGATTGTGG+AGG | - | tig0025935:15156-15175 | Msa1425990:CDS | 35.0% | |
| TCAGAAGATATGATTGTGGA+GGG | - | tig0025935:15157-15176 | Msa1425990:CDS | 35.0% | |
| TTATACGACGAAACACCTTT+CGG | - | tig0025935:15181-15200 | Msa1425990:CDS | 35.0% | |
| TACGAAAATTAGTTGCCGAA+AGG | + | tig0025935:15199-15218 | Msa1425990:intergenic | 35.0% | |
| !! | TGTGGTGGATTTATTTCTTG+AGG | - | tig0025935:15242-15261 | Msa1425990:CDS | 35.0% |
| TAAAAAGATTCGACTGCACA+TGG | + | tig0025935:15417-15436 | Msa1425990:intergenic | 35.0% | |
| TTTGTAAGGCTATGGAGATA+GGG | + | tig0025935:15463-15482 | Msa1425990:intergenic | 35.0% | |
| ! | TTTTGTAAGGCTATGGAGAT+AGG | + | tig0025935:15464-15483 | Msa1425990:intergenic | 35.0% |
| TAATTACCCTCACGAGATAA+GGG | + | tig0025935:15550-15569 | Msa1425990:intergenic | 35.0% | |
| ATAATTACCCTCACGAGATA+AGG | + | tig0025935:15551-15570 | Msa1425990:intergenic | 35.0% | |
| !! | TGAAATAACCAGGGTGTTTT+GGG | + | tig0025935:15639-15658 | Msa1425990:intergenic | 35.0% |
| !! | ATGAAATAACCAGGGTGTTT+TGG | + | tig0025935:15640-15659 | Msa1425990:intergenic | 35.0% |
| ! | TCACTACTACTAAGCTTTTC+TGG | + | tig0025935:15769-15788 | Msa1425990:intergenic | 35.0% |
| ATTAGACAAAGAGCTAGAGA+GGG | - | tig0025935:16156-16175 | Msa1425990:intron | 35.0% | |
| GAAGATATAGTTCAATTGGC+TGG | - | tig0025935:16249-16268 | Msa1425990:CDS | 35.0% | |
| TTGTTGTAATCTGGTAAGGA+TGG | + | tig0025935:16470-16489 | Msa1425990:intergenic | 35.0% | |
| ATCCTTACCAGATTACAACA+AGG | - | tig0025935:16469-16488 | Msa1425990:CDS | 35.0% | |
| ! | AACCTTGTTGTAATCTGGTA+AGG | + | tig0025935:16474-16493 | Msa1425990:intergenic | 35.0% |
| ! | TCATCAACCTTGTTGTAATC+TGG | + | tig0025935:16479-16498 | Msa1425990:intergenic | 35.0% |
| !! | AGATTACAACAAGGTTGATG+AGG | - | tig0025935:16478-16497 | Msa1425990:CDS | 35.0% |
| !! | GATTACAACAAGGTTGATGA+GGG | - | tig0025935:16479-16498 | Msa1425990:CDS | 35.0% |
| ! | AAAGCTTGTTTACATGACCA+AGG | - | tig0025935:16509-16528 | Msa1425990:CDS | 35.0% |
| ! | TCTATTTTACCCATATGCAG+AGG | + | tig0025935:16807-16826 | Msa1425990:intergenic | 35.0% |
| !!! | GTGTTCCTTTAGTTTTGTCT+AGG | - | tig0025935:16948-16967 | Msa1425990:CDS | 35.0% |
| GAACAATGGAAAATTCAGAC+TGG | + | tig0025935:17318-17337 | Msa1425990:intergenic | 35.0% | |
| AGAGGAAAGAGTCAAAGAAT+TGG | - | tig0025935:17351-17370 | Msa1425990:CDS | 35.0% | |
| GAGGAAAGAGTCAAAGAATT+GGG | - | tig0025935:17352-17371 | Msa1425990:CDS | 35.0% | |
| GAGTCAAAGAATTGGGAAAT+TGG | - | tig0025935:17359-17378 | Msa1425990:CDS | 35.0% | |
| AGAAGGGAATTTCATGTTAG+TGG | - | tig0025935:17385-17404 | Msa1425990:CDS | 35.0% | |
| TTCATGTTAGTGGAAACAGT+TGG | - | tig0025935:17395-17414 | Msa1425990:CDS | 35.0% | |
| TCATGTTAGTGGAAACAGTT+GGG | - | tig0025935:17396-17415 | Msa1425990:CDS | 35.0% | |
| ATAAGTCCATGCACTCAATA+CGG | + | tig0025935:17488-17507 | Msa1425990:intergenic | 35.0% | |
| CTGTGAGACAATATTCGATA+CGG | + | tig0025935:17584-17603 | Msa1425990:intergenic | 35.0% | |
| ! | ATTGACTCAAAATCGCTATC+CGG | - | tig0025935:17658-17677 | Msa1425990:intron | 35.0% |
| ATCAGTTGGAAGAAAGCAAA+AGG | - | tig0025935:17731-17750 | Msa1425990:intron | 35.0% | |
| GACCTGAGATATTTATGTCT+AGG | + | tig0025935:17825-17844 | Msa1425990:intergenic | 35.0% | |
| ACATAAATATCTCAGGTCTC+AGG | - | tig0025935:17827-17846 | Msa1425990:intron | 35.0% | |
| ! | TTGTAGTGTGTTTTCTGAGT+TGG | - | tig0025935:17950-17969 | Msa1425990:five_prime_UTR | 35.0% |
| AGAGCGAGATATTAGTACGA+CGG | + | tig0025935:14840-14859 | Msa1425990:intergenic | 40.0% | |
| GATAGAGAATCGTACATTGG+AGG | - | tig0025935:15020-15039 | Msa1425990:three_prime_UTR | 40.0% | |
| GTATGCTGAGAAGTTGTGTA+TGG | - | tig0025935:15216-15235 | Msa1425990:CDS | 40.0% | |
| AGAAGTTGTGTATGGAACTG+TGG | - | tig0025935:15224-15243 | Msa1425990:CDS | 40.0% | |
| ! | CATGGCTTTTGCAATCAGAA+AGG | + | tig0025935:15399-15418 | Msa1425990:intergenic | 40.0% |
| TTGTAAGGCTATGGAGATAG+GGG | + | tig0025935:15462-15481 | Msa1425990:intergenic | 40.0% | |
| AAAATTGCCCTTATCTCGTG+AGG | - | tig0025935:15540-15559 | Msa1425990:intron | 40.0% | |
| AAATTGCCCTTATCTCGTGA+GGG | - | tig0025935:15541-15560 | Msa1425990:intron | 40.0% | |
| CGTGAGGGTAATTATGATGA+AGG | - | tig0025935:15556-15575 | Msa1425990:intron | 40.0% | |
| TACGTTACATCCTTCTCAGA+TGG | + | tig0025935:15667-15686 | Msa1425990:intergenic | 40.0% | |
| TTGAGCAACAGGTTCAAGAT+GGG | + | tig0025935:15701-15720 | Msa1425990:intergenic | 40.0% | |
| ! | GTAGTGATGACAACTTGTTC+AGG | - | tig0025935:15782-15801 | Msa1425990:intron | 40.0% |
| TGTCATTCGTTGAGACACTA+TGG | - | tig0025935:15835-15854 | Msa1425990:intron | 40.0% | |
| GTCATTCGTTGAGACACTAT+GGG | - | tig0025935:15836-15855 | Msa1425990:intron | 40.0% | |
| ACTTTGATCATACAGTGGGA+AGG | - | tig0025935:15902-15921 | Msa1425990:intron | 40.0% | |
