AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158230 MtrunA17_Chr7g0252701 90.596 436 4 2 1 400 1 435 0.0 791
Msa1158230 MtrunA17_Chr6g0481411 82.299 435 40 2 1 398 8 442 0.0 731
Msa1158230 MtrunA17_Chr4g0057691 77.241 435 62 2 1 398 33 467 0.0 684
Msa1158230 MtrunA17_Chr6g0481341 73.711 194 51 0 205 398 1 194 1.05e-95 284
Msa1158230 MtrunA17_Chr4g0057711 82.877 146 25 0 105 250 14 159 6.37e-84 253
Msa1158230 MtrunA17_Chr6g0481321 64.286 140 49 1 108 247 17 155 8.56e-55 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158230 AT3G26618.1 83.716 436 34 2 1 400 1 435 0.0 738
Msa1158230 AT1G12920.1 82.639 432 38 2 5 400 4 434 0.0 726
Msa1158230 AT5G47880.2 78.788 429 51 2 5 393 6 434 0.0 686
Msa1158230 AT5G47880.1 78.788 429 51 2 5 393 6 434 0.0 686

Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCATTGTATGGGAGAATT+TGG 0.171668 7_4:-47462808 Msa1158230:CDS
TGCAGAGGGTTTGGTGGTAT+TGG 0.226379 7_4:-47462558 Msa1158230:CDS
CCTCCTCTACCATGTTTCTT+TGG 0.261663 7_4:+47463242 None:intergenic
GTCTCGTATGGTGGGGAAAA+TGG 0.297905 7_4:-47462999 Msa1158230:CDS
GCGAATGAGTACAAAAGATT+TGG 0.305651 7_4:-47462630 Msa1158230:CDS
AAGATGTTGGGAGATGAATT+TGG 0.306796 7_4:-47463723 Msa1158230:CDS
TGCGGCCACATCTGCAGATT+TGG 0.309390 7_4:-47462688 Msa1158230:CDS
CGACCCTTCTTGAGATTTGT+TGG 0.312643 7_4:+47462587 None:intergenic
AATCCAAATATGCACTTAAT+CGG 0.359874 7_4:+47462461 None:intergenic
CACATTGAAGGCTCTAGAAA+TGG 0.360512 7_4:-47462844 Msa1158230:CDS
ATCTGCAGATTTGGAGGTTC+AGG 0.366347 7_4:-47462679 Msa1158230:CDS
ATGTGGCCGCATCGCGGAAG+TGG 0.405903 7_4:+47462700 None:intergenic
AGAGGGTTTGGTGGTATTGG+AGG 0.406600 7_4:-47462555 Msa1158230:CDS
GAGACTGGTAAATATGTTTA+CGG 0.407711 7_4:-47462876 Msa1158230:CDS
CGGTTGAAACACTCATTGTA+TGG 0.412463 7_4:-47462818 Msa1158230:CDS
TTTATTGTTATGGATGGAAA+TGG 0.413603 7_4:-47463329 Msa1158230:CDS
ATTCAAGAGAAACGCTTGAT+AGG 0.417924 7_4:-47462924 Msa1158230:CDS
TTCCACTTAATGTCCCGAAA+AGG 0.426411 7_4:+47463303 None:intergenic
TCCACTTAATGTCCCGAAAA+GGG 0.426867 7_4:+47463304 None:intergenic
TGTAATAAAGCATTTGAAGA+AGG 0.432701 7_4:-47462742 Msa1158230:CDS
CAGACAAGAATATTGAGATA+TGG 0.434895 7_4:-47463848 Msa1158230:CDS
ACTAGTCAGCCTAATGTTGC+TGG 0.435213 7_4:-47463119 Msa1158230:CDS
TAATGTTGCTGGACTCATAC+TGG 0.438513 7_4:-47463108 Msa1158230:CDS
AAACATATTTACCAGTCTCT+TGG 0.438527 7_4:+47462880 None:intergenic
CTGGAAGCTGCAAGAGGTAA+TGG 0.449382 7_4:-47463801 Msa1158230:CDS
ACATCAAGAGTAGGGTAAAC+CGG 0.459780 7_4:-47463689 Msa1158230:CDS
GTATAAAGAACCAATCCATT+TGG 0.460218 7_4:+47463603 None:intergenic
AGTATGAGTCCAGCAACATT+AGG 0.468191 7_4:+47463110 None:intergenic
TATAACAAGGTTCCTCCAAA+TGG 0.471094 7_4:-47463618 Msa1158230:CDS
ATCTCGTGTCACTAAGATGT+TGG 0.473352 7_4:-47463736 Msa1158230:CDS
CGGAGTTGATGACACATTGA+AGG 0.474084 7_4:-47462856 Msa1158230:CDS
CAAGGTTCCTCCAAATGGAT+TGG 0.477410 7_4:-47463613 Msa1158230:CDS
CTTGCCGTCCTCAGTGAGAA+TGG 0.478058 7_4:+47463575 None:intergenic
AATGGATTGGTTCTTTATAC+CGG 0.484935 7_4:-47463600 Msa1158230:CDS
TCTCGTGTCACTAAGATGTT+GGG 0.490357 7_4:-47463735 Msa1158230:CDS
ACATTAGGCTGACTAGTAGC+AGG 0.499450 7_4:+47463125 None:intergenic
CAAAAGATTTGGATGCTCGC+TGG 0.500903 7_4:-47462619 Msa1158230:CDS
ACATTGAAGGCTCTAGAAAT+GGG 0.514674 7_4:-47462843 Msa1158230:CDS
GGGAGAATTTGGATATTACT+AGG 0.521356 7_4:-47462797 Msa1158230:CDS
GTAATAAAGCATTTGAAGAA+GGG 0.522658 7_4:-47462741 Msa1158230:CDS
CCTCTGTTGAGCAGAAGTAA+TGG 0.522824 7_4:+47463650 None:intergenic
GGCCACATCTGCAGATTTGG+AGG 0.524825 7_4:-47462685 Msa1158230:CDS
GTAAACCGGCAATCAGTGCT+TGG 0.540063 7_4:-47463675 Msa1158230:CDS
CTGCTTCAAACATCAAGAGT+AGG 0.540306 7_4:-47463698 Msa1158230:CDS
TTCGCAAACCACTCAAGTAA+TGG 0.547585 7_4:+47462648 None:intergenic
GAAGAGATAAGCCAAGAGAC+TGG 0.550060 7_4:-47462891 Msa1158230:CDS
TGAGGACGGCAAGGAAAAGA+AGG 0.553356 7_4:-47463565 Msa1158230:intron
GTGGTTGATGTCTCGTATGG+TGG 0.555643 7_4:-47463008 Msa1158230:CDS
AACCTCCAAATCTGCAGATG+TGG 0.562932 7_4:+47462683 None:intergenic
AGAAGATGCCATTACTTGAG+TGG 0.565327 7_4:-47462656 Msa1158230:CDS
GTGACCAACAAATCTCAAGA+AGG 0.573488 7_4:-47462591 Msa1158230:CDS
TGCTTCAAACATCAAGAGTA+GGG 0.575365 7_4:-47463697 Msa1158230:CDS
TAAAGAACCAATCCATTTGG+AGG 0.576280 7_4:+47463606 None:intergenic
GTCCTCAGTGAGAATGGTAC+CGG 0.581083 7_4:+47463581 None:intergenic
CGAATGATCTGATATCAAGC+TGG 0.590096 7_4:+47462520 None:intergenic
GATGAGTTATCTGATGATGA+TGG 0.590510 7_4:-47462498 Msa1158230:CDS
TGGTTGATGTCTCGTATGGT+GGG 0.591547 7_4:-47463007 Msa1158230:CDS
CTACCAAAGAAACATGGTAG+AGG 0.592428 7_4:-47463245 Msa1158230:CDS
ATTCTTGTCTGATTCACCAT+CGG 0.594219 7_4:+47463860 None:intergenic
GTTGCTGGACTCATACTGGC+TGG 0.598808 7_4:-47463104 Msa1158230:CDS
CATTCTCACTGAGGACGGCA+AGG 0.604123 7_4:-47463574 Msa1158230:CDS
GGTTGAAACACTCATTGTAT+GGG 0.621105 7_4:-47462817 Msa1158230:CDS
AACGTGGTTGATGTCTCGTA+TGG 0.621452 7_4:-47463011 Msa1158230:CDS
CCAAAGAAACATGGTAGAGG+AGG 0.625338 7_4:-47463242 Msa1158230:CDS
TGACCAACAAATCTCAAGAA+GGG 0.625562 7_4:-47462590 Msa1158230:CDS
CCATTACTTCTGCTCAACAG+AGG 0.649740 7_4:-47463650 Msa1158230:CDS
GGTACCATTCTCACTGAGGA+CGG 0.651299 7_4:-47463579 Msa1158230:CDS
GAAGGCTCTAGAAATGGGTG+CGG 0.653960 7_4:-47462838 Msa1158230:CDS
ACACGAGATATTTGATCACG+TGG 0.654304 7_4:+47463750 None:intergenic
CATTAGGCTGACTAGTAGCA+GGG 0.656179 7_4:+47463126 None:intergenic
AAAGGACTGGAAGCTGCAAG+AGG 0.664338 7_4:-47463807 Msa1158230:CDS
CTTTATTACAATCTCACCAG+TGG 0.665088 7_4:+47462755 None:intergenic
TCAAAGCCACTTCCGCGATG+CGG 0.668435 7_4:-47462706 Msa1158230:CDS
GAGGTTGAAACTATATAACA+AGG 0.687653 7_4:-47463631 Msa1158230:CDS
AGGGTTGATGTAAAACTGAG+TGG 0.688267 7_4:+47463145 None:intergenic
CTGCAGATGTGGCCGCATCG+CGG 0.688811 7_4:+47462694 None:intergenic
TCTGCATAAACAATGGCCGA+TGG 0.701549 7_4:-47463876 None:intergenic
GGTTGATGTCTCGTATGGTG+GGG 0.707328 7_4:-47463006 Msa1158230:CDS
CGAGATATTTGATCACGTGG+AGG 0.714871 7_4:+47463753 None:intergenic
GTTGATCTACCAAAGAAACA+TGG 0.720655 7_4:-47463251 Msa1158230:CDS
ATTAAGTGGAAATACTCGCG+AGG 0.721816 7_4:-47463291 Msa1158230:CDS
TGATGATGATGGAGTGTACG+AGG 0.728062 7_4:-47462487 Msa1158230:CDS
TACCGGTACCATTCTCACTG+AGG 0.737721 7_4:-47463583 Msa1158230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! NNNNNNNNNNATGCATTGAT+TGG + chr7_4:47462827-47462846 None:intergenic 15.0%
!!! NNNNNNNNNNATGCATTGAT+TGG + chr7_4:47462827-47462846 None:intergenic 15.0%
!! AAGATCAAAAAGTTGATCAA+AGG - chr7_4:47462515-47462534 Msa1158230:CDS 25.0%
!!! CAAGTTTGGTTTTATTGTTA+TGG - chr7_4:47463001-47463020 Msa1158230:CDS 25.0%
!!! TTTGGTTTTATTGTTATGGA+TGG - chr7_4:47463005-47463024 Msa1158230:CDS 25.0%
! TTTATTGTTATGGATGGAAA+TGG - chr7_4:47463011-47463030 Msa1158230:CDS 25.0%
!! TGTAATAAAGCATTTGAAGA+AGG - chr7_4:47463598-47463617 Msa1158230:CDS 25.0%
!! GTAATAAAGCATTTGAAGAA+GGG - chr7_4:47463599-47463618 Msa1158230:CDS 25.0%
!! AAGATCAAAAAGTTGATCAA+AGG - chr7_4:47462515-47462534 Msa1158230:CDS 25.0%
!!! CAAGTTTGGTTTTATTGTTA+TGG - chr7_4:47463001-47463020 Msa1158230:CDS 25.0%
!!! TTTGGTTTTATTGTTATGGA+TGG - chr7_4:47463005-47463024 Msa1158230:CDS 25.0%
! TTTATTGTTATGGATGGAAA+TGG - chr7_4:47463011-47463030 Msa1158230:CDS 25.0%
!! TGTAATAAAGCATTTGAAGA+AGG - chr7_4:47463598-47463617 Msa1158230:CDS 25.0%
!! GTAATAAAGCATTTGAAGAA+GGG - chr7_4:47463599-47463618 Msa1158230:CDS 25.0%
CAGACAAGAATATTGAGATA+TGG - chr7_4:47462492-47462511 Msa1158230:CDS 30.0%
GAGGTTGAAACTATATAACA+AGG - chr7_4:47462709-47462728 Msa1158230:CDS 30.0%
GTATAAAGAACCAATCCATT+TGG + chr7_4:47462740-47462759 None:intergenic 30.0%
!! AATGGATTGGTTCTTTATAC+CGG - chr7_4:47462740-47462759 Msa1158230:CDS 30.0%
!! NATGCATTGATTGGTTTGAA+AGG + chr7_4:47462818-47462837 None:intergenic 30.0%
!! AATATTTTTGCTTGCAAACG+AGG + chr7_4:47463308-47463327 None:intergenic 30.0%
AAACATATTTACCAGTCTCT+TGG + chr7_4:47463463-47463482 None:intergenic 30.0%
GAGACTGGTAAATATGTTTA+CGG - chr7_4:47463464-47463483 Msa1158230:intron 30.0%
CAGACAAGAATATTGAGATA+TGG - chr7_4:47462492-47462511 Msa1158230:CDS 30.0%
GAGGTTGAAACTATATAACA+AGG - chr7_4:47462709-47462728 Msa1158230:CDS 30.0%
GTATAAAGAACCAATCCATT+TGG + chr7_4:47462740-47462759 None:intergenic 30.0%
!! AATGGATTGGTTCTTTATAC+CGG - chr7_4:47462740-47462759 Msa1158230:CDS 30.0%
!! NATGCATTGATTGGTTTGAA+AGG + chr7_4:47462818-47462837 None:intergenic 30.0%
!! AATATTTTTGCTTGCAAACG+AGG + chr7_4:47463308-47463327 None:intergenic 30.0%
AAACATATTTACCAGTCTCT+TGG + chr7_4:47463463-47463482 None:intergenic 30.0%
GAGACTGGTAAATATGTTTA+CGG - chr7_4:47463464-47463483 Msa1158230:intron 30.0%
ATTCTTGTCTGATTCACCAT+CGG + chr7_4:47462483-47462502 None:intergenic 35.0%
! CAAAAAGTTGATCAAAGGAC+TGG - chr7_4:47462520-47462539 Msa1158230:CDS 35.0%
AAGATGTTGGGAGATGAATT+TGG - chr7_4:47462617-47462636 Msa1158230:CDS 35.0%
TGCTTCAAACATCAAGAGTA+GGG - chr7_4:47462643-47462662 Msa1158230:CDS 35.0%
TATAACAAGGTTCCTCCAAA+TGG - chr7_4:47462722-47462741 Msa1158230:CDS 35.0%
TAAAGAACCAATCCATTTGG+AGG + chr7_4:47462737-47462756 None:intergenic 35.0%
CTAGAATCTGATGACAAGTT+TGG - chr7_4:47462987-47463006 Msa1158230:CDS 35.0%
GTTGATCTACCAAAGAAACA+TGG - chr7_4:47463089-47463108 Msa1158230:CDS 35.0%
!!! AATTGTGTCGTTTTTCCATC+CGG + chr7_4:47463151-47463170 None:intergenic 35.0%
AAAAACGACACAATTACGTC+AGG - chr7_4:47463156-47463175 Msa1158230:CDS 35.0%
GCAAGCAAAAATATTGAACG+TGG - chr7_4:47463313-47463332 Msa1158230:CDS 35.0%
ATTCAAGAGAAACGCTTGAT+AGG - chr7_4:47463416-47463435 Msa1158230:intron 35.0%
!! ACATTGAAGGCTCTAGAAAT+GGG - chr7_4:47463497-47463516 Msa1158230:intron 35.0%
GGTTGAAACACTCATTGTAT+GGG - chr7_4:47463523-47463542 Msa1158230:intron 35.0%
ACTCATTGTATGGGAGAATT+TGG - chr7_4:47463532-47463551 Msa1158230:intron 35.0%
GGGAGAATTTGGATATTACT+AGG - chr7_4:47463543-47463562 Msa1158230:intron 35.0%
CTTTATTACAATCTCACCAG+TGG + chr7_4:47463588-47463607 None:intergenic 35.0%
GCGAATGAGTACAAAAGATT+TGG - chr7_4:47463710-47463729 Msa1158230:CDS 35.0%
TGACCAACAAATCTCAAGAA+GGG - chr7_4:47463750-47463769 Msa1158230:CDS 35.0%
! GATGAGTTATCTGATGATGA+TGG - chr7_4:47463842-47463861 Msa1158230:CDS 35.0%
ATTCTTGTCTGATTCACCAT+CGG + chr7_4:47462483-47462502 None:intergenic 35.0%
! CAAAAAGTTGATCAAAGGAC+TGG - chr7_4:47462520-47462539 Msa1158230:CDS 35.0%
AAGATGTTGGGAGATGAATT+TGG - chr7_4:47462617-47462636 Msa1158230:CDS 35.0%
TGCTTCAAACATCAAGAGTA+GGG - chr7_4:47462643-47462662 Msa1158230:CDS 35.0%
TATAACAAGGTTCCTCCAAA+TGG - chr7_4:47462722-47462741 Msa1158230:CDS 35.0%
TAAAGAACCAATCCATTTGG+AGG + chr7_4:47462737-47462756 None:intergenic 35.0%
CTAGAATCTGATGACAAGTT+TGG - chr7_4:47462987-47463006 Msa1158230:CDS 35.0%
GTTGATCTACCAAAGAAACA+TGG - chr7_4:47463089-47463108 Msa1158230:CDS 35.0%
!!! AATTGTGTCGTTTTTCCATC+CGG + chr7_4:47463151-47463170 None:intergenic 35.0%
AAAAACGACACAATTACGTC+AGG - chr7_4:47463156-47463175 Msa1158230:CDS 35.0%
GCAAGCAAAAATATTGAACG+TGG - chr7_4:47463313-47463332 Msa1158230:CDS 35.0%
ATTCAAGAGAAACGCTTGAT+AGG - chr7_4:47463416-47463435 Msa1158230:intron 35.0%
!! ACATTGAAGGCTCTAGAAAT+GGG - chr7_4:47463497-47463516 Msa1158230:intron 35.0%
GGTTGAAACACTCATTGTAT+GGG - chr7_4:47463523-47463542 Msa1158230:intron 35.0%
ACTCATTGTATGGGAGAATT+TGG - chr7_4:47463532-47463551 Msa1158230:intron 35.0%
GGGAGAATTTGGATATTACT+AGG - chr7_4:47463543-47463562 Msa1158230:intron 35.0%
CTTTATTACAATCTCACCAG+TGG + chr7_4:47463588-47463607 None:intergenic 35.0%
GCGAATGAGTACAAAAGATT+TGG - chr7_4:47463710-47463729 Msa1158230:CDS 35.0%
TGACCAACAAATCTCAAGAA+GGG - chr7_4:47463750-47463769 Msa1158230:CDS 35.0%
! GATGAGTTATCTGATGATGA+TGG - chr7_4:47463842-47463861 Msa1158230:CDS 35.0%
ACACGAGATATTTGATCACG+TGG + chr7_4:47462593-47462612 None:intergenic 40.0%
! ATCTCGTGTCACTAAGATGT+TGG - chr7_4:47462604-47462623 Msa1158230:CDS 40.0%
! TCTCGTGTCACTAAGATGTT+GGG - chr7_4:47462605-47462624 Msa1158230:CDS 40.0%
CTGCTTCAAACATCAAGAGT+AGG - chr7_4:47462642-47462661 Msa1158230:CDS 40.0%
ACATCAAGAGTAGGGTAAAC+CGG - chr7_4:47462651-47462670 Msa1158230:CDS 40.0%
! GATGGAAATGGAACCCTTTT+CGG - chr7_4:47463023-47463042 Msa1158230:CDS 40.0%
