AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174100 MtrunA17_Chr2g0290601 94.721 341 18 0 1 341 1 341 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174100 AT5G47680.1 66.460 322 105 2 12 330 16 337 2.24e-133 384

Find 114 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTTGTTCTTTGGATTT+TGG 0.161949 8_1:+5149837 Msa1174100:three_prime_UTR
AATCTATTTAGGATGAATTT+TGG 0.171342 8_1:+5150207 Msa1174100:three_prime_UTR
GGTTGTGATGGTTCTGGGTT+TGG 0.219937 8_1:-5146666 None:intergenic
TAGCTTCTTCTTCGCGTTCT+TGG 0.225791 8_1:-5146703 None:intergenic
CTTGTTAAAGCGAAAGAATT+AGG 0.235954 8_1:+5146942 Msa1174100:CDS
CCTCTTGGAACGTTGTTCTT+TGG 0.251149 8_1:+5149830 Msa1174100:three_prime_UTR
TTGAACAAGATATATATAAT+TGG 0.269988 8_1:+5148478 Msa1174100:CDS
CCTGCACATCTTTGGCTAAC+TGG 0.275764 8_1:+5148295 Msa1174100:CDS
GAAGTGGGTTGTGATGGTTC+TGG 0.288321 8_1:-5146672 None:intergenic
TGGAGGTGGAACTGTGGATT+CGG 0.300517 8_1:-5146646 None:intergenic
CAAACTGAACCTAAATAAAA+AGG 0.302071 8_1:-5150239 None:intergenic
TATTCTGTAGGAATCTATTT+AGG 0.309485 8_1:+5150196 Msa1174100:three_prime_UTR
TTGAAGCGAGAATGAGTTTA+CGG 0.339611 8_1:+5146868 Msa1174100:CDS
CAAACAGCTAAACTTCCTAT+TGG 0.340136 8_1:+5148565 Msa1174100:CDS
AAGTGGGTTGTGATGGTTCT+GGG 0.356287 8_1:-5146671 None:intergenic
TCATCAACAAGTTTGTTAGA+AGG 0.359781 8_1:-5149632 None:intergenic
GTGAAACCCCTGCACATCTT+TGG 0.363917 8_1:+5148287 Msa1174100:CDS
GTGGATTAGTTGATAGGAAT+AGG 0.366874 8_1:+5148500 Msa1174100:CDS
TTGTTAAAGCGAAAGAATTA+GGG 0.371694 8_1:+5146943 Msa1174100:CDS
GGCAGATCGTAAGGATGATT+TGG 0.373805 8_1:+5148411 Msa1174100:CDS
CTTGAAGATGTCTAGTTCTC+AGG 0.377122 8_1:+5148594 Msa1174100:CDS
GTGGATTCGGGTTCGTGGGC+TGG 0.377972 8_1:-5146633 None:intergenic
TGTGGCTTTGCCACAACAAT+AGG 0.386344 8_1:-5149977 None:intergenic
TAATTGGTGGATTAGTTGAT+AGG 0.387931 8_1:+5148494 Msa1174100:CDS
CACAAGTTTCAAATCATTGA+TGG 0.392956 8_1:+5149690 Msa1174100:three_prime_UTR
CAAAACAACGACAATAGAAA+TGG 0.408049 8_1:+5146608 Msa1174100:exon
GGAGGTGGAACTGTGGATTC+GGG 0.416358 8_1:-5146645 None:intergenic
GATGGTTCTGGGTTTGGAGG+TGG 0.417041 8_1:-5146660 None:intergenic
AAGAGGGTAATTCCATCATA+AGG 0.436588 8_1:-5149813 None:intergenic
AGAAATACTACTCAAGTTCC+TGG 0.437281 8_1:+5149430 Msa1174100:CDS
AGAGAGAATGGAGAAAAGGT+TGG 0.447049 8_1:+5146893 Msa1174100:CDS
AGAAGGAAACTGAACGGAAA+AGG 0.448551 8_1:+5146790 Msa1174100:CDS
GTCACACCTCGCAGAAAATC+CGG 0.448803 8_1:-5149787 None:intergenic
GAACTGTGGATTCGGGTTCG+TGG 0.452481 8_1:-5146638 None:intergenic
ATGCATACTTGTAGTTAAGT+TGG 0.455539 8_1:+5150001 Msa1174100:three_prime_UTR
AACTGTGGATTCGGGTTCGT+GGG 0.456447 8_1:-5146637 None:intergenic
TTACAAGAACCGAACATAGT+AGG 0.458262 8_1:-5150069 None:intergenic
TGTAAAACATATTCTTTGAG+AGG 0.461127 8_1:+5150087 Msa1174100:three_prime_UTR
CATCAACAAGTTTGTTAGAA+GGG 0.461175 8_1:-5149631 None:intergenic
TGAAGTGTAGAGCGTAGAAC+TGG 0.461467 8_1:+5149652 Msa1174100:exon
AACAAGATATATATAATTGG+TGG 0.462299 8_1:+5148481 Msa1174100:CDS
AGCTAGACAAACAACAAAGA+TGG 0.462734 8_1:+5146721 Msa1174100:CDS
CCAGTTAGCCAAAGATGTGC+AGG 0.463576 8_1:-5148295 None:intergenic
TAAGTCTTATATCGAAGTAT+TGG 0.470291 8_1:+5148390 Msa1174100:CDS
TGTGATGGTTCTGGGTTTGG+AGG 0.475378 8_1:-5146663 None:intergenic
TCGACGATTCCTACTATGTT+CGG 0.475571 8_1:+5150060 Msa1174100:three_prime_UTR
GAGTTTACGGAAAGAGAGAA+TGG 0.480649 8_1:+5146881 Msa1174100:CDS
AGTTGATAGGAATAGGTTCA+AGG 0.488910 8_1:+5148507 Msa1174100:CDS
CGAAGTATTGGCAGATCGTA+AGG 0.491306 8_1:+5148402 Msa1174100:CDS
CTGAACGGAAAAGGAAGGAA+TGG 0.495923 8_1:+5146799 Msa1174100:CDS
TTATGATGGAATTACCCTCT+TGG 0.498320 8_1:+5149815 Msa1174100:three_prime_UTR
AACTGGCTGCGAAGGAGAGA+TGG 0.499121 8_1:+5148312 Msa1174100:CDS
GGAAAGAGAGAATGGAGAAA+AGG 0.501934 8_1:+5146889 Msa1174100:CDS
AGAAAGTATAGCGGGGATAA+CGG 0.504106 8_1:+5146824 Msa1174100:CDS
TAGGTTCAAGGGGATAACTA+TGG 0.506219 8_1:+5148519 Msa1174100:CDS
AATTCGTAGTCTCGTTCAGC+AGG 0.506651 8_1:+5147016 Msa1174100:CDS
AGTTCTGAAGTGGGTTGTGA+TGG 0.510560 8_1:-5146678 None:intergenic
TGTATATATATTGTTTGAGT+CGG 0.511992 8_1:-5150164 None:intergenic
AGATACCGGGATTTGATAAG+TGG 0.516271 8_1:+5148350 Msa1174100:CDS
GTAAAACATATTCTTTGAGA+GGG 0.520534 8_1:+5150088 Msa1174100:three_prime_UTR
ATGTATTGCTATGCGGTGAA+TGG 0.524164 8_1:+5148259 Msa1174100:CDS
GAATGGGAAGAAAGTATAGC+GGG 0.525752 8_1:+5146816 Msa1174100:CDS
TTCTTGGAGAGTTCTGAAGT+GGG 0.527632 8_1:-5146687 None:intergenic
GGCGAAAGAGCAGAAGAAGA+AGG 0.534673 8_1:+5146773 Msa1174100:CDS
AGTTCCTGGAGACAAGGGAT+TGG 0.534892 8_1:+5149444 Msa1174100:CDS
AGAGGGTAATTCCATCATAA+GGG 0.537730 8_1:-5149812 None:intergenic
ATCTTCAAGAAATTGCCAAT+AGG 0.540462 8_1:-5148580 None:intergenic
TACTCAAGTTCCTGGAGACA+AGG 0.542557 8_1:+5149438 Msa1174100:CDS
GTTCTTGGAGAGTTCTGAAG+TGG 0.543048 8_1:-5146688 None:intergenic
ACAAGTTTCAAATCATTGAT+GGG 0.545384 8_1:+5149691 Msa1174100:three_prime_UTR
CTTTGGCTAACTGGCTGCGA+AGG 0.546041 8_1:+5148304 Msa1174100:CDS
GCTAGACAAACAACAAAGAT+GGG 0.546938 8_1:+5146722 Msa1174100:CDS
GAACAATGGTCCTCTCTACA+AGG 0.548940 8_1:-5150039 None:intergenic
TGTTTGCTTGCGCACACCAA+GGG 0.549981 8_1:-5149904 None:intergenic
AAACAATATATATACACTTG+TGG 0.550055 8_1:+5150171 Msa1174100:three_prime_UTR
TGATATAAGTATGATGATGT+TGG 0.550738 8_1:-5150356 None:intergenic
GTTGATAGGAATAGGTTCAA+GGG 0.551035 8_1:+5148508 Msa1174100:CDS
AGGTGTGACCTCCCTTATGA+TGG 0.555087 8_1:+5149801 Msa1174100:three_prime_UTR
TGGGTTTGGAGGTGGAACTG+TGG 0.555515 8_1:-5146652 None:intergenic
AGATCACAAGCTGATTCAGA+AGG 0.558701 8_1:+5149503 Msa1174100:CDS
TGAACGGAAAAGGAAGGAAT+GGG 0.562057 8_1:+5146800 Msa1174100:CDS
AACGGAGGAAGAGAGAGTGA+AGG 0.562848 8_1:+5146842 Msa1174100:CDS
ATGATCCACTTATCAAATCC+CGG 0.563131 8_1:-5148355 None:intergenic
ACAGTTATGTTATTTGACAA+TGG 0.565339 8_1:+5149867 Msa1174100:three_prime_UTR
TGCAAGATGTCAAATATCAT+AGG 0.566365 8_1:-5149932 None:intergenic
GTATCTAACGGCTGATTCAG+AGG 0.575403 8_1:+5148435 Msa1174100:CDS
GGATGATTTGGTGTATCTAA+CGG 0.578478 8_1:+5148423 Msa1174100:CDS
CCAAAGAACAACGTTCCAAG+AGG 0.578724 8_1:-5149830 None:intergenic
TTGATAGGAATAGGTTCAAG+GGG 0.582030 8_1:+5148509 Msa1174100:CDS
TGCAGATAATACTGTAGATG+AGG 0.589269 8_1:+5149529 Msa1174100:CDS
CACTATTGAGCCTTGTAGAG+AGG 0.590068 8_1:+5150029 Msa1174100:three_prime_UTR
GGAAACTGAACGGAAAAGGA+AGG 0.593141 8_1:+5146794 Msa1174100:CDS
ACACTTGTGGAATATTCTGT+AGG 0.601308 8_1:+5150184 Msa1174100:three_prime_UTR
TTACATATGTTAATGTATGT+CGG 0.607308 8_1:+5150311 Msa1174100:three_prime_UTR
CAGTTAGCCAAAGATGTGCA+GGG 0.609008 8_1:-5148294 None:intergenic
TGATAAGTGGATCATCGAGA+AGG 0.617301 8_1:+5148363 Msa1174100:CDS
AGAAGAAGAAGGAAACTGAA+CGG 0.617838 8_1:+5146784 Msa1174100:CDS
TAACTACAAGTATGCATGTG+TGG 0.620464 8_1:-5149995 None:intergenic
ATGGAGAAAGCACAAGAGCA+AGG 0.622205 8_1:+5148538 Msa1174100:CDS
TCTTTGCTGTTATCCCTCAG+AGG 0.622550 8_1:+5149477 Msa1174100:CDS
ACGAGACTACGAATTTCTTG+AGG 0.622869 8_1:-5147008 None:intergenic
ACTCAAGTTCCTGGAGACAA+GGG 0.624343 8_1:+5149439 Msa1174100:CDS
AAAGAAAGCAGAGAAGAAAG+CGG 0.626250 8_1:+5146749 Msa1174100:CDS
ATGTTTGCTTGCGCACACCA+AGG 0.627820 8_1:-5149905 None:intergenic
GAAAGCAGAGAAGAAAGCGG+CGG 0.640363 8_1:+5146752 Msa1174100:CDS
TAGTAGGAATCGTCGAACAA+TGG 0.644966 8_1:-5150053 None:intergenic
CAAAGAACAACGTTCCAAGA+GGG 0.647171 8_1:-5149829 None:intergenic
AGTTAGCCAAAGATGTGCAG+GGG 0.659607 8_1:-5148293 None:intergenic
GGGTAATTCCATCATAAGGG+AGG 0.673707 8_1:-5149809 None:intergenic
TCAGTATGTACCTATTGTTG+TGG 0.675940 8_1:+5149967 Msa1174100:three_prime_UTR
GGAATGGGAAGAAAGTATAG+CGG 0.683390 8_1:+5146815 Msa1174100:CDS
AAGTATAGCGGGGATAACGG+AGG 0.708957 8_1:+5146827 Msa1174100:CDS
AATGGGAAGAAAGTATAGCG+GGG 0.715050 8_1:+5146817 Msa1174100:CDS
GTAGATAATGTATTGCTATG+CGG 0.772427 8_1:+5148252 Msa1174100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTATTAATTATTAAT+AGG + chr8_1:5147132-5147151 Msa1174100:intron 0.0%
!! AGTGATTATATTTATATTAA+AGG + chr8_1:5147163-5147182 Msa1174100:intron 10.0%
!! ATTATATTTATATTAAAGGT+CGG + chr8_1:5147167-5147186 Msa1174100:intron 10.0%
!! AAAAATGAAATTCAAAATTA+GGG - chr8_1:5147665-5147684 None:intergenic 10.0%
!! AAAAAATGAAATTCAAAATT+AGG - chr8_1:5147666-5147685 None:intergenic 10.0%
!!! CATATATTTTTGTTATAAAT+TGG + chr8_1:5147955-5147974 Msa1174100:intron 10.0%
!!! TTTTTTTGTGAATTTTTTGA+TGG + chr8_1:5147051-5147070 Msa1174100:intron 15.0%
!!! TTTTTTGTGAATTTTTTGAT+GGG + chr8_1:5147052-5147071 Msa1174100:intron 15.0%
!!! CTTATTTTCATTAGTTTATA+TGG + chr8_1:5147299-5147318 Msa1174100:intron 15.0%
!!! TATTTTTGTTATAAATTGGT+AGG + chr8_1:5147959-5147978 Msa1174100:intron 15.0%
!!! ATTTTTGTTATAAATTGGTA+GGG + chr8_1:5147960-5147979 Msa1174100:intron 15.0%
!! TTGAACAAGATATATATAAT+TGG + chr8_1:5148478-5148497 Msa1174100:CDS 15.0%
!! TGATCTATGAAATTATAATT+TGG + chr8_1:5149029-5149048 Msa1174100:intron 15.0%
!!! TTTAGATTGTTTATGGTTTT+TGG + chr8_1:5147078-5147097 Msa1174100:intron 20.0%
!!! TTAGATTGTTTATGGTTTTT+GGG + chr8_1:5147079-5147098 Msa1174100:intron 20.0%
!!! CTATATTTTTGAATGTGTAT+TGG + chr8_1:5148085-5148104 Msa1174100:intron 20.0%
!!! TAATATTTCTTGTTGTGTAT+TGG + chr8_1:5148202-5148221 Msa1174100:intron 20.0%
!! TAATCAATTGAAAAAGATAC+CGG + chr8_1:5148336-5148355 Msa1174100:CDS 20.0%
!! AACAAGATATATATAATTGG+TGG + chr8_1:5148481-5148500 Msa1174100:CDS 20.0%
!!! AAGTTTGTATTTTGTATCAT+TGG + chr8_1:5148691-5148710 Msa1174100:intron 20.0%
!! GTACTATGTATAGATTATAT+TGG + chr8_1:5148725-5148744 Msa1174100:intron 20.0%
!!! TACTTGATAACACTTAAAAA+TGG + chr8_1:5149333-5149352 Msa1174100:intron 20.0%
!!! ACTTGATAACACTTAAAAAT+GGG + chr8_1:5149334-5149353 Msa1174100:intron 20.0%
!! TGTATATATATTGTTTGAGT+CGG - chr8_1:5150167-5150186 None:intergenic 20.0%
!! AAACAATATATATACACTTG+TGG + chr8_1:5150171-5150190 Msa1174100:three_prime_UTR 20.0%
!!! AATCTATTTAGGATGAATTT+TGG + chr8_1:5150207-5150226 Msa1174100:three_prime_UTR 20.0%
!!! ATCTATTTAGGATGAATTTT+GGG + chr8_1:5150208-5150227 Msa1174100:three_prime_UTR 20.0%
!! AACCTAAATAAAAAGGTTAA+TGG - chr8_1:5150235-5150254 None:intergenic 20.0%
!!! TTGAACTATTTTTGAGTTAA+GGG - chr8_1:5150267-5150286 None:intergenic 20.0%
!!! ATTGAACTATTTTTGAGTTA+AGG - chr8_1:5150268-5150287 None:intergenic 20.0%
!! TTACATATGTTAATGTATGT+CGG + chr8_1:5150311-5150330 Msa1174100:three_prime_UTR 20.0%
!!! TGCTTAAACTCTAAATTTTT+GGG - chr8_1:5150430-5150449 None:intergenic 20.0%
!!! TTGCTTAAACTCTAAATTTT+TGG - chr8_1:5150431-5150450 None:intergenic 20.0%
! TTGTTAAAGCGAAAGAATTA+GGG + chr8_1:5146943-5146962 Msa1174100:CDS 25.0%
!!! TGGGTTTTTTAGATTGTTTA+TGG + chr8_1:5147071-5147090 Msa1174100:intron 25.0%
! ATTTATATTAAAGGTCGGTT+TGG + chr8_1:5147172-5147191 Msa1174100:intron 25.0%
!!! AAAATTTCTATAGCGGATTA+CGG - chr8_1:5147731-5147750 None:intergenic 25.0%
! GAACTCAAAAATTTCTATAG+CGG - chr8_1:5147738-5147757 None:intergenic 25.0%
!! TTTTACAATCTCAACCAATT+TGG + chr8_1:5147924-5147943 Msa1174100:intron 25.0%
! TATATGAGAAACATCCAAAT+TGG - chr8_1:5147941-5147960 None:intergenic 25.0%
!! TGTATTGGTAAATGATAGAA+TGG + chr8_1:5148100-5148119 Msa1174100:intron 25.0%
! AATCAATTGAAAAAGATACC+GGG + chr8_1:5148337-5148356 Msa1174100:CDS 25.0%
!! TAAGTCTTATATCGAAGTAT+TGG + chr8_1:5148390-5148409 Msa1174100:CDS 25.0%
!!! TCTATCACATTAGTCTTTTT+TGG + chr8_1:5149052-5149071 Msa1174100:intron 25.0%
!! ATTGCTGATCTTCAATTTTA+TGG + chr8_1:5149251-5149270 Msa1174100:intron 25.0%
! AAGTAAAAAGAAATGTGTTG+AGG + chr8_1:5149604-5149623 Msa1174100:CDS 25.0%
! ACAAGTTTCAAATCATTGAT+GGG + chr8_1:5149691-5149710 Msa1174100:three_prime_UTR 25.0%
!! ACAGTTATGTTATTTGACAA+TGG + chr8_1:5149867-5149886 Msa1174100:three_prime_UTR 25.0%
! TGTAAAACATATTCTTTGAG+AGG + chr8_1:5150087-5150106 Msa1174100:three_prime_UTR 25.0%
!! GTAAAACATATTCTTTGAGA+GGG + chr8_1:5150088-5150107 Msa1174100:three_prime_UTR 25.0%
! TATTCTGTAGGAATCTATTT+AGG + chr8_1:5150196-5150215 Msa1174100:three_prime_UTR 25.0%
!!! GTCCATTAACCTTTTTATTT+AGG + chr8_1:5150230-5150249 Msa1174100:three_prime_UTR 25.0%
! CAAACTGAACCTAAATAAAA+AGG - chr8_1:5150242-5150261 None:intergenic 25.0%
!! TGATATAAGTATGATGATGT+TGG - chr8_1:5150359-5150378 None:intergenic 25.0%
!!! GGAGGAAAAAAAATTGATTT+TGG - chr8_1:5150409-5150428 None:intergenic 25.0%
!!! TTAAACTCTAAATTTTTGGG+AGG - chr8_1:5150427-5150446 None:intergenic 25.0%
CAAAACAACGACAATAGAAA+TGG + chr8_1:5146608-5146627 Msa1174100:exon 30.0%
AGAAAAATGAGAAGAAAGAG+AGG + chr8_1:5146919-5146938 Msa1174100:CDS 30.0%
CTTGTTAAAGCGAAAGAATT+AGG + chr8_1:5146942-5146961 Msa1174100:CDS 30.0%
AAACATTTGTGAGACTGTTT+AGG + chr8_1:5147225-5147244 Msa1174100:intron 30.0%
TGTAAATTAAGCTGTGAACA+AGG + chr8_1:5147406-5147425 Msa1174100:intron 30.0%
TTGTCAATAGCACACTATAA+CGG + chr8_1:5147474-5147493 Msa1174100:intron 30.0%
!! AAATTTCTATAGCGGATTAC+GGG - chr8_1:5147730-5147749 None:intergenic 30.0%
! ATGTATTTGATAACAGAGTC+AGG + chr8_1:5147818-5147837 Msa1174100:intron 30.0%
! TGTTGTGTATTGGTAAATGA+TGG + chr8_1:5148212-5148231 Msa1174100:intron 30.0%
! TGTATTGGTAAATGATGGAA+TGG + chr8_1:5148217-5148236 Msa1174100:intron 30.0%
GTAGATAATGTATTGCTATG+CGG + chr8_1:5148252-5148271 Msa1174100:intron 30.0%
!! TAATTGGTGGATTAGTTGAT+AGG + chr8_1:5148494-5148513 Msa1174100:CDS 30.0%
ATCTTCAAGAAATTGCCAAT+AGG - chr8_1:5148583-5148602 None:intergenic 30.0%
! TACAAACTTTTAGCAGTCAA+AGG - chr8_1:5148680-5148699 None:intergenic 30.0%
CAAAAGAGAGAGAGAAAAAA+TGG + chr8_1:5148847-5148866 Msa1174100:intron 30.0%
AATGTAAAAGAATCTACCGA+TGG - chr8_1:5148910-5148929 None:intergenic 30.0%
ACCATTTAGCTGAAATTACT+GGG + chr8_1:5148966-5148985 Msa1174100:intron 30.0%
TTCAGTCCTACATCTATAAA+GGG - chr8_1:5149188-5149207 None:intergenic 30.0%
ATTCAGTCCTACATCTATAA+AGG - chr8_1:5149189-5149208 None:intergenic 30.0%
TTATAGATGTAGGACTGAAT+TGG + chr8_1:5149189-5149208 Msa1174100:intron 30.0%
TAAATCACCAACTTAGTCTA+GGG - chr8_1:5149315-5149334 None:intergenic 30.0%
AAATGTCTTAGACACACAAA+TGG - chr8_1:5149365-5149384 None:intergenic 30.0%
TATTTCTCATTTGAGCTTTC+AGG + chr8_1:5149385-5149404 Msa1174100:intron 30.0%
TGAAGAAAAAGATGATCTAC+TGG + chr8_1:5149580-5149599 Msa1174100:CDS 30.0%
!! CATCAACAAGTTTGTTAGAA+GGG - chr8_1:5149634-5149653 None:intergenic 30.0%
!! TCATCAACAAGTTTGTTAGA+AGG - chr8_1:5149635-5149654 None:intergenic 30.0%
CACAAGTTTCAAATCATTGA+TGG + chr8_1:5149690-5149709 Msa1174100:three_prime_UTR 30.0%
TGCAAGATGTCAAATATCAT+AGG - chr8_1:5149935-5149954 None:intergenic 30.0%
ATGCATACTTGTAGTTAAGT+TGG + chr8_1:5150001-5150020 Msa1174100:three_prime_UTR 30.0%
!! TGTCGTTGTTTTGTTGAGAA+TGG - chr8_1:5146601-5146620 None:intergenic 35.0%
AGCTAGACAAACAACAAAGA+TGG + chr8_1:5146721-5146740 Msa1174100:CDS 35.0%
GCTAGACAAACAACAAAGAT+GGG + chr8_1:5146722-5146741 Msa1174100:CDS 35.0%
AAAGAAAGCAGAGAAGAAAG+CGG + chr8_1:5146749-5146768 Msa1174100:CDS 35.0%
AGAAGAAGAAGGAAACTGAA+CGG + chr8_1:5146784-5146803 Msa1174100:CDS 35.0%
TTGAAGCGAGAATGAGTTTA+CGG + chr8_1:5146868-5146887 Msa1174100:CDS 35.0%
ATGATCCACTTATCAAATCC+CGG - chr8_1:5148358-5148377 None:intergenic 35.0%
!! GGATGATTTGGTGTATCTAA+CGG + chr8_1:5148423-5148442 Msa1174100:CDS 35.0%
!! GTGGATTAGTTGATAGGAAT+AGG + chr8_1:5148500-5148519 Msa1174100:CDS 35.0%
!! AGTTGATAGGAATAGGTTCA+AGG + chr8_1:5148507-5148526 Msa1174100:CDS 35.0%
! GTTGATAGGAATAGGTTCAA+GGG + chr8_1:5148508-5148527 Msa1174100:CDS 35.0%
TTGATAGGAATAGGTTCAAG+GGG + chr8_1:5148509-5148528 Msa1174100:CDS 35.0%
CAAACAGCTAAACTTCCTAT+TGG + chr8_1:5148565-5148584 Msa1174100:CDS 35.0%
TAACCCTCTTGTATTTGCTT+TGG + chr8_1:5148638-5148657 Msa1174100:intron 35.0%
AACCCTCTTGTATTTGCTTT+GGG + chr8_1:5148639-5148658 Msa1174100:intron 35.0%
AGAGACGATTGAGAGAAAAT+AGG + chr8_1:5148805-5148824 Msa1174100:intron 35.0%
GAGACGATTGAGAGAAAATA+GGG + chr8_1:5148806-5148825 Msa1174100:intron 35.0%
AAGAGAGAGAGAAAAAATGG+AGG + chr8_1:5148850-5148869 Msa1174100:intron 35.0%
AGAGAGAGAGAAAAAATGGA+GGG + chr8_1:5148851-5148870 Msa1174100:intron 35.0%
CACCATTTAGCTGAAATTAC+TGG + chr8_1:5148965-5148984 Msa1174100:intron 35.0%
CCATTTAGCTGAAATTACTG+GGG + chr8_1:5148967-5148986 Msa1174100:intron 35.0%
ATGTGTCAAAGTGACTAATG+TGG + chr8_1:5149097-5149116 Msa1174100:intron 35.0%
TTGAAGATCAGCAATCACAT+TGG - chr8_1:5149246-5149265 None:intergenic 35.0%
TAAATTGCCCTAGACTAAGT+TGG + chr8_1:5149305-5149324 Msa1174100:intron 35.0%
GTAAATCACCAACTTAGTCT+AGG - chr8_1:5149316-5149335 None:intergenic 35.0%
AGAAATACTACTCAAGTTCC+TGG + chr8_1:5149430-5149449 Msa1174100:CDS 35.0%
TGCAGATAATACTGTAGATG+AGG + chr8_1:5149529-5149548 Msa1174100:CDS 35.0%
!!! GTTTTTTGACAACTTGTGAC+CGG + chr8_1:5149768-5149787 Msa1174100:three_prime_UTR 35.0%
AGAGGGTAATTCCATCATAA+GGG - chr8_1:5149815-5149834 None:intergenic 35.0%
AAGAGGGTAATTCCATCATA+AGG - chr8_1:5149816-5149835 None:intergenic 35.0%
! TTATGATGGAATTACCCTCT+TGG + chr8_1:5149815-5149834 Msa1174100:three_prime_UTR 35.0%
! GAACGTTGTTCTTTGGATTT+TGG + chr8_1:5149837-5149856 Msa1174100:three_prime_UTR 35.0%
TCAGTATGTACCTATTGTTG+TGG + chr8_1:5149967-5149986 Msa1174100:three_prime_UTR 35.0%
TAACTACAAGTATGCATGTG+TGG - chr8_1:5149998-5150017 None:intergenic 35.0%
TTACAAGAACCGAACATAGT+AGG - chr8_1:5150072-5150091 None:intergenic 35.0%
! TAATTTTCGCTTGAGTGTTC+AGG - chr8_1:5150135-5150154 None:intergenic 35.0%
ACACTTGTGGAATATTCTGT+AGG + chr8_1:5150184-5150203 Msa1174100:three_prime_UTR 35.0%
!! GTTTTGTTGAGAATGGAGAG+AGG - chr8_1:5146594-5146613 None:intergenic 40.0%
!! TTCTTGGAGAGTTCTGAAGT+GGG - chr8_1:5146690-5146709 None:intergenic 40.0%
AGAAGGAAACTGAACGGAAA+AGG + chr8_1:5146790-5146809 Msa1174100:CDS 40.0%
TGAACGGAAAAGGAAGGAAT+GGG + chr8_1:5146800-5146819 Msa1174100:CDS 40.0%
! GGAATGGGAAGAAAGTATAG+CGG + chr8_1:5146815-5146834 Msa1174100:CDS 40.0%
! GAATGGGAAGAAAGTATAGC+GGG + chr8_1:5146816-5146835 Msa1174100:CDS 40.0%
! AATGGGAAGAAAGTATAGCG+GGG + chr8_1:5146817-5146836 Msa1174100:CDS 40.0%
! AGAAAGTATAGCGGGGATAA+CGG + chr8_1:5146824-5146843 Msa1174100:CDS 40.0%
GAGTTTACGGAAAGAGAGAA+TGG + chr8_1:5146881-5146900 Msa1174100:CDS 40.0%
GGAAAGAGAGAATGGAGAAA+AGG + chr8_1:5146889-5146908 Msa1174100:CDS 40.0%
AGAGAGAATGGAGAAAAGGT+TGG + chr8_1:5146893-5146912 Msa1174100:CDS 40.0%
ACGAGACTACGAATTTCTTG+AGG - chr8_1:5147011-5147030 None:intergenic 40.0%
! AAGGCCTAAGTTGAGAATGT+TGG + chr8_1:5147425-5147444 Msa1174100:intron 40.0%
GCAACCAACATTCTCAACTT+AGG - chr8_1:5147432-5147451 None:intergenic 40.0%
CACTATAAGTGGTTGAAGAG+CGG + chr8_1:5147563-5147582 Msa1174100:intron 40.0%
TGGCTGCTATTGCAAACTTT+GGG + chr8_1:5147624-5147643 Msa1174100:intron 40.0%
ATGTATTGCTATGCGGTGAA+TGG + chr8_1:5148259-5148278 Msa1174100:CDS 40.0%
AGATACCGGGATTTGATAAG+TGG + chr8_1:5148350-5148369 Msa1174100:CDS 40.0%
TGATAAGTGGATCATCGAGA+AGG + chr8_1:5148363-5148382 Msa1174100:CDS 40.0%
TAGGTTCAAGGGGATAACTA+TGG + chr8_1:5148519-5148538 Msa1174100:CDS 40.0%
!! CTTGAAGATGTCTAGTTCTC+AGG + chr8_1:5148594-5148613 Msa1174100:CDS 40.0%
AGCCCAAAGCAAATACAAGA+GGG - chr8_1:5148644-5148663 None:intergenic 40.0%
ATTGGATCATCTTCTGCAAG+TGG + chr8_1:5148743-5148762 Msa1174100:intron 40.0%
GAGAGAGAGAAAAAATGGAG+GGG + chr8_1:5148852-5148871 Msa1174100:intron 40.0%
AGAGAGAGAAAAAATGGAGG+GGG + chr8_1:5148853-5148872 Msa1174100:intron 40.0%
AAAGAATCTACCGATGGATC+CGG - chr8_1:5148904-5148923 None:intergenic 40.0%
CCCCAGTAATTTCAGCTAAA+TGG - chr8_1:5148970-5148989 None:intergenic 40.0%
CTATAAAGGGTCGCTCAATT+TGG - chr8_1:5149175-5149194 None:intergenic 40.0%
! CTTGTGATCTTTTCCTCTGA+GGG - chr8_1:5149493-5149512 None:intergenic 40.0%
! AGATCACAAGCTGATTCAGA+AGG + chr8_1:5149503-5149522 Msa1174100:CDS 40.0%
CAAAGAACAACGTTCCAAGA+GGG - chr8_1:5149832-5149851 None:intergenic 40.0%
GGTGAACGAAAAATATCCCT+TGG + chr8_1:5149888-5149907 Msa1174100:three_prime_UTR 40.0%
TAGTAGGAATCGTCGAACAA+TGG - chr8_1:5150056-5150075 None:intergenic 40.0%
TCGACGATTCCTACTATGTT+CGG + chr8_1:5150060-5150079 Msa1174100:three_prime_UTR 40.0%
!! AAGTGGGTTGTGATGGTTCT+GGG - chr8_1:5146674-5146693 None:intergenic 45.0%
!! AGTTCTGAAGTGGGTTGTGA+TGG - chr8_1:5146681-5146700 None:intergenic 45.0%
!! GTTCTTGGAGAGTTCTGAAG+TGG - chr8_1:5146691-5146710 None:intergenic 45.0%
TAGCTTCTTCTTCGCGTTCT+TGG - chr8_1:5146706-5146725 None:intergenic 45.0%
GGAAACTGAACGGAAAAGGA+AGG + chr8_1:5146794-5146813 Msa1174100:CDS 45.0%
CTGAACGGAAAAGGAAGGAA+TGG + chr8_1:5146799-5146818 Msa1174100:CDS 45.0%
AATTCGTAGTCTCGTTCAGC+AGG + chr8_1:5147016-5147035 Msa1174100:CDS 45.0%
AGCACACTATAACGGTGTAG+CGG + chr8_1:5147482-5147501 Msa1174100:intron 45.0%
ACTGTTGCTGCTACTCTCAA+TGG - chr8_1:5147540-5147559 None:intergenic 45.0%
ATTGAGAGTAGCAGCAACAG+TGG + chr8_1:5147539-5147558 Msa1174100:intron 45.0%
CGCTCTTCAACCACTTATAG+TGG - chr8_1:5147565-5147584 None:intergenic 45.0%
GCGTAATCCCACTACTATAG+CGG + chr8_1:5147596-5147615 Msa1174100:intron 45.0%
ATCCCACTACTATAGCGGTT+TGG + chr8_1:5147601-5147620 Msa1174100:intron 45.0%
CACCAAACCGCTATAGTAGT+GGG - chr8_1:5147606-5147625 None:intergenic 45.0%
GTGGCTGCTATTGCAAACTT+TGG + chr8_1:5147623-5147642 Msa1174100:intron 45.0%
GGCTGCTATTGCAAACTTTG+GGG + chr8_1:5147625-5147644 Msa1174100:intron 45.0%
AACAGAGTCAGGCAAAGCAA+AGG + chr8_1:5147829-5147848 Msa1174100:intron 45.0%
AGTTAGCCAAAGATGTGCAG+GGG - chr8_1:5148296-5148315 None:intergenic 45.0%
CAGTTAGCCAAAGATGTGCA+GGG - chr8_1:5148297-5148316 None:intergenic 45.0%
!! CGAAGTATTGGCAGATCGTA+AGG + chr8_1:5148402-5148421 Msa1174100:CDS 45.0%
GGCAGATCGTAAGGATGATT+TGG + chr8_1:5148411-5148430 Msa1174100:CDS 45.0%
! GTATCTAACGGCTGATTCAG+AGG + chr8_1:5148435-5148454 Msa1174100:CDS 45.0%
! ATGGAGAAAGCACAAGAGCA+AGG + chr8_1:5148538-5148557 Msa1174100:CDS 45.0%
CAGCCCAAAGCAAATACAAG+AGG - chr8_1:5148645-5148664 None:intergenic 45.0%
GAGAGAGAAAAAATGGAGGG+GGG + chr8_1:5148854-5148873 Msa1174100:intron 45.0%
GGTTGGAGAGTGATCCTATA+GGG + chr8_1:5148875-5148894 Msa1174100:intron 45.0%
GTTGGAGAGTGATCCTATAG+GGG + chr8_1:5148876-5148895 Msa1174100:intron 45.0%
GAGCGACCCTTTATAGATGT+AGG + chr8_1:5149179-5149198 Msa1174100:intron 45.0%
TACTCAAGTTCCTGGAGACA+AGG + chr8_1:5149438-5149457 Msa1174100:CDS 45.0%
ACTCAAGTTCCTGGAGACAA+GGG + chr8_1:5149439-5149458 Msa1174100:CDS 45.0%
! TTTTCCAATCCCTTGTCTCC+AGG - chr8_1:5149451-5149470 None:intergenic 45.0%
!! TCTTTGCTGTTATCCCTCAG+AGG + chr8_1:5149477-5149496 Msa1174100:CDS 45.0%
! GCTTGTGATCTTTTCCTCTG+AGG - chr8_1:5149494-5149513 None:intergenic 45.0%
TGAAGTGTAGAGCGTAGAAC+TGG + chr8_1:5149652-5149671 Msa1174100:exon 45.0%
GGGTAATTCCATCATAAGGG+AGG - chr8_1:5149812-5149831 None:intergenic 45.0%
CCAAAGAACAACGTTCCAAG+AGG - chr8_1:5149833-5149852 None:intergenic 45.0%
CCTCTTGGAACGTTGTTCTT+TGG + chr8_1:5149830-5149849 Msa1174100:three_prime_UTR 45.0%
! TGTGGCTTTGCCACAACAAT+AGG - chr8_1:5149980-5149999 None:intergenic 45.0%
! CACTATTGAGCCTTGTAGAG+AGG + chr8_1:5150029-5150048 Msa1174100:three_prime_UTR 45.0%
GAACAATGGTCCTCTCTACA+AGG - chr8_1:5150042-5150061 None:intergenic 45.0%
! AACTGTGGATTCGGGTTCGT+GGG - chr8_1:5146640-5146659 None:intergenic 50.0%
TGGAGGTGGAACTGTGGATT+CGG - chr8_1:5146649-5146668 None:intergenic 50.0%
!! TGTGATGGTTCTGGGTTTGG+AGG - chr8_1:5146666-5146685 None:intergenic 50.0%
!! GGTTGTGATGGTTCTGGGTT+TGG - chr8_1:5146669-5146688 None:intergenic 50.0%
!! GAAGTGGGTTGTGATGGTTC+TGG - chr8_1:5146675-5146694 None:intergenic 50.0%
GAAAGCAGAGAAGAAAGCGG+CGG + chr8_1:5146752-5146771 Msa1174100:CDS 50.0%
GGCGAAAGAGCAGAAGAAGA+AGG + chr8_1:5146773-5146792 Msa1174100:CDS 50.0%
! AAGTATAGCGGGGATAACGG+AGG + chr8_1:5146827-5146846 Msa1174100:CDS 50.0%
AACGGAGGAAGAGAGAGTGA+AGG + chr8_1:5146842-5146861 Msa1174100:CDS 50.0%
TACTCTCAATGGCACTTCGC+GGG - chr8_1:5147529-5147548 None:intergenic 50.0%
CTACTCTCAATGGCACTTCG+CGG - chr8_1:5147530-5147549 None:intergenic 50.0%
GCAACAGTGGCCACTATAAG+TGG + chr8_1:5147552-5147571 Msa1174100:intron 50.0%
!! GTTGAAGAGCGGTGCTATCA+AGG + chr8_1:5147574-5147593 Msa1174100:intron 50.0%
CCACCAAACCGCTATAGTAG+TGG - chr8_1:5147607-5147626 None:intergenic 50.0%
! CCACTACTATAGCGGTTTGG+TGG + chr8_1:5147604-5147623 Msa1174100:intron 50.0%
GTCAGGCAAAGCAAAGGACT+TGG + chr8_1:5147835-5147854 Msa1174100:intron 50.0%
GTGAAACCCCTGCACATCTT+TGG + chr8_1:5148287-5148306 Msa1174100:CDS 50.0%
CCAGTTAGCCAAAGATGTGC+AGG - chr8_1:5148298-5148317 None:intergenic 50.0%
CCTGCACATCTTTGGCTAAC+TGG + chr8_1:5148295-5148314 Msa1174100:CDS 50.0%
ACTTGTGTTTCCAGCTGCAG+TGG - chr8_1:5148777-5148796 None:intergenic 50.0%
GAGAAAAAATGGAGGGGGGT+TGG + chr8_1:5148858-5148877 Msa1174100:intron 50.0%
GGGTTGGAGAGTGATCCTAT+AGG + chr8_1:5148874-5148893 Msa1174100:intron 50.0%
GAGTGATCCTATAGGGGATC+CGG + chr8_1:5148882-5148901 Msa1174100:intron 50.0%
TATAGGGGATCCGGATCCAT+CGG + chr8_1:5148891-5148910 Msa1174100:intron 50.0%
AGTTCCTGGAGACAAGGGAT+TGG + chr8_1:5149444-5149463 Msa1174100:CDS 50.0%
! TTGTGACCGGATTTTCTGCG+AGG + chr8_1:5149781-5149800 Msa1174100:three_prime_UTR 50.0%
GTCACACCTCGCAGAAAATC+CGG - chr8_1:5149790-5149809 None:intergenic 50.0%
AGGTGTGACCTCCCTTATGA+TGG + chr8_1:5149801-5149820 Msa1174100:three_prime_UTR 50.0%
TGTTTGCTTGCGCACACCAA+GGG - chr8_1:5149907-5149926 None:intergenic 50.0%
ATGTTTGCTTGCGCACACCA+AGG - chr8_1:5149908-5149927 None:intergenic 50.0%
! GAACTGTGGATTCGGGTTCG+TGG - chr8_1:5146641-5146660 None:intergenic 55.0%
GGAGGTGGAACTGTGGATTC+GGG - chr8_1:5146648-5146667 None:intergenic 55.0%
TGGGTTTGGAGGTGGAACTG+TGG - chr8_1:5146655-5146674 None:intergenic 55.0%
!! GATGGTTCTGGGTTTGGAGG+TGG - chr8_1:5146663-5146682 None:intergenic 55.0%
CTTTGGCTAACTGGCTGCGA+AGG + chr8_1:5148304-5148323 Msa1174100:CDS 55.0%
AACTGGCTGCGAAGGAGAGA+TGG + chr8_1:5148312-5148331 Msa1174100:CDS 55.0%
GATGGATCCGGATCCCCTAT+AGG - chr8_1:5148892-5148911 None:intergenic 55.0%
GGACCATGGCGTAGTAGTGG+AGG - chr8_1:5147508-5147527 None:intergenic 60.0%
AATGGCACTTCGCGGGACCA+TGG - chr8_1:5147522-5147541 None:intergenic 60.0%
!! GGAAGTGCTTCCACTGCAGC+TGG + chr8_1:5148764-5148783 Msa1174100:intron 60.0%
! GTGGATTCGGGTTCGTGGGC+TGG - chr8_1:5146636-5146655 None:intergenic 65.0%
CGGCCTCCACTACTACGCCA+TGG + chr8_1:5147502-5147521 Msa1174100:intron 65.0%
GCGGGACCATGGCGTAGTAG+TGG - chr8_1:5147511-5147530 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5146566 5150451 5146566 ID=Msa1174100;Name=Msa1174100
chr8_1 mRNA 5146566 5150451 5146566 ID=Msa1174100-mRNA-1;Parent=Msa1174100;Name=Msa1174100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=61|1|1|1|1|1|3|790|341
chr8_1 exon 5146566 5147037 5146566 ID=Msa1174100-mRNA-1:exon:1689;Parent=Msa1174100-mRNA-1
chr8_1 exon 5148256 5148615 5148256 ID=Msa1174100-mRNA-1:exon:1690;Parent=Msa1174100-mRNA-1
chr8_1 exon 5149407 5150451 5149407 ID=Msa1174100-mRNA-1:exon:1691;Parent=Msa1174100-mRNA-1
chr8_1 five_prime_UTR 5146566 5146626 5146566 ID=Msa1174100-mRNA-1:five_prime_utr;Parent=Msa1174100-mRNA-1
chr8_1 CDS 5146627 5147037 5146627 ID=Msa1174100-mRNA-1:cds;Parent=Msa1174100-mRNA-1
chr8_1 CDS 5148256 5148615 5148256 ID=Msa1174100-mRNA-1:cds;Parent=Msa1174100-mRNA-1
chr8_1 CDS 5149407 5149661 5149407 ID=Msa1174100-mRNA-1:cds;Parent=Msa1174100-mRNA-1
chr8_1 three_prime_UTR 5149662 5150451 5149662 ID=Msa1174100-mRNA-1:three_prime_utr;Parent=Msa1174100-mRNA-1
Gene Sequence

>Msa1174100

ATGGAACCAGCCCACGAACCCGAATCCACAGTTCCACCTCCAAACCCAGAACCATCACAACCCACTTCAGAACTCTCCAAGAACGCGAAGAAGAAGCTAGACAAACAACAAAGATGGGAAGCAAAGAAAGCAGAGAAGAAAGCGGCGGCGAAAGAGCAGAAGAAGAAGGAAACTGAACGGAAAAGGAAGGAATGGGAAGAAAGTATAGCGGGGATAACGGAGGAAGAGAGAGTGAAGGTGATTGAAGCGAGAATGAGTTTACGGAAAGAGAGAATGGAGAAAAGGTTGGAAGAGAAAAATGAGAAGAAAGAGAGGCTTGTTAAAGCGAAAGAATTAGGGCAGAATGTTGTTGTTGATGTTGAATTTTCTCATCTTATGACTCCTCAAGAAATTCGTAGTCTCGTTCAGCAGATAATGTATTGCTATGCGGTGAATGGAAGATGTGAAACCCCTGCACATCTTTGGCTAACTGGCTGCGAAGGAGAGATGGATAATCAATTGAAAAAGATACCGGGATTTGATAAGTGGATCATCGAGAAGGAAAATAAGTCTTATATCGAAGTATTGGCAGATCGTAAGGATGATTTGGTGTATCTAACGGCTGATTCAGAGGATGTTCTTGAAGAGCTTGATTTGAACAAGATATATATAATTGGTGGATTAGTTGATAGGAATAGGTTCAAGGGGATAACTATGGAGAAAGCACAAGAGCAAGGAATTCAAACAGCTAAACTTCCTATTGGCAATTTCTTGAAGATGTCTAGTTCTCAGGTTCTTACTGTGAATCAAGTTGTAGAAATACTACTCAAGTTCCTGGAGACAAGGGATTGGAAAACTTCTTTCTTTGCTGTTATCCCTCAGAGGAAAAGATCACAAGCTGATTCAGAAGGAAATGCAGATAATACTGTAGATGAGGACAGAGATGACGATGAAGAGCAAGAGTGTGAAGAAAAAGATGATCTACTGGCAAGTAAAAAGAAATGTGTTGAGGAGATCCCTTCTAACAAACTTGTTGATGAAGTGTAG

Protein sequence

>Msa1174100

MEPAHEPESTVPPPNPEPSQPTSELSKNAKKKLDKQQRWEAKKAEKKAAAKEQKKKETERKRKEWEESIAGITEEERVKVIEARMSLRKERMEKRLEEKNEKKERLVKAKELGQNVVVDVEFSHLMTPQEIRSLVQQIMYCYAVNGRCETPAHLWLTGCEGEMDNQLKKIPGFDKWIIEKENKSYIEVLADRKDDLVYLTADSEDVLEELDLNKIYIIGGLVDRNRFKGITMEKAQEQGIQTAKLPIGNFLKMSSSQVLTVNQVVEILLKFLETRDWKTSFFAVIPQRKRSQADSEGNADNTVDEDRDDDEEQECEEKDDLLASKKKCVEEIPSNKLVDEV*