| TCATACAGTGGGAAGGAAAT+TGG | - | tig0025935:15909-15928 | Msa1425990:intron | 40.0% | |
| !! | TGGATGCAGTGGATTTTGAT+GGG | - | tig0025935:15971-15990 | Msa1425990:CDS | 40.0% |
| !! | ATTTTGATGGGTCGTTTCCT+AGG | - | tig0025935:15983-16002 | Msa1425990:CDS | 40.0% |
| AACTATACAGCATGGAAGCA+AGG | - | tig0025935:16042-16061 | Msa1425990:CDS | 40.0% | |
| CTCATTGTCACCAACAAGAT+TGG | - | tig0025935:16125-16144 | Msa1425990:intron | 40.0% | |
| ATCCAATGCTCCAATCTTGT+TGG | + | tig0025935:16138-16157 | Msa1425990:intergenic | 40.0% | |
| GATTAGACAAAGAGCTAGAG+AGG | - | tig0025935:16155-16174 | Msa1425990:intron | 40.0% | |
| TTCAATTGGCTGGATCTAGA+GGG | - | tig0025935:16259-16278 | Msa1425990:CDS | 40.0% | |
| ! | TCTATAGGAAAGCATGTTGG+AGG | - | tig0025935:16333-16352 | Msa1425990:CDS | 40.0% |
| ! | CTATAGGAAAGCATGTTGGA+GGG | - | tig0025935:16334-16353 | Msa1425990:CDS | 40.0% |
| TAATCTGGTAAGGATGGAGA+AGG | + | tig0025935:16464-16483 | Msa1425990:intergenic | 40.0% | |
| TGACCAAGGAATTGAAACCT+AGG | - | tig0025935:16523-16542 | Msa1425990:CDS | 40.0% | |
| TGTCCTAGGTTTCAATTCCT+TGG | + | tig0025935:16529-16548 | Msa1425990:intergenic | 40.0% | |
| ACCAATTAATTGTCGTAGGC+TGG | - | tig0025935:16687-16706 | Msa1425990:CDS | 40.0% | |
| ACCAGCCTACGACAATTAAT+TGG | + | tig0025935:16691-16710 | Msa1425990:intergenic | 40.0% | |
| !! | CATAGCTGGTCTTATGAGAT+TGG | - | tig0025935:16722-16741 | Msa1425990:CDS | 40.0% |
| CGTGACATAGATAGTATCCA+GGG | + | tig0025935:16763-16782 | Msa1425990:intergenic | 40.0% | |
| CCTGGATACTATCTATGTCA+CGG | - | tig0025935:16761-16780 | Msa1425990:CDS | 40.0% | |
| ATACTATCTATGTCACGGTG+TGG | - | tig0025935:16766-16785 | Msa1425990:CDS | 40.0% | |
| TACTATCTATGTCACGGTGT+GGG | - | tig0025935:16767-16786 | Msa1425990:CDS | 40.0% | |
| TCCTTATCTTCCTCTGCATA+TGG | - | tig0025935:16794-16813 | Msa1425990:CDS | 40.0% | |
| CCTTATCTTCCTCTGCATAT+GGG | - | tig0025935:16795-16814 | Msa1425990:CDS | 40.0% | |
| TCAAAGAGACTACCTGTAAC+TGG | + | tig0025935:16866-16885 | Msa1425990:intergenic | 40.0% | |
| TGCTACTAAAGATTTGGACC+AGG | + | tig0025935:17053-17072 | Msa1425990:intergenic | 40.0% | |
| !! | TCAGACTGGTGTTATACAAG+AGG | + | tig0025935:17304-17323 | Msa1425990:intergenic | 40.0% |
| TTGACTCTTTCCTCTCCAAT+TGG | + | tig0025935:17346-17365 | Msa1425990:intergenic | 40.0% | |
| AATTGGGAAATTGGGTGAGA+AGG | - | tig0025935:17368-17387 | Msa1425990:CDS | 40.0% | |
| ATTGGGAAATTGGGTGAGAA+GGG | - | tig0025935:17369-17388 | Msa1425990:CDS | 40.0% | |
| ! | TGGTTTGCCATTGGACTTAA+AGG | - | tig0025935:17457-17476 | Msa1425990:CDS | 40.0% |
| TTGAGTGCATGGACTTATGA+AGG | - | tig0025935:17490-17509 | Msa1425990:CDS | 40.0% | |
| AATAAGCCACGTCAACAAAG+TGG | - | tig0025935:17619-17638 | Msa1425990:intron | 40.0% | |
| !!! | TTTTTGCCACTTTGTTGACG+TGG | + | tig0025935:17628-17647 | Msa1425990:intergenic | 40.0% |
| ACGTCAACAAAGTGGCAAAA+AGG | - | tig0025935:17627-17646 | Msa1425990:intron | 40.0% | |
| !!! | GTTTTCTGAGTTGGTTGAAG+TGG | - | tig0025935:17959-17978 | Msa1425990:five_prime_UTR | 40.0% |
| TTTGCACCCAAAATGGTTCT+CGG | - | tig0025935:18000-18019 | Msa1425990:five_prime_UTR | 40.0% | |
| ! | TCTCAACCGAGAACCATTTT+GGG | + | tig0025935:18009-18028 | Msa1425990:intergenic | 40.0% |
| ! | ATCTCAACCGAGAACCATTT+TGG | + | tig0025935:18010-18029 | Msa1425990:intergenic | 40.0% |
| ! | GTTTTTGTGAGAGGGAGAGA+AGG | + | tig0025935:14796-14815 | Msa0036440:intergenic | 45.0% |
| CTTGGCGAGATATAGAGAAG+CGG | + | tig0025935:14868-14887 | Msa1425990:intergenic | 45.0% | |
| AGTTGTGTATGGAACTGTGG+TGG | - | tig0025935:15227-15246 | Msa1425990:CDS | 45.0% | |
| !! | AAGCGGCTTAAGCTTTGAAG+GGG | + | tig0025935:15362-15381 | Msa1425990:intergenic | 45.0% |
| !! | CAAGCGGCTTAAGCTTTGAA+GGG | + | tig0025935:15363-15382 | Msa1425990:intergenic | 45.0% |
| ! | ACAAGCGGCTTAAGCTTTGA+AGG | + | tig0025935:15364-15383 | Msa1425990:intergenic | 45.0% |
| AGGGCAGACATGAAGAGATT+GGG | + | tig0025935:15587-15606 | Msa1425990:intergenic | 45.0% | |
| CTTGAGCAACAGGTTCAAGA+TGG | + | tig0025935:15702-15721 | Msa1425990:intergenic | 45.0% | |
| AATTCGGACTCTTGAGCAAC+AGG | + | tig0025935:15712-15731 | Msa1425990:intergenic | 45.0% | |
| TTCGTTGAGACACTATGGGA+AGG | - | tig0025935:15840-15859 | Msa1425990:intron | 45.0% | |
| ! | GGTAGCAAGTTTTCCACAGT+TGG | + | tig0025935:15874-15893 | Msa1425990:intergenic | 45.0% |
| AGGAAATTGGCATCAGCAAG+TGG | - | tig0025935:15922-15941 | Msa1425990:CDS | 45.0% | |
| GGAAATTGGCATCAGCAAGT+GGG | - | tig0025935:15923-15942 | Msa1425990:CDS | 45.0% | |
| AACCATAAGCACCACTGAAC+GGG | + | tig0025935:15950-15969 | Msa1425990:intergenic | 45.0% | |
| CAACCATAAGCACCACTGAA+CGG | + | tig0025935:15951-15970 | Msa1425990:intergenic | 45.0% | |
| TTCAGTGGTGCTTATGGTTG+TGG | - | tig0025935:15951-15970 | Msa1425990:CDS | 45.0% | |
| !! | GTGGATGCAGTGGATTTTGA+TGG | - | tig0025935:15970-15989 | Msa1425990:CDS | 45.0% |
| GTAACCACAAGCACTACTCT+AGG | + | tig0025935:16084-16103 | Msa1425990:intergenic | 45.0% | |
| !! | CTTGTTGGTGACAATGAGCT+AGG | + | tig0025935:16123-16142 | Msa1425990:intergenic | 45.0% |
| CACCAACAAGATTGGAGCAT+TGG | - | tig0025935:16133-16152 | Msa1425990:intron | 45.0% | |
| TTGGGGGCTTAAGAATCTTG+TGG | - | tig0025935:16227-16246 | Msa1425990:intron | 45.0% | |
| GTTCAATTGGCTGGATCTAG+AGG | - | tig0025935:16258-16277 | Msa1425990:CDS | 45.0% | |
| CTGGATCTAGAGGGAATGTA+TGG | - | tig0025935:16268-16287 | Msa1425990:CDS | 45.0% | |
| ! | AGAGGGAATGTATGGACTGT+TGG | - | tig0025935:16276-16295 | Msa1425990:CDS | 45.0% |
| ! | GAGGGAATGTATGGACTGTT+GGG | - | tig0025935:16277-16296 | Msa1425990:CDS | 45.0% |
| ! | AGGGAATGTATGGACTGTTG+GGG | - | tig0025935:16278-16297 | Msa1425990:CDS | 45.0% |
| TACACTCGGCATTGTTAGAG+TGG | - | tig0025935:16395-16414 | Msa1425990:CDS | 45.0% | |
| GGTCATTCGATTCACATAGC+TGG | - | tig0025935:16708-16727 | Msa1425990:CDS | 45.0% | |
| CCGTGACATAGATAGTATCC+AGG | + | tig0025935:16764-16783 | Msa1425990:intergenic | 45.0% | |
| CCCATATGCAGAGGAAGATA+AGG | + | tig0025935:16798-16817 | Msa1425990:intergenic | 45.0% | |
| ACTGGTGTCCAAAATGGTCT+TGG | + | tig0025935:16848-16867 | Msa1425990:intergenic | 45.0% | |
| CCTGTAACTGGTGTCCAAAA+TGG | + | tig0025935:16854-16873 | Msa1425990:intergenic | 45.0% | |
| ! | CCATTTTGGACACCAGTTAC+AGG | - | tig0025935:16851-16870 | Msa1425990:CDS | 45.0% |
| CAGCTTATAAGCATGGGCAA+GGG | + | tig0025935:16918-16937 | Msa1425990:intergenic | 45.0% | |
| TCAGCTTATAAGCATGGGCA+AGG | + | tig0025935:16919-16938 | Msa1425990:intergenic | 45.0% | |
| AGTGTGTACCAAATGCTCTC+TGG | - | tig0025935:17019-17038 | Msa1425990:CDS | 45.0% | |
| !! | CTGGTTATCCAGAGAGCATT+TGG | + | tig0025935:17030-17049 | Msa1425990:intergenic | 45.0% |
| ACTAAAGATTTGGACCAGGC+TGG | + | tig0025935:17049-17068 | Msa1425990:intergenic | 45.0% | |
| TCCATTGTTCAGCCACCAAT+TGG | - | tig0025935:17328-17347 | Msa1425990:CDS | 45.0% | |
| ! | TCCAATTGGTGGCTGAACAA+TGG | + | tig0025935:17332-17351 | Msa1425990:intergenic | 45.0% |
| ACTCTTTCCTCTCCAATTGG+TGG | + | tig0025935:17343-17362 | Msa1425990:intergenic | 45.0% | |
| TCTGTAGACATTGTTGCTGC+TGG | - | tig0025935:17427-17446 | Msa1425990:CDS | 45.0% | |
| GGCTTCTCCTTTAAGTCCAA+TGG | + | tig0025935:17467-17486 | Msa1425990:intergenic | 45.0% | |
| CTCAGTTGAATCACCTCTGT+TGG | - | tig0025935:17681-17700 | Msa1425990:intron | 45.0% | |
| AGGTCTCAGGTTCAAGCAAT+GGG | - | tig0025935:17840-17859 | Msa1425990:intron | 45.0% | |
| AGGGAGAGAAGGAGAACTTC+GGG | + | tig0025935:14785-14804 | Msa0036440:intergenic | 50.0% | |
| GAGGGAGAGAAGGAGAACTT+CGG | + | tig0025935:14786-14805 | Msa0036440:intergenic | 50.0% | |
| AGATATTAGTACGACGGCGG+CGG | + | tig0025935:14834-14853 | Msa1425990:intergenic | 50.0% | |
| GCGAGATATTAGTACGACGG+CGG | + | tig0025935:14837-14856 | Msa1425990:intergenic | 50.0% | |
| CGCTTCTCTATATCTCGCCA+AGG | - | tig0025935:14866-14885 | Msa1425990:intron | 50.0% | |
| CAGGGCAGACATGAAGAGAT+TGG | + | tig0025935:15588-15607 | Msa1425990:intergenic | 50.0% | |
| CAATCTCTTCATGTCTGCCC+TGG | - | tig0025935:15586-15605 | Msa1425990:intron | 50.0% | |
| TTCATGTCTGCCCTGGTTGT+GGG | - | tig0025935:15593-15612 | Msa1425990:intron | 50.0% | |
| GCATACAAACCCCACAACCA+GGG | + | tig0025935:15606-15625 | Msa1425990:intergenic | 50.0% | |
| TGCATACAAACCCCACAACC+AGG | + | tig0025935:15607-15626 | Msa1425990:intergenic | 50.0% | |
| !! | ATAACCAGGGTGTTTTGGGC+TGG | + | tig0025935:15635-15654 | Msa1425990:intergenic | 50.0% |
| CAGGAAACCAGAAAAGCCAG+TGG | - | tig0025935:15801-15820 | Msa1425990:intron | 50.0% | |
| !!! | GCACATACCACTGGCTTTTC+TGG | + | tig0025935:15811-15830 | Msa1425990:intergenic | 50.0% |
| GAGACACTATGGGAAGGTGA+AGG | - | tig0025935:15846-15865 | Msa1425990:intron | 50.0% | |
| GAAGGTGAAGGATCCAACTG+TGG | - | tig0025935:15858-15877 | Msa1425990:intron | 50.0% | |
| GCTTATGGTTGTGGATGCAG+TGG | - | tig0025935:15960-15979 | Msa1425990:CDS | 50.0% | |
| ! | TGATGGGTCGTTTCCTAGGA+AGG | - | tig0025935:15987-16006 | Msa1425990:CDS | 50.0% |
| TCCTAGGAAGGTTGCGAACT+TGG | - | tig0025935:15999-16018 | Msa1425990:CDS | 50.0% | |
| ACCAAGTTCGCAACCTTCCT+AGG | + | tig0025935:16003-16022 | Msa1425990:intergenic | 50.0% | |
| GCATGGAAGCAAGGTAAGTC+CGG | - | tig0025935:16051-16070 | Msa1425990:CDS | 50.0% | |
| CATGGAAGCAAGGTAAGTCC+GGG | - | tig0025935:16052-16071 | Msa1425990:CDS | 50.0% | |
| AGACAAAGAGCTAGAGAGGG+TGG | - | tig0025935:16159-16178 | Msa1425990:intron | 50.0% | |
| TGGTGAGTGCGCTTAGAGAT+TGG | - | tig0025935:16208-16227 | Msa1425990:intron | 50.0% | |
| GGTGAGTGCGCTTAGAGATT+GGG | - | tig0025935:16209-16228 | Msa1425990:intron | 50.0% | |
| GTGAGTGCGCTTAGAGATTG+GGG | - | tig0025935:16210-16229 | Msa1425990:intron | 50.0% | |
| TGAGTGCGCTTAGAGATTGG+GGG | - | tig0025935:16211-16230 | Msa1425990:intron | 50.0% | |
| !! | TGACAGAAGCACCTGTTCCA+GGG | - | tig0025935:16370-16389 | Msa1425990:CDS | 50.0% |
| ACTCGGCATTGTTAGAGTGG+AGG | - | tig0025935:16398-16417 | Msa1425990:CDS | 50.0% | |
| CTCGGCATTGTTAGAGTGGA+GGG | - | tig0025935:16399-16418 | Msa1425990:CDS | 50.0% | |
| GGATGTAGAAGAAACGTCCC+TGG | - | tig0025935:16743-16762 | Msa1425990:CDS | 50.0% | |
| TGTTCAGCCACCAATTGGAG+AGG | - | tig0025935:17333-17352 | Msa1425990:CDS | 50.0% | |
| GTCCAATGGCAAACCAACCA+AGG | + | tig0025935:17453-17472 | Msa1425990:intergenic | 50.0% | |
| GAGAAGCCGTATTGAGTGCA+TGG | - | tig0025935:17479-17498 | Msa1425990:CDS | 50.0% | |
| CAGAGGTGATTCAACTGAGC+CGG | + | tig0025935:17680-17699 | Msa1425990:intergenic | 50.0% | |
| !! | TCACCTCTGTTGGCTTCTGA+TGG | - | tig0025935:17691-17710 | Msa1425990:intron | 50.0% |
| CAGGTCTCAGGTTCAAGCAA+TGG | - | tig0025935:17839-17858 | Msa1425990:intron | 50.0% | |
| ! | GGGGTTTGCGTCTGGTGTTA+AGG | + | tig0025935:15443-15462 | Msa1425990:intergenic | 55.0% |
| TGGAGATAGGGGTTTGCGTC+TGG | + | tig0025935:15451-15470 | Msa1425990:intergenic | 55.0% | |
| CTTCATGTCTGCCCTGGTTG+TGG | - | tig0025935:15592-15611 | Msa1425990:intron | 55.0% | |
| TCATGTCTGCCCTGGTTGTG+GGG | - | tig0025935:15594-15613 | Msa1425990:intron | 55.0% | |
| GATTCCAGCCCAAAACACCC+TGG | - | tig0025935:15628-15647 | Msa1425990:intron | 55.0% | |
| TGACAGCGTGCACATACCAC+TGG | + | tig0025935:15820-15839 | Msa1425990:intergenic | 55.0% | |
| GACCCGTTCAGTGGTGCTTA+TGG | - | tig0025935:15945-15964 | Msa1425990:CDS | 55.0% | |
| CACTACTCTAGGCACGTTCC+CGG | + | tig0025935:16073-16092 | Msa1425990:intergenic | 55.0% | |
| CGTGCCTAGAGTAGTGCTTG+TGG | - | tig0025935:16077-16096 | Msa1425990:intron | 55.0% | |
| ACTGTTGGGGCACAGAATGC+AGG | - | tig0025935:16291-16310 | Msa1425990:CDS | 55.0% | |
| !! | CTGACAGAAGCACCTGTTCC+AGG | - | tig0025935:16369-16388 | Msa1425990:CDS | 55.0% |
| CCTGTTCCAGGGACTACACT+CGG | - | tig0025935:16381-16400 | Msa1425990:CDS | 55.0% | |
| ACAATGCCGAGTGTAGTCCC+TGG | + | tig0025935:16390-16409 | Msa1425990:intergenic | 55.0% | |
| TGGTAAGGATGGAGAAGGCC+AGG | + | tig0025935:16459-16478 | Msa1425990:intergenic | 55.0% | |
| TGCTCTCTGGATAACCAGCC+TGG | - | tig0025935:17032-17051 | Msa1425990:CDS | 55.0% | |
| ! | GACATTGTTGCTGCTGGCCT+TGG | - | tig0025935:17433-17452 | Msa1425990:CDS | 55.0% |
| !! | TTGTTGCTGCTGGCCTTGGT+TGG | - | tig0025935:17437-17456 | Msa1425990:CDS | 55.0% |
| !! | GGCCTTGGTTGGTTTGCCAT+TGG | - | tig0025935:17448-17467 | Msa1425990:CDS | 55.0% |
| CCTCCATCAGAAGCCAACAG+AGG | + | tig0025935:17697-17716 | Msa1425990:intergenic | 55.0% | |
| !! | CCTCTGTTGGCTTCTGATGG+AGG | - | tig0025935:17694-17713 | Msa1425990:intron | 55.0% |
| TATTAGTACGACGGCGGCGG+CGG | + | tig0025935:14831-14850 | Msa1425990:intergenic | 60.0% | |
| AGCAAGTGGGACCCGTTCAG+TGG | - | tig0025935:15936-15955 | Msa1425990:CDS | 60.0% | |
| CCGAGTGTAGTCCCTGGAAC+AGG | + | tig0025935:16384-16403 | Msa1425990:intergenic | 60.0% | |
| !! | GGAGGGTGCTCTTCCAAGTC+AGG | - | tig0025935:16416-16435 | Msa1425990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025935 | gene | 14755 | 18035 | 14755 | ID=Msa1425990;Name=Msa1425990 |
| tig0025935 | mRNA | 14755 | 18035 | 14755 | ID=Msa1425990-mRNA-1;Parent=Msa1425990;Name=Msa1425990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=227|1|1|1|0.5|0.4|5|262|625 |
| tig0025935 | exon | 14755 | 14873 | 14755 | ID=Msa1425990-mRNA-1:exon:4595;Parent=Msa1425990-mRNA-1 |
| tig0025935 | exon | 14924 | 15450 | 14924 | ID=Msa1425990-mRNA-1:exon:4594;Parent=Msa1425990-mRNA-1 |
| tig0025935 | exon | 15918 | 16085 | 15918 | ID=Msa1425990-mRNA-1:exon:4593;Parent=Msa1425990-mRNA-1 |
| tig0025935 | exon | 16230 | 17629 | 16230 | ID=Msa1425990-mRNA-1:exon:4592;Parent=Msa1425990-mRNA-1 |
| tig0025935 | exon | 17883 | 18035 | 17883 | ID=Msa1425990-mRNA-1:exon:4591;Parent=Msa1425990-mRNA-1 |
| tig0025935 | five_prime_UTR | 17883 | 18035 | 17883 | ID=Msa1425990-mRNA-1:five_prime_utr;Parent=Msa1425990-mRNA-1 |
| tig0025935 | five_prime_UTR | 17556 | 17629 | 17556 | ID=Msa1425990-mRNA-1:five_prime_utr;Parent=Msa1425990-mRNA-1 |
| tig0025935 | CDS | 16230 | 17555 | 16230 | ID=Msa1425990-mRNA-1:cds;Parent=Msa1425990-mRNA-1 |
| tig0025935 | CDS | 15918 | 16085 | 15918 | ID=Msa1425990-mRNA-1:cds;Parent=Msa1425990-mRNA-1 |
| tig0025935 | CDS | 15067 | 15450 | 15067 | ID=Msa1425990-mRNA-1:cds;Parent=Msa1425990-mRNA-1 |
| tig0025935 | three_prime_UTR | 14924 | 15066 | 14924 | ID=Msa1425990-mRNA-1:three_prime_utr;Parent=Msa1425990-mRNA-1 |
| tig0025935 | three_prime_UTR | 14755 | 14873 | 14755 | ID=Msa1425990-mRNA-1:three_prime_utr;Parent=Msa1425990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
