AlfalfaGEDB | Msa1432800

M. sativa cultivar zhongmu-4 / Msa1432800

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432800	KEH37197.1	95.652	69	3	0	1	69	1	69	1.84e-39	134

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432800	A0A072V5T5	95.652	69	3	0	1	69	1	69	8.79e-40	134

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0200370	Msa1432800	0.954263	4.384233e-112	-8.615850e-47
Msa0243470	Msa1432800	0.809144	2.187432e-50	-8.615850e-47
Msa0281270	Msa1432800	0.933460	1.814383e-95	-8.615850e-47
Msa0281940	Msa1432800	0.816821	4.539257e-52	-8.615850e-47
Msa0282170	Msa1432800	0.815154	1.069169e-51	-8.615850e-47
Msa0309550	Msa1432800	0.829876	4.026852e-55	-8.615850e-47
Msa0320440	Msa1432800	0.955128	6.175160e-113	-8.615850e-47
Msa0418430	Msa1432800	0.805005	1.644549e-49	-8.615850e-47
Msa0419620	Msa1432800	-0.841890	3.611158e-58	-8.615850e-47
Msa0511720	Msa1432800	-0.817514	3.169478e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432800	MtrunA17_Chr2g0295501	96.078	51	2	0	1	51	1	51	2.69e-31	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 13 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCATGCAAGATCGTGCTTC+TGG	0.277502	tig0027178:-24106	Msa1432800:CDS
ATCTTCCTTAGGTCTGATGA+AGG	0.601958	tig0027178:+24184	None:intergenic
CACCTCCTTCATCAGACCTA+AGG	0.563117	tig0027178:-24189	Msa1432800:CDS
CATGCAAGATCGTGCTTCTG+GGG	0.577242	tig0027178:-24104	Msa1432800:CDS
CTAAGGAAGATTGGCTTAGA+AGG	0.290742	tig0027178:-24172	Msa1432800:CDS
CTTCTAAGCCAATCTTCCTT+AGG	0.445559	tig0027178:+24173	None:intergenic
GCATGCAAGATCGTGCTTCT+GGG	0.397696	tig0027178:-24105	Msa1432800:CDS
GCTTCTGGGGTTAGCAAGGA+TGG	0.500998	tig0027178:-24091	Msa1432800:CDS
TAAGGAAGATTGGCTTAGAA+GGG	0.540665	tig0027178:-24171	Msa1432800:CDS
TCATCAGACCTAAGGAAGAT+TGG	0.412607	tig0027178:-24181	Msa1432800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGACCCACTTAAAATTTA+AGG	+	tig0027178:24091-24110	None:intergenic	30.0%
CAGTTTCATCTTTCATGTTA+TGG	-	tig0027178:24109-24128	Msa1432800:CDS	30.0%
ATATGTAGAAAAAAGCTCGA+AGG	-	tig0027178:24139-24158	Msa1432800:CDS	30.0%
ATCGAATGTAAGTTACCCAA+AGG	-	tig0027178:24016-24035	Msa1432800:intron	35.0%
TCGAATGTAAGTTACCCAAA+GGG	-	tig0027178:24017-24036	Msa1432800:intron	35.0%
ATCTTCCTTAGGTCTGATGA+AGG	+	tig0027178:23882-23901	None:intergenic	40.0%
TCATCAGACCTAAGGAAGAT+TGG	-	tig0027178:23882-23901	Msa1432800:CDS	40.0%
CTTCTAAGCCAATCTTCCTT+AGG	+	tig0027178:23893-23912	None:intergenic	40.0%
CGAATGTAAGTTACCCAAAG+GGG	-	tig0027178:24018-24037	Msa1432800:intron	40.0%
TTCCTTAGGTCTGATGAAGG+AGG	+	tig0027178:23879-23898	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027178	gene	23870	24215	23870	ID=Msa1432800;Name=Msa1432800
tig0027178	mRNA	23870	24215	23870	ID=Msa1432800-mRNA-1;Parent=Msa1432800;Name=Msa1432800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|73
tig0027178	exon	24063	24215	24063	ID=Msa1432800-mRNA-1:exon:8320;Parent=Msa1432800-mRNA-1
tig0027178	exon	23870	23938	23870	ID=Msa1432800-mRNA-1:exon:8319;Parent=Msa1432800-mRNA-1
tig0027178	CDS	24063	24215	24063	ID=Msa1432800-mRNA-1:cds;Parent=Msa1432800-mRNA-1
tig0027178	CDS	23870	23938	23870	ID=Msa1432800-mRNA-1:cds;Parent=Msa1432800-mRNA-1

Gene Sequence	>Msa1432800 ATGGCACCTCCTTCATCAGACCTAAGGAAGATTGGCTTAGAAGGGTTTGCTTTAATAGACAAGTTTTATGGTCCAACAAGAAGGGTCAGCATGCAAGATCGTGCTTCTGGGGTTAGCAAGGATGGAACTGTTTACTTTGTTGATAGATCGAATAAAAAAGCTCGAAGGCATGTGATCATATTTAAATCAAAGTCTTCTGTAGCTAAGAGAGAGTATATGTAG
Protein sequence	>Msa1432800 MAPPSSDLRKIGLEGFALIDKFYGPTRRVSMQDRASGVSKDGTVYFVDRSNKKARRHVIIFKSKSSVAKREYM*