AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0273650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0273650 MtrunA17_Chr2g0283871 97.115 312 9 0 1 312 1 312 0.0 629
Msa0273650 MtrunA17_Chr4g0041151 50.000 318 106 7 11 311 19 300 2.21e-80 246
Msa0273650 MtrunA17_Chr8g0344681 40.728 302 142 10 19 309 64 339 5.66e-53 177
Msa0273650 MtrunA17_Chr2g0325841 32.075 371 162 9 11 299 34 396 1.19e-31 125
Msa0273650 MtrunA17_Chr1g0179531 37.624 101 57 3 23 122 133 228 8.26e-17 80.9
Msa0273650 MtrunA17_Chr6g0485241 36.170 94 55 2 23 115 130 219 2.48e-16 79.0
Msa0273650 MtrunA17_Chr1g0164461 36.735 98 55 2 18 115 33 123 3.25e-14 70.1
Msa0273650 MtrunA17_Chr3g0082261 37.755 98 54 2 18 115 33 123 7.18e-14 71.2
Msa0273650 MtrunA17_Chr2g0331931 36.752 117 67 3 14 128 263 374 1.70e-12 67.8
Msa0273650 MtrunA17_Chr4g0066271 31.915 94 62 2 22 114 116 208 3.43e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0273650 AT3G58630.2 42.857 336 131 9 3 313 2 301 5.26e-67 212
Msa0273650 AT3G58630.1 42.857 336 131 9 3 313 2 301 9.62e-67 212
Msa0273650 AT3G14180.1 33.333 345 157 10 19 305 80 409 3.31e-48 167
Msa0273650 AT3G11100.1 37.500 296 119 7 19 314 18 247 2.56e-46 157
Msa0273650 AT5G05550.3 38.176 296 112 8 19 314 20 244 1.03e-45 155
Msa0273650 AT5G05550.1 38.176 296 112 8 19 314 20 244 1.44e-45 155
Msa0273650 AT5G05550.2 39.446 289 104 9 19 307 20 237 1.44e-44 152
Msa0273650 AT1G54060.1 51.020 98 44 2 19 116 90 183 1.99e-21 94.0
Msa0273650 AT3G54390.1 27.451 306 168 12 5 303 16 274 2.59e-20 89.7
Msa0273650 AT3G54390.2 27.451 306 168 12 5 303 32 290 3.94e-20 89.4
Msa0273650 AT3G10030.2 35.433 127 74 3 23 145 161 283 9.24e-20 90.1
Msa0273650 AT3G10030.1 35.433 127 74 3 23 145 161 283 9.59e-20 90.1
Msa0273650 AT3G24490.1 37.634 93 53 2 23 115 90 177 4.16e-16 78.2
Msa0273650 AT2G44730.1 22.684 313 197 10 13 300 56 348 4.91e-13 69.3

Find 125 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTACTTAAGCCTAATT+TGG 0.138542 2_3:-5255245 Msa0273650:three_prime_UTR
AGAGAGAATGAGAAGAAATT+AGG 0.167345 2_3:+5259930 None:intergenic
AATTTATCGAGGAGTAATTT+TGG 0.217786 2_3:-5255324 Msa0273650:three_prime_UTR
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2_3:-5259018 Msa0273650:CDS
AATCCGGCATCGGAGAAATT+AGG 0.223362 2_3:+5259891 None:intergenic
GGTACGGTCGCCGGTGTATT+GGG 0.229132 2_3:+5260008 None:intergenic
CATCGGAAATTTGCTAATTC+TGG 0.236718 2_3:-5259446 Msa0273650:CDS
AGTTGCTGAATTAATTTATA+AGG 0.256607 2_3:+5255264 None:intergenic
CGGTACGGTCGCCGGTGTAT+TGG 0.291738 2_3:+5260007 None:intergenic
ATCGGAACACTCTAATGTTT+TGG 0.311243 2_3:-5255408 Msa0273650:three_prime_UTR
GAGAGAATGAGAAGAAATTA+GGG 0.314885 2_3:+5259931 None:intergenic
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2_3:-5259078 Msa0273650:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2_3:+5259530 None:intergenic
GAAGTGGATGAAGGGGATAA+AGG 0.329017 2_3:-5259176 Msa0273650:CDS
GTAGAGGAAGAGGAAGGGAG+GGG 0.346774 2_3:-5259203 Msa0273650:CDS
AAGTAGAGGAAGAGGAAGGG+AGG 0.369131 2_3:-5259205 Msa0273650:CDS
CACTGAAACCGTTGCCCGCT+TGG 0.374209 2_3:+5255437 None:intergenic
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2_3:-5259795 Msa0273650:CDS
GTTGCTGAATTAATTTATAA+GGG 0.378967 2_3:+5255265 None:intergenic
AAGTGGATGAAGGGGATAAA+GGG 0.379670 2_3:-5259175 Msa0273650:CDS
TCTGTGTGGCAGCCCAAATT+AGG 0.380646 2_3:+5255232 None:intergenic
GACCAACAATCCTCGCGAAC+GGG 0.390355 2_3:+5259830 None:intergenic
GCATCGGAGAAATTAGGGTT+AGG 0.393814 2_3:+5259897 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2_3:-5259796 Msa0273650:CDS
AGAGGTGGAAGTAGAGGAAG+AGG 0.405371 2_3:-5259213 Msa0273650:CDS
GGAGGAAGTTGAGGAGGAAG+AGG 0.407734 2_3:-5259231 Msa0273650:CDS
GTGGAATGTACCGCAATTGC+AGG 0.408758 2_3:+5259410 None:intergenic
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2_3:-5259131 Msa0273650:CDS
ATCCGGCATCGGAGAAATTA+GGG 0.411785 2_3:+5259892 None:intergenic
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2_3:-5258972 Msa0273650:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2_3:-5259507 Msa0273650:CDS
AACCCTAATTTCTCCGATGC+CGG 0.432438 2_3:-5259894 Msa0273650:exon
TAGAGGAAGAGGAAGGGAGG+GGG 0.434612 2_3:-5259202 Msa0273650:CDS
AGCTGCAGCCGCTGCTGCTG+CGG 0.440024 2_3:-5259288 Msa0273650:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2_3:+5259875 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2_3:-5258963 Msa0273650:CDS
GGGGAGTGAAGTGGATGAAG+GGG 0.444075 2_3:-5259183 Msa0273650:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2_3:-5259745 Msa0273650:CDS
AAGGGGATAAAGGGAGAGAA+GGG 0.448917 2_3:-5259166 Msa0273650:CDS
GAGAGAAGGGATGAAGAGGT+TGG 0.450498 2_3:-5259153 Msa0273650:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2_3:-5259832 Msa0273650:CDS
GGCGGTGACACCGTCGCCTC+CGG 0.452209 2_3:-5259489 Msa0273650:CDS
AAGATATAGAAAAGGTTAAA+CGG 0.453825 2_3:+5259972 None:intergenic
ATCAGCTTCCGCAGCAGCAG+CGG 0.459138 2_3:+5259280 None:intergenic
GTGGAAGTAGAGGAAGAGGA+AGG 0.466313 2_3:-5259209 Msa0273650:CDS
TGATGAGGTGGAGGAAGTTG+AGG 0.467170 2_3:-5259240 Msa0273650:CDS
AGTAGAGGAAGAGGAAGGGA+GGG 0.467532 2_3:-5259204 Msa0273650:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2_3:-5259513 Msa0273650:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2_3:-5259710 Msa0273650:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2_3:-5259605 Msa0273650:CDS
ACTGCTACGGTGATGGATGA+TGG 0.479955 2_3:-5259338 Msa0273650:CDS
GGAGGAAGAGGTGGAAGTAG+AGG 0.482006 2_3:-5259219 Msa0273650:CDS
GTACGGTCGCCGGTGTATTG+GGG 0.487704 2_3:+5260009 None:intergenic
GAAGGGGATAAAGGGAGAGA+AGG 0.489329 2_3:-5259167 Msa0273650:CDS
GGAAGTTGAGGAGGAAGAGG+TGG 0.492049 2_3:-5259228 Msa0273650:CDS
CATCGGAGAAATTAGGGTTA+GGG 0.496578 2_3:+5259898 None:intergenic
AAGGGAGAGAAGGGATGAAG+AGG 0.497380 2_3:-5259157 Msa0273650:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2_3:-5259000 Msa0273650:CDS
TGCTGCTGCGGAAGCTGATG+AGG 0.500517 2_3:-5259276 Msa0273650:CDS
TGGAAGTAGAGGAAGAGGAA+GGG 0.505354 2_3:-5259208 Msa0273650:CDS
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2_3:-5259443 Msa0273650:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2_3:-5259463 Msa0273650:CDS
CGTGGCTGCGGCTACTGCTA+CGG 0.507470 2_3:-5259351 Msa0273650:CDS
ACTGTACTTAAGCCTAATTT+GGG 0.513594 2_3:-5255244 Msa0273650:three_prime_UTR
TGCGGCTACTGCTACGGTGA+TGG 0.518450 2_3:-5259345 Msa0273650:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.524853 2_3:+5259494 None:intergenic
TACGGTCGCCGGTGTATTGG+GGG 0.535195 2_3:+5260010 None:intergenic
GAATTATTCTGCCGTGGCTG+CGG 0.538446 2_3:-5259363 Msa0273650:CDS
TGAGGTGGAGGAAGTTGAGG+AGG 0.539115 2_3:-5259237 Msa0273650:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2_3:-5259111 Msa0273650:CDS
CTGCTACGGTGATGGATGAT+GGG 0.544392 2_3:-5259337 Msa0273650:CDS
TGATTACACGGTACGGTCGC+CGG 0.549018 2_3:+5259999 None:intergenic
GGAAGAGCCACCGGAGGCGA+CGG 0.553904 2_3:+5259479 None:intergenic
GCGGGCAACGGTTTCAGTGA+TGG 0.554914 2_3:-5255433 Msa0273650:three_prime_UTR
TGTATAATAGCTAGCCAAGC+GGG 0.557047 2_3:-5255451 Msa0273650:three_prime_UTR
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2_3:+5259835 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2_3:-5259787 Msa0273650:CDS
CGTAGCAGTAGCCGCAGCCA+CGG 0.576525 2_3:+5259352 None:intergenic
ACGGTTTCAGTGATGGTGAT+CGG 0.576591 2_3:-5255426 Msa0273650:three_prime_UTR
TGACCAACAATCCTCGCGAA+CGG 0.577799 2_3:+5259829 None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG 0.579375 2_3:-5259034 Msa0273650:CDS
TTAAACGGCGTGTGATTACA+CGG 0.580718 2_3:+5259987 None:intergenic
GGAATCAACGGAAGAGCCAC+CGG 0.582868 2_3:+5259470 None:intergenic
TGATGAGGATGATGAGGTGG+AGG 0.584183 2_3:-5259249 Msa0273650:CDS
ATCTCACCATTAGACCCAGA+TGG 0.584691 2_3:+5258957 None:intergenic
TTATTCATCACCTGCAATTG+CGG 0.591019 2_3:-5259420 Msa0273650:CDS
ATAGCTAGCCAAGCGGGCAA+CGG 0.600269 2_3:-5255445 Msa0273650:three_prime_UTR
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2_3:+5259845 None:intergenic
GCAGAATAATTCCTCTTCTG+AGG 0.603793 2_3:+5259374 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2_3:-5259067 Msa0273650:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2_3:+5259848 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2_3:+5259793 None:intergenic
TTCAGCTGATACTGTCATGA+GGG 0.607610 2_3:-5255360 Msa0273650:three_prime_UTR
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2_3:-5259840 Msa0273650:CDS
TGATGATGAGGATGATGAGG+TGG 0.613041 2_3:-5259252 Msa0273650:CDS
GAAGAGGAATTATTCTGCCG+TGG 0.613185 2_3:-5259369 Msa0273650:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2_3:+5259881 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2_3:-5259084 Msa0273650:CDS
GGTGACACCGTCGCCTCCGG+TGG 0.615400 2_3:-5259486 Msa0273650:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2_3:+5259458 None:intergenic
AGGGATGAAGAGGTTGGCGA+AGG 0.617802 2_3:-5259147 Msa0273650:CDS
CGGTGGCGTTACCTCAGAAG+AGG 0.617929 2_3:-5259385 Msa0273650:CDS
CTTCAGCTGATACTGTCATG+AGG 0.627950 2_3:-5255361 Msa0273650:three_prime_UTR
GTTATCAATTTCTTCACCGG+TGG 0.628483 2_3:-5259510 Msa0273650:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2_3:-5259094 Msa0273650:CDS
CGGCGTGTGATTACACGGTA+CGG 0.633049 2_3:+5259992 None:intergenic
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2_3:-5259087 Msa0273650:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2_3:-5259794 Msa0273650:CDS
TGCGGTACATTCCACCGCGG+TGG 0.640964 2_3:-5259402 Msa0273650:CDS
GAATTAGCAAATTTCCGATG+AGG 0.643473 2_3:+5259449 None:intergenic
CTGAGGTAACGCCACCGCGG+TGG 0.646102 2_3:+5259391 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2_3:-5258971 Msa0273650:CDS
ATCAACGGAAGAGCCACCGG+AGG 0.652573 2_3:+5259473 None:intergenic
AGCTGATGAGGATGATGATG+AGG 0.655311 2_3:-5259264 Msa0273650:CDS
ACCAACAATCCTCGCGAACG+GGG 0.660501 2_3:+5259831 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2_3:+5259750 None:intergenic
GGATGATGATGAGGATGATG+AGG 0.668977 2_3:-5259255 Msa0273650:CDS
TCTCTAAATAGAATTTATCG+AGG 0.684469 2_3:-5255335 Msa0273650:three_prime_UTR
ACATTAGAGTCAATTCTGTG+TGG 0.702246 2_3:+5255218 None:intergenic
ATGTATAATAGCTAGCCAAG+CGG 0.714706 2_3:-5255452 Msa0273650:three_prime_UTR
CGGTATCTTGAACTCAACCG+TGG 0.727584 2_3:-5259767 Msa0273650:CDS
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2_3:-5258984 Msa0273650:CDS
CTTCTGAGGTAACGCCACCG+CGG 0.741340 2_3:+5259388 None:intergenic
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2_3:+5259864 None:intergenic
AATTGCGGTACATTCCACCG+CGG 0.821763 2_3:-5259405 Msa0273650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAATAGATTTTTTTTAA+TGG - chr2_3:5257034-5257053 Msa0273650:intron 10.0%
!! TTTATAATACATTTATAGTT+AGG - chr2_3:5259313-5259332 Msa0273650:CDS 10.0%
!! AAATTAAAATAGTGTAATTC+AGG + chr2_3:5256913-5256932 None:intergenic 15.0%
!! TACATGTAAATAGTTTAAAT+AGG - chr2_3:5257625-5257644 Msa0273650:intron 15.0%
!! ATTAGATTTATATCATTTGA+AGG + chr2_3:5257690-5257709 None:intergenic 15.0%
!! TAAATTATGTTTATTGAACT+GGG + chr2_3:5258851-5258870 None:intergenic 15.0%
!! TTCAATAAACATAATTTAGT+GGG - chr2_3:5258853-5258872 Msa0273650:intron 15.0%
!! TGTATTATAAATAAGTAAAC+TGG + chr2_3:5259304-5259323 None:intergenic 15.0%
!! GAAATAAACATTAAAACATA+TGG + chr2_3:5259447-5259466 None:intergenic 15.0%
!! AAGATATAGAAAAGGTTAAA+CGG + chr2_3:5255230-5255249 None:intergenic 20.0%
!! AAGAGAAAAAGATATAGAAA+AGG + chr2_3:5255238-5255257 None:intergenic 20.0%
!!! TACGATTAAGAAAAAGTATA+AGG - chr2_3:5255563-5255582 Msa0273650:intron 20.0%
!!! TGCTTTGATAAGTTTATTTT+TGG - chr2_3:5256440-5256459 Msa0273650:intron 20.0%
!!! GATAAGTTTATTTTTGGTTT+AGG - chr2_3:5256446-5256465 Msa0273650:intron 20.0%
!!! GTTTTAGTTTACTATTTTAC+AGG + chr2_3:5257141-5257160 None:intergenic 20.0%
!! TAATTATCTACATTCTTACT+TGG + chr2_3:5257731-5257750 None:intergenic 20.0%
!! AGAATTAGTTAAAGAAAACA+AGG + chr2_3:5258513-5258532 None:intergenic 20.0%
!!! CATTTTGATAAAAAGATGTA+AGG - chr2_3:5258749-5258768 Msa0273650:intron 20.0%
!!! ATAAGGTAAGTTTTAATTAG+AGG + chr2_3:5258825-5258844 None:intergenic 20.0%
!! CTAAATTATGTTTATTGAAC+TGG + chr2_3:5258852-5258871 None:intergenic 20.0%
!! GTTCAATAAACATAATTTAG+TGG - chr2_3:5258852-5258871 Msa0273650:intron 20.0%
!!! GAAAACCTGTATTTTAATTT+AGG + chr2_3:5259370-5259389 None:intergenic 20.0%
!! GTTGCTGAATTAATTTATAA+GGG + chr2_3:5259937-5259956 None:intergenic 20.0%
!! AGTTGCTGAATTAATTTATA+AGG + chr2_3:5259938-5259957 None:intergenic 20.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG - chr2_3:5255613-5255632 Msa0273650:intron 25.0%
! TATCAAATCACAAGCTAAAA+GGG + chr2_3:5256309-5256328 None:intergenic 25.0%
! TTATCAAATCACAAGCTAAA+AGG + chr2_3:5256310-5256329 None:intergenic 25.0%
!!! TTTGTTTTTCAATGAGTGAA+TGG - chr2_3:5256366-5256385 Msa0273650:intron 25.0%
! TTGGTTTAGGAAAATAAATG+TGG - chr2_3:5256459-5256478 Msa0273650:intron 25.0%
!! AATGAATGAATGCTTTTGAT+TGG - chr2_3:5256517-5256536 Msa0273650:intron 25.0%
! CACAAAACATAAAGAACAAA+AGG + chr2_3:5256726-5256745 None:intergenic 25.0%
!! CTTTTGTTCTTTATGTTTTG+TGG - chr2_3:5256724-5256743 Msa0273650:intron 25.0%
!!! GTGTATTTTTGACTTTTAGA+TGG - chr2_3:5256856-5256875 Msa0273650:intron 25.0%
!! TCTATAACCATTTTGCAATA+AGG - chr2_3:5256964-5256983 Msa0273650:intron 25.0%
! TCTTAACTCTTATGTACAAT+GGG - chr2_3:5257003-5257022 Msa0273650:intron 25.0%
!! GCGTGTTTCTATAAATATAA+GGG - chr2_3:5257445-5257464 Msa0273650:intron 25.0%
! GAATATGTATATTTGACACA+AGG + chr2_3:5257519-5257538 None:intergenic 25.0%
!! AAGTCCTGAAATATTTTCAA+AGG - chr2_3:5257652-5257671 Msa0273650:intron 25.0%
!! TATGCCTTTGAAAATATTTC+AGG + chr2_3:5257659-5257678 None:intergenic 25.0%
! ATAAGTAAAAATGTTCCTTG+AGG - chr2_3:5257803-5257822 Msa0273650:intron 25.0%
! TAAGTAAAAATGTTCCTTGA+GGG - chr2_3:5257804-5257823 Msa0273650:intron 25.0%
! ATTCTATGAAATCATCTGTT+TGG - chr2_3:5258528-5258547 Msa0273650:intron 25.0%
! CGTGATTATTAAAAGAGATT+TGG - chr2_3:5258612-5258631 Msa0273650:intron 25.0%
! ATAAACATAATTTAGTGGGA+TGG - chr2_3:5258857-5258876 Msa0273650:intron 25.0%
!!! TTTTGTTTTCTGTTGCTATT+TGG - chr2_3:5258989-5259008 Msa0273650:CDS 25.0%
! ATTATGGATAAGTAGTTAGA+GGG - chr2_3:5259037-5259056 Msa0273650:CDS 25.0%
! AGTCTCCTAAATTAAAATAC+AGG - chr2_3:5259362-5259381 Msa0273650:CDS 25.0%
! ATTGTTCTTAAATTGTTGCA+AGG - chr2_3:5259633-5259652 Msa0273650:CDS 25.0%
!!! TAATGTTTTGGTTATGATCA+CGG - chr2_3:5259803-5259822 Msa0273650:CDS 25.0%
! TCTCTAAATAGAATTTATCG+AGG - chr2_3:5259864-5259883 Msa0273650:CDS 25.0%
!! AATTTATCGAGGAGTAATTT+TGG - chr2_3:5259875-5259894 Msa0273650:CDS 25.0%
GAGAGAATGAGAAGAAATTA+GGG + chr2_3:5255271-5255290 None:intergenic 30.0%
AGAGAGAATGAGAAGAAATT+AGG + chr2_3:5255272-5255291 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG - chr2_3:5255577-5255596 Msa0273650:intron 30.0%
GTATAAGGTTGAAAAAGCTA+GGG - chr2_3:5255578-5255597 Msa0273650:intron 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG - chr2_3:5255628-5255647 Msa0273650:intron 30.0%
ACATCTAACCGTTCAAAAAA+AGG + chr2_3:5255639-5255658 None:intergenic 30.0%
! AACTTCTTAGCACTGAAATT+AGG + chr2_3:5255672-5255691 None:intergenic 30.0%
GAAGTTATCAATTTCTTCAC+CGG - chr2_3:5255686-5255705 Msa0273650:intron 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG - chr2_3:5255887-5255906 Msa0273650:intron 30.0%
ATCAAATCACAAGCTAAAAG+GGG + chr2_3:5256308-5256327 None:intergenic 30.0%
! AAACAAAAAACTAAGCACTG+CGG + chr2_3:5256347-5256366 None:intergenic 30.0%
AGAACAAAAGGTTGTTGTAT+TGG + chr2_3:5256714-5256733 None:intergenic 30.0%
! TGTTCTTTATGTTTTGTGGT+TGG - chr2_3:5256728-5256747 Msa0273650:intron 30.0%
GTCTTAACTCTTATGTACAA+TGG - chr2_3:5257002-5257021 Msa0273650:intron 30.0%
!! ATGGCAGTTTTGTATGTATT+TGG - chr2_3:5257242-5257261 Msa0273650:intron 30.0%
! GCATCATACATGTATTTTCA+AGG - chr2_3:5257264-5257283 Msa0273650:intron 30.0%
!!! GAGTGTTATTGTTTTTATGC+CGG - chr2_3:5257344-5257363 Msa0273650:intron 30.0%
! GGCGTGTTTCTATAAATATA+AGG - chr2_3:5257444-5257463 Msa0273650:intron 30.0%
TATCTAGCAAACATGTTTAG+TGG - chr2_3:5257589-5257608 Msa0273650:intron 30.0%
TCTACATTCTTACTTGGATA+TGG + chr2_3:5257725-5257744 None:intergenic 30.0%
! TGGATATTGTGATGTTGATT+GGG + chr2_3:5258132-5258151 None:intergenic 30.0%
!! AAGGTAATGGCTTTAGATTT+AGG - chr2_3:5258178-5258197 Msa0273650:intron 30.0%
! AGCTTTATAAAGAAGGTTCA+GGG + chr2_3:5258381-5258400 None:intergenic 30.0%
! AAGCTTTATAAAGAAGGTTC+AGG + chr2_3:5258382-5258401 None:intergenic 30.0%
! AACTGCAAGCTTTATAAAGA+AGG + chr2_3:5258388-5258407 None:intergenic 30.0%
TTATTAGAGTACAACTCCAA+TGG + chr2_3:5258416-5258435 None:intergenic 30.0%
TAAAGAAAACAAGGCAAACA+TGG + chr2_3:5258504-5258523 None:intergenic 30.0%
TATGAAATCATCTGTTTGGA+GGG - chr2_3:5258532-5258551 Msa0273650:intron 30.0%
TAGAAAGAGAAATAAGCCAA+AGG - chr2_3:5258580-5258599 Msa0273650:intron 30.0%
! TTTTTATCAAAATGTCAGCG+TGG + chr2_3:5258743-5258762 None:intergenic 30.0%
TATTGAATATCCAAGCATCA+GGG + chr2_3:5258780-5258799 None:intergenic 30.0%
TTATTGAATATCCAAGCATC+AGG + chr2_3:5258781-5258800 None:intergenic 30.0%
TTTATTGAACTGGGCATATA+AGG + chr2_3:5258842-5258861 None:intergenic 30.0%
TAATATATCCAATAACCACC+TGG - chr2_3:5258887-5258906 Msa0273650:intron 30.0%
ACTATACAGTTTCTTTCACT+TGG + chr2_3:5258962-5258981 None:intergenic 30.0%
AGTGAAAGAAACTGTATAGT+TGG - chr2_3:5258962-5258981 Msa0273650:CDS 30.0%
GTGAAAGAAACTGTATAGTT+GGG - chr2_3:5258963-5258982 Msa0273650:CDS 30.0%
! CTTCTTTTTCCTCTTGATTA+TGG - chr2_3:5259021-5259040 Msa0273650:CDS 30.0%
ACTACTTATCCATAATCAAG+AGG + chr2_3:5259033-5259052 None:intergenic 30.0%
GATTATGGATAAGTAGTTAG+AGG - chr2_3:5259036-5259055 Msa0273650:CDS 30.0%
! GAAAAGATGAAGTGTTTGAA+TGG - chr2_3:5259181-5259200 Msa0273650:CDS 30.0%
GTGTTTGAATGGAAATTTGA+TGG - chr2_3:5259192-5259211 Msa0273650:CDS 30.0%
TGATGGTAGTTATCGTATAT+TGG - chr2_3:5259209-5259228 Msa0273650:CDS 30.0%
ATAAGTAAACTGGAACTGTT+AGG + chr2_3:5259294-5259313 None:intergenic 30.0%
! GGTTTTCATGAATGTTATTG+CGG - chr2_3:5259383-5259402 Msa0273650:CDS 30.0%
! CATGTTTGGTTTCTTTCTAT+GGG - chr2_3:5259406-5259425 Msa0273650:CDS 30.0%
! GTTTCTTTCTATGGGTTTTA+TGG - chr2_3:5259414-5259433 Msa0273650:CDS 30.0%
!!! TTTACCATGTGTTTTTGGAA+AGG - chr2_3:5259474-5259493 Msa0273650:CDS 30.0%
GTAGTAAAACATAGTCGTTA+TGG - chr2_3:5259610-5259629 Msa0273650:CDS 30.0%
!!! AATGTTTTGGTTATGATCAC+GGG - chr2_3:5259804-5259823 Msa0273650:CDS 30.0%
AACTGTACTTAAGCCTAATT+TGG - chr2_3:5259954-5259973 Msa0273650:five_prime_UTR 30.0%
ACTGTACTTAAGCCTAATTT+GGG - chr2_3:5259955-5259974 Msa0273650:five_prime_UTR 30.0%
AAAGAATCGTGGTGAAAATC+CGG + chr2_3:5255327-5255346 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG - chr2_3:5255454-5255473 Msa0273650:three_prime_UTR 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG - chr2_3:5255645-5255664 Msa0273650:intron 35.0%
AATTTCCGATGAGGAATCAA+CGG + chr2_3:5255744-5255763 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG + chr2_3:5255753-5255772 None:intergenic 35.0%
!! CATCGGAAATTTGCTAATTC+TGG - chr2_3:5255753-5255772 Msa0273650:intron 35.0%
TTATTCATCACCTGCAATTG+CGG - chr2_3:5255779-5255798 Msa0273650:intron 35.0%
!!! TGATGGATGATGGGTATTTT+AGG - chr2_3:5255871-5255890 Msa0273650:intron 35.0%
TCATATTTGACAGTACACTC+AGG - chr2_3:5256765-5256784 Msa0273650:intron 35.0%
CATATTTGACAGTACACTCA+GGG - chr2_3:5256766-5256785 Msa0273650:intron 35.0%
!! TTGACTTTTAGATGGTGTTG+TGG - chr2_3:5256864-5256883 Msa0273650:intron 35.0%
GCGTTTACCTTATTGCAAAA+TGG + chr2_3:5256974-5256993 None:intergenic 35.0%
ACTCTTATGTACAATGGGTA+AGG - chr2_3:5257008-5257027 Msa0273650:intron 35.0%
!!! TTGAGTTCATTTTGAAGCAG+TGG - chr2_3:5257197-5257216 Msa0273650:intron 35.0%
!!! TGAGTTCATTTTGAAGCAGT+GGG - chr2_3:5257198-5257217 Msa0273650:intron 35.0%
!! TTTGTTGGTTTGTCTTGTGA+TGG - chr2_3:5257223-5257242 Msa0273650:intron 35.0%
AAAATCAAGTCAGTCTACAC+CGG + chr2_3:5257366-5257385 None:intergenic 35.0%
AAAATGTTCCTTGAGGGAAT+AGG - chr2_3:5257810-5257829 Msa0273650:intron 35.0%
AATTGTAGTTAGTCAGAGCT+AGG + chr2_3:5257974-5257993 None:intergenic 35.0%
! GGATATTGTGATGTTGATTG+GGG + chr2_3:5258131-5258150 None:intergenic 35.0%
GTGGATATTGTGATGTTGAT+TGG + chr2_3:5258133-5258152 None:intergenic 35.0%
AATATCCACATATGCACTGA+GGG - chr2_3:5258144-5258163 Msa0273650:intron 35.0%
!! CTAAAAGGTACCATCTCTTT+GGG + chr2_3:5258204-5258223 None:intergenic 35.0%
!! TCTAAAAGGTACCATCTCTT+TGG + chr2_3:5258205-5258224 None:intergenic 35.0%
!! CCTGCATAAAGGTATCTAAA+AGG + chr2_3:5258219-5258238 None:intergenic 35.0%
! CCTTTTAGATACCTTTATGC+AGG - chr2_3:5258216-5258235 Msa0273650:intron 35.0%
ACTAACTGACCATGTTAACT+AGG - chr2_3:5258280-5258299 Msa0273650:intron 35.0%
TCTCACATTCCTAGTTAACA+TGG + chr2_3:5258292-5258311 None:intergenic 35.0%
GCTTTATAAAGAAGGTTCAG+GGG + chr2_3:5258380-5258399 None:intergenic 35.0%
TACTCTAATAACACACCTGT+TGG - chr2_3:5258425-5258444 Msa0273650:intron 35.0%
GAATTGCTACCATGTGATTA+GGG - chr2_3:5258447-5258466 Msa0273650:intron 35.0%
AATTGCTACCATGTGATTAG+GGG - chr2_3:5258448-5258467 Msa0273650:intron 35.0%
CTATGAAATCATCTGTTTGG+AGG - chr2_3:5258531-5258550 Msa0273650:intron 35.0%
AATCACGCATATACTTCCTT+TGG + chr2_3:5258599-5258618 None:intergenic 35.0%
! AAAATACTTATGGTGGTGTG+TGG + chr2_3:5258699-5258718 None:intergenic 35.0%
CATCAGGAAAATACTTATGG+TGG + chr2_3:5258706-5258725 None:intergenic 35.0%
AGGCATCAGGAAAATACTTA+TGG + chr2_3:5258709-5258728 None:intergenic 35.0%
CATAATTTAGTGGGATGGTT+TGG - chr2_3:5258862-5258881 Msa0273650:intron 35.0%
!! GTTTTGACAAGTAGCTGATA+TGG - chr2_3:5259079-5259098 Msa0273650:CDS 35.0%
TAACATCAGAGAGATGAGAT+TGG - chr2_3:5259109-5259128 Msa0273650:CDS 35.0%
! GCATGTTTGGTTTCTTTCTA+TGG - chr2_3:5259405-5259424 Msa0273650:CDS 35.0%
! AGTGCTTTACCATGTGTTTT+TGG - chr2_3:5259469-5259488 Msa0273650:CDS 35.0%
CTATCCTTTCCAAAAACACA+TGG + chr2_3:5259481-5259500 None:intergenic 35.0%
AGTAGTTATTGTGTGATACC+TGG - chr2_3:5259499-5259518 Msa0273650:CDS 35.0%
GACATTACAATGATGCAACA+AGG + chr2_3:5259542-5259561 None:intergenic 35.0%
ATTGTTGCAAGGATTTATCG+TGG - chr2_3:5259644-5259663 Msa0273650:CDS 35.0%
AAACACATGACATGTAAGTG+GGG + chr2_3:5259687-5259706 None:intergenic 35.0%
GAAACACATGACATGTAAGT+GGG + chr2_3:5259688-5259707 None:intergenic 35.0%
AGAAACACATGACATGTAAG+TGG + chr2_3:5259689-5259708 None:intergenic 35.0%
ATGTATAATAGCTAGCCAAG+CGG - chr2_3:5259747-5259766 Msa0273650:CDS 35.0%
! ATCGGAACACTCTAATGTTT+TGG - chr2_3:5259791-5259810 Msa0273650:CDS 35.0%
ACATTAGAGTCAATTCTGTG+TGG + chr2_3:5259984-5260003 None:intergenic 35.0%
TTAAACGGCGTGTGATTACA+CGG + chr2_3:5255215-5255234 None:intergenic 40.0%
CATCGGAGAAATTAGGGTTA+GGG + chr2_3:5255304-5255323 None:intergenic 40.0%
CTTTCTGACGAAGATTACCA+CGG + chr2_3:5255452-5255471 None:intergenic 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG + chr2_3:5255520-5255539 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG - chr2_3:5255584-5255603 Msa0273650:intron 40.0%
GTTATCAATTTCTTCACCGG+TGG - chr2_3:5255689-5255708 Msa0273650:intron 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG - chr2_3:5255756-5255775 Msa0273650:intron 40.0%
GCAGAATAATTCCTCTTCTG+AGG + chr2_3:5255828-5255847 None:intergenic 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG - chr2_3:5255874-5255893 Msa0273650:intron 40.0%
AAGTGGATGAAGGGGATAAA+GGG - chr2_3:5256024-5256043 Msa0273650:intron 40.0%
TGGTGAAATGTATGAGAGAG+TGG - chr2_3:5256088-5256107 Msa0273650:intron 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG - chr2_3:5256132-5256151 Msa0273650:intron 40.0%
CTAAAGATCTTGAAGTGCAG+AGG - chr2_3:5256165-5256184 Msa0273650:intron 40.0%
TATGGATACTCAAGTTCAGC+TGG - chr2_3:5256199-5256218 Msa0273650:intron 40.0%
ATTAAGCGTGGAAAACCATC+TGG - chr2_3:5256227-5256246 Msa0273650:intron 40.0%
TTAAGCGTGGAAAACCATCT+GGG - chr2_3:5256228-5256247 Msa0273650:intron 40.0%
!! TGAATGGTGTTATGCATGAC+AGG - chr2_3:5256382-5256401 Msa0273650:intron 40.0%
!! GAATGGTGTTATGCATGACA+GGG - chr2_3:5256383-5256402 Msa0273650:intron 40.0%
!! ATTGGCTGTTTCTAGTGCTA+TGG - chr2_3:5256535-5256554 Msa0273650:intron 40.0%
GTCAATCAGCAAGCCAAATT+GGG + chr2_3:5256811-5256830 None:intergenic 40.0%
TGTCAATCAGCAAGCCAAAT+TGG + chr2_3:5256812-5256831 None:intergenic 40.0%
TGATTGACATCGATGGGATT+TGG - chr2_3:5256823-5256842 Msa0273650:intron 40.0%
TTGCTCAGAATGCTTGTCAA+GGG + chr2_3:5257116-5257135 None:intergenic 40.0%
!!! GAGTTCATTTTGAAGCAGTG+GGG - chr2_3:5257199-5257218 Msa0273650:intron 40.0%
!! TCAACAGCATCTTGTTTCTG+TGG - chr2_3:5257297-5257316 Msa0273650:intron 40.0%
TCTTTCGTGTACGGATATAG+TGG - chr2_3:5257423-5257442 Msa0273650:intron 40.0%
CAGTTCACAATTCACAGACA+AGG - chr2_3:5257841-5257860 Msa0273650:intron 40.0%
!! TCTCATTGGAGGTTGTTTTC+AGG + chr2_3:5257879-5257898 None:intergenic 40.0%
!! TTCGAGCATCGTTTTCTCAT+TGG + chr2_3:5257893-5257912 None:intergenic 40.0%
!!! CTTGGGTTCTTTTTTTCACC+TGG + chr2_3:5258081-5258100 None:intergenic 40.0%
CAGGTGAAAAAAAGAACCCA+AGG - chr2_3:5258079-5258098 Msa0273650:intron 40.0%
CAATATCCACATATGCACTG+AGG - chr2_3:5258143-5258162 Msa0273650:intron 40.0%
GGACACTAACATGAAGGTAA+TGG - chr2_3:5258165-5258184 Msa0273650:intron 40.0%
TAGATTTAGGCCCAAAGAGA+TGG - chr2_3:5258191-5258210 Msa0273650:intron 40.0%
! TTGCTGTTAAGCCTGCATAA+AGG + chr2_3:5258230-5258249 None:intergenic 40.0%
TGCGATTGTTGCATATTGCA+AGG - chr2_3:5258315-5258334 Msa0273650:intron 40.0%
ACTATGTACAGATCAGTGGT+TGG + chr2_3:5258343-5258362 None:intergenic 40.0%
AACCACTGATCTGTACATAG+TGG - chr2_3:5258342-5258361 Msa0273650:intron 40.0%
ACCACTGATCTGTACATAGT+GGG - chr2_3:5258343-5258362 Msa0273650:intron 40.0%
GGAATTGCTACCATGTGATT+AGG - chr2_3:5258446-5258465 Msa0273650:intron 40.0%
ATTGCTACCATGTGATTAGG+GGG - chr2_3:5258449-5258468 Msa0273650:intron 40.0%
! TGTTTGGAGGGTTGATTAGA+AGG - chr2_3:5258544-5258563 Msa0273650:intron 40.0%
! GGAAGAAAGATTAAGGCATC+AGG + chr2_3:5258722-5258741 None:intergenic 40.0%
TCAGCGTGGAAGAAAGATTA+AGG + chr2_3:5258729-5258748 None:intergenic 40.0%
! GGCTTTTGCTGAAATAGTGA+TGG - chr2_3:5259130-5259149 Msa0273650:CDS 40.0%
TTACACCGTTTCAGTTGGAT+TGG - chr2_3:5259236-5259255 Msa0273650:CDS 40.0%
TACACCGTTTCAGTTGGATT+GGG - chr2_3:5259237-5259256 Msa0273650:CDS 40.0%
TGAACCCAATCCAACTGAAA+CGG + chr2_3:5259244-5259263 None:intergenic 40.0%
ATGTCACCTGTCTTGATCAT+GGG - chr2_3:5259263-5259282 Msa0273650:CDS 40.0%
AGTAAACTGGAACTGTTAGG+AGG + chr2_3:5259291-5259310 None:intergenic 40.0%
GAATGTTATTGCGGCATGTT+TGG - chr2_3:5259392-5259411 Msa0273650:CDS 40.0%
!!! TGTGTGATACCTGGTTTTGA+TGG - chr2_3:5259508-5259527 Msa0273650:CDS 40.0%
!!! GATACCTGGTTTTGATGGTA+TGG - chr2_3:5259513-5259532 Msa0273650:CDS 40.0%
TGTATAATAGCTAGCCAAGC+GGG - chr2_3:5259748-5259767 Msa0273650:CDS 40.0%
TTCAGCTGATACTGTCATGA+GGG - chr2_3:5259839-5259858 Msa0273650:CDS 40.0%
GCATCGGAGAAATTAGGGTT+AGG + chr2_3:5255305-5255324 None:intergenic 45.0%
AACCCTAATTTCTCCGATGC+CGG - chr2_3:5255305-5255324 Msa0273650:three_prime_UTR 45.0%
! ATCCGGCATCGGAGAAATTA+GGG + chr2_3:5255310-5255329 None:intergenic 45.0%
! AATCCGGCATCGGAGAAATT+AGG + chr2_3:5255311-5255330 None:intergenic 45.0%
GATGCTGTTAACGCTCTTCA+TGG - chr2_3:5255489-5255508 Msa0273650:intron 45.0%
GCTAGGGTTACGGAATCTAA+TGG - chr2_3:5255594-5255613 Msa0273650:intron 45.0%
ATCAATTTCTTCACCGGTGG+CGG - chr2_3:5255692-5255711 Msa0273650:intron 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG - chr2_3:5255736-5255755 Msa0273650:intron 45.0%
GAAGAGGAATTATTCTGCCG+TGG - chr2_3:5255830-5255849 Msa0273650:intron 45.0%
! AGCTGATGAGGATGATGATG+AGG - chr2_3:5255935-5255954 Msa0273650:intron 45.0%
! GGATGATGATGAGGATGATG+AGG - chr2_3:5255944-5255963 Msa0273650:intron 45.0%
! TGATGATGAGGATGATGAGG+TGG - chr2_3:5255947-5255966 Msa0273650:intron 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG - chr2_3:5255991-5256010 Msa0273650:intron 45.0%
GAAGTGGATGAAGGGGATAA+AGG - chr2_3:5256023-5256042 Msa0273650:intron 45.0%
AAGGGGATAAAGGGAGAGAA+GGG - chr2_3:5256033-5256052 Msa0273650:intron 45.0%
GAGTGGAAGAACAGAAACTG+AGG - chr2_3:5256105-5256124 Msa0273650:intron 45.0%
AGAACAGAAACTGAGGCAGA+TGG - chr2_3:5256112-5256131 Msa0273650:intron 45.0%
GCAGAGGATGCAGATGTTTA+TGG - chr2_3:5256181-5256200 Msa0273650:intron 45.0%
GGAAAACCATCTGGGTCTAA+TGG - chr2_3:5256236-5256255 Msa0273650:intron 45.0%
ATCTCACCATTAGACCCAGA+TGG + chr2_3:5256245-5256264 None:intergenic 45.0%
! GTTATGCATGACAGGGCTTT+TGG - chr2_3:5256390-5256409 Msa0273650:intron 45.0%
ATTTGACAGTACACTCAGGG+TGG - chr2_3:5256769-5256788 Msa0273650:intron 45.0%
! GCTTGCTGATTGACATCGAT+GGG - chr2_3:5256817-5256836 Msa0273650:intron 45.0%
CTTGCTCAGAATGCTTGTCA+AGG + chr2_3:5257117-5257136 None:intergenic 45.0%
!! TTGAAGCAGTGGGGTTTTGT+TGG - chr2_3:5257208-5257227 Msa0273650:intron 45.0%
CCGTACACGAAAGAACAACA+GGG + chr2_3:5257417-5257436 None:intergenic 45.0%
CCCTGTTGTTCTTTCGTGTA+CGG - chr2_3:5257414-5257433 Msa0273650:intron 45.0%
TCCGTACACGAAAGAACAAC+AGG + chr2_3:5257418-5257437 None:intergenic 45.0%
!! GAGCATCGTTTTCTCATTGG+AGG + chr2_3:5257890-5257909 None:intergenic 45.0%
CAAGTGGAAAGCCAGAAGTT+CGG - chr2_3:5257933-5257952 Msa0273650:intron 45.0%
ACTGAGGGACACTAACATGA+AGG - chr2_3:5258159-5258178 Msa0273650:intron 45.0%
AGCAAGCCAATGAGCTTCAA+GGG - chr2_3:5258245-5258264 Msa0273650:intron 45.0%
CCACTGATCTGTACATAGTG+GGG - chr2_3:5258344-5258363 Msa0273650:intron 45.0%
AGCTTGCAGTTAGCTACCAT+TGG - chr2_3:5258397-5258416 Msa0273650:intron 45.0%
CACATGGTAGCAATTCCAAC+AGG + chr2_3:5258443-5258462 None:intergenic 45.0%
GGTGATTTCACGACTTGAAC+AGG + chr2_3:5258483-5258502 None:intergenic 45.0%
! TAAGGTTGATCCCTGATGCT+TGG - chr2_3:5258767-5258786 Msa0273650:intron 45.0%
TTGCACCTGGATACCAACTA+CGG + chr2_3:5258917-5258936 None:intergenic 45.0%
TCCAGGTGCAATGCAAATGT+AGG - chr2_3:5258926-5258945 Msa0273650:intron 45.0%
TCCTACATTTGCATTGCACC+TGG + chr2_3:5258930-5258949 None:intergenic 45.0%
GCAATGCAAATGTAGGAGTG+AGG - chr2_3:5258933-5258952 Msa0273650:intron 45.0%
TGGATAAGTAGTTAGAGGGC+TGG - chr2_3:5259041-5259060 Msa0273650:CDS 45.0%
GTTAGAGGGCTGGAAAAGTT+AGG - chr2_3:5259051-5259070 Msa0273650:CDS 45.0%
TTGCTGAAATAGTGATGGCC+TGG - chr2_3:5259135-5259154 Msa0273650:CDS 45.0%
GTGTCTTACACCGTTTCAGT+TGG - chr2_3:5259231-5259250 Msa0273650:CDS 45.0%
CATGTCACCTGTCTTGATCA+TGG - chr2_3:5259262-5259281 Msa0273650:CDS 45.0%
GCATCCATACCATCAAAACC+AGG + chr2_3:5259520-5259539 None:intergenic 45.0%
! ACGGTTTCAGTGATGGTGAT+CGG - chr2_3:5259773-5259792 Msa0273650:CDS 45.0%
CTTCAGCTGATACTGTCATG+AGG - chr2_3:5259838-5259857 Msa0273650:CDS 45.0%
TCGTGGTGAAAATCCGGCAT+CGG + chr2_3:5255321-5255340 None:intergenic 50.0%
ACGGTGGTGTGAAAGAATCG+TGG + chr2_3:5255338-5255357 None:intergenic 50.0%
TGACCAACAATCCTCGCGAA+CGG + chr2_3:5255373-5255392 None:intergenic 50.0%
TTCCACTCTCGTCGATGCAT+GGG - chr2_3:5255404-5255423 Msa0273650:three_prime_UTR 50.0%
CGGTATCTTGAACTCAACCG+TGG - chr2_3:5255432-5255451 Msa0273650:three_prime_UTR 50.0%
GTGGAATGTACCGCAATTGC+AGG + chr2_3:5255792-5255811 None:intergenic 50.0%
AATTGCGGTACATTCCACCG+CGG - chr2_3:5255794-5255813 Msa0273650:intron 50.0%
GAATTATTCTGCCGTGGCTG+CGG - chr2_3:5255836-5255855 Msa0273650:intron 50.0%
!! ACTGCTACGGTGATGGATGA+TGG - chr2_3:5255861-5255880 Msa0273650:intron 50.0%
!! CTGCTACGGTGATGGATGAT+GGG - chr2_3:5255862-5255881 Msa0273650:intron 50.0%
TGATGAGGATGATGAGGTGG+AGG - chr2_3:5255950-5255969 Msa0273650:intron 50.0%
TGATGAGGTGGAGGAAGTTG+AGG - chr2_3:5255959-5255978 Msa0273650:intron 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG - chr2_3:5255986-5256005 Msa0273650:intron 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG - chr2_3:5255990-5256009 Msa0273650:intron 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG - chr2_3:5255994-5256013 Msa0273650:intron 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG - chr2_3:5255995-5256014 Msa0273650:intron 50.0%
GAAGGGGATAAAGGGAGAGA+AGG - chr2_3:5256032-5256051 Msa0273650:intron 50.0%
AAGGGAGAGAAGGGATGAAG+AGG - chr2_3:5256042-5256061 Msa0273650:intron 50.0%
GAGAGAAGGGATGAAGAGGT+TGG - chr2_3:5256046-5256065 Msa0273650:intron 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG - chr2_3:5256068-5256087 Msa0273650:intron 50.0%
ACAGAAACTGAGGCAGATGG+TGG - chr2_3:5256115-5256134 Msa0273650:intron 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG - chr2_3:5256121-5256140 Msa0273650:intron 50.0%
CAGCTGGAGAGAATTAAGCG+TGG - chr2_3:5256215-5256234 Msa0273650:intron 50.0%
! CTTTTGGACCCGAGAACAGT+GGG - chr2_3:5256406-5256425 Msa0273650:intron 50.0%
ACCTTGAGACCCACTGTTCT+CGG + chr2_3:5256418-5256437 None:intergenic 50.0%
TGCCAGATGCGAACCCAATT+TGG - chr2_3:5256795-5256814 Msa0273650:intron 50.0%
AGCCAAATTGGGTTCGCATC+TGG + chr2_3:5256800-5256819 None:intergenic 50.0%
!! GGCTTGCTGATTGACATCGA+TGG - chr2_3:5256816-5256835 Msa0273650:intron 50.0%
TGACATCGATGGGATTTGGC+TGG - chr2_3:5256827-5256846 Msa0273650:intron 50.0%
CCATCTGACCTATTCCCTCA+AGG + chr2_3:5257821-5257840 None:intergenic 50.0%
CCTTGAGGGAATAGGTCAGA+TGG - chr2_3:5257818-5257837 Msa0273650:intron 50.0%
! CTGGCTTTCCACTTGCTTGT+CGG + chr2_3:5257928-5257947 None:intergenic 50.0%
TTTGCTTGCAGCCGAACTTC+TGG + chr2_3:5257947-5257966 None:intergenic 50.0%
TTTCACCTGGCTGAGTCTGT+GGG + chr2_3:5258068-5258087 None:intergenic 50.0%
! TTTTCACCTGGCTGAGTCTG+TGG + chr2_3:5258069-5258088 None:intergenic 50.0%
GATGACAGGCAGTCTACCTT+GGG + chr2_3:5258098-5258117 None:intergenic 50.0%
TGATGACAGGCAGTCTACCT+TGG + chr2_3:5258099-5258118 None:intergenic 50.0%
AGGTAGACTGCCTGTCATCA+TGG - chr2_3:5258099-5258118 Msa0273650:intron 50.0%
AGTGTCCCTCAGTGCATATG+TGG + chr2_3:5258152-5258171 None:intergenic 50.0%
CAGCAAGCCAATGAGCTTCA+AGG - chr2_3:5258244-5258263 Msa0273650:intron 50.0%
GCAAGCCAATGAGCTTCAAG+GGG - chr2_3:5258246-5258265 Msa0273650:intron 50.0%
CCAATGAGCTTCAAGGGGTT+GGG - chr2_3:5258251-5258270 Msa0273650:intron 50.0%
CCCCACTATGTACAGATCAG+TGG + chr2_3:5258347-5258366 None:intergenic 50.0%
GATGTGACCCCCTAATCACA+TGG + chr2_3:5258459-5258478 None:intergenic 50.0%
AACTGTCTATCAGCTGCGCT+GGG - chr2_3:5258661-5258680 Msa0273650:intron 50.0%
AAAACCGTCCACAAGGATCC+AGG + chr2_3:5259156-5259175 None:intergenic 50.0%
! TCCTTGTGGACGGTTTTCTG+TGG - chr2_3:5259159-5259178 Msa0273650:CDS 50.0%
TCCACAGAAAACCGTCCACA+AGG + chr2_3:5259163-5259182 None:intergenic 50.0%
GAGGATCCCATGATCAAGAC+AGG + chr2_3:5259272-5259291 None:intergenic 50.0%
CATGACATGTAAGTGGGGTG+AGG + chr2_3:5259682-5259701 None:intergenic 50.0%
TCTGTGTGGCAGCCCAAATT+AGG + chr2_3:5259970-5259989 None:intergenic 50.0%
AGCCAGTTCCCCCAATACAC+CGG - chr2_3:5255181-5255200 Msa0273650:three_prime_UTR 55.0%
TGATTACACGGTACGGTCGC+CGG + chr2_3:5255203-5255222 None:intergenic 55.0%
CGGCGTGTGATTACACGGTA+CGG + chr2_3:5255210-5255229 None:intergenic 55.0%
ACCAACAATCCTCGCGAACG+GGG + chr2_3:5255371-5255390 None:intergenic 55.0%
GACCAACAATCCTCGCGAAC+GGG + chr2_3:5255372-5255391 None:intergenic 55.0%
CTTCCACTCTCGTCGATGCA+TGG - chr2_3:5255403-5255422 Msa0273650:three_prime_UTR 55.0%
TCCACTCTCGTCGATGCATG+GGG - chr2_3:5255405-5255424 Msa0273650:three_prime_UTR 55.0%
GGAATCAACGGAAGAGCCAC+CGG + chr2_3:5255732-5255751 None:intergenic 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG - chr2_3:5255962-5255981 Msa0273650:intron 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG - chr2_3:5255968-5255987 Msa0273650:intron 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG - chr2_3:5255971-5255990 Msa0273650:intron 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG - chr2_3:5255980-5255999 Msa0273650:intron 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG - chr2_3:5255996-5256015 Msa0273650:intron 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG - chr2_3:5255997-5256016 Msa0273650:intron 55.0%
AGGGGGAGTGAAGTGGATGA+AGG - chr2_3:5256014-5256033 Msa0273650:intron 55.0%
GGGGGAGTGAAGTGGATGAA+GGG - chr2_3:5256015-5256034 Msa0273650:intron 55.0%
GGGGAGTGAAGTGGATGAAG+GGG - chr2_3:5256016-5256035 Msa0273650:intron 55.0%
AGGGATGAAGAGGTTGGCGA+AGG - chr2_3:5256052-5256071 Msa0273650:intron 55.0%
! GCTTTTGGACCCGAGAACAG+TGG - chr2_3:5256405-5256424 Msa0273650:intron 55.0%
CCTTGAGACCCACTGTTCTC+GGG + chr2_3:5256417-5256436 None:intergenic 55.0%
CGCAATCACCGACAAGCAAG+TGG - chr2_3:5257917-5257936 Msa0273650:intron 55.0%
GGGGTTCAGACCATGATGAC+AGG + chr2_3:5258112-5258131 None:intergenic 55.0%
GCCAATGAGCTTCAAGGGGT+TGG - chr2_3:5258250-5258269 Msa0273650:intron 55.0%
CCCAACCCCTTGAAGCTCAT+TGG + chr2_3:5258254-5258273 None:intergenic 55.0%
CAACTGTCTATCAGCTGCGC+TGG - chr2_3:5258660-5258679 Msa0273650:intron 55.0%
CAGCTGCGCTGGGTAAGTAA+AGG - chr2_3:5258671-5258690 Msa0273650:intron 55.0%
ACCTGGATACCAACTACGGC+TGG + chr2_3:5258913-5258932 None:intergenic 55.0%
AGTGATGGCCTGGATCCTTG+TGG - chr2_3:5259145-5259164 Msa0273650:CDS 55.0%
ATGGCCTGGATCCTTGTGGA+CGG - chr2_3:5259149-5259168 Msa0273650:CDS 55.0%
ATAGCTAGCCAAGCGGGCAA+CGG - chr2_3:5259754-5259773 Msa0273650:CDS 55.0%
TACGGTCGCCGGTGTATTGG+GGG + chr2_3:5255192-5255211 None:intergenic 60.0%
GTACGGTCGCCGGTGTATTG+GGG + chr2_3:5255193-5255212 None:intergenic 60.0%
GGTACGGTCGCCGGTGTATT+GGG + chr2_3:5255194-5255213 None:intergenic 60.0%
ACAATCCTCGCGAACGGGGA+CGG + chr2_3:5255367-5255386 None:intergenic 60.0%
TCCCCGTTCGCGAGGATTGT+TGG - chr2_3:5255367-5255386 Msa0273650:three_prime_UTR 60.0%
! ACCCCATGCATCGACGAGAG+TGG + chr2_3:5255409-5255428 None:intergenic 60.0%
TCGTCGATGCATGGGGTCGT+CGG - chr2_3:5255412-5255431 Msa0273650:three_prime_UTR 60.0%
ATCAACGGAAGAGCCACCGG+AGG + chr2_3:5255729-5255748 None:intergenic 60.0%
!! CTTCTGAGGTAACGCCACCG+CGG + chr2_3:5255814-5255833 None:intergenic 60.0%
CGGTGGCGTTACCTCAGAAG+AGG - chr2_3:5255814-5255833 Msa0273650:intron 60.0%
TGCGGCTACTGCTACGGTGA+TGG - chr2_3:5255854-5255873 Msa0273650:intron 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG + chr2_3:5255922-5255941 None:intergenic 60.0%
TGCTGCTGCGGAAGCTGATG+AGG - chr2_3:5255923-5255942 Msa0273650:intron 60.0%
CCCGAGAACAGTGGGTCTCA+AGG - chr2_3:5256414-5256433 Msa0273650:intron 60.0%
ACTCACCCACAGACTCAGCC+AGG - chr2_3:5258060-5258079 Msa0273650:intron 60.0%
! ACGGCTGGCCAGGTGGTTAT+TGG + chr2_3:5258898-5258917 None:intergenic 60.0%
! GATACCAACTACGGCTGGCC+AGG + chr2_3:5258908-5258927 None:intergenic 60.0%
! GCCAGCCGTAGTTGGTATCC+AGG - chr2_3:5258909-5258928 Msa0273650:intron 60.0%
CACTGAAACCGTTGCCCGCT+TGG + chr2_3:5259765-5259784 None:intergenic 60.0%
GCGGGCAACGGTTTCAGTGA+TGG - chr2_3:5259766-5259785 Msa0273650:CDS 60.0%
CGCCGGTGTATTGGGGGAAC+TGG + chr2_3:5255186-5255205 None:intergenic 65.0%
CGGTACGGTCGCCGGTGTAT+TGG + chr2_3:5255195-5255214 None:intergenic 65.0%
TGCGGTACATTCCACCGCGG+TGG - chr2_3:5255797-5255816 Msa0273650:intron 65.0%
CGTAGCAGTAGCCGCAGCCA+CGG + chr2_3:5255850-5255869 None:intergenic 65.0%
CGTGGCTGCGGCTACTGCTA+CGG - chr2_3:5255848-5255867 Msa0273650:intron 65.0%
GGAAGGGAGGGGGAGTGAAG+TGG - chr2_3:5256007-5256026 Msa0273650:intron 65.0%
ACCACCTGGCCAGCCGTAGT+TGG - chr2_3:5258901-5258920 Msa0273650:intron 65.0%
! ACCAACTACGGCTGGCCAGG+TGG + chr2_3:5258905-5258924 None:intergenic 65.0%
CGAACGGGGACGGTGCGTGA+CGG + chr2_3:5255357-5255376 None:intergenic 70.0%
GGAAGAGCCACCGGAGGCGA+CGG + chr2_3:5255723-5255742 None:intergenic 70.0%
CTGAGGTAACGCCACCGCGG+TGG + chr2_3:5255811-5255830 None:intergenic 70.0%
AGCTGCAGCCGCTGCTGCTG+CGG - chr2_3:5255911-5255930 Msa0273650:intron 70.0%
ACGGGGACGGTGCGTGACGG+TGG + chr2_3:5255354-5255373 None:intergenic 75.0%
ACGCACCGTCCCCGTTCGCG+AGG - chr2_3:5255359-5255378 Msa0273650:three_prime_UTR 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG + chr2_3:5255708-5255727 None:intergenic 75.0%
GGCGGTGACACCGTCGCCTC+CGG - chr2_3:5255710-5255729 Msa0273650:intron 75.0%
GGTGACACCGTCGCCTCCGG+TGG - chr2_3:5255713-5255732 Msa0273650:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 5255176 5260045 5255176 ID=Msa0273650;Name=Msa0273650
chr2_3 mRNA 5255176 5260045 5255176 ID=Msa0273650-mRNA-1;Parent=Msa0273650;Name=Msa0273650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|0|0.5|1|0|0.5|2|301|315
chr2_3 exon 5255176 5255476 5255176 ID=Msa0273650-mRNA-1:exon:2548;Parent=Msa0273650-mRNA-1
chr2_3 exon 5258953 5260045 5258953 ID=Msa0273650-mRNA-1:exon:2547;Parent=Msa0273650-mRNA-1
chr2_3 five_prime_UTR 5259901 5260045 5259901 ID=Msa0273650-mRNA-1:five_prime_utr;Parent=Msa0273650-mRNA-1
chr2_3 CDS 5258953 5259900 5258953 ID=Msa0273650-mRNA-1:cds;Parent=Msa0273650-mRNA-1
chr2_3 three_prime_UTR 5255176 5255476 5255176 ID=Msa0273650-mRNA-1:three_prime_utr;Parent=Msa0273650-mRNA-1
Gene Sequence

>Msa0273650

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCTCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCCACCGCGGTGGCGTTACCTCAGAAGAGGAATTATTCTGCCGTGGCTGCGGCTACTGCTACGGTGATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAA

Protein sequence

>Msa0273650

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATVMDDGYFRRNYSAVAAAAAAAEADEDDDEDDEVEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGEI*