AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0805500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805500 MtrunA17_Chr5g0413401 100.000 71 0 0 1 71 1 71 6.25e-50 150
Msa0805500 MtrunA17_Chr4g0038621 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0805500 MtrunA17_Chr5g0413391 77.966 59 13 0 13 71 38 96 6.75e-31 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805500 AT1G61700.1 88.732 71 8 0 1 71 1 71 1.43e-44 137
Msa0805500 AT1G11475.1 89.855 69 7 0 1 69 1 69 1.27e-42 132

Find 39 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCTTAAGACTCCTTAAT+TGG 0.218662 5_3:+22128251 None:intergenic
AAGGGATAATCAAATCATTT+TGG 0.226726 5_3:-22127937 Msa0805500:three_prime_UTR
AGAGATGCACTGGATGCTTT+GGG 0.274653 5_3:-22128456 Msa0805500:CDS
TGCTTGCTAGAACAATTTAA+AGG 0.276326 5_3:+22128153 None:intergenic
GAAAAGCATGAAGCCAATTA+AGG 0.319569 5_3:-22128264 Msa0805500:exon
TAGAGATGCACTGGATGCTT+TGG 0.336585 5_3:-22128457 Msa0805500:CDS
CAAAATCGTTATTTAGCGTT+TGG 0.346017 5_3:+22131649 None:intergenic
GTTTCTTCTAATTAGGTCAT+TGG 0.370379 5_3:-22131412 Msa0805500:intron
ATTAGGTCATTGGAAACAAA+TGG 0.383611 5_3:-22131402 Msa0805500:intron
AGCACGCAACTGACACATTT+CGG 0.399196 5_3:+22128219 None:intergenic
CTAGAACAATTTAAAGGAAA+AGG 0.409796 5_3:+22128159 None:intergenic
GCATACGCCTGCAGCAATAT+CGG 0.413628 5_3:+22128427 None:intergenic
AATTCAGTAGCTTCTCGATA+AGG 0.428935 5_3:+22128388 None:intergenic
CCGCAGGTGAAACAACGAAC+TGG 0.441163 5_3:+22131577 None:intergenic
AAGCCAATTAAGGAGTCTTA+AGG 0.448688 5_3:-22128254 Msa0805500:exon
CAGAATTTATACTAATGCTT+AGG 0.464414 5_3:-22128040 Msa0805500:three_prime_UTR
GGTTGGTCCGATATTGCTGC+AGG 0.484942 5_3:-22128434 Msa0805500:CDS
CTTCAAGCTGATTACACTGA+AGG 0.490470 5_3:-22131361 Msa0805500:CDS
TGCACTGGATGCTTTGGGGT+TGG 0.493715 5_3:-22128451 Msa0805500:CDS
TTAGGTCATTGGAAACAAAT+GGG 0.513383 5_3:-22131401 Msa0805500:intron
CGCAGGTGAAACAACGAACT+GGG 0.523249 5_3:+22131578 None:intergenic
TTCAAGCTGATTACACTGAA+GGG 0.534819 5_3:-22131360 Msa0805500:intron
AGACAAAACTGTAGAATGAC+AGG 0.542212 5_3:-22128095 Msa0805500:three_prime_UTR
AAGATTAGAAACCTTTCCGC+AGG 0.548491 5_3:+22131561 None:intergenic
AATGTGTGTAGTGATAACTA+AGG 0.554664 5_3:-22127956 Msa0805500:three_prime_UTR
TAAAATTGACATGTGGCCAC+AGG 0.570748 5_3:+22128193 None:intergenic
TGTTAAAACATAACATGCAA+AGG 0.574632 5_3:+22128007 None:intergenic
TCGTTGTTTCACCTGCGGAA+AGG 0.581187 5_3:-22131572 Msa0805500:intron