! ATGGAAATGGAACCCTTTTC+GGG - chr7_4:47463024-47463043 Msa1158230:CDS 40.0%
TCCACTTAATGTCCCGAAAA+GGG + chr7_4:47463039-47463058 None:intergenic 40.0%
TTCCACTTAATGTCCCGAAA+AGG + chr7_4:47463040-47463059 None:intergenic 40.0%
ATTAAGTGGAAATACTCGCG+AGG - chr7_4:47463049-47463068 Msa1158230:CDS 40.0%
CTACCAAAGAAACATGGTAG+AGG - chr7_4:47463095-47463114 Msa1158230:CDS 40.0%
!! AGGGTTGATGTAAAACTGAG+TGG + chr7_4:47463198-47463217 None:intergenic 40.0%
AGTATGAGTCCAGCAACATT+AGG + chr7_4:47463233-47463252 None:intergenic 40.0%
TAATGTTGCTGGACTCATAC+TGG - chr7_4:47463232-47463251 Msa1158230:CDS 40.0%
!! CACATTGAAGGCTCTAGAAA+TGG - chr7_4:47463496-47463515 Msa1158230:intron 40.0%
CGGTTGAAACACTCATTGTA+TGG - chr7_4:47463522-47463541 Msa1158230:intron 40.0%
AGAAGATGCCATTACTTGAG+TGG - chr7_4:47463684-47463703 Msa1158230:CDS 40.0%
TTCGCAAACCACTCAAGTAA+TGG + chr7_4:47463695-47463714 None:intergenic 40.0%
GTGACCAACAAATCTCAAGA+AGG - chr7_4:47463749-47463768 Msa1158230:CDS 40.0%
CGAATGATCTGATATCAAGC+TGG + chr7_4:47463823-47463842 None:intergenic 40.0%
ACACGAGATATTTGATCACG+TGG + chr7_4:47462593-47462612 None:intergenic 40.0%
! ATCTCGTGTCACTAAGATGT+TGG - chr7_4:47462604-47462623 Msa1158230:CDS 40.0%
! TCTCGTGTCACTAAGATGTT+GGG - chr7_4:47462605-47462624 Msa1158230:CDS 40.0%
CTGCTTCAAACATCAAGAGT+AGG - chr7_4:47462642-47462661 Msa1158230:CDS 40.0%
ACATCAAGAGTAGGGTAAAC+CGG - chr7_4:47462651-47462670 Msa1158230:CDS 40.0%
! GATGGAAATGGAACCCTTTT+CGG - chr7_4:47463023-47463042 Msa1158230:CDS 40.0%
! ATGGAAATGGAACCCTTTTC+GGG - chr7_4:47463024-47463043 Msa1158230:CDS 40.0%
TCCACTTAATGTCCCGAAAA+GGG + chr7_4:47463039-47463058 None:intergenic 40.0%
TTCCACTTAATGTCCCGAAA+AGG + chr7_4:47463040-47463059 None:intergenic 40.0%
ATTAAGTGGAAATACTCGCG+AGG - chr7_4:47463049-47463068 Msa1158230:CDS 40.0%
CTACCAAAGAAACATGGTAG+AGG - chr7_4:47463095-47463114 Msa1158230:CDS 40.0%
!! AGGGTTGATGTAAAACTGAG+TGG + chr7_4:47463198-47463217 None:intergenic 40.0%
AGTATGAGTCCAGCAACATT+AGG + chr7_4:47463233-47463252 None:intergenic 40.0%
TAATGTTGCTGGACTCATAC+TGG - chr7_4:47463232-47463251 Msa1158230:CDS 40.0%
!! CACATTGAAGGCTCTAGAAA+TGG - chr7_4:47463496-47463515 Msa1158230:intron 40.0%
CGGTTGAAACACTCATTGTA+TGG - chr7_4:47463522-47463541 Msa1158230:intron 40.0%
AGAAGATGCCATTACTTGAG+TGG - chr7_4:47463684-47463703 Msa1158230:CDS 40.0%
TTCGCAAACCACTCAAGTAA+TGG + chr7_4:47463695-47463714 None:intergenic 40.0%
GTGACCAACAAATCTCAAGA+AGG - chr7_4:47463749-47463768 Msa1158230:CDS 40.0%
CGAATGATCTGATATCAAGC+TGG + chr7_4:47463823-47463842 None:intergenic 40.0%
CGAGATATTTGATCACGTGG+AGG + chr7_4:47462590-47462609 None:intergenic 45.0%
CCTCTGTTGAGCAGAAGTAA+TGG + chr7_4:47462693-47462712 None:intergenic 45.0%
CCATTACTTCTGCTCAACAG+AGG - chr7_4:47462690-47462709 Msa1158230:CDS 45.0%
CAAGGTTCCTCCAAATGGAT+TGG - chr7_4:47462727-47462746 Msa1158230:CDS 45.0%
!! ACCCTTTTCGGGACATTAAG+TGG - chr7_4:47463035-47463054 Msa1158230:CDS 45.0%
CCTCCTCTACCATGTTTCTT+TGG + chr7_4:47463101-47463120 None:intergenic 45.0%
CCAAAGAAACATGGTAGAGG+AGG - chr7_4:47463098-47463117 Msa1158230:CDS 45.0%
CATTAGGCTGACTAGTAGCA+GGG + chr7_4:47463217-47463236 None:intergenic 45.0%
ACATTAGGCTGACTAGTAGC+AGG + chr7_4:47463218-47463237 None:intergenic 45.0%
ACTAGTCAGCCTAATGTTGC+TGG - chr7_4:47463221-47463240 Msa1158230:CDS 45.0%
! AACGTGGTTGATGTCTCGTA+TGG - chr7_4:47463329-47463348 Msa1158230:CDS 45.0%
! TGGTTGATGTCTCGTATGGT+GGG - chr7_4:47463333-47463352 Msa1158230:CDS 45.0%
GAAGAGATAAGCCAAGAGAC+TGG - chr7_4:47463449-47463468 Msa1158230:intron 45.0%
!! CGGAGTTGATGACACATTGA+AGG - chr7_4:47463484-47463503 Msa1158230:intron 45.0%
GTGCTGAAAAATGCTACCAC+TGG - chr7_4:47463569-47463588 Msa1158230:CDS 45.0%
AACCTCCAAATCTGCAGATG+TGG + chr7_4:47463660-47463679 None:intergenic 45.0%
ATCTGCAGATTTGGAGGTTC+AGG - chr7_4:47463661-47463680 Msa1158230:CDS 45.0%
CAAAAGATTTGGATGCTCGC+TGG - chr7_4:47463721-47463740 Msa1158230:CDS 45.0%
CGACCCTTCTTGAGATTTGT+TGG + chr7_4:47463756-47463775 None:intergenic 45.0%
!! TGATGATGATGGAGTGTACG+AGG - chr7_4:47463853-47463872 Msa1158230:CDS 45.0%
CGAGATATTTGATCACGTGG+AGG + chr7_4:47462590-47462609 None:intergenic 45.0%
CCTCTGTTGAGCAGAAGTAA+TGG + chr7_4:47462693-47462712 None:intergenic 45.0%
CCATTACTTCTGCTCAACAG+AGG - chr7_4:47462690-47462709 Msa1158230:CDS 45.0%
CAAGGTTCCTCCAAATGGAT+TGG - chr7_4:47462727-47462746 Msa1158230:CDS 45.0%
!! ACCCTTTTCGGGACATTAAG+TGG - chr7_4:47463035-47463054 Msa1158230:CDS 45.0%
CCTCCTCTACCATGTTTCTT+TGG + chr7_4:47463101-47463120 None:intergenic 45.0%
CCAAAGAAACATGGTAGAGG+AGG - chr7_4:47463098-47463117 Msa1158230:CDS 45.0%
CATTAGGCTGACTAGTAGCA+GGG + chr7_4:47463217-47463236 None:intergenic 45.0%
ACATTAGGCTGACTAGTAGC+AGG + chr7_4:47463218-47463237 None:intergenic 45.0%
ACTAGTCAGCCTAATGTTGC+TGG - chr7_4:47463221-47463240 Msa1158230:CDS 45.0%
! AACGTGGTTGATGTCTCGTA+TGG - chr7_4:47463329-47463348 Msa1158230:CDS 45.0%
! TGGTTGATGTCTCGTATGGT+GGG - chr7_4:47463333-47463352 Msa1158230:CDS 45.0%
GAAGAGATAAGCCAAGAGAC+TGG - chr7_4:47463449-47463468 Msa1158230:intron 45.0%
!! CGGAGTTGATGACACATTGA+AGG - chr7_4:47463484-47463503 Msa1158230:intron 45.0%
GTGCTGAAAAATGCTACCAC+TGG - chr7_4:47463569-47463588 Msa1158230:CDS 45.0%
AACCTCCAAATCTGCAGATG+TGG + chr7_4:47463660-47463679 None:intergenic 45.0%
ATCTGCAGATTTGGAGGTTC+AGG - chr7_4:47463661-47463680 Msa1158230:CDS 45.0%
CAAAAGATTTGGATGCTCGC+TGG - chr7_4:47463721-47463740 Msa1158230:CDS 45.0%
CGACCCTTCTTGAGATTTGT+TGG + chr7_4:47463756-47463775 None:intergenic 45.0%
!! TGATGATGATGGAGTGTACG+AGG - chr7_4:47463853-47463872 Msa1158230:CDS 45.0%
AAAGGACTGGAAGCTGCAAG+AGG - chr7_4:47462533-47462552 Msa1158230:CDS 50.0%
CTGGAAGCTGCAAGAGGTAA+TGG - chr7_4:47462539-47462558 Msa1158230:CDS 50.0%
GTAAACCGGCAATCAGTGCT+TGG - chr7_4:47462665-47462684 Msa1158230:CDS 50.0%
TACCGGTACCATTCTCACTG+AGG - chr7_4:47462757-47462776 Msa1158230:CDS 50.0%
GTCCTCAGTGAGAATGGTAC+CGG + chr7_4:47462762-47462781 None:intergenic 50.0%
GGTACCATTCTCACTGAGGA+CGG - chr7_4:47462761-47462780 Msa1158230:CDS 50.0%
TGAGGACGGCAAGGAAAAGA+AGG - chr7_4:47462775-47462794 Msa1158230:CDS 50.0%
! CTTTGCGTTTTGCTCGTCTC+CGG - chr7_4:47463129-47463148 Msa1158230:CDS 50.0%
! GTGGTTGATGTCTCGTATGG+TGG - chr7_4:47463332-47463351 Msa1158230:CDS 50.0%
! GGTTGATGTCTCGTATGGTG+GGG - chr7_4:47463334-47463353 Msa1158230:CDS 50.0%
! GTCTCGTATGGTGGGGAAAA+TGG - chr7_4:47463341-47463360 Msa1158230:intron 50.0%
!! GAAGGCTCTAGAAATGGGTG+CGG - chr7_4:47463502-47463521 Msa1158230:intron 50.0%
! AAGGGTCGCAGTTTTGCAGA+GGG - chr7_4:47463768-47463787 Msa1158230:CDS 50.0%
! TCGCAGTTTTGCAGAGGGTT+TGG - chr7_4:47463773-47463792 Msa1158230:CDS 50.0%
! CAGTTTTGCAGAGGGTTTGG+TGG - chr7_4:47463776-47463795 Msa1158230:CDS 50.0%
!! TGCAGAGGGTTTGGTGGTAT+TGG - chr7_4:47463782-47463801 Msa1158230:CDS 50.0%
!! AGAGGGTTTGGTGGTATTGG+AGG - chr7_4:47463785-47463804 Msa1158230:CDS 50.0%
AAAGGACTGGAAGCTGCAAG+AGG - chr7_4:47462533-47462552 Msa1158230:CDS 50.0%
CTGGAAGCTGCAAGAGGTAA+TGG - chr7_4:47462539-47462558 Msa1158230:CDS 50.0%
GTAAACCGGCAATCAGTGCT+TGG - chr7_4:47462665-47462684 Msa1158230:CDS 50.0%
TACCGGTACCATTCTCACTG+AGG - chr7_4:47462757-47462776 Msa1158230:CDS 50.0%
GTCCTCAGTGAGAATGGTAC+CGG + chr7_4:47462762-47462781 None:intergenic 50.0%
GGTACCATTCTCACTGAGGA+CGG - chr7_4:47462761-47462780 Msa1158230:CDS 50.0%
TGAGGACGGCAAGGAAAAGA+AGG - chr7_4:47462775-47462794 Msa1158230:CDS 50.0%
! CTTTGCGTTTTGCTCGTCTC+CGG - chr7_4:47463129-47463148 Msa1158230:CDS 50.0%
! GTGGTTGATGTCTCGTATGG+TGG - chr7_4:47463332-47463351 Msa1158230:CDS 50.0%
! GGTTGATGTCTCGTATGGTG+GGG - chr7_4:47463334-47463353 Msa1158230:CDS 50.0%
! GTCTCGTATGGTGGGGAAAA+TGG - chr7_4:47463341-47463360 Msa1158230:intron 50.0%
!! GAAGGCTCTAGAAATGGGTG+CGG - chr7_4:47463502-47463521 Msa1158230:intron 50.0%
! AAGGGTCGCAGTTTTGCAGA+GGG - chr7_4:47463768-47463787 Msa1158230:CDS 50.0%
! TCGCAGTTTTGCAGAGGGTT+TGG - chr7_4:47463773-47463792 Msa1158230:CDS 50.0%
! CAGTTTTGCAGAGGGTTTGG+TGG - chr7_4:47463776-47463795 Msa1158230:CDS 50.0%
!! TGCAGAGGGTTTGGTGGTAT+TGG - chr7_4:47463782-47463801 Msa1158230:CDS 50.0%
!! AGAGGGTTTGGTGGTATTGG+AGG - chr7_4:47463785-47463804 Msa1158230:CDS 50.0%
!! TGGCTCCAAGCACTGATTGC+CGG + chr7_4:47462673-47462692 None:intergenic 55.0%
CTTGCCGTCCTCAGTGAGAA+TGG + chr7_4:47462768-47462787 None:intergenic 55.0%
CATTCTCACTGAGGACGGCA+AGG - chr7_4:47462766-47462785 Msa1158230:CDS 55.0%
GTTGCTGGACTCATACTGGC+TGG - chr7_4:47463236-47463255 Msa1158230:CDS 55.0%
TCAAAGCCACTTCCGCGATG+CGG - chr7_4:47463634-47463653 Msa1158230:CDS 55.0%
TGCGGCCACATCTGCAGATT+TGG - chr7_4:47463652-47463671 Msa1158230:CDS 55.0%
GGCCACATCTGCAGATTTGG+AGG - chr7_4:47463655-47463674 Msa1158230:CDS 55.0%
! GAAGGGTCGCAGTTTTGCAG+AGG - chr7_4:47463767-47463786 Msa1158230:CDS 55.0%
!! TGGCTCCAAGCACTGATTGC+CGG + chr7_4:47462673-47462692 None:intergenic 55.0%
CTTGCCGTCCTCAGTGAGAA+TGG + chr7_4:47462768-47462787 None:intergenic 55.0%
CATTCTCACTGAGGACGGCA+AGG - chr7_4:47462766-47462785 Msa1158230:CDS 55.0%
GTTGCTGGACTCATACTGGC+TGG - chr7_4:47463236-47463255 Msa1158230:CDS 55.0%
TCAAAGCCACTTCCGCGATG+CGG - chr7_4:47463634-47463653 Msa1158230:CDS 55.0%
TGCGGCCACATCTGCAGATT+TGG - chr7_4:47463652-47463671 Msa1158230:CDS 55.0%
GGCCACATCTGCAGATTTGG+AGG - chr7_4:47463655-47463674 Msa1158230:CDS 55.0%
! GAAGGGTCGCAGTTTTGCAG+AGG - chr7_4:47463767-47463786 Msa1158230:CDS 55.0%
! GCGTTTTGCTCGTCTCCGGA+TGG - chr7_4:47463133-47463152 Msa1158230:CDS 60.0%
! GCGTTTTGCTCGTCTCCGGA+TGG - chr7_4:47463133-47463152 Msa1158230:CDS 60.0%
ATGTGGCCGCATCGCGGAAG+TGG + chr7_4:47463643-47463662 None:intergenic 65.0%
CTGCAGATGTGGCCGCATCG+CGG + chr7_4:47463649-47463668 None:intergenic 65.0%
ATGTGGCCGCATCGCGGAAG+TGG + chr7_4:47463643-47463662 None:intergenic 65.0%
CTGCAGATGTGGCCGCATCG+CGG + chr7_4:47463649-47463668 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 47462476 47463886 47462476 ID=Msa1158230;Name=Msa1158230
chr7_4 mRNA 47462476 47463886 47462476 ID=Msa1158230-mRNA-1;Parent=Msa1158230;Name=Msa1158230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|400
chr7_4 exon 47463566 47463886 47463566 ID=Msa1158230-mRNA-1:exon:12657;Parent=Msa1158230-mRNA-1
chr7_4 exon 47462476 47463357 47462476 ID=Msa1158230-mRNA-1:exon:12656;Parent=Msa1158230-mRNA-1
chr7_4 CDS 47463566 47463886 47463566 ID=Msa1158230-mRNA-1:cds;Parent=Msa1158230-mRNA-1
chr7_4 CDS 47462476 47463357 47462476 ID=Msa1158230-mRNA-1:cds;Parent=Msa1158230-mRNA-1
Gene Sequence

>Msa1158230

ATGGCCGATGGTGAATCAGACAAGAATATTGAGATATGGAAGATCAAAAAGTTGATCAAAGGACTGGAAGCTGCAAGAGGTAATGGTACTAGTATGATTTCTCTGATAATGCCTCCACGTGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAGAGTAGGGTAAACCGGCAATCAGTGCTTGGAGCCATTACTTCTGCTCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGATTGGTTCTTTATACCGGTACCATTCTCACTGAGGACGGCAAGGAAAAGAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACCCTTTTCGGGACATTAAGTGGAAATACTCGCGAGGTGCTTCATAAATTTACTGTTGATCTACCAAAGAAACATGGTAGAGGAGGACAGTCAGCTTTGCGTTTTGCTCGTCTCCGGATGGAAAAACGACACAATTACGTCAGGAAGACTGCAGAACTTGCCACTCAGTTTTACATCAACCCTGCTACTAGTCAGCCTAATGTTGCTGGACTCATACTGGCTGGTTCAGCTGATTTCAAGACTGAGCTGAGTCAATCAGATATGTTTGATCCTCGTTTGCAAGCAAAAATATTGAACGTGGTTGATGTCTCGTATGGTGGGGAAAATGGCTTTAATCAAGCTATTGAATTATCTGCAGAGATTCTATCTAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGAAAATACTTTGAAGAGATAAGCCAAGAGACTGGTAAATATGTTTACGGAGTTGATGACACATTGAAGGCTCTAGAAATGGGTGCGGTTGAAACACTCATTGTATGGGAGAATTTGGATATTACTAGGTATGTGCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTGAAGAAGGGACAAGAAAGTGATCAAAGCCACTTCCGCGATGCGGCCACATCTGCAGATTTGGAGGTTCAGGAGAAGATGCCATTACTTGAGTGGTTTGCGAATGAGTACAAAAGATTTGGATGCTCGCTGGAATTCGTGACCAACAAATCTCAAGAAGGGTCGCAGTTTTGCAGAGGGTTTGGTGGTATTGGAGGTATGCTTCGCTACCAGCTTGATATCAGATCATTCGATGAGTTATCTGATGATGATGGAGTGTACGAGGATTCCGATTAA

Protein sequence

>Msa1158230

MADGESDKNIEIWKIKKLIKGLEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTILTEDGKEKKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKALEMGAVETLIVWENLDITRYVLKNATTGEIVIKHLKKGQESDQSHFRDAATSADLEVQEKMPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDIRSFDELSDDDGVYEDSD*