AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0458640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458640 MtrunA17_Chr3g0106041 96.639 476 10 5 1 473 1 473 0.0 815
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458640 AT5G58470.1 59.322 354 116 9 129 473 88 422 1.19e-80 256
Msa0458640 AT5G58470.2 59.322 354 116 9 129 473 88 422 1.19e-80 256

Find 274 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGTAGGTTGATTATTTC+AGG 0.168600 3_3:+54531130 Msa0458640:three_prime_UTR
CTACCTTAGCAGCAATTATT+TGG 0.176144 3_3:-54531115 None:intergenic
TATAATTACTATTATTATAT+TGG 0.229809 3_3:+54532062 Msa0458640:three_prime_UTR
GGTGGTGGTGGTGGAGGATA+TGG 0.242933 3_3:+54528090 Msa0458640:CDS
AGTAACTGGCACATCATTAT+TGG 0.246122 3_3:-54532653 None:intergenic
TGCGCTCGAAACACACTAAA+TGG 0.248505 3_3:-54531330 None:intergenic
GGCTATGGTGGTGGATATGC+TGG 0.263889 3_3:+54527913 Msa0458640:CDS
TCTGTTTGGTGCAATGTCTT+TGG 0.264666 3_3:+54532559 Msa0458640:three_prime_UTR
AACACACTAAATGGAATTAA+TGG 0.277377 3_3:-54531321 None:intergenic
GGTAGAGGAGGTGGTGGTGG+TGG 0.277683 3_3:+54528081 Msa0458640:CDS
GCCGCTGGAGCTGGCTCAGC+AGG 0.295410 3_3:-54529267 None:intergenic
GAAGAAGTGGAGGGAGCAAT+AGG 0.301449 3_3:+54528938 Msa0458640:CDS
AGTTGGCTGGTTTCTTGAAC+TGG 0.308491 3_3:+54530951 Msa0458640:three_prime_UTR
GTTGCTGCTGCTCAGTCTTA+TGG 0.311694 3_3:+54529024 Msa0458640:CDS
ATAGTCTACGATTTCTTCAT+TGG 0.311725 3_3:-54532447 None:intergenic
TCAATGACAAAGCTCTAGTA+TGG 0.315643 3_3:-54530883 None:intergenic
GGAAACGATGGCGGAGGATA+TGG 0.316231 3_3:+54528042 Msa0458640:CDS
TATGGTGGGAATGCAAATTA+TGG 0.325350 3_3:+54529075 Msa0458640:CDS
CCATAATGATCCCGCCTATC+AGG 0.326075 3_3:-54530844 None:intergenic
AATTCATATCCTCCTTCATA+TGG 0.347582 3_3:+54529141 Msa0458640:CDS
CAAAATTGACTTCCAATTGA+TGG 0.349288 3_3:-54532233 None:intergenic
TACGGTGGAAGGAGTGGATA+TGG 0.352722 3_3:+54528018 Msa0458640:CDS
GGAAGAGGCGGTGGTGGTAG+AGG 0.354221 3_3:+54528066 Msa0458640:CDS
GGTGGTAGAGGAGGTGGTGG+TGG 0.354326 3_3:+54528078 Msa0458640:CDS
CGTGGTGGCGGTGGAGGCGG+TGG 0.359666 3_3:+54528802 Msa0458640:CDS
TTATTGGTAATTCAAGTAAC+TGG 0.361156 3_3:-54532637 None:intergenic
AAGAAGTGGAGGGAGCAATA+GGG 0.362704 3_3:+54528939 Msa0458640:CDS
GTACTGTGAAATGTGGTCTA+AGG 0.365680 3_3:+54530915 Msa0458640:three_prime_UTR
GTGATGCACGGAGTGGTGGC+AGG 0.365974 3_3:+54529190 Msa0458640:CDS
CATTTGGTAATTCAAGTAAC+TGG 0.367123 3_3:-54532667 None:intergenic
TTCACCGGAGCCGCTGGAGC+TGG 0.368046 3_3:-54529276 None:intergenic
AGTGGTAATCGCGGTGGATT+TGG 0.368372 3_3:+54529237 Msa0458640:CDS
CTTTGGTAGGTCTTCCAGAC+TGG 0.381126 3_3:+54532525 Msa0458640:three_prime_UTR
AAAATGAAATACCTTTCGTT+AGG 0.382257 3_3:-54528315 None:intergenic
GCATACCCATGGTTATTTGC+TGG 0.383632 3_3:-54530351 None:intergenic
CACTGCTTCACCGGAGCCGC+TGG 0.385775 3_3:-54529282 None:intergenic
GGTTACGGAGGCGGTGGAGG+TGG 0.385869 3_3:+54527889 Msa0458640:CDS
CCCTCTGCAGCTCACTCTGC+TGG 0.387168 3_3:+54530161 Msa0458640:CDS
TATGAAGGAGGATATGAATT+AGG 0.390379 3_3:-54529138 None:intergenic
GGCGGTGGTGGTAGAGGAGG+TGG 0.390432 3_3:+54528072 Msa0458640:CDS
ACAGGTGGTGGCGGTGGTGG+TGG 0.390444 3_3:+54528213 Msa0458640:intron
CGAGGTGGTGGTGGTGGCCG+TGG 0.400437 3_3:+54528261 Msa0458640:CDS
AGAGGAGGTGGTGGTGGTGG+AGG 0.402018 3_3:+54528084 Msa0458640:CDS
TGAGCCAGCTCCAGCGGCTC+CGG 0.402504 3_3:+54529272 Msa0458640:CDS
GGCGGTGGTGGTGGCTTTCA+AGG 0.402598 3_3:+54528222 Msa0458640:CDS
GATCGTGGTGGCCGAGGTGG+TGG 0.405781 3_3:+54528249 Msa0458640:CDS
AATGAAAGTGGCGGTGGTTA+CGG 0.407733 3_3:+54527937 Msa0458640:CDS
TACGGAGGCGGTGGAGGTGG+TGG 0.410692 3_3:+54527892 Msa0458640:CDS
GGCTCGTCCCATGTGGCATC+TGG 0.411182 3_3:+54531238 Msa0458640:three_prime_UTR
CTATTCATTAATTCATTCGC+TGG 0.412216 3_3:-54531267 None:intergenic
CTCCAGACATGATTCGATCT+AGG 0.412930 3_3:-54527813 None:intergenic
GGCAGGGCTGCGCCTCAAGC+TGG 0.414310 3_3:+54529207 Msa0458640:CDS
CGTGGTGGCCGAGGTGGTGG+TGG 0.417136 3_3:+54528252 Msa0458640:CDS
TGGTTCATGTGTCCTCTGTT+TGG 0.417270 3_3:+54532545 Msa0458640:three_prime_UTR
GACCGTGGTGGCGGTGGAGG+CGG 0.419357 3_3:+54528799 Msa0458640:CDS
TCTTCGTCGCATTTCTCCTC+AGG 0.419593 3_3:+54532326 Msa0458640:three_prime_UTR
GGTGGTGGCCGTGGTGGAAG+TGG 0.420037 3_3:+54528270 Msa0458640:CDS
CCTGATAGGCGGGATCATTA+TGG 0.420562 3_3:+54530844 Msa0458640:CDS
CCTCCACCTACAAGCTATAC+TGG 0.425537 3_3:+54529111 Msa0458640:CDS
ATTCTTATACACCCATCAAT+TGG 0.425845 3_3:+54532221 Msa0458640:three_prime_UTR
GGCGGTGGAGGTGGTGGCTA+TGG 0.426905 3_3:+54527898 Msa0458640:CDS
GGTAACGATGGTGGAGGTTA+CGG 0.430518 3_3:+54528000 Msa0458640:CDS
ACCGACCGTGGTGGCGGTGG+AGG 0.431762 3_3:+54528796 Msa0458640:CDS
GGCAATAGGGGTGGCTATGG+TGG 0.434284 3_3:+54530796 Msa0458640:CDS
TAAACAGGTGGTGGCGGTGG+TGG 0.435666 3_3:+54528210 Msa0458640:intron
GGTGGTTACGGAGGCGGTGG+AGG 0.438292 3_3:+54527886 Msa0458640:CDS
GGTGGAGGTGGTGGCTATGG+TGG 0.439230 3_3:+54527901 Msa0458640:CDS
AATGATGCTCCCACATCAAC+AGG 0.440134 3_3:-54531958 None:intergenic
AAAATTTACACCGATGAAAA+CGG 0.441037 3_3:+54530101 Msa0458640:CDS
GGTAGAACTAATGATTATAA+TGG 0.441764 3_3:+54528892 Msa0458640:CDS
TTCTCATCGCACTGCTTCAC+CGG 0.442714 3_3:-54529291 None:intergenic
GGAACAATAACTTTGCTAGA+AGG 0.444355 3_3:+54528731 Msa0458640:CDS
GCTCAGTCTTATGGTGGTGC+TGG 0.449807 3_3:+54529033 Msa0458640:CDS
ATTCATATCCTCCTTCATAT+GGG 0.452118 3_3:+54529142 Msa0458640:CDS
CACGGCCACCACCACCACCT+CGG 0.454161 3_3:-54528260 None:intergenic
GGTGGAGATCGTGGTGGCCG+AGG 0.454946 3_3:+54528243 Msa0458640:CDS
GGTGGCCGAGGTGGTGGTGG+TGG 0.455478 3_3:+54528255 Msa0458640:CDS
GGTAACACGGGTGGTTATGG+TGG 0.455825 3_3:+54529165 Msa0458640:CDS
ATTATATTGGCTCATCGCGT+TGG 0.456009 3_3:+54532075 Msa0458640:three_prime_UTR
TTATATTGGCTCATCGCGTT+GGG 0.456549 3_3:+54532076 Msa0458640:three_prime_UTR
GGAGGTAGGTCTGAGAACTA+TGG 0.457510 3_3:+54528868 Msa0458640:CDS
GATAGGCGCAGAGACAATTC+TGG 0.458230 3_3:+54530820 Msa0458640:CDS
GATGCCACATGGGACGAGCC+AGG 0.459572 3_3:-54531235 None:intergenic
TAAGACTGAGCAGCAGCAAC+AGG 0.462356 3_3:-54529021 None:intergenic
AGAAGTGGAGGGAGCAATAG+GGG 0.463566 3_3:+54528940 Msa0458640:CDS
AGAGGCGGTGGTGGTAGAGG+AGG 0.463659 3_3:+54528069 Msa0458640:CDS
GCCACCACGGTCGGTACCAC+TGG 0.463939 3_3:-54528788 None:intergenic
TATGGTGGAAGAGGCGGTGG+TGG 0.464831 3_3:+54528060 Msa0458640:CDS
TTGTGTGTCTTGGCATCTTA+CGG 0.465242 3_3:+54532288 Msa0458640:three_prime_UTR
ATAATGCTTATAAATACAAA+TGG 0.466033 3_3:-54532102 None:intergenic
ACCCTAGATCGAATCATGTC+TGG 0.466378 3_3:+54527811 Msa0458640:exon
GGAGGTGGTGGCTATGGTGG+TGG 0.469109 3_3:+54527904 Msa0458640:CDS
AAGGGATTTATTATTTCAGT+TGG 0.471688 3_3:+54530934 Msa0458640:three_prime_UTR
AACGGTGGTGGAAGAGGCTA+TGG 0.472416 3_3:+54527976 Msa0458640:CDS
AGGGGCAATAGGGGTGGCTA+TGG 0.473447 3_3:+54530793 Msa0458640:intron
AGCGGAAACGGTGGTGGAAG+AGG 0.473501 3_3:+54527970 Msa0458640:CDS
AAATGAAATACCTTTCGTTA+GGG 0.473988 3_3:-54528314 None:intergenic
GATTTATTATTTCAGTTGGC+TGG 0.475448 3_3:+54530938 Msa0458640:three_prime_UTR
GAGACAATTCTGGTCCTGAT+AGG 0.475626 3_3:+54530830 Msa0458640:CDS
AGCGGTGGTTACGGAGGCGG+TGG 0.476801 3_3:+54527883 Msa0458640:CDS
TATGGTGCTAGCGGTGGTTA+CGG 0.476963 3_3:+54527874 Msa0458640:CDS
GGAAGATCTTGAAGCATGTA+TGG 0.480275 3_3:+54531633 Msa0458640:three_prime_UTR
ATGTACACAATGTTGAAGAA+AGG 0.481931 3_3:-54532582 None:intergenic
AAAATTGACTTCCAATTGAT+GGG 0.485636 3_3:-54532232 None:intergenic
GCGACGAAGAAAGCATCAAA+AGG 0.485956 3_3:-54532313 None:intergenic
TTATTTGCTGGAGGAGCCCT+TGG 0.485958 3_3:-54530339 None:intergenic
GGTTCGTATGGCGGTAATCA+AGG 0.488849 3_3:+54528964 Msa0458640:CDS
GGAAGGTGGCACAGCACCTC+CGG 0.489229 3_3:-54527851 None:intergenic
TCCTGCTGAGCCAGCTCCAG+CGG 0.489524 3_3:+54529266 Msa0458640:CDS
GGTGGTGGTAGAGGAGGTGG+TGG 0.489792 3_3:+54528075 Msa0458640:CDS
TGGAAGAATAAAGCAGAAGA+GGG 0.490876 3_3:+54530049 Msa0458640:CDS
ACCAGCAGAGTGAGCTGCAG+AGG 0.491814 3_3:-54530162 None:intergenic
AATAGAGGAGGAAGTGGCGG+AGG 0.492172 3_3:+54528829 Msa0458640:CDS
GCTAGCGGTGGTTACGGAGG+CGG 0.492927 3_3:+54527880 Msa0458640:CDS
TAATGATTATAATGGTGGTA+GGG 0.494474 3_3:+54528900 Msa0458640:CDS
CTAAAATTAACCTGTTGATG+TGG 0.496424 3_3:+54531948 Msa0458640:three_prime_UTR
AAATCTCACTTTCTCTCTTG+TGG 0.496836 3_3:+54527779 Msa0458640:five_prime_UTR
GGTCCACCAGTATAGCTTGT+AGG 0.498234 3_3:-54529117 None:intergenic
AGCAATAGGGGTGGTTCGTA+TGG 0.498577 3_3:+54528952 Msa0458640:CDS
GGAGCTAAAGGAAGCGGAAA+CGG 0.499112 3_3:+54527958 Msa0458640:CDS
GGTACCGACCGTGGTGGCGG+TGG 0.499385 3_3:+54528793 Msa0458640:CDS
CGAATCATGTCTGGAGGGTA+CGG 0.500460 3_3:+54527820 Msa0458640:exon
GGTAGGGGTAATAACAATGA+TGG 0.502632 3_3:+54528916 Msa0458640:CDS
GGTGCTGTGCCACCTTCCTA+TGG 0.503206 3_3:+54527856 Msa0458640:CDS
CTAATGATTATAATGGTGGT+AGG 0.504984 3_3:+54528899 Msa0458640:CDS
CAGTCTTATGGTGGTGCTGG+TGG 0.508179 3_3:+54529036 Msa0458640:CDS
GGATATGGTGGAAGAGGCGG+TGG 0.508760 3_3:+54528057 Msa0458640:CDS
GGAGGTTACGGTGGAAGGAG+TGG 0.509529 3_3:+54528012 Msa0458640:CDS
AATCGAAGTGTTGTGTGTCT+TGG 0.509577 3_3:+54532278 Msa0458640:three_prime_UTR
AGAGGACACATGAACCAGTC+TGG 0.509986 3_3:-54532539 None:intergenic
GGCGGTGGTTACGGAGCTAA+AGG 0.512687 3_3:+54527946 Msa0458640:CDS
TCTCCAAATAATTGCTGCTA+AGG 0.513490 3_3:+54531112 Msa0458640:three_prime_UTR
GGCGGAGGATATGGTGGAAG+AGG 0.513753 3_3:+54528051 Msa0458640:CDS
GGTGGTGGTGGTGGCCGTGG+TGG 0.516604 3_3:+54528264 Msa0458640:CDS
TAAAATTAACCTGTTGATGT+GGG 0.517196 3_3:+54531949 Msa0458640:three_prime_UTR
GGTAATCGCGGTGGATTTGG+TGG 0.517464 3_3:+54529240 Msa0458640:CDS
GGCAGAGAAGATGGTGGCTA+TGG 0.517731 3_3:+54528985 Msa0458640:CDS
TACATGCTTCAAGATCTTCC+TGG 0.518554 3_3:-54531630 None:intergenic
AAAGGAAGCGGAAACGGTGG+TGG 0.520461 3_3:+54527964 Msa0458640:CDS
TCCAGACATGATTCGATCTA+GGG 0.521058 3_3:-54527812 None:intergenic
AACTATCCACCCACCTATGG+TGG 0.522301 3_3:+54529060 Msa0458640:CDS
CAATTCTGGTCCTGATAGGC+GGG 0.522423 3_3:+54530834 Msa0458640:CDS
GGAAACTATCCACCCACCTA+TGG 0.522424 3_3:+54529057 Msa0458640:CDS
GCTATGGTGGTGGATATGCT+GGG 0.522603 3_3:+54527914 Msa0458640:CDS
AAGACACACAACACTTCGAT+TGG 0.522667 3_3:-54532276 None:intergenic
ATAATTTGCATTCCCACCAT+AGG 0.522816 3_3:-54529073 None:intergenic
GAAGTGGCAGAGATGGAGAT+TGG 0.524419 3_3:+54528286 Msa0458640:CDS
TTCTTGAACTGGATGCTAAG+AGG 0.525525 3_3:+54530962 Msa0458640:three_prime_UTR
ATTTGCATTCCCACCATAGG+TGG 0.526139 3_3:-54529070 None:intergenic
CTACAAGCTGAAATTGATTG+AGG 0.526935 3_3:+54532369 Msa0458640:three_prime_UTR
TTGGAAGAATAAAGCAGAAG+AGG 0.529281 3_3:+54530048 Msa0458640:CDS
GGATAAATGCTTTACATCCC+TGG 0.529510 3_3:+54531217 Msa0458640:three_prime_UTR
GGTAATCAAGGCAGAGAAGA+TGG 0.534827 3_3:+54528976 Msa0458640:CDS
CAAATAATTGCTGCTAAGGT+AGG 0.535903 3_3:+54531116 Msa0458640:three_prime_UTR
GGAGGGTACGGTCACGATGC+CGG 0.536528 3_3:+54527832 Msa0458640:CDS
AATAACAATGATGGAAGAAG+TGG 0.537553 3_3:+54528925 Msa0458640:CDS
ATGCCACATGGGACGAGCCA+GGG 0.538600 3_3:-54531234 None:intergenic
GGAGGTGATGCACGGAGTGG+TGG 0.539236 3_3:+54529186 Msa0458640:CDS
TGCATGTTATATCTTTCCAT+CGG 0.540751 3_3:+54531980 Msa0458640:three_prime_UTR
GGAGATCGTGGTGGCCGAGG+TGG 0.541908 3_3:+54528246 Msa0458640:CDS
TGAGCAGCAGCAACAGGAGG+AGG 0.543685 3_3:-54529015 None:intergenic
AATGATTATAATGGTGGTAG+GGG 0.543956 3_3:+54528901 Msa0458640:CDS
AACAATGATGGAAGAAGTGG+AGG 0.547521 3_3:+54528928 Msa0458640:CDS
AGAGGGGTTATAAAGATCAA+TGG 0.552074 3_3:+54530066 Msa0458640:CDS
ATGGTGGAGGTTACGGTGGA+AGG 0.552221 3_3:+54528007 Msa0458640:CDS
GTAGTAGAAGTGAAATGCAT+TGG 0.555007 3_3:+54531886 Msa0458640:three_prime_UTR
TTCATATCCTCCTTCATATG+GGG 0.555323 3_3:+54529143 Msa0458640:CDS
TACTGTGAAATGTGGTCTAA+GGG 0.558476 3_3:+54530916 Msa0458640:three_prime_UTR
TTTATCCACATGATGACACT+TGG 0.558774 3_3:-54531201 None:intergenic
GGATATAATAGAGGAGGAAG+TGG 0.560959 3_3:+54528823 Msa0458640:CDS
GGAGGATATGGTGGAAGAGG+CGG 0.561314 3_3:+54528054 Msa0458640:CDS
GGGGTGGCTATGGTGGAGAT+AGG 0.562476 3_3:+54530803 Msa0458640:CDS
AATTCATCAACAGTCACATC+GGG 0.562494 3_3:-54529363 None:intergenic
AGTGGTACCGACCGTGGTGG+CGG 0.562644 3_3:+54528790 Msa0458640:CDS
AGAACTAATGATTATAATGG+TGG 0.563585 3_3:+54528895 Msa0458640:CDS
GGCTTGTACCAGATGCCACA+TGG 0.564372 3_3:-54531246 None:intergenic
GCCTCCACCGCCACCACGGT+CGG 0.564658 3_3:-54528797 None:intergenic
AACACGGGTGGTTATGGTGG+AGG 0.565229 3_3:+54529168 Msa0458640:CDS
GGCAGAGAAATCTGCACCAA+GGG 0.566623 3_3:+54530323 Msa0458640:CDS
TCTGCAGCTCACTCTGCTGG+TGG 0.567434 3_3:+54530164 Msa0458640:CDS
AGCTGAAATTGATTGAGGAC+TGG 0.569628 3_3:+54532374 Msa0458640:three_prime_UTR
GGCTTTCAAGGTGGAGATCG+TGG 0.572562 3_3:+54528234 Msa0458640:CDS
AGACAGAATCACTAATATCC+TGG 0.574213 3_3:-54531363 None:intergenic
GTAACCACCGCTAGCACCAT+AGG 0.574763 3_3:-54527872 None:intergenic
TGATGCACGGAGTGGTGGCA+GGG 0.575497 3_3:+54529191 Msa0458640:CDS
CACCGCCTCCACCGCCACCA+CGG 0.576143 3_3:-54528801 None:intergenic
ACTGGCTGTCAAGCAGCTCA+AGG 0.576539 3_3:+54531521 Msa0458640:three_prime_UTR
CGACGAAGAAAGCATCAAAA+GGG 0.576620 3_3:-54532312 None:intergenic
GGATATGCTGGGAATGAAAG+TGG 0.578903 3_3:+54527925 Msa0458640:CDS
CGTGGTGGAAGTGGCAGAGA+TGG 0.580429 3_3:+54528279 Msa0458640:CDS
CAATTCATCAACAGTCACAT+CGG 0.580763 3_3:-54529364 None:intergenic
TTACAAAATCAGTGTTGCAA+TGG 0.582254 3_3:+54530302 Msa0458640:CDS
GGCTATGGAGGTAACGATGG+TGG 0.582622 3_3:+54527991 Msa0458640:CDS
CAGAGGGATCTTCGTAAGCA+AGG 0.584671 3_3:-54530145 None:intergenic
CCAGTATAGCTTGTAGGTGG+AGG 0.590446 3_3:-54529111 None:intergenic
GGCGGTGGATATAATAGAGG+AGG 0.590760 3_3:+54528817 Msa0458640:CDS
GGTGGAAGGAGTGGATATGG+TGG 0.592851 3_3:+54528021 Msa0458640:CDS
AACGATGGCGGAGGATATGG+TGG 0.594596 3_3:+54528045 Msa0458640:CDS
GTGAAACAAATATCAACCGA+TGG 0.599348 3_3:-54531996 None:intergenic
GGAGGCGGTGGATATAATAG+AGG 0.601228 3_3:+54528814 Msa0458640:CDS
ACAATTCTGGTCCTGATAGG+CGG 0.601815 3_3:+54530833 Msa0458640:CDS
AGTTCTCAGACCTACCTCCT+CGG 0.603508 3_3:-54528864 None:intergenic
GACTGAGCAGCAGCAACAGG+AGG 0.605802 3_3:-54529018 None:intergenic
TACCCATGGTTATTTGCTGG+AGG 0.607300 3_3:-54530348 None:intergenic
CCTTCCTATGGTGCTAGCGG+TGG 0.607825 3_3:+54527868 Msa0458640:CDS
CTCCTCCAGCAAATAACCAT+GGG 0.607908 3_3:+54530346 Msa0458640:CDS
ATAGGCGGGATCATTATGGC+GGG 0.609988 3_3:+54530848 Msa0458640:CDS
GTTATGGTGGAGGTGATGCA+CGG 0.610928 3_3:+54529178 Msa0458640:CDS
AAGCAGTGCGATGAGAATTG+TGG 0.612091 3_3:+54529297 Msa0458640:CDS
TATGGTGGAAACGATGGCGG+AGG 0.613079 3_3:+54528036 Msa0458640:CDS
CAATGACAAAGCTCTAGTAT+GGG 0.614329 3_3:-54530882 None:intergenic
ATTGGCGTTGCCCTAACGAA+AGG 0.614670 3_3:+54528304 Msa0458640:CDS
GGTTACGGAGCTAAAGGAAG+CGG 0.616619 3_3:+54527952 Msa0458640:CDS
CCAGCAGAGTGAGCTGCAGA+GGG 0.616910 3_3:-54530161 None:intergenic
CCACGGTCGGTACCACTGGT+AGG 0.617898 3_3:-54528784 None:intergenic
CTAGATCGAATCATGTCTGG+AGG 0.618966 3_3:+54527814 Msa0458640:exon
GGTGGTGGAAGAGGCTATGG+AGG 0.620498 3_3:+54527979 Msa0458640:CDS
TTAAACCAAGTGTCATCATG+TGG 0.621366 3_3:+54531196 Msa0458640:three_prime_UTR
AGGAATGAATGTAACAAATG+TGG 0.621828 3_3:+54528751 Msa0458640:CDS
CGATTGGAAAGAAGCAGCAG+AGG 0.622622 3_3:-54532260 None:intergenic
TTTGCATTCCCACCATAGGT+GGG 0.624211 3_3:-54529069 None:intergenic
TATAATAGAGGAGGAAGTGG+CGG 0.624988 3_3:+54528826 Msa0458640:CDS
AGTGGATATGGTGGAAACGA+TGG 0.627730 3_3:+54528030 Msa0458640:CDS
GCTCCTCCAGCAAATAACCA+TGG 0.633052 3_3:+54530345 Msa0458640:CDS
ACTATCCACCCACCTATGGT+GGG 0.633383 3_3:+54529061 Msa0458640:CDS
GCTGGGAATGAAAGTGGCGG+TGG 0.633519 3_3:+54527931 Msa0458640:CDS
CCACCAGTATAGCTTGTAGG+TGG 0.635733 3_3:-54529114 None:intergenic
GGAAGAATAAAGCAGAAGAG+GGG 0.637899 3_3:+54530050 Msa0458640:CDS
TGTCAAGTGTTCACAGCCTG+AGG 0.639261 3_3:-54532342 None:intergenic
GGTGGAGGATATGGAGCTCG+AGG 0.639335 3_3:+54528099 Msa0458640:CDS
CCACCTACAAGCTATACTGG+TGG 0.639536 3_3:+54529114 Msa0458640:CDS
TATGGAGGTAACGATGGTGG+AGG 0.642481 3_3:+54527994 Msa0458640:CDS
AACGATGGTGGAGGTTACGG+TGG 0.645624 3_3:+54528003 Msa0458640:CDS
GGTGGTGGTGGCTTTCAAGG+TGG 0.646259 3_3:+54528225 Msa0458640:CDS
GCTGCTGCTCAGTCTTATGG+TGG 0.647073 3_3:+54529027 Msa0458640:CDS
CATCCCTGGCTCGTCCCATG+TGG 0.647934 3_3:+54531231 Msa0458640:three_prime_UTR
AAAATGCAAGTCTTCATCAG+AGG 0.648329 3_3:-54531683 None:intergenic
CCACCTTCCTATGGTGCTAG+CGG 0.648392 3_3:+54527865 Msa0458640:CDS
CCACTGTCATATCCAGCTTG+AGG 0.650585 3_3:-54529219 None:intergenic
GGTAGGTCTGAGAACTATGG+AGG 0.651960 3_3:+54528871 Msa0458640:CDS
ATAGCTTGTAGGTGGAGGAA+CGG 0.652251 3_3:-54529106 None:intergenic
TCATATCCTCCTTCATATGG+GGG 0.652342 3_3:+54529144 Msa0458640:CDS
GATAGGCGGGATCATTATGG+CGG 0.653402 3_3:+54530847 Msa0458640:CDS
AATAGGGGTGGTTCGTATGG+CGG 0.653577 3_3:+54528955 Msa0458640:CDS
CCTACCAGTGGTACCGACCG+TGG 0.654255 3_3:+54528784 Msa0458640:CDS
GCTTGTACCAGATGCCACAT+GGG 0.655830 3_3:-54531245 None:intergenic
GCATTCCCACCATAGGTGGG+TGG 0.656465 3_3:-54529066 None:intergenic
TCATCAACAGTCACATCGGG+TGG 0.658491 3_3:-54529360 None:intergenic
GGTGCTAGCGGTGGTTACGG+AGG 0.662292 3_3:+54527877 Msa0458640:CDS
GGGTACGGTCACGATGCCGG+AGG 0.664157 3_3:+54527835 Msa0458640:CDS
GGATATGGTGGAAACGATGG+CGG 0.665261 3_3:+54528033 Msa0458640:CDS
AGAGGCTATGGAGGTAACGA+TGG 0.666925 3_3:+54527988 Msa0458640:CDS
AAAGACATTGCACCAAACAG+AGG 0.667000 3_3:-54532557 None:intergenic
TATGACAGTGGTAATCGCGG+TGG 0.670681 3_3:+54529231 Msa0458640:CDS
TAGATCGAATCATGTCTGGA+GGG 0.672018 3_3:+54527815 Msa0458640:exon
TGGCAGAGAAATCTGCACCA+AGG 0.672792 3_3:+54530322 Msa0458640:CDS
CCACCGCTAGCACCATAGGA+AGG 0.678251 3_3:-54527868 None:intergenic
CCGCTAGCACCATAGGAAGG+TGG 0.679573 3_3:-54527865 None:intergenic
ATGACAGTAACCGAGGAGGT+AGG 0.680348 3_3:+54528854 Msa0458640:CDS
CATCTCTGCCACTTCCACCA+CGG 0.681837 3_3:-54528278 None:intergenic
GGTGGAGGTGATGCACGGAG+TGG 0.684645 3_3:+54529183 Msa0458640:CDS
GCTAAAGGAAGCGGAAACGG+TGG 0.692804 3_3:+54527961 Msa0458640:CDS
GGATATGACAGTGGTAATCG+CGG 0.695675 3_3:+54529228 Msa0458640:CDS
GGTACTCCGTGTCCTACCAG+TGG 0.706487 3_3:+54528772 Msa0458640:CDS
ACCAGTGGTACCGACCGTGG+TGG 0.709026 3_3:+54528787 Msa0458640:CDS
TCGGTACCACTGGTAGGACA+CGG 0.712971 3_3:-54528778 None:intergenic
ACAATGATGGAAGAAGTGGA+GGG 0.713610 3_3:+54528929 Msa0458640:CDS
GGAGGATATGACAGTAACCG+AGG 0.715633 3_3:+54528847 Msa0458640:CDS
AATCAAGGCAGAGAAGATGG+TGG 0.725920 3_3:+54528979 Msa0458640:CDS
TTTCAAGGTGGAGATCGTGG+TGG 0.727623 3_3:+54528237 Msa0458640:CDS
CCTCAAGCTGGATATGACAG+TGG 0.728107 3_3:+54529219 Msa0458640:CDS
TATGCTGGGAATGAAAGTGG+CGG 0.741408 3_3:+54527928 Msa0458640:CDS
AGTGGAGGGAGCAATAGGGG+TGG 0.742682 3_3:+54528943 Msa0458640:CDS
GGATATGACAGTAACCGAGG+AGG 0.745498 3_3:+54528850 Msa0458640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTTACATAGTTT+AGG + chr3_3:54528546-54528565 Msa0458640:intron 10.0%
!! TATTATATTTACATAGTTTA+GGG + chr3_3:54528547-54528566 Msa0458640:intron 10.0%
!!! AATTTTTTTTTTATCACAAA+TGG + chr3_3:54529456-54529475 Msa0458640:intron 10.0%
!!! AATTTATGTTTTTTTCAATT+TGG + chr3_3:54530609-54530628 Msa0458640:intron 10.0%
!!! TAATAATTTGTAAGATTTTT+CGG + chr3_3:54532131-54532150 Msa0458640:three_prime_UTR 10.0%
!! TATTGTTATATATATAGTTG+TGG + chr3_3:54528709-54528728 Msa0458640:intron 15.0%
!! ATTGTTATATATATAGTTGT+GGG + chr3_3:54528710-54528729 Msa0458640:intron 15.0%
!!! TTTATTTTTTCATTCTCTTT+GGG + chr3_3:54529967-54529986 Msa0458640:intron 15.0%
!!! TTTTGTACTTTACATTTATT+TGG + chr3_3:54530634-54530653 Msa0458640:intron 15.0%
!!! TTATATGAATGTTTTTATAG+AGG + chr3_3:54531078-54531097 Msa0458640:intron 15.0%
!!! ATATATCAGTTATATTTTGA+TGG + chr3_3:54531296-54531315 Msa0458640:three_prime_UTR 15.0%
!! ATTATACCAATGAAAAATTA+TGG - chr3_3:54532048-54532067 None:intergenic 15.0%
!! ATAATGCTTATAAATACAAA+TGG - chr3_3:54532105-54532124 None:intergenic 15.0%
!!! AAAAAAATTATGATTTTCCG+TGG + chr3_3:54528345-54528364 Msa0458640:intron 20.0%
!! AATTTACAAAACTAAACTGA+TGG - chr3_3:54528391-54528410 None:intergenic 20.0%
!! TTTCTGCAATTAAGATATTA+GGG + chr3_3:54528451-54528470 Msa0458640:intron 20.0%
!! TTATTATGTTTACATGGTTT+AGG + chr3_3:54528583-54528602 Msa0458640:intron 20.0%
!! CAATATGTATCTCAAAAATA+TGG - chr3_3:54529541-54529560 None:intergenic 20.0%
!!! TAGGTTTATATTTTCATTAG+AGG + chr3_3:54529607-54529626 Msa0458640:intron 20.0%
!! CTATCACCAAAAAAAAAAAA+AGG + chr3_3:54529754-54529773 Msa0458640:intron 20.0%
!! TTAGAAGAATAAAGCAAAAA+GGG + chr3_3:54529936-54529955 Msa0458640:intron 20.0%
!!! GTTTATTTTTTCATTCTCTT+TGG + chr3_3:54529966-54529985 Msa0458640:intron 20.0%
!!! GTGTAAATTTTAATGTTGTA+AGG - chr3_3:54530092-54530111 None:intergenic 20.0%
!!! ATTTTCAGATTATGATTTGA+GGG + chr3_3:54530278-54530297 Msa0458640:intron 20.0%
!! TCATCATAACATTAATGTAA+AGG + chr3_3:54530572-54530591 Msa0458640:intron 20.0%
!!! ATTGTTCTTCTTTGTTTTAT+AGG + chr3_3:54530773-54530792 Msa0458640:intron 20.0%
!!! TTGTTCTTCTTTGTTTTATA+GGG + chr3_3:54530774-54530793 Msa0458640:intron 20.0%
!!! TTTAAAGCAATTTTATTACC+AGG + chr3_3:54531612-54531631 Msa0458640:three_prime_UTR 20.0%
!!! AAGTAGTAAAACTGTTTTTT+TGG + chr3_3:54531781-54531800 Msa0458640:three_prime_UTR 20.0%
!!! TGTTTTTTTGGATGAAATTA+AGG + chr3_3:54531793-54531812 Msa0458640:three_prime_UTR 20.0%
!!! GTTTTTTTGGATGAAATTAA+GGG + chr3_3:54531794-54531813 Msa0458640:three_prime_UTR 20.0%
!!! TTTTTTTGGATGAAATTAAG+GGG + chr3_3:54531795-54531814 Msa0458640:three_prime_UTR 20.0%
!!! ATTGATATAGTTGATCTTTT+TGG + chr3_3:54531856-54531875 Msa0458640:three_prime_UTR 20.0%
!!! TTGATATAGTTGATCTTTTT+GGG + chr3_3:54531857-54531876 Msa0458640:three_prime_UTR 20.0%
!! ATCTATTGCTAAAAAAATAG+GGG - chr3_3:54532427-54532446 None:intergenic 20.0%
!! GATCTATTGCTAAAAAAATA+GGG - chr3_3:54532428-54532447 None:intergenic 20.0%
!!! TTTATTGCTTTCTTTTTCTT+TGG + chr3_3:54532508-54532527 Msa0458640:three_prime_UTR 20.0%
! AAATGAAATACCTTTCGTTA+GGG - chr3_3:54528317-54528336 None:intergenic 25.0%
! AAAATGAAATACCTTTCGTT+AGG - chr3_3:54528318-54528337 None:intergenic 25.0%
! ATTCTTAATAACAAGTACCA+CGG - chr3_3:54528365-54528384 None:intergenic 25.0%
!!! TGATGGGTTTTATATTCTTT+AGG - chr3_3:54528425-54528444 None:intergenic 25.0%
! ATTGCAGAAACTAAATTGAT+GGG - chr3_3:54528441-54528460 None:intergenic 25.0%
! AATTGCAGAAACTAAATTGA+TGG - chr3_3:54528442-54528461 None:intergenic 25.0%
! GTTTCTGCAATTAAGATATT+AGG + chr3_3:54528450-54528469 Msa0458640:intron 25.0%
! TTCTGCAATTAAGATATTAG+GGG + chr3_3:54528452-54528471 Msa0458640:intron 25.0%
!! TGACGAATTTTATATAGCTT+AGG + chr3_3:54528517-54528536 Msa0458640:intron 25.0%
!! GACGAATTTTATATAGCTTA+GGG + chr3_3:54528518-54528537 Msa0458640:intron 25.0%
! TTTACATAGTTTAGGGATTT+AGG + chr3_3:54528554-54528573 Msa0458640:intron 25.0%
! TTACATAGTTTAGGGATTTA+GGG + chr3_3:54528555-54528574 Msa0458640:intron 25.0%
! GACAACTTATTATGTTTACA+TGG + chr3_3:54528577-54528596 Msa0458640:intron 25.0%
! GGTAGAACTAATGATTATAA+TGG + chr3_3:54528892-54528911 Msa0458640:CDS 25.0%
! AGAACTAATGATTATAATGG+TGG + chr3_3:54528895-54528914 Msa0458640:CDS 25.0%
! TAATGATTATAATGGTGGTA+GGG + chr3_3:54528900-54528919 Msa0458640:CDS 25.0%
!!! ACTTGAATTTACTCTGAAAT+TGG - chr3_3:54529500-54529519 None:intergenic 25.0%
! ACAAATGTAACAAAATGTCT+AGG - chr3_3:54529642-54529661 None:intergenic 25.0%
!!! TTTGTTTTAACTTCCTATGT+TGG + chr3_3:54529657-54529676 Msa0458640:intron 25.0%
!!! TGCAAGCCTTTTTTTTTTTT+TGG - chr3_3:54529763-54529782 None:intergenic 25.0%
!! TTGCTTTATTCTTCTAACTT+AGG - chr3_3:54529933-54529952 None:intergenic 25.0%
! GTTAGAAGAATAAAGCAAAA+AGG + chr3_3:54529935-54529954 Msa0458640:intron 25.0%
! TAGAAGAATAAAGCAAAAAG+GGG + chr3_3:54529937-54529956 Msa0458640:intron 25.0%
! AAAATTTACACCGATGAAAA+CGG + chr3_3:54530101-54530120 Msa0458640:CDS 25.0%
!! CATTTTCAGATTATGATTTG+AGG + chr3_3:54530277-54530296 Msa0458640:intron 25.0%
!! TTTTCAGATTATGATTTGAG+GGG + chr3_3:54530279-54530298 Msa0458640:intron 25.0%
! TTAAGCATAAATGTTGTAAG+TGG + chr3_3:54530524-54530543 Msa0458640:intron 25.0%
!!! TAGTTTTGAACTTCAAGAAA+GGG - chr3_3:54530753-54530772 None:intergenic 25.0%
!!! TTAGTTTTGAACTTCAAGAA+AGG - chr3_3:54530754-54530773 None:intergenic 25.0%
!!! TGTTCTTCTTTGTTTTATAG+GGG + chr3_3:54530775-54530794 Msa0458640:intron 25.0%
! AAGGGATTTATTATTTCAGT+TGG + chr3_3:54530934-54530953 Msa0458640:three_prime_UTR 25.0%
! AACACACTAAATGGAATTAA+TGG - chr3_3:54531324-54531343 None:intergenic 25.0%
!!! TATATACTGTTTTGAAAGCA+AGG + chr3_3:54531428-54531447 Msa0458640:three_prime_UTR 25.0%
!!! ACAGGTTAATTTTAGAAAGA+AGG - chr3_3:54531943-54531962 None:intergenic 25.0%
! TAAAATTAACCTGTTGATGT+GGG + chr3_3:54531949-54531968 Msa0458640:three_prime_UTR 25.0%
!! TCAACTCCATAATTTTTCAT+TGG + chr3_3:54532039-54532058 Msa0458640:three_prime_UTR 25.0%
!! AAAATTGACTTCCAATTGAT+GGG - chr3_3:54532235-54532254 None:intergenic 25.0%
! TCTATTGCTAAAAAAATAGG+GGG - chr3_3:54532426-54532445 None:intergenic 25.0%
! GGATCTATTGCTAAAAAAAT+AGG - chr3_3:54532429-54532448 None:intergenic 25.0%
!! TTATTGGTAATTCAAGTAAC+TGG - chr3_3:54532640-54532659 None:intergenic 25.0%
! GGATTGATGTGATTTTAAAC+AGG + chr3_3:54528195-54528214 Msa0458640:intron 30.0%
! TTGATGTGATTTTAAACAGG+TGG + chr3_3:54528198-54528217 Msa0458640:intron 30.0%
AGGAATGAATGTAACAAATG+TGG + chr3_3:54528751-54528770 Msa0458640:CDS 30.0%
CTAATGATTATAATGGTGGT+AGG + chr3_3:54528899-54528918 Msa0458640:CDS 30.0%
AATGATTATAATGGTGGTAG+GGG + chr3_3:54528901-54528920 Msa0458640:CDS 30.0%
! AATAACAATGATGGAAGAAG+TGG + chr3_3:54528925-54528944 Msa0458640:CDS 30.0%
TATGAAGGAGGATATGAATT+AGG - chr3_3:54529141-54529160 None:intergenic 30.0%
AATTCATATCCTCCTTCATA+TGG + chr3_3:54529141-54529160 Msa0458640:CDS 30.0%
ATTCATATCCTCCTTCATAT+GGG + chr3_3:54529142-54529161 Msa0458640:CDS 30.0%
ATATATTCCTGTTGTACTTG+TGG + chr3_3:54529581-54529600 Msa0458640:intron 30.0%
TTGGAAGAATAAAGCAGAAA+AGG + chr3_3:54529676-54529695 Msa0458640:intron 30.0%
TGGAAGAATAAAGCAGAAAA+GGG + chr3_3:54529677-54529696 Msa0458640:intron 30.0%
!! TTCTCTTTGAGAAGTATTAG+AGG + chr3_3:54529721-54529740 Msa0458640:intron 30.0%
!! TTTTTGGTGATAGAATGTTG+AGG - chr3_3:54529747-54529766 None:intergenic 30.0%
TAAAGCAGAAAAGAGGTAAT+AGG + chr3_3:54529832-54529851 Msa0458640:intron 30.0%
! ACAAAATGTCTAGAATGTTG+AGG - chr3_3:54529893-54529912 None:intergenic 30.0%
!!! CTTGTTTTTTCCGTTTTCAT+CGG - chr3_3:54530114-54530133 None:intergenic 30.0%
GATGAAAACGGAAAAAACAA+GGG + chr3_3:54530113-54530132 Msa0458640:CDS 30.0%
TTACAAAATCAGTGTTGCAA+TGG + chr3_3:54530302-54530321 Msa0458640:CDS 30.0%
ATATGCTAACGTTGTAGATT+TGG + chr3_3:54530408-54530427 Msa0458640:intron 30.0%
AAACACTCAAACGTATAACA+TGG - chr3_3:54530705-54530724 None:intergenic 30.0%
!!! AGTTTTGAACTTCAAGAAAG+GGG - chr3_3:54530752-54530771 None:intergenic 30.0%
!!! TTTGTTTTATAGGGGCAATA+GGG + chr3_3:54530783-54530802 Msa0458640:intron 30.0%
! GTTTTATGTACTGTGAAATG+TGG + chr3_3:54530908-54530927 Msa0458640:three_prime_UTR 30.0%
GATTTATTATTTCAGTTGGC+TGG + chr3_3:54530938-54530957 Msa0458640:three_prime_UTR 30.0%
!!! GTGGGTTTTGATTTTAATCA+GGG + chr3_3:54531045-54531064 Msa0458640:intron 30.0%
!! AATGTTTTTATAGAGGCATG+TGG + chr3_3:54531085-54531104 Msa0458640:intron 30.0%
!! TAAGGTAGGTTGATTATTTC+AGG + chr3_3:54531130-54531149 Msa0458640:three_prime_UTR 30.0%
CTATTCATTAATTCATTCGC+TGG - chr3_3:54531270-54531289 None:intergenic 30.0%
!!! AACACTTTTAAAGTCTGTTG+AGG - chr3_3:54531583-54531602 None:intergenic 30.0%
CTAAAATTAACCTGTTGATG+TGG + chr3_3:54531948-54531967 Msa0458640:three_prime_UTR 30.0%
TGCATGTTATATCTTTCCAT+CGG + chr3_3:54531980-54531999 Msa0458640:three_prime_UTR 30.0%
!! ATTTTTCGGTGAGTTAGTTT+GGG + chr3_3:54532145-54532164 Msa0458640:three_prime_UTR 30.0%
ATTCTTATACACCCATCAAT+TGG + chr3_3:54532221-54532240 Msa0458640:three_prime_UTR 30.0%
! CAAAATTGACTTCCAATTGA+TGG - chr3_3:54532236-54532255 None:intergenic 30.0%
CTATTGCTAAAAAAATAGGG+GGG - chr3_3:54532425-54532444 None:intergenic 30.0%
ATAGTCTACGATTTCTTCAT+TGG - chr3_3:54532450-54532469 None:intergenic 30.0%
!! ATGATGAGCTAGATTTTTAG+TGG + chr3_3:54532478-54532497 Msa0458640:three_prime_UTR 30.0%
!!! TGATGAGCTAGATTTTTAGT+GGG + chr3_3:54532479-54532498 Msa0458640:three_prime_UTR 30.0%
! TTGCTTTCTTTTTCTTTGGT+AGG + chr3_3:54532512-54532531 Msa0458640:three_prime_UTR 30.0%
ATGTACACAATGTTGAAGAA+AGG - chr3_3:54532585-54532604 None:intergenic 30.0%
AAATCTCACTTTCTCTCTTG+TGG + chr3_3:54527779-54527798 Msa0458640:five_prime_UTR 35.0%
TATCGTGTCTTTAATTGCTG+TGG + chr3_3:54528174-54528193 Msa0458640:intron 35.0%
! ATGTGATTTTAAACAGGTGG+TGG + chr3_3:54528201-54528220 Msa0458640:intron 35.0%
GATATTAGGGGCTAAAATGA+CGG + chr3_3:54528464-54528483 Msa0458640:intron 35.0%
TCAACTTAGTCTCTAACTGT+AGG - chr3_3:54528500-54528519 None:intergenic 35.0%
ACATGGTTTAGGTGCTAAAT+CGG + chr3_3:54528594-54528613 Msa0458640:intron 35.0%
AAATCGGAGAGTGATAGTTT+AGG + chr3_3:54528610-54528629 Msa0458640:intron 35.0%
AATCGGAGAGTGATAGTTTA+GGG + chr3_3:54528611-54528630 Msa0458640:intron 35.0%
GGAACAATAACTTTGCTAGA+AGG + chr3_3:54528731-54528750 Msa0458640:CDS 35.0%
! ATAATTTGCATTCCCACCAT+AGG - chr3_3:54529076-54529095 None:intergenic 35.0%
! TATGGTGGGAATGCAAATTA+TGG + chr3_3:54529075-54529094 Msa0458640:CDS 35.0%
TTCATATCCTCCTTCATATG+GGG + chr3_3:54529143-54529162 Msa0458640:CDS 35.0%
AATTCATCAACAGTCACATC+GGG - chr3_3:54529366-54529385 None:intergenic 35.0%
CAATTCATCAACAGTCACAT+CGG - chr3_3:54529367-54529386 None:intergenic 35.0%
! GATGAATTGCAGCAACTTTT+TGG + chr3_3:54529378-54529397 Msa0458640:CDS 35.0%
! AATGTTCTGATCTGTTGACT+TGG + chr3_3:54529416-54529435 Msa0458640:intron 35.0%
! CTGCTTTATTCTTCCAACAT+AGG - chr3_3:54529673-54529692 None:intergenic 35.0%
GGAAGAATAAAGCAGAAAAG+GGG + chr3_3:54529678-54529697 Msa0458640:intron 35.0%
TAAAGCAGAAAAGGGGAAAT+AGG + chr3_3:54529685-54529704 Msa0458640:intron 35.0%
! CTGCTTTATTCTTCCAACTT+AGG - chr3_3:54529820-54529839 None:intergenic 35.0%
GGAAGAATAAAGCAGAAAAG+AGG + chr3_3:54529678-54529697 Msa0458640:intron 35.0%
TTCTCTTTGCGAAGAATTAG+AGG + chr3_3:54529867-54529886 Msa0458640:intron 35.0%
ATGTAACAGAACGTCTAGAA+TGG - chr3_3:54530010-54530029 None:intergenic 35.0%
TTGGAAGAATAAAGCAGAAG+AGG + chr3_3:54530048-54530067 Msa0458640:CDS 35.0%
TGGAAGAATAAAGCAGAAGA+GGG + chr3_3:54530049-54530068 Msa0458640:CDS 35.0%
AGAGGGGTTATAAAGATCAA+TGG + chr3_3:54530066-54530085 Msa0458640:CDS 35.0%
CGATGAAAACGGAAAAAACA+AGG + chr3_3:54530112-54530131 Msa0458640:CDS 35.0%
AGCATATCATTCATCTCCAA+CGG - chr3_3:54530395-54530414 None:intergenic 35.0%
GTAGATTTGGATCGAAAACA+TGG + chr3_3:54530421-54530440 Msa0458640:intron 35.0%
!!! CTTTGTTTTATAGGGGCAAT+AGG + chr3_3:54530782-54530801 Msa0458640:intron 35.0%
!! TTGTTTTATAGGGGCAATAG+GGG + chr3_3:54530784-54530803 Msa0458640:intron 35.0%
! CAATGACAAAGCTCTAGTAT+GGG - chr3_3:54530885-54530904 None:intergenic 35.0%
! TCAATGACAAAGCTCTAGTA+TGG - chr3_3:54530886-54530905 None:intergenic 35.0%
TACTGTGAAATGTGGTCTAA+GGG + chr3_3:54530916-54530935 Msa0458640:three_prime_UTR 35.0%
CAGCTAACAACAGAAAAAAC+AGG - chr3_3:54531025-54531044 None:intergenic 35.0%
!!! CTGTTTTTTCTGTTGTTAGC+TGG + chr3_3:54531023-54531042 Msa0458640:intron 35.0%
!!! TTTTTTCTGTTGTTAGCTGG+TGG + chr3_3:54531026-54531045 Msa0458640:intron 35.0%
! TTTTTCTGTTGTTAGCTGGT+GGG + chr3_3:54531027-54531046 Msa0458640:intron 35.0%
!!! GGTGGGTTTTGATTTTAATC+AGG + chr3_3:54531044-54531063 Msa0458640:intron 35.0%
TCTCCAAATAATTGCTGCTA+AGG + chr3_3:54531112-54531131 Msa0458640:three_prime_UTR 35.0%
CTACCTTAGCAGCAATTATT+TGG - chr3_3:54531118-54531137 None:intergenic 35.0%
CAAATAATTGCTGCTAAGGT+AGG + chr3_3:54531116-54531135 Msa0458640:three_prime_UTR 35.0%
TTAAACCAAGTGTCATCATG+TGG + chr3_3:54531196-54531215 Msa0458640:three_prime_UTR 35.0%
TTTATCCACATGATGACACT+TGG - chr3_3:54531204-54531223 None:intergenic 35.0%
AGACAGAATCACTAATATCC+TGG - chr3_3:54531366-54531385 None:intergenic 35.0%
!! GACGAGTTTTGATAACTAAC+TGG + chr3_3:54531503-54531522 Msa0458640:three_prime_UTR 35.0%
AAAATGCAAGTCTTCATCAG+AGG - chr3_3:54531686-54531705 None:intergenic 35.0%
!! AGTTGATCTTTTTGGGAACA+TGG + chr3_3:54531864-54531883 Msa0458640:three_prime_UTR 35.0%
GTAGTAGAAGTGAAATGCAT+TGG + chr3_3:54531886-54531905 Msa0458640:three_prime_UTR 35.0%
GTGAAACAAATATCAACCGA+TGG - chr3_3:54531999-54532018 None:intergenic 35.0%
!! GATTTTTCGGTGAGTTAGTT+TGG + chr3_3:54532144-54532163 Msa0458640:three_prime_UTR 35.0%
CTACAAGCTGAAATTGATTG+AGG + chr3_3:54532369-54532388 Msa0458640:three_prime_UTR 35.0%
AGTAACTGGCACATCATTAT+TGG - chr3_3:54532626-54532645 None:intergenic 35.0%
TCCAGACATGATTCGATCTA+GGG - chr3_3:54527815-54527834 None:intergenic 40.0%
TAGATCGAATCATGTCTGGA+GGG + chr3_3:54527815-54527834 Msa0458640:exon 40.0%
!! TGATTTTAAACAGGTGGTGG+CGG + chr3_3:54528204-54528223 Msa0458640:intron 40.0%
GGATATAATAGAGGAGGAAG+TGG + chr3_3:54528823-54528842 Msa0458640:CDS 40.0%
TATAATAGAGGAGGAAGTGG+CGG + chr3_3:54528826-54528845 Msa0458640:CDS 40.0%
GGTAGGGGTAATAACAATGA+TGG + chr3_3:54528916-54528935 Msa0458640:CDS 40.0%
! AACAATGATGGAAGAAGTGG+AGG + chr3_3:54528928-54528947 Msa0458640:CDS 40.0%
! ACAATGATGGAAGAAGTGGA+GGG + chr3_3:54528929-54528948 Msa0458640:CDS 40.0%
TCATATCCTCCTTCATATGG+GGG + chr3_3:54529144-54529163 Msa0458640:CDS 40.0%
! GAATTGCAGCAACTTTTTGG+AGG + chr3_3:54529381-54529400 Msa0458640:CDS 40.0%
CCTATTACCACAAGTACAAC+AGG - chr3_3:54529591-54529610 None:intergenic 40.0%
CCTGTTGTACTTGTGGTAAT+AGG + chr3_3:54529588-54529607 Msa0458640:intron 40.0%
ATAAAGCAAAAAGGGGTAGC+AGG + chr3_3:54529944-54529963 Msa0458640:intron 40.0%
!! TTCTCTTTGGGAAGTATCAG+TGG + chr3_3:54529979-54529998 Msa0458640:intron 40.0%
! TACATGTGTTTTCACTGCCT+AGG + chr3_3:54530025-54530044 Msa0458640:intron 40.0%
! CTGCTTTATTCTTCCAACCT+AGG - chr3_3:54530045-54530064 None:intergenic 40.0%
GGAAGAATAAAGCAGAAGAG+GGG + chr3_3:54530050-54530069 Msa0458640:CDS 40.0%
! TCTGCTGGTGGTTTTTACAA+CGG + chr3_3:54530176-54530195 Msa0458640:CDS 40.0%
TACACACTGTATCTATCCGT+TGG + chr3_3:54530376-54530395 Msa0458640:intron 40.0%
GTACTGTGAAATGTGGTCTA+AGG + chr3_3:54530915-54530934 Msa0458640:three_prime_UTR 40.0%
TTCTTGAACTGGATGCTAAG+AGG + chr3_3:54530962-54530981 Msa0458640:three_prime_UTR 40.0%
GGATAAATGCTTTACATCCC+TGG + chr3_3:54531217-54531236 Msa0458640:three_prime_UTR 40.0%
TACATGCTTCAAGATCTTCC+TGG - chr3_3:54531633-54531652 None:intergenic 40.0%
GGAAGATCTTGAAGCATGTA+TGG + chr3_3:54531633-54531652 Msa0458640:three_prime_UTR 40.0%
!! ATTATATTGGCTCATCGCGT+TGG + chr3_3:54532075-54532094 Msa0458640:three_prime_UTR 40.0%
!! TTATATTGGCTCATCGCGTT+GGG + chr3_3:54532076-54532095 Msa0458640:three_prime_UTR 40.0%
AAGACACACAACACTTCGAT+TGG - chr3_3:54532279-54532298 None:intergenic 40.0%
!! AATCGAAGTGTTGTGTGTCT+TGG + chr3_3:54532278-54532297 Msa0458640:three_prime_UTR 40.0%
TTGTGTGTCTTGGCATCTTA+CGG + chr3_3:54532288-54532307 Msa0458640:three_prime_UTR 40.0%
!! CGACGAAGAAAGCATCAAAA+GGG - chr3_3:54532315-54532334 None:intergenic 40.0%
AGCTGAAATTGATTGAGGAC+TGG + chr3_3:54532374-54532393 Msa0458640:three_prime_UTR 40.0%
AAAGACATTGCACCAAACAG+AGG - chr3_3:54532560-54532579 None:intergenic 40.0%
!! TCTGTTTGGTGCAATGTCTT+TGG + chr3_3:54532559-54532578 Msa0458640:three_prime_UTR 40.0%
ACCCTAGATCGAATCATGTC+TGG + chr3_3:54527811-54527830 Msa0458640:exon 45.0%
CTCCAGACATGATTCGATCT+AGG - chr3_3:54527816-54527835 None:intergenic 45.0%
CTAGATCGAATCATGTCTGG+AGG + chr3_3:54527814-54527833 Msa0458640:exon 45.0%
GGATATGCTGGGAATGAAAG+TGG + chr3_3:54527925-54527944 Msa0458640:CDS 45.0%
TATGCTGGGAATGAAAGTGG+CGG + chr3_3:54527928-54527947 Msa0458640:CDS 45.0%
AATGAAAGTGGCGGTGGTTA+CGG + chr3_3:54527937-54527956 Msa0458640:CDS 45.0%
! AGTGGATATGGTGGAAACGA+TGG + chr3_3:54528030-54528049 Msa0458640:CDS 45.0%
AAGAAGTGGAGGGAGCAATA+GGG + chr3_3:54528939-54528958 Msa0458640:CDS 45.0%
GGTAATCAAGGCAGAGAAGA+TGG + chr3_3:54528976-54528995 Msa0458640:CDS 45.0%
AATCAAGGCAGAGAAGATGG+TGG + chr3_3:54528979-54528998 Msa0458640:CDS 45.0%
TTTGCATTCCCACCATAGGT+GGG - chr3_3:54529072-54529091 None:intergenic 45.0%
ATTTGCATTCCCACCATAGG+TGG - chr3_3:54529073-54529092 None:intergenic 45.0%
! ATAGCTTGTAGGTGGAGGAA+CGG - chr3_3:54529109-54529128 None:intergenic 45.0%
TCCTTCATATGGGGGTAACA+CGG + chr3_3:54529152-54529171 Msa0458640:CDS 45.0%
GGATATGACAGTGGTAATCG+CGG + chr3_3:54529228-54529247 Msa0458640:CDS 45.0%
AAGCAGTGCGATGAGAATTG+TGG + chr3_3:54529297-54529316 Msa0458640:CDS 45.0%
!! CAGCAACTTTTTGGAGGCAT+TGG + chr3_3:54529387-54529406 Msa0458640:CDS 45.0%
!!! CGCGTTTTAACTGCCTAAGT+TGG + chr3_3:54529804-54529823 Msa0458640:intron 45.0%
! ACAGAACGTCTAGAATGGTG+AGG - chr3_3:54530005-54530024 None:intergenic 45.0%
! TGTGTTTTCACTGCCTAGGT+TGG + chr3_3:54530029-54530048 Msa0458640:intron 45.0%
CTCCTCCAGCAAATAACCAT+GGG + chr3_3:54530346-54530365 Msa0458640:CDS 45.0%
! TACCCATGGTTATTTGCTGG+AGG - chr3_3:54530351-54530370 None:intergenic 45.0%
GCATACCCATGGTTATTTGC+TGG - chr3_3:54530354-54530373 None:intergenic 45.0%
CAGTGTGTAATGCATACCCA+TGG - chr3_3:54530365-54530384 None:intergenic 45.0%
! TTTTATAGGGGCAATAGGGG+TGG + chr3_3:54530787-54530806 Msa0458640:intron 45.0%
GAGACAATTCTGGTCCTGAT+AGG + chr3_3:54530830-54530849 Msa0458640:CDS 45.0%
ACAATTCTGGTCCTGATAGG+CGG + chr3_3:54530833-54530852 Msa0458640:CDS 45.0%
!! AGTTGGCTGGTTTCTTGAAC+TGG + chr3_3:54530951-54530970 Msa0458640:three_prime_UTR 45.0%
TGAACTGGATGCTAAGAGGT+AGG + chr3_3:54530966-54530985 Msa0458640:intron 45.0%
CAGAAAAAACAGGAGCGAAG+AGG - chr3_3:54531015-54531034 None:intergenic 45.0%
TGCGCTCGAAACACACTAAA+TGG - chr3_3:54531333-54531352 None:intergenic 45.0%
!!! CGAGCGCAATTTGTTTTACC+AGG + chr3_3:54531345-54531364 Msa0458640:three_prime_UTR 45.0%
AATGATGCTCCCACATCAAC+AGG - chr3_3:54531961-54531980 None:intergenic 45.0%
!! GCGACGAAGAAAGCATCAAA+AGG - chr3_3:54532316-54532335 None:intergenic 45.0%
TGGTTCATGTGTCCTCTGTT+TGG + chr3_3:54532545-54532564 Msa0458640:three_prime_UTR 45.0%
!! ATAAAATAAAATAAAAGATA+TGG - chr3_3:54530493-54530512 None:intergenic 5.0%
!! TATAATTACTATTATTATAT+TGG + chr3_3:54532062-54532081 Msa0458640:three_prime_UTR 5.0%
CGAATCATGTCTGGAGGGTA+CGG + chr3_3:54527820-54527839 Msa0458640:exon 50.0%
! TATGGTGCTAGCGGTGGTTA+CGG + chr3_3:54527874-54527893 Msa0458640:CDS 50.0%
!! GCTATGGTGGTGGATATGCT+GGG + chr3_3:54527914-54527933 Msa0458640:CDS 50.0%
GGTTACGGAGCTAAAGGAAG+CGG + chr3_3:54527952-54527971 Msa0458640:CDS 50.0%
GGAGCTAAAGGAAGCGGAAA+CGG + chr3_3:54527958-54527977 Msa0458640:CDS 50.0%
AGAGGCTATGGAGGTAACGA+TGG + chr3_3:54527988-54528007 Msa0458640:CDS 50.0%
! TATGGAGGTAACGATGGTGG+AGG + chr3_3:54527994-54528013 Msa0458640:CDS 50.0%
!! GGTAACGATGGTGGAGGTTA+CGG + chr3_3:54528000-54528019 Msa0458640:CDS 50.0%
TACGGTGGAAGGAGTGGATA+TGG + chr3_3:54528018-54528037 Msa0458640:CDS 50.0%
! GGATATGGTGGAAACGATGG+CGG + chr3_3:54528033-54528052 Msa0458640:CDS 50.0%
!!! TTTTAAACAGGTGGTGGCGG+TGG + chr3_3:54528207-54528226 Msa0458640:intron 50.0%
TTTCAAGGTGGAGATCGTGG+TGG + chr3_3:54528237-54528256 Msa0458640:CDS 50.0%
GAAGTGGCAGAGATGGAGAT+TGG + chr3_3:54528286-54528305 Msa0458640:CDS 50.0%
ATTGGCGTTGCCCTAACGAA+AGG + chr3_3:54528304-54528323 Msa0458640:CDS 50.0%
GGAGGCGGTGGATATAATAG+AGG + chr3_3:54528814-54528833 Msa0458640:CDS 50.0%
GGCGGTGGATATAATAGAGG+AGG + chr3_3:54528817-54528836 Msa0458640:CDS 50.0%
GGAGGATATGACAGTAACCG+AGG + chr3_3:54528847-54528866 Msa0458640:CDS 50.0%
GGATATGACAGTAACCGAGG+AGG + chr3_3:54528850-54528869 Msa0458640:CDS 50.0%
ATGACAGTAACCGAGGAGGT+AGG + chr3_3:54528854-54528873 Msa0458640:CDS 50.0%
AGTTCTCAGACCTACCTCCT+CGG - chr3_3:54528867-54528886 None:intergenic 50.0%
GGAGGTAGGTCTGAGAACTA+TGG + chr3_3:54528868-54528887 Msa0458640:CDS 50.0%
GGTAGGTCTGAGAACTATGG+AGG + chr3_3:54528871-54528890 Msa0458640:CDS 50.0%
GAAGAAGTGGAGGGAGCAAT+AGG + chr3_3:54528938-54528957 Msa0458640:CDS 50.0%
AGAAGTGGAGGGAGCAATAG+GGG + chr3_3:54528940-54528959 Msa0458640:CDS 50.0%
AGCAATAGGGGTGGTTCGTA+TGG + chr3_3:54528952-54528971 Msa0458640:CDS 50.0%
AATAGGGGTGGTTCGTATGG+CGG + chr3_3:54528955-54528974 Msa0458640:CDS 50.0%
GGTTCGTATGGCGGTAATCA+AGG + chr3_3:54528964-54528983 Msa0458640:CDS 50.0%
TAAGACTGAGCAGCAGCAAC+AGG - chr3_3:54529024-54529043 None:intergenic 50.0%
GTTGCTGCTGCTCAGTCTTA+TGG + chr3_3:54529024-54529043 Msa0458640:CDS 50.0%
GGAAACTATCCACCCACCTA+TGG + chr3_3:54529057-54529076 Msa0458640:CDS 50.0%
AACTATCCACCCACCTATGG+TGG + chr3_3:54529060-54529079 Msa0458640:CDS 50.0%
ACTATCCACCCACCTATGGT+GGG + chr3_3:54529061-54529080 Msa0458640:CDS 50.0%
! CCAGTATAGCTTGTAGGTGG+AGG - chr3_3:54529114-54529133 None:intergenic 50.0%
CCTCCACCTACAAGCTATAC+TGG + chr3_3:54529111-54529130 Msa0458640:CDS 50.0%
! CCACCAGTATAGCTTGTAGG+TGG - chr3_3:54529117-54529136 None:intergenic 50.0%
CCACCTACAAGCTATACTGG+TGG + chr3_3:54529114-54529133 Msa0458640:CDS 50.0%
! GGTCCACCAGTATAGCTTGT+AGG - chr3_3:54529120-54529139 None:intergenic 50.0%
GTGTTACCCCCATATGAAGG+AGG - chr3_3:54529153-54529172 None:intergenic 50.0%
CCTTCATATGGGGGTAACAC+GGG + chr3_3:54529153-54529172 Msa0458640:CDS 50.0%
! GTTATGGTGGAGGTGATGCA+CGG + chr3_3:54529178-54529197 Msa0458640:CDS 50.0%
CCACTGTCATATCCAGCTTG+AGG - chr3_3:54529222-54529241 None:intergenic 50.0%
CCTCAAGCTGGATATGACAG+TGG + chr3_3:54529219-54529238 Msa0458640:CDS 50.0%
TATGACAGTGGTAATCGCGG+TGG + chr3_3:54529231-54529250 Msa0458640:CDS 50.0%
! AGTGGTAATCGCGGTGGATT+TGG + chr3_3:54529237-54529256 Msa0458640:CDS 50.0%
TTCTCATCGCACTGCTTCAC+CGG - chr3_3:54529294-54529313 None:intergenic 50.0%
TCATCAACAGTCACATCGGG+TGG - chr3_3:54529363-54529382 None:intergenic 50.0%
CAGAGGGATCTTCGTAAGCA+AGG - chr3_3:54530148-54530167 None:intergenic 50.0%
TGGCAGAGAAATCTGCACCA+AGG + chr3_3:54530322-54530341 Msa0458640:CDS 50.0%
GGCAGAGAAATCTGCACCAA+GGG + chr3_3:54530323-54530342 Msa0458640:CDS 50.0%
! TTATTTGCTGGAGGAGCCCT+TGG - chr3_3:54530342-54530361 None:intergenic 50.0%
GCTCCTCCAGCAAATAACCA+TGG + chr3_3:54530345-54530364 Msa0458640:CDS 50.0%
GATAGGCGCAGAGACAATTC+TGG + chr3_3:54530820-54530839 Msa0458640:CDS 50.0%
CAATTCTGGTCCTGATAGGC+GGG + chr3_3:54530834-54530853 Msa0458640:CDS 50.0%
CCATAATGATCCCGCCTATC+AGG - chr3_3:54530847-54530866 None:intergenic 50.0%
CCTGATAGGCGGGATCATTA+TGG + chr3_3:54530844-54530863 Msa0458640:CDS 50.0%
GATAGGCGGGATCATTATGG+CGG + chr3_3:54530847-54530866 Msa0458640:CDS 50.0%
ATAGGCGGGATCATTATGGC+GGG + chr3_3:54530848-54530867 Msa0458640:CDS 50.0%
GCTTGTACCAGATGCCACAT+GGG - chr3_3:54531248-54531267 None:intergenic 50.0%
CGATTGGAAAGAAGCAGCAG+AGG - chr3_3:54532263-54532282 None:intergenic 50.0%
TCTTCGTCGCATTTCTCCTC+AGG + chr3_3:54532326-54532345 Msa0458640:three_prime_UTR 50.0%
TGTCAAGTGTTCACAGCCTG+AGG - chr3_3:54532345-54532364 None:intergenic 50.0%
CTTTGGTAGGTCTTCCAGAC+TGG + chr3_3:54532525-54532544 Msa0458640:three_prime_UTR 50.0%
AGAGGACACATGAACCAGTC+TGG - chr3_3:54532542-54532561 None:intergenic 50.0%
! CCACCTTCCTATGGTGCTAG+CGG + chr3_3:54527865-54527884 Msa0458640:CDS 55.0%
GTAACCACCGCTAGCACCAT+AGG - chr3_3:54527875-54527894 None:intergenic 55.0%
!! GGCTATGGTGGTGGATATGC+TGG + chr3_3:54527913-54527932 Msa0458640:CDS 55.0%
GCTAAAGGAAGCGGAAACGG+TGG + chr3_3:54527961-54527980 Msa0458640:CDS 55.0%
AAAGGAAGCGGAAACGGTGG+TGG + chr3_3:54527964-54527983 Msa0458640:CDS 55.0%
!! AACGGTGGTGGAAGAGGCTA+TGG + chr3_3:54527976-54527995 Msa0458640:CDS 55.0%
GGCTATGGAGGTAACGATGG+TGG + chr3_3:54527991-54528010 Msa0458640:CDS 55.0%
!! AACGATGGTGGAGGTTACGG+TGG + chr3_3:54528003-54528022 Msa0458640:CDS 55.0%
! ATGGTGGAGGTTACGGTGGA+AGG + chr3_3:54528007-54528026 Msa0458640:CDS 55.0%
GGTGGAAGGAGTGGATATGG+TGG + chr3_3:54528021-54528040 Msa0458640:CDS 55.0%
! TATGGTGGAAACGATGGCGG+AGG + chr3_3:54528036-54528055 Msa0458640:CDS 55.0%
!! GGAAACGATGGCGGAGGATA+TGG + chr3_3:54528042-54528061 Msa0458640:CDS 55.0%
!! AACGATGGCGGAGGATATGG+TGG + chr3_3:54528045-54528064 Msa0458640:CDS 55.0%
! GGAGGATATGGTGGAAGAGG+CGG + chr3_3:54528054-54528073 Msa0458640:CDS 55.0%
GGCTTTCAAGGTGGAGATCG+TGG + chr3_3:54528234-54528253 Msa0458640:CDS 55.0%
! CATCTCTGCCACTTCCACCA+CGG - chr3_3:54528281-54528300 None:intergenic 55.0%
TCGGTACCACTGGTAGGACA+CGG - chr3_3:54528781-54528800 None:intergenic 55.0%
AATAGAGGAGGAAGTGGCGG+AGG + chr3_3:54528829-54528848 Msa0458640:CDS 55.0%
! GGCAGAGAAGATGGTGGCTA+TGG + chr3_3:54528985-54529004 Msa0458640:CDS 55.0%
! GCTGCTGCTCAGTCTTATGG+TGG + chr3_3:54529027-54529046 Msa0458640:CDS 55.0%
! GCTCAGTCTTATGGTGGTGC+TGG + chr3_3:54529033-54529052 Msa0458640:CDS 55.0%
! CAGTCTTATGGTGGTGCTGG+TGG + chr3_3:54529036-54529055 Msa0458640:CDS 55.0%
CCCGTGTTACCCCCATATGA+AGG - chr3_3:54529156-54529175 None:intergenic 55.0%
TCATATGGGGGTAACACGGG+TGG + chr3_3:54529156-54529175 Msa0458640:CDS 55.0%
GGTAACACGGGTGGTTATGG+TGG + chr3_3:54529165-54529184 Msa0458640:CDS 55.0%
AACACGGGTGGTTATGGTGG+AGG + chr3_3:54529168-54529187 Msa0458640:CDS 55.0%
! GGTAATCGCGGTGGATTTGG+TGG + chr3_3:54529240-54529259 Msa0458640:CDS 55.0%
GGCTTGTACCAGATGCCACA+TGG - chr3_3:54531249-54531268 None:intergenic 55.0%
ACTGGCTGTCAAGCAGCTCA+AGG + chr3_3:54531521-54531540 Msa0458640:three_prime_UTR 55.0%
! GGTGCTGTGCCACCTTCCTA+TGG + chr3_3:54527856-54527875 Msa0458640:CDS 60.0%
CCGCTAGCACCATAGGAAGG+TGG - chr3_3:54527868-54527887 None:intergenic 60.0%
CCACCGCTAGCACCATAGGA+AGG - chr3_3:54527871-54527890 None:intergenic 60.0%
! CCTTCCTATGGTGCTAGCGG+TGG + chr3_3:54527868-54527887 Msa0458640:CDS 60.0%
GCTGGGAATGAAAGTGGCGG+TGG + chr3_3:54527931-54527950 Msa0458640:CDS 60.0%
GGCGGTGGTTACGGAGCTAA+AGG + chr3_3:54527946-54527965 Msa0458640:CDS 60.0%
!! AGCGGAAACGGTGGTGGAAG+AGG + chr3_3:54527970-54527989 Msa0458640:CDS 60.0%
!! GGTGGTGGAAGAGGCTATGG+AGG + chr3_3:54527979-54527998 Msa0458640:CDS 60.0%
GGAGGTTACGGTGGAAGGAG+TGG + chr3_3:54528012-54528031 Msa0458640:CDS 60.0%
! GGCGGAGGATATGGTGGAAG+AGG + chr3_3:54528051-54528070 Msa0458640:CDS 60.0%
! GGATATGGTGGAAGAGGCGG+TGG + chr3_3:54528057-54528076 Msa0458640:CDS 60.0%
! TATGGTGGAAGAGGCGGTGG+TGG + chr3_3:54528060-54528079 Msa0458640:CDS 60.0%
!! GGTGGTGGTGGTGGAGGATA+TGG + chr3_3:54528090-54528109 Msa0458640:CDS 60.0%
GGTGGAGGATATGGAGCTCG+AGG + chr3_3:54528099-54528118 Msa0458640:CDS 60.0%
!! TAAACAGGTGGTGGCGGTGG+TGG + chr3_3:54528210-54528229 Msa0458640:intron 60.0%
!! GGTGGTGGTGGCTTTCAAGG+TGG + chr3_3:54528225-54528244 Msa0458640:CDS 60.0%
! CGTGGTGGAAGTGGCAGAGA+TGG + chr3_3:54528279-54528298 Msa0458640:CDS 60.0%
GGTACTCCGTGTCCTACCAG+TGG + chr3_3:54528772-54528791 Msa0458640:CDS 60.0%
AGTGGAGGGAGCAATAGGGG+TGG + chr3_3:54528943-54528962 Msa0458640:CDS 60.0%
TGAGCAGCAGCAACAGGAGG+AGG - chr3_3:54529018-54529037 None:intergenic 60.0%
GACTGAGCAGCAGCAACAGG+AGG - chr3_3:54529021-54529040 None:intergenic 60.0%
GCATTCCCACCATAGGTGGG+TGG - chr3_3:54529069-54529088 None:intergenic 60.0%
GGGGGTAACACGGGTGGTTA+TGG + chr3_3:54529162-54529181 Msa0458640:CDS 60.0%
TGATGCACGGAGTGGTGGCA+GGG + chr3_3:54529191-54529210 Msa0458640:CDS 60.0%
CCAGCAGAGTGAGCTGCAGA+GGG - chr3_3:54530164-54530183 None:intergenic 60.0%
ACCAGCAGAGTGAGCTGCAG+AGG - chr3_3:54530165-54530184 None:intergenic 60.0%
TCTGCAGCTCACTCTGCTGG+TGG + chr3_3:54530164-54530183 Msa0458640:CDS 60.0%
AGGGGCAATAGGGGTGGCTA+TGG + chr3_3:54530793-54530812 Msa0458640:intron 60.0%
GGCAATAGGGGTGGCTATGG+TGG + chr3_3:54530796-54530815 Msa0458640:CDS 60.0%
! GGGGTGGCTATGGTGGAGAT+AGG + chr3_3:54530803-54530822 Msa0458640:CDS 60.0%
ATGCCACATGGGACGAGCCA+GGG - chr3_3:54531237-54531256 None:intergenic 60.0%
! GGAGGGTACGGTCACGATGC+CGG + chr3_3:54527832-54527851 Msa0458640:CDS 65.0%
GGAAGGTGGCACAGCACCTC+CGG - chr3_3:54527854-54527873 None:intergenic 65.0%
GGTGCTAGCGGTGGTTACGG+AGG + chr3_3:54527877-54527896 Msa0458640:CDS 65.0%
GCTAGCGGTGGTTACGGAGG+CGG + chr3_3:54527880-54527899 Msa0458640:CDS 65.0%
! GGTGGAGGTGGTGGCTATGG+TGG + chr3_3:54527901-54527920 Msa0458640:CDS 65.0%
! GGAGGTGGTGGCTATGGTGG+TGG + chr3_3:54527904-54527923 Msa0458640:CDS 65.0%
! GGAAGAGGCGGTGGTGGTAG+AGG + chr3_3:54528066-54528085 Msa0458640:CDS 65.0%
! AGAGGCGGTGGTGGTAGAGG+AGG + chr3_3:54528069-54528088 Msa0458640:CDS 65.0%
! GGTGGTGGTAGAGGAGGTGG+TGG + chr3_3:54528075-54528094 Msa0458640:CDS 65.0%
! GGTGGTAGAGGAGGTGGTGG+TGG + chr3_3:54528078-54528097 Msa0458640:CDS 65.0%
!! GGTAGAGGAGGTGGTGGTGG+TGG + chr3_3:54528081-54528100 Msa0458640:CDS 65.0%
!! AGAGGAGGTGGTGGTGGTGG+AGG + chr3_3:54528084-54528103 Msa0458640:CDS 65.0%
!! GGCGGTGGTGGTGGCTTTCA+AGG + chr3_3:54528222-54528241 Msa0458640:CDS 65.0%
CCACGGTCGGTACCACTGGT+AGG - chr3_3:54528787-54528806 None:intergenic 65.0%
!! CCTACCAGTGGTACCGACCG+TGG + chr3_3:54528784-54528803 Msa0458640:CDS 65.0%
!! ACCAGTGGTACCGACCGTGG+TGG + chr3_3:54528787-54528806 Msa0458640:CDS 65.0%
!! AGTGGTACCGACCGTGGTGG+CGG + chr3_3:54528790-54528809 Msa0458640:CDS 65.0%
GGTGGAGGTGATGCACGGAG+TGG + chr3_3:54529183-54529202 Msa0458640:CDS 65.0%
GGAGGTGATGCACGGAGTGG+TGG + chr3_3:54529186-54529205 Msa0458640:CDS 65.0%
GTGATGCACGGAGTGGTGGC+AGG + chr3_3:54529190-54529209 Msa0458640:CDS 65.0%
TCCTGCTGAGCCAGCTCCAG+CGG + chr3_3:54529266-54529285 Msa0458640:CDS 65.0%
CCCTCTGCAGCTCACTCTGC+TGG + chr3_3:54530161-54530180 Msa0458640:CDS 65.0%
! CATCCCTGGCTCGTCCCATG+TGG + chr3_3:54531231-54531250 Msa0458640:three_prime_UTR 65.0%
GATGCCACATGGGACGAGCC+AGG - chr3_3:54531238-54531257 None:intergenic 65.0%
GGCTCGTCCCATGTGGCATC+TGG + chr3_3:54531238-54531257 Msa0458640:three_prime_UTR 65.0%
GGGTACGGTCACGATGCCGG+AGG + chr3_3:54527835-54527854 Msa0458640:CDS 70.0%
AGCGGTGGTTACGGAGGCGG+TGG + chr3_3:54527883-54527902 Msa0458640:CDS 70.0%
GGTGGTTACGGAGGCGGTGG+AGG + chr3_3:54527886-54527905 Msa0458640:CDS 70.0%
GGTTACGGAGGCGGTGGAGG+TGG + chr3_3:54527889-54527908 Msa0458640:CDS 70.0%
TACGGAGGCGGTGGAGGTGG+TGG + chr3_3:54527892-54527911 Msa0458640:CDS 70.0%
! GGCGGTGGAGGTGGTGGCTA+TGG + chr3_3:54527898-54527917 Msa0458640:CDS 70.0%
! GGCGGTGGTGGTAGAGGAGG+TGG + chr3_3:54528072-54528091 Msa0458640:CDS 70.0%
!! ACAGGTGGTGGCGGTGGTGG+TGG + chr3_3:54528213-54528232 Msa0458640:intron 70.0%
GGTGGAGATCGTGGTGGCCG+AGG + chr3_3:54528243-54528262 Msa0458640:CDS 70.0%
GGAGATCGTGGTGGCCGAGG+TGG + chr3_3:54528246-54528265 Msa0458640:CDS 70.0%
GATCGTGGTGGCCGAGGTGG+TGG + chr3_3:54528249-54528268 Msa0458640:CDS 70.0%
CACGGCCACCACCACCACCT+CGG - chr3_3:54528263-54528282 None:intergenic 70.0%
! GGTGGTGGCCGTGGTGGAAG+TGG + chr3_3:54528270-54528289 Msa0458640:CDS 70.0%
GCCACCACGGTCGGTACCAC+TGG - chr3_3:54528791-54528810 None:intergenic 70.0%
TGAGCCAGCTCCAGCGGCTC+CGG + chr3_3:54529272-54529291 Msa0458640:CDS 70.0%
TTCACCGGAGCCGCTGGAGC+TGG - chr3_3:54529279-54529298 None:intergenic 70.0%
CACTGCTTCACCGGAGCCGC+TGG - chr3_3:54529285-54529304 None:intergenic 70.0%
! CGTGGTGGCCGAGGTGGTGG+TGG + chr3_3:54528252-54528271 Msa0458640:CDS 75.0%
!! GGTGGCCGAGGTGGTGGTGG+TGG + chr3_3:54528255-54528274 Msa0458640:CDS 75.0%
!! CGAGGTGGTGGTGGTGGCCG+TGG + chr3_3:54528261-54528280 Msa0458640:CDS 75.0%
!! GGTGGTGGTGGTGGCCGTGG+TGG + chr3_3:54528264-54528283 Msa0458640:CDS 75.0%
!! GGTACCGACCGTGGTGGCGG+TGG + chr3_3:54528793-54528812 Msa0458640:CDS 75.0%
!! ACCGACCGTGGTGGCGGTGG+AGG + chr3_3:54528796-54528815 Msa0458640:CDS 75.0%
GCCTCCACCGCCACCACGGT+CGG - chr3_3:54528800-54528819 None:intergenic 75.0%
!! GACCGTGGTGGCGGTGGAGG+CGG + chr3_3:54528799-54528818 Msa0458640:CDS 75.0%
CACCGCCTCCACCGCCACCA+CGG - chr3_3:54528804-54528823 None:intergenic 75.0%
GGCAGGGCTGCGCCTCAAGC+TGG + chr3_3:54529207-54529226 Msa0458640:CDS 75.0%
! GCCGCTGGAGCTGGCTCAGC+AGG - chr3_3:54529270-54529289 None:intergenic 75.0%
!!! CGTGGTGGCGGTGGAGGCGG+TGG + chr3_3:54528802-54528821 Msa0458640:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 54527777 54532677 54527777 ID=Msa0458640;Name=Msa0458640
chr3_3 mRNA 54527777 54532677 54527777 ID=Msa0458640-mRNA-1;Parent=Msa0458640;Name=Msa0458640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=49|1|1|1|0.83|0.71|7|1672|473
chr3_3 exon 54527777 54528120 54527777 ID=Msa0458640-mRNA-1:exon:10770;Parent=Msa0458640-mRNA-1
chr3_3 exon 54528217 54528325 54528217 ID=Msa0458640-mRNA-1:exon:10771;Parent=Msa0458640-mRNA-1
chr3_3 exon 54528726 54529413 54528726 ID=Msa0458640-mRNA-1:exon:10772;Parent=Msa0458640-mRNA-1
chr3_3 exon 54530047 54530197 54530047 ID=Msa0458640-mRNA-1:exon:10773;Parent=Msa0458640-mRNA-1
chr3_3 exon 54530286 54530367 54530286 ID=Msa0458640-mRNA-1:exon:10774;Parent=Msa0458640-mRNA-1
chr3_3 exon 54530795 54530983 54530795 ID=Msa0458640-mRNA-1:exon:10775;Parent=Msa0458640-mRNA-1
chr3_3 exon 54531098 54532677 54531098 ID=Msa0458640-mRNA-1:exon:10776;Parent=Msa0458640-mRNA-1
chr3_3 five_prime_UTR 54527777 54527825 54527777 ID=Msa0458640-mRNA-1:five_prime_utr;Parent=Msa0458640-mRNA-1
chr3_3 CDS 54527826 54528120 54527826 ID=Msa0458640-mRNA-1:cds;Parent=Msa0458640-mRNA-1
chr3_3 CDS 54528217 54528325 54528217 ID=Msa0458640-mRNA-1:cds;Parent=Msa0458640-mRNA-1
chr3_3 CDS 54528726 54529413 54528726 ID=Msa0458640-mRNA-1:cds;Parent=Msa0458640-mRNA-1
chr3_3 CDS 54530047 54530197 54530047 ID=Msa0458640-mRNA-1:cds;Parent=Msa0458640-mRNA-1
chr3_3 CDS 54530286 54530367 54530286 ID=Msa0458640-mRNA-1:cds;Parent=Msa0458640-mRNA-1
chr3_3 CDS 54530795 54530891 54530795 ID=Msa0458640-mRNA-1:cds;Parent=Msa0458640-mRNA-1
chr3_3 three_prime_UTR 54530892 54530983 54530892 ID=Msa0458640-mRNA-1:three_prime_utr;Parent=Msa0458640-mRNA-1
chr3_3 three_prime_UTR 54531098 54532677 54531098 ID=Msa0458640-mRNA-1:three_prime_utr;Parent=Msa0458640-mRNA-1
Gene Sequence

>Msa0458640

ATGTCTGGAGGGTACGGTCACGATGCCGGAGGTGCTGTGCCACCTTCCTATGGTGCTAGCGGTGGTTACGGAGGCGGTGGAGGTGGTGGCTATGGTGGTGGATATGCTGGGAATGAAAGTGGCGGTGGTTACGGAGCTAAAGGAAGCGGAAACGGTGGTGGAAGAGGCTATGGAGGTAACGATGGTGGAGGTTACGGTGGAAGGAGTGGATATGGTGGAAACGATGGCGGAGGATATGGTGGAAGAGGCGGTGGTGGTAGAGGAGGTGGTGGTGGTGGAGGATATGGAGCTCGAGGTGGTGGCGGTGGTGGTGGCTTTCAAGGTGGAGATCGTGGTGGCCGAGGTGGTGGTGGTGGCCGTGGTGGAAGTGGCAGAGATGGAGATTGGCGTTGCCCTAACGAAAGTTGTGGGAACAATAACTTTGCTAGAAGGAATGAATGTAACAAATGTGGTACTCCGTGTCCTACCAGTGGTACCGACCGTGGTGGCGGTGGAGGCGGTGGATATAATAGAGGAGGAAGTGGCGGAGGATATGACAGTAACCGAGGAGGTAGGTCTGAGAACTATGGAGGTAGAACTAATGATTATAATGGTGGTAGGGGTAATAACAATGATGGAAGAAGTGGAGGGAGCAATAGGGGTGGTTCGTATGGCGGTAATCAAGGCAGAGAAGATGGTGGCTATGGTCAAGCACCTCCTCCTGTTGCTGCTGCTCAGTCTTATGGTGGTGCTGGTGGAAACTATCCACCCACCTATGGTGGGAATGCAAATTATGGAACAGATGCCGTTCCTCCACCTACAAGCTATACTGGTGGACCTAATTCATATCCTCCTTCATATGGGGGTAACACGGGTGGTTATGGTGGAGGTGATGCACGGAGTGGTGGCAGGGCTGCGCCTCAAGCTGGATATGACAGTGGTAATCGCGGTGGATTTGGTGGAGCTCCTGCTGAGCCAGCTCCAGCGGCTCCGGTGAAGCAGTGCGATGAGAATTGTGGAGATACATGTGACAACTCTAGAATCTATATCTCAAATTTACCACCCGATGTGACTGTTGATGAATTGCAGCAACTTTTTGGAGGCATTGGACAAGTTGGAAGAATAAAGCAGAAGAGGGGTTATAAAGATCAATGGCCTTACAACATTAAAATTTACACCGATGAAAACGGAAAAAACAAGGGTGATGCATGCCTTGCTTACGAAGATCCCTCTGCAGCTCACTCTGCTGGTGGTTTTTACAACGATTATGATTTGAGGGGTTACAAAATCAGTGTTGCAATGGCAGAGAAATCTGCACCAAGGGCTCCTCCAGCAAATAACCATGGGGGCAATAGGGGTGGCTATGGTGGAGATAGGCGCAGAGACAATTCTGGTCCTGATAGGCGGGATCATTATGGCGGGAATCGCTCACGCCCATACTAG
Protein sequence

>Msa0458640

MSGGYGHDAGGAVPPSYGASGGYGGGGGGGYGGGYAGNESGGGYGAKGSGNGGGRGYGGNDGGGYGGRSGYGGNDGGGYGGRGGGGRGGGGGGGYGARGGGGGGGFQGGDRGGRGGGGGRGGSGRDGDWRCPNESCGNNNFARRNECNKCGTPCPTSGTDRGGGGGGGYNRGGSGGGYDSNRGGRSENYGGRTNDYNGGRGNNNDGRSGGSNRGGSYGGNQGREDGGYGQAPPPVAAAQSYGGAGGNYPPTYGGNANYGTDAVPPPTSYTGGPNSYPPSYGGNTGGYGGGDARSGGRAAPQAGYDSGNRGGFGGAPAEPAPAAPVKQCDENCGDTCDNSRIYISNLPPDVTVDELQQLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDENGKNKGDACLAYEDPSAAHSAGGFYNDYDLRGYKISVAMAEKSAPRAPPANNHGGNRGGYGGDRRRDNSGPDRRDHYGGNRSRPY*