ATGTGTGTAGTGATAACTAA+GGG 0.584476 5_3:-22127955 Msa0805500:three_prime_UTR
TGACTAACAATATAAACACT+TGG 0.597197 5_3:+22127887 None:intergenic
GAGATGCACTGGATGCTTTG+GGG 0.600948 5_3:-22128455 Msa0805500:CDS
AAAGGGTTTCTACTGTTGTG+CGG 0.603762 5_3:-22131626 Msa0805500:five_prime_UTR
CCAGTTCGTTGTTTCACCTG+CGG 0.606400 5_3:-22131577 Msa0805500:CDS
GCTTCTCGATAAGGTCAACA+TGG 0.614974 5_3:+22128397 None:intergenic
GTAAATAATCCCATAACCAG+AGG 0.642019 5_3:+22127914 None:intergenic
AATCAGCTTGAAGAAAGTCA+AGG 0.662224 5_3:+22131371 None:intergenic
TCAGTTGCGTGCTAGTCCTG+TGG 0.669432 5_3:-22128209 Msa0805500:three_prime_UTR
CTTCTCGATAAGGTCAACAT+GGG 0.682743 5_3:+22128398 None:intergenic
GTTGTGCGGCGTGAGCAGAG+AGG 0.743382 5_3:-22131612 Msa0805500:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTATTATTTAACATAA+TGG - chr5_3:22131061-22131080 Msa0805500:intron 10.0%
!!! TTTTAACGATTTTGAAATTT+AGG - chr5_3:22128086-22128105 Msa0805500:three_prime_UTR 15.0%
!!! TTTAACGATTTTGAAATTTA+GGG - chr5_3:22128087-22128106 Msa0805500:three_prime_UTR 15.0%
!!! GTTTCACAATTTTTTTTTTT+AGG - chr5_3:22128612-22128631 Msa0805500:intron 15.0%
!! GATAACAAAAAAAAAATTGT+CGG - chr5_3:22129125-22129144 Msa0805500:intron 15.0%
!! ATAACAAAAAAAAAATTGTC+GGG - chr5_3:22129126-22129145 Msa0805500:intron 15.0%
!! GATTTAATTATAGGAATTAT+GGG + chr5_3:22129822-22129841 None:intergenic 15.0%
!! TGATTTAATTATAGGAATTA+TGG + chr5_3:22129823-22129842 None:intergenic 15.0%
!! ACTGTTAATGATTTAATTAT+AGG + chr5_3:22129831-22129850 None:intergenic 15.0%
!! ACAAATTTAGTAAAAGATAA+TGG + chr5_3:22130297-22130316 None:intergenic 15.0%
!!! TATTACAAAATGCAATTTTA+AGG + chr5_3:22130409-22130428 None:intergenic 15.0%
!! TTGTTTATTAACTTATTGAA+AGG - chr5_3:22130463-22130482 Msa0805500:intron 15.0%
!! TTAAGTTAATAGTTGTAATT+TGG - chr5_3:22130554-22130573 Msa0805500:intron 15.0%
!!! ATCTTTTCTTTAGTTTAATA+TGG - chr5_3:22130627-22130646 Msa0805500:intron 15.0%
!! AAAAATATAAAATTGACATG+TGG + chr5_3:22131369-22131388 None:intergenic 15.0%
!!! ACATGTCAATTTTATATTTT+TGG - chr5_3:22131368-22131387 Msa0805500:CDS 15.0%
!!! CATGTCAATTTTATATTTTT+GGG - chr5_3:22131369-22131388 Msa0805500:CDS 15.0%
!! AAGAGAAAGCAATTAAATTA+GGG + chr5_3:22128224-22128243 None:intergenic 20.0%
!!! TCACAATTTTTTTTTTTAGG+TGG - chr5_3:22128615-22128634 Msa0805500:intron 20.0%
!! TACAAATATCATTTCTCTTA+AGG + chr5_3:22128780-22128799 None:intergenic 20.0%
!! TAAGTCATAAATATAATTGC+TGG - chr5_3:22129030-22129049 Msa0805500:intron 20.0%
!!! CAATTTTTTTTTTGTTATCG+TGG + chr5_3:22129124-22129143 None:intergenic 20.0%
!!! ACAGTTTTAAGATTAAACAA+TGG - chr5_3:22129200-22129219 Msa0805500:intron 20.0%
!!! TTCATTTTGATCTTAAACTA+TGG + chr5_3:22129275-22129294 None:intergenic 20.0%
!! TATGAATTTCCTGTATTTAA+AGG + chr5_3:22129735-22129754 None:intergenic 20.0%
!! GGAGATTACAAATTTATATT+GGG + chr5_3:22129801-22129820 None:intergenic 20.0%
!! AAAAAAGTTGTGAAACTAAA+GGG + chr5_3:22130267-22130286 None:intergenic 20.0%
!! AAAAAAAGTTGTGAAACTAA+AGG + chr5_3:22130268-22130287 None:intergenic 20.0%
!!! TAGTTTCACAACTTTTTTTT+TGG - chr5_3:22130269-22130288 Msa0805500:intron 20.0%
!!! TCTTTTACTAAATTTGTTTC+CGG - chr5_3:22130300-22130319 Msa0805500:intron 20.0%
!!! GCATTTTTAAGATTAAACAA+TGG - chr5_3:22130834-22130853 Msa0805500:intron 20.0%
!!! TGTAATGGTAACTTTTAAAA+AGG + chr5_3:22130893-22130912 None:intergenic 20.0%
!!! ATGACAGGTTTTTATAAAAA+CGG - chr5_3:22131472-22131491 Msa0805500:intron 20.0%
!!! GCTAAATAACGATTTTGAAA+GGG - chr5_3:22127909-22127928 Msa0805500:three_prime_UTR 25.0%
!!! TTGACTTGTTTCTTCTAATT+AGG - chr5_3:22128133-22128152 Msa0805500:three_prime_UTR 25.0%
! GAAGAGAAAGCAATTAAATT+AGG + chr5_3:22128225-22128244 None:intergenic 25.0%
!!! ATAGCTATTTTCACAGAAAT+AGG + chr5_3:22128247-22128266 None:intergenic 25.0%
!! TTTTGTCATATAAGTGCTTA+TGG - chr5_3:22128350-22128369 Msa0805500:intron 25.0%
! GTAGAAACAACTTATACATA+AGG + chr5_3:22128398-22128417 None:intergenic 25.0%
!! TTTTGTACTAAATATGTCTC+TGG - chr5_3:22128643-22128662 Msa0805500:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG + chr5_3:22128872-22128891 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + chr5_3:22128873-22128892 None:intergenic 25.0%
! ATTACACAAATGCAATTCTA+AGG + chr5_3:22128905-22128924 None:intergenic 25.0%
!!! TTTGTCTGTTTTGAAATAGT+TGG - chr5_3:22128968-22128987 Msa0805500:intron 25.0%
!!! TTTTTTTTTTGTTATCGTGG+TGG + chr5_3:22129121-22129140 None:intergenic 25.0%
!!! CTGTTCTAAAATCTAACAAT+TGG + chr5_3:22129436-22129455 None:intergenic 25.0%
!!! CAATTGTTAGATTTTAGAAC+AGG - chr5_3:22129434-22129453 Msa0805500:intron 25.0%
! TGTATTTAAAGGTTGTTAGA+AGG + chr5_3:22129724-22129743 None:intergenic 25.0%
! TTCTAACAACCTTTAAATAC+AGG - chr5_3:22129723-22129742 Msa0805500:intron 25.0%
! GGGAGATTACAAATTTATAT+TGG + chr5_3:22129802-22129821 None:intergenic 25.0%
! TCATTAACAGTCATAACTAT+AGG - chr5_3:22129840-22129859 Msa0805500:intron 25.0%
! GGAATTCTACAATAATAAAG+AGG - chr5_3:22129861-22129880 Msa0805500:intron 25.0%
! ATCTATTCAGATAAATGAAC+AGG + chr5_3:22129907-22129926 None:intergenic 25.0%
! GCTGAAATAATTATGATACT+TGG - chr5_3:22129939-22129958 Msa0805500:intron 25.0%
! ATTAATGTCTTAAGTGCTTA+TGG - chr5_3:22130006-22130025 Msa0805500:intron 25.0%
! ATAAGTCTATTCTGTTTCAA+TGG - chr5_3:22130341-22130360 Msa0805500:intron 25.0%
! ATTAACTTATTGAAAGGATG+AGG - chr5_3:22130469-22130488 Msa0805500:intron 25.0%
! TTAACTTATTGAAAGGATGA+GGG - chr5_3:22130470-22130489 Msa0805500:intron 25.0%
! ATCTCTTCAGAAGTTATTAT+TGG - chr5_3:22130514-22130533 Msa0805500:intron 25.0%
!! TTCATCTCTAAAGGAATATA+AGG - chr5_3:22130927-22130946 Msa0805500:intron 25.0%
! AATCATTGTGTATATACTAC+AGG - chr5_3:22130950-22130969 Msa0805500:intron 25.0%
! ATCATTGTGTATATACTACA+GGG - chr5_3:22130951-22130970 Msa0805500:intron 25.0%
! GTAATGATCATACATTCATT+TGG - chr5_3:22131254-22131273 Msa0805500:intron 25.0%
! CTAGAACAATTTAAAGGAAA+AGG + chr5_3:22131396-22131415 None:intergenic 25.0%
!! TGACAGGTTTTTATAAAAAC+GGG - chr5_3:22131473-22131492 Msa0805500:intron 25.0%
! CAGAATTTATACTAATGCTT+AGG - chr5_3:22131512-22131531 Msa0805500:intron 25.0%
! TGTTAAAACATAACATGCAA+AGG + chr5_3:22131548-22131567 None:intergenic 25.0%
!! AAGGGATAATCAAATCATTT+TGG - chr5_3:22131615-22131634 Msa0805500:five_prime_UTR 25.0%
CAAAATCGTTATTTAGCGTT+TGG + chr5_3:22127906-22127925 None:intergenic 30.0%
! CGCTAAATAACGATTTTGAA+AGG - chr5_3:22127908-22127927 Msa0805500:three_prime_UTR 30.0%
GTTTCTTCTAATTAGGTCAT+TGG - chr5_3:22128140-22128159 Msa0805500:three_prime_UTR 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr5_3:22128150-22128169 Msa0805500:three_prime_UTR 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr5_3:22128151-22128170 Msa0805500:three_prime_UTR 30.0%
GTTAGATACCTATATCTGTT+TGG - chr5_3:22128293-22128312 Msa0805500:intron 30.0%
CTGTATATCCAAACAGATAT+AGG + chr5_3:22128304-22128323 None:intergenic 30.0%
ATATAAGTGCTTATGGCATA+AGG - chr5_3:22128357-22128376 Msa0805500:intron 30.0%
AAGTTATCATGTAGAGTTTG+TGG - chr5_3:22128477-22128496 Msa0805500:intron 30.0%
AAGCACTCGTAAGATTATTT+GGG + chr5_3:22128547-22128566 None:intergenic 30.0%
TAAGCACTCGTAAGATTATT+TGG + chr5_3:22128548-22128567 None:intergenic 30.0%
TCATAGAACAACATTGAAAG+CGG + chr5_3:22128735-22128754 None:intergenic 30.0%
! TGATATTTGTACAGCCATTT+TGG - chr5_3:22128789-22128808 Msa0805500:intron 30.0%
!! GATATTTGTACAGCCATTTT+GGG - chr5_3:22128790-22128809 Msa0805500:intron 30.0%
ACTTCAATATTGCACAACAA+TGG + chr5_3:22128994-22129013 None:intergenic 30.0%
ATATTGAAGTTGTAACCCAT+TGG - chr5_3:22129004-22129023 Msa0805500:intron 30.0%
ATTTATGACTTACGACCAAT+GGG + chr5_3:22129022-22129041 None:intergenic 30.0%
TATTTATGACTTACGACCAA+TGG + chr5_3:22129023-22129042 None:intergenic 30.0%
TGGAGTTAATGATACTGAAA+AGG + chr5_3:22129101-22129120 None:intergenic 30.0%
!!! CTACACCAAGTTTTTTTCTA+CGG + chr5_3:22129152-22129171 None:intergenic 30.0%
!! CTGTTCTAAAATCCAACAAT+TGG - chr5_3:22129340-22129359 Msa0805500:intron 30.0%
TTGGGCTGTTAGAAATTTAT+AGG + chr5_3:22129783-22129802 None:intergenic 30.0%
!! ATTATTGGCTTATAACTCAG+CGG - chr5_3:22130529-22130548 Msa0805500:intron 30.0%
TGCTACATACATTATTTGAG+TGG - chr5_3:22130578-22130597 Msa0805500:intron 30.0%
! CAACTACGAAAAAACTTGTT+TGG - chr5_3:22130770-22130789 Msa0805500:intron 30.0%
AGTTGGGTATAACAATGTAA+TGG + chr5_3:22130908-22130927 None:intergenic 30.0%
! ATTCCTTTAGAGATGAAGTT+GGG + chr5_3:22130924-22130943 None:intergenic 30.0%
! TATTCCTTTAGAGATGAAGT+TGG + chr5_3:22130925-22130944 None:intergenic 30.0%
GTATATACTACAGGGATATT+AGG - chr5_3:22130959-22130978 Msa0805500:intron 30.0%
!! GCATTTTAATGTCATTCTCT+TGG - chr5_3:22131015-22131034 Msa0805500:intron 30.0%
!! GATTAATTTTAGAGATGCAC+TGG - chr5_3:22131086-22131105 Msa0805500:intron 30.0%
! TGTCAATTTTCTATCTCACT+GGG - chr5_3:22131228-22131247 Msa0805500:intron 30.0%
! TGCTTGCTAGAACAATTTAA+AGG + chr5_3:22131402-22131421 None:intergenic 30.0%
AATGTGTGTAGTGATAACTA+AGG - chr5_3:22131596-22131615 Msa0805500:exon 30.0%
ATGTGTGTAGTGATAACTAA+GGG - chr5_3:22131597-22131616 Msa0805500:exon 30.0%
AATCAGCTTGAAGAAAGTCA+AGG + chr5_3:22128184-22128203 None:intergenic 35.0%
TTCAAGCTGATTACACTGAA+GGG - chr5_3:22128192-22128211 Msa0805500:three_prime_UTR 35.0%
GCTAGTAGTTAATCTCTAAC+AGG - chr5_3:22128569-22128588 Msa0805500:intron 35.0%
AACTAACAACCTGTTTGGAT+TGG + chr5_3:22128595-22128614 None:intergenic 35.0%
TGTGAAACTAACAACCTGTT+TGG + chr5_3:22128600-22128619 None:intergenic 35.0%
AAGCTACTACGTAAGGAAAT+TGG + chr5_3:22128703-22128722 None:intergenic 35.0%
ACTAATCAAGCTACTACGTA+AGG + chr5_3:22128710-22128729 None:intergenic 35.0%
TTCTATGAACACATAACCAG+TGG - chr5_3:22128747-22128766 Msa0805500:intron 35.0%
GATAGAGAGTTATCCCAAAA+TGG + chr5_3:22128806-22128825 None:intergenic 35.0%
TTCTTCTTCCCTCTTCTTTA+GGG + chr5_3:22128843-22128862 None:intergenic 35.0%
TACTATATGCATTACTCGAG+TGG - chr5_3:22129054-22129073 Msa0805500:intron 35.0%
!! AAAACTTGGTGTAGACTACT+AGG - chr5_3:22129158-22129177 Msa0805500:intron 35.0%
!! CTGTTCTAAAATCCAGCAAT+TGG - chr5_3:22129556-22129575 Msa0805500:intron 35.0%
AGCTTGTATGGAACTATTGA+AGG - chr5_3:22129596-22129615 Msa0805500:intron 35.0%
CTGTTCTAATTTCCATCAAG+TGG + chr5_3:22129652-22129671 None:intergenic 35.0%
TATCGTATTTCCATATCTCC+AGG + chr5_3:22130139-22130158 None:intergenic 35.0%
! ACTAAAGGGCATGTTTGAAT+TGG + chr5_3:22130253-22130272 None:intergenic 35.0%
! AATTTGTTTCCGGCATACTT+TGG - chr5_3:22130310-22130329 Msa0805500:intron 35.0%
! TTTTCATAGCCAAAGTATGC+CGG + chr5_3:22130322-22130341 None:intergenic 35.0%
CTATTCTGTTTCAATGGTTC+TGG - chr5_3:22130347-22130366 Msa0805500:intron 35.0%
! GCATTTTGTAATAGATGTCG+CGG - chr5_3:22130416-22130435 Msa0805500:intron 35.0%
! CTTTTTAGACATGAGAACTG+GGG + chr5_3:22130735-22130754 None:intergenic 35.0%
! GCTTTTTAGACATGAGAACT+GGG + chr5_3:22130736-22130755 None:intergenic 35.0%
! AGCTTTTTAGACATGAGAAC+TGG + chr5_3:22130737-22130756 None:intergenic 35.0%
! CTACGAAAAAACTTGTTTGG+CGG - chr5_3:22130773-22130792 Msa0805500:intron 35.0%
TTGTTTGGCGGTATGAAATT+CGG - chr5_3:22130785-22130804 Msa0805500:intron 35.0%
ATACCCAACTTCATCTCTAA+AGG - chr5_3:22130918-22130937 Msa0805500:intron 35.0%
AATTCAGTAGCTTCTCGATA+AGG + chr5_3:22131167-22131186 None:intergenic 35.0%
! GTGTCAATTTTCTATCTCAC+TGG - chr5_3:22131227-22131246 Msa0805500:intron 35.0%
! GAAAAGCATGAAGCCAATTA+AGG - chr5_3:22131288-22131307 Msa0805500:intron 35.0%
AAGCCAATTAAGGAGTCTTA+AGG - chr5_3:22131298-22131317 Msa0805500:intron 35.0%
GTTCCTTAAGACTCCTTAAT+TGG + chr5_3:22131304-22131323 None:intergenic 35.0%
!!! AAGCAGTTTTAGCTGTGTTT+TGG - chr5_3:22131417-22131436 Msa0805500:intron 35.0%
AGACAAAACTGTAGAATGAC+AGG - chr5_3:22131457-22131476 Msa0805500:intron 35.0%
!! AATCAAATCATTTTGGCCTC+TGG - chr5_3:22131622-22131641 Msa0805500:five_prime_UTR 35.0%
GTAAATAATCCCATAACCAG+AGG + chr5_3:22131641-22131660 None:intergenic 35.0%
AAAGGGTTTCTACTGTTGTG+CGG - chr5_3:22127926-22127945 Msa0805500:three_prime_UTR 40.0%
AAGATTAGAAACCTTTCCGC+AGG + chr5_3:22127994-22128013 None:intergenic 40.0%
CTTCAAGCTGATTACACTGA+AGG - chr5_3:22128191-22128210 Msa0805500:three_prime_UTR 40.0%
TGTCTCTGGCATTCATTCTT+TGG - chr5_3:22128657-22128676 Msa0805500:intron 40.0%
CTCTTAAGGTATACATCCAC+TGG + chr5_3:22128766-22128785 None:intergenic 40.0%
! TGTTTCTGTCCCTAAAGAAG+AGG - chr5_3:22128831-22128850 Msa0805500:intron 40.0%
GTTTCTGTCCCTAAAGAAGA+GGG - chr5_3:22128832-22128851 Msa0805500:intron 40.0%
CTTCTTCTTCCCTCTTCTTT+AGG + chr5_3:22128844-22128863 None:intergenic 40.0%
CTAAAGAAGAGGGAAGAAGA+AGG - chr5_3:22128842-22128861 Msa0805500:intron 40.0%
AGAAGAAGGTTGTCCCAAAA+TGG - chr5_3:22128856-22128875 Msa0805500:intron 40.0%
GAAGCTGTGATACCAATTGT+TGG + chr5_3:22129355-22129374 None:intergenic 40.0%
AGCTTGTAAGGCATGATTGA+AGG - chr5_3:22129380-22129399 Msa0805500:intron 40.0%
!! CAGCTTCAGTTTAGCTTGTA+TGG - chr5_3:22129584-22129603 Msa0805500:intron 40.0%
ATCAAGTGGTATCAGAGCTT+CGG + chr5_3:22129638-22129657 None:intergenic 40.0%
TCTGTTTCCACAAACTAACC+TGG - chr5_3:22130118-22130137 Msa0805500:intron 40.0%
!! CATATCTCCAGGTTAGTTTG+TGG + chr5_3:22130128-22130147 None:intergenic 40.0%
CACAAACTAACCTGGAGATA+TGG - chr5_3:22130126-22130145 Msa0805500:intron 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr5_3:22130205-22130224 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr5_3:22130206-22130225 None:intergenic 40.0%
CTTCTCGATAAGGTCAACAT+GGG + chr5_3:22131157-22131176 None:intergenic 40.0%
CATTCATTTGGTTGCAGCTA+TGG - chr5_3:22131266-22131285 Msa0805500:intron 40.0%
TAAAATTGACATGTGGCCAC+AGG + chr5_3:22131362-22131381 None:intergenic 40.0%
!! ATCATTTTGGCCTCTGGTTA+TGG - chr5_3:22131628-22131647 Msa0805500:five_prime_UTR 40.0%
!! TCATTTTGGCCTCTGGTTAT+GGG - chr5_3:22131629-22131648 Msa0805500:five_prime_UTR 40.0%
TCTAACAGGCCAATCCAAAC+AGG - chr5_3:22128583-22128602 Msa0805500:intron 45.0%
TCGGGCCGTAGAAAAAAACT+TGG - chr5_3:22129144-22129163 Msa0805500:intron 45.0%
CAGCTTCAGTTGAGCTTGTA+AGG - chr5_3:22129368-22129387 Msa0805500:intron 45.0%
GAAGCTGTGATACCAATTGC+TGG + chr5_3:22129571-22129590 None:intergenic 45.0%
GAGCTTCGGTTAAGCTTGTA+AGG + chr5_3:22129624-22129643 None:intergenic 45.0%
! GAAGCTCTGATACCACTTGA+TGG - chr5_3:22129637-22129656 Msa0805500:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - chr5_3:22130212-22130231 Msa0805500:intron 45.0%
TTAGACATGAGAACTGGGGA+AGG + chr5_3:22130731-22130750 None:intergenic 45.0%
TGGCGGTATGAAATTCGGAT+CGG - chr5_3:22130790-22130809 Msa0805500:intron 45.0%
ATGAAATTCGGATCGGATGC+AGG - chr5_3:22130797-22130816 Msa0805500:intron 45.0%
TGAAATTCGGATCGGATGCA+GGG - chr5_3:22130798-22130817 Msa0805500:intron 45.0%
TAGAGATGCACTGGATGCTT+TGG - chr5_3:22131095-22131114 Msa0805500:intron 45.0%
AGAGATGCACTGGATGCTTT+GGG - chr5_3:22131096-22131115 Msa0805500:intron 45.0%
GCTTCTCGATAAGGTCAACA+TGG + chr5_3:22131158-22131177 None:intergenic 45.0%
AGCACGCAACTGACACATTT+CGG + chr5_3:22131336-22131355 None:intergenic 45.0%
CGCAGGTGAAACAACGAACT+GGG + chr5_3:22127977-22127996 None:intergenic 50.0%
! CCAGTTCGTTGTTTCACCTG+CGG - chr5_3:22127975-22127994 Msa0805500:three_prime_UTR 50.0%
! TCGTTGTTTCACCTGCGGAA+AGG - chr5_3:22127980-22127999 Msa0805500:three_prime_UTR 50.0%
GAGATGCACTGGATGCTTTG+GGG - chr5_3:22131097-22131116 Msa0805500:intron 50.0%
GCATACGCCTGCAGCAATAT+CGG + chr5_3:22131128-22131147 None:intergenic 50.0%
CCGCAGGTGAAACAACGAAC+TGG + chr5_3:22127978-22127997 None:intergenic 55.0%
!! TGCACTGGATGCTTTGGGGT+TGG - chr5_3:22131101-22131120 Msa0805500:intron 55.0%
! GGTTGGTCCGATATTGCTGC+AGG - chr5_3:22131118-22131137 Msa0805500:intron 55.0%
TCAGTTGCGTGCTAGTCCTG+TGG - chr5_3:22131343-22131362 Msa0805500:intron 55.0%
GAGAACTGGGGAAGGACGCT+AGG + chr5_3:22130723-22130742 None:intergenic 60.0%
GTTGTGCGGCGTGAGCAGAG+AGG - chr5_3:22127940-22127959 Msa0805500:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 22127900 22131674 22127900 ID=Msa0805500;Name=Msa0805500
chr5_3 mRNA 22127900 22131674 22127900 ID=Msa0805500-mRNA-1;Parent=Msa0805500;Name=Msa0805500-mRNA-1;_AED=0.18;_eAED=0.18;_QI=66|1|1|1|0|0|4|366|71
chr5_3 exon 22127900 22128291 22127900 ID=Msa0805500-mRNA-1:exon:8865;Parent=Msa0805500-mRNA-1
chr5_3 exon 22128382 22128476 22128382 ID=Msa0805500-mRNA-1:exon:8864;Parent=Msa0805500-mRNA-1
chr5_3 exon 22131361 22131419 22131361 ID=Msa0805500-mRNA-1:exon:8863;Parent=Msa0805500-mRNA-1
chr5_3 exon 22131573 22131674 22131573 ID=Msa0805500-mRNA-1:exon:8862;Parent=Msa0805500-mRNA-1
chr5_3 five_prime_UTR 22131609 22131674 22131609 ID=Msa0805500-mRNA-1:five_prime_utr;Parent=Msa0805500-mRNA-1
chr5_3 CDS 22131573 22131608 22131573 ID=Msa0805500-mRNA-1:cds;Parent=Msa0805500-mRNA-1
chr5_3 CDS 22131361 22131419 22131361 ID=Msa0805500-mRNA-1:cds;Parent=Msa0805500-mRNA-1
chr5_3 CDS 22128382 22128476 22128382 ID=Msa0805500-mRNA-1:cds;Parent=Msa0805500-mRNA-1
chr5_3 CDS 22128266 22128291 22128266 ID=Msa0805500-mRNA-1:cds;Parent=Msa0805500-mRNA-1
chr5_3 three_prime_UTR 22127900 22128265 22127900 ID=Msa0805500-mRNA-1:three_prime_utr;Parent=Msa0805500-mRNA-1
Gene Sequence

>Msa0805500

ATGATTATCCCAGTTCGTTGTTTCACCTGCGGAAAGGTCATTGGAAACAAATGGGATTCTTACCTTGACTTTCTTCAAGCTGATTACACTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTCCGATATTGCTGCAGGCGTATGCTTATGACCCATGTTGACCTTATCGAGAAGCTACTGAATTACAATACTATGGAAAAGCATGAAGCCAATTAA

Protein sequence

>Msa0805500

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKHEAN*