AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450020 MtrunA17_Chr2g0296881 95.925 319 13 0 1 319 1 319 0.0 639
Msa1450020 MtrunA17_Chr2g0296871 81.875 320 52 2 1 319 1 315 0.0 546
Msa1450020 MtrunA17_Chr2g0296891 82.680 306 52 1 15 319 19 324 0.0 536
Msa1450020 MtrunA17_Chr4g0013751 27.758 281 162 9 22 280 521 782 7.18e-23 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450020 AT1G30910.1 58.278 302 123 2 17 318 19 317 2.37e-133 382
Msa1450020 AT5G44720.1 55.592 304 132 3 18 319 6 308 7.42e-126 362
Msa1450020 AT5G44720.2 57.080 226 96 1 18 243 6 230 2.08e-95 282
Msa1450020 AT1G16540.1 26.923 286 170 8 15 280 527 793 6.83e-25 105
Msa1450020 AT1G16540.3 25.649 308 185 6 15 280 527 832 1.14e-23 102

Find 94 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTCTCATGTGAATATT+TGG 0.099769 tig0032770:+16085 None:intergenic
ACCTACCACTGATTCCTTTA+TGG 0.111647 tig0032770:-19442 Msa1450020:CDS
CAGTGGTTCTCGGATTATTT+AGG 0.225492 tig0032770:-17421 Msa1450020:CDS
AAACAGGATCTCCCAATTTA+AGG 0.238470 tig0032770:+16290 None:intergenic
TTATTTATTTGATAGGATTT+AGG 0.244866 tig0032770:-19584 Msa1450020:intron
AGCAGAAGCAGCTGCTTAAA+AGG 0.253967 tig0032770:-16242 Msa1450020:exon
CAAATATTCACATGAGAATA+AGG 0.265942 tig0032770:-16084 Msa1450020:three_prime_UTR
CCTACCACTGATTCCTTTAT+GGG 0.268886 tig0032770:-19441 Msa1450020:intron
GAATGCATGTGTAAAATAAT+TGG 0.292005 tig0032770:+15987 None:intergenic
CGGATAGCCATCACTGAAAA+AGG 0.301036 tig0032770:+17119 None:intergenic
GGATGGAAAAGTCCTTAAAT+TGG 0.317212 tig0032770:-16302 Msa1450020:CDS
TGCGGTCCCTCGACATAATC+AGG 0.317256 tig0032770:+17147 None:intergenic
GGATGGAATCTTCTTCTATA+GGG 0.319739 tig0032770:-16324 Msa1450020:CDS
TCAAGTTCCACTCACTCCTT+CGG 0.333536 tig0032770:-19691 Msa1450020:CDS
TTACTACTTTCAGGAATCAT+TGG 0.337495 tig0032770:-17009 Msa1450020:intron
TGGATGGAATCTTCTTCTAT+AGG 0.343078 tig0032770:-16325 Msa1450020:CDS
GCTGTCTCTTGATTGATTGT+TGG 0.352501 tig0032770:+16542 None:intergenic
TTTAGGAAATCCTACTAAAC+TGG 0.354779 tig0032770:-17404 Msa1450020:CDS
ATTCCACGGCATGACTTAAC+AGG 0.374221 tig0032770:+19723 None:intergenic
AATATGTAAAATACCCATAA+AGG 0.377071 tig0032770:+19428 None:intergenic
AAATGTGATGTTTAAAGTTT+CGG 0.377620 tig0032770:-19911 Msa1450020:five_prime_UTR
CAAGTTCCACTCACTCCTTC+GGG 0.382382 tig0032770:-19690 Msa1450020:intron
ACACCTGAAGCTAAAGTTAC+AGG 0.385335 tig0032770:-19759 Msa1450020:CDS
ACCTCAACCAAAGCAAGCTT+TGG 0.385439 tig0032770:+19501 None:intergenic
ATGAAACTCTCATGAAATAT+AGG 0.390337 tig0032770:-16499 Msa1450020:CDS
TGGATGGTTGTGAATTCAAA+AGG 0.399082 tig0032770:-19549 Msa1450020:CDS
GGGAATGGACTGGCTCTGCT+TGG 0.402728 tig0032770:-17465 Msa1450020:CDS
AAACTGGTCCGCTTCAATAC+TGG 0.403839 tig0032770:-17388 Msa1450020:intron
AGTTGAACCAAAGCTTGCTT+TGG 0.418513 tig0032770:-19508 Msa1450020:CDS
CTGAAACGATTCATAAGTAT+TGG 0.421132 tig0032770:+16960 None:intergenic
CGAAGCATCGCAGTGGTTCT+CGG 0.425681 tig0032770:-17431 Msa1450020:CDS
CTCCATAGGTCTTCAGAATA+CGG 0.426148 tig0032770:+16815 None:intergenic
ATGCCTGTAACTTTAGCTTC+AGG 0.433437 tig0032770:+19756 None:intergenic
TGCAAATGCTATAAATAGCT+TGG 0.435196 tig0032770:+19881 None:intergenic
TATCATCTGGTCTTATGACT+TGG 0.439021 tig0032770:+16471 None:intergenic
TTGAAGCGGACCAGTTTAGT+AGG 0.456113 tig0032770:+17394 None:intergenic
GTCATGATATAGTGTGGAAC+TGG 0.465897 tig0032770:-16345 Msa1450020:CDS
GGAATGGACTGGCTCTGCTT+GGG 0.467842 tig0032770:-17464 Msa1450020:CDS
CTTGTGTTGCAGGTCTACTT+TGG 0.472504 tig0032770:-16367 Msa1450020:intron
TATTTCATGAGAGTTTCATT+TGG 0.483242 tig0032770:+16503 None:intergenic
GATGGAAAAGTCCTTAAATT+GGG 0.484488 tig0032770:-16301 Msa1450020:CDS
AATCAAGAGACAGCAAAAGT+TGG 0.492806 tig0032770:-16533 Msa1450020:CDS
TGGTGCAGTATCCTTGTTGA+AGG 0.496143 tig0032770:-16845 Msa1450020:intron
ACTTTGAGAGGTTCCATCCC+TGG 0.496805 tig0032770:+17532 None:intergenic
GTTACAGTGCTGAAAGCACC+AGG 0.502114 tig0032770:-17550 Msa1450020:intron
TAGGTGGGATAGACAATGGA+TGG 0.502735 tig0032770:-19565 Msa1450020:CDS
TCCGTACTTAATCGCATCTC+AGG 0.502861 tig0032770:-17100 Msa1450020:intron
AACCGTATTCTGAAGACCTA+TGG 0.503411 tig0032770:-16817 Msa1450020:CDS
ACTCTCATGAAATATAGGTC+TGG 0.506523 tig0032770:-16494 Msa1450020:CDS
ATGATATTACAGTGTGGGAA+TGG 0.509064 tig0032770:-17480 Msa1450020:CDS
GAAATTAAGTGATTATTACA+TGG 0.516605 tig0032770:-16172 Msa1450020:three_prime_UTR
CAAGCTGTGTTACCGTTGTA+AGG 0.522106 tig0032770:-16756 Msa1450020:intron
TTTATTTGATAGGATTTAGG+TGG 0.525152 tig0032770:-19581 Msa1450020:intron
CGAGAACCACTGCGATGCTT+CGG 0.528277 tig0032770:+17432 None:intergenic
CAGTGTTCATCAAAAGCCTC+AGG 0.529540 tig0032770:+19468 None:intergenic
ACCAAAGCTTGCTTTGGTTG+AGG 0.529657 tig0032770:-19502 Msa1450020:CDS
TTATCTTGAAATCTCTCCAT+AGG 0.544511 tig0032770:+16801 None:intergenic
ACCTGAGATGCGATTAAGTA+CGG 0.548607 tig0032770:+17099 None:intergenic
GAATCTTCTTCTATAGGGGA+TGG 0.549698 tig0032770:-16319 Msa1450020:CDS
TTATTTGATAGGATTTAGGT+GGG 0.556843 tig0032770:-19580 Msa1450020:intron
TAAACATCACATTTCACATG+AGG 0.557206 tig0032770:+19920 None:intergenic
ACTGGCTCTGCTTGGGACGA+AGG 0.560194 tig0032770:-17457 Msa1450020:CDS
TGAGGTTGAATTCCCACCTG+AGG 0.566023 tig0032770:-19484 Msa1450020:CDS
AGCAGATGATATTACAGTGT+GGG 0.567461 tig0032770:-17485 Msa1450020:CDS
GGATGGTTGTGAATTCAAAA+GGG 0.567997 tig0032770:-19548 Msa1450020:CDS
GATTTAGGTGGGATAGACAA+TGG 0.568641 tig0032770:-19569 Msa1450020:CDS
TTATCAAATATTAGTATCAG+TGG 0.570428 tig0032770:-16202 Msa1450020:three_prime_UTR
CTTACAACGGTAACACAGCT+TGG 0.581977 tig0032770:+16757 None:intergenic
AACATCACATTTCACATGAG+GGG 0.585000 tig0032770:+19922 None:intergenic
AAACATCACATTTCACATGA+GGG 0.586272 tig0032770:+19921 None:intergenic
GATGGAATCTTCTTCTATAG+GGG 0.591895 tig0032770:-16323 Msa1450020:CDS
TTGTTCAAACAAACTTTGAG+AGG 0.593649 tig0032770:+17520 None:intergenic
AGTGCTGAAAGCACCAGGGA+TGG 0.596777 tig0032770:-17545 Msa1450020:CDS
ATGATACCCGAAGGAGTGAG+TGG 0.598807 tig0032770:+19684 None:intergenic
TGTTCATCAAAAGCCTCAGG+TGG 0.613034 tig0032770:+19471 None:intergenic
CCCATAAAGGAATCAGTGGT+AGG 0.613095 tig0032770:+19441 None:intergenic
AATACCCATAAAGGAATCAG+TGG 0.615368 tig0032770:+19437 None:intergenic
TGATATAGTGTGGAACTGGA+TGG 0.619389 tig0032770:-16341 Msa1450020:CDS
GTAGACCCTGATTATGTCGA+GGG 0.620165 tig0032770:-17153 Msa1450020:CDS
AGATGTTACCAGTATTGAAG+CGG 0.621179 tig0032770:+17380 None:intergenic
GCGGTCCCTCGACATAATCA+GGG 0.622792 tig0032770:+17148 None:intergenic
GAAAATATAACACAAATGAA+AGG 0.624588 tig0032770:+16039 None:intergenic
TGCACTAAACGAGCTTCTAG+AGG 0.628214 tig0032770:-16985 Msa1450020:CDS
CTTGAGAAAGTGAAATTCCA+CGG 0.628894 tig0032770:+19709 None:intergenic
TATCCTGTTAAGTCATGCCG+TGG 0.637857 tig0032770:-19726 Msa1450020:CDS
ACTTTGGTCATGATATAGTG+TGG 0.638612 tig0032770:-16351 Msa1450020:CDS
AGTAGACCCTGATTATGTCG+AGG 0.644567 tig0032770:-17154 Msa1450020:CDS
ATTACAGTGTGGGAATGGAC+TGG 0.653012 tig0032770:-17475 Msa1450020:CDS
GTTCATCAAAAGCCTCAGGT+GGG 0.673084 tig0032770:+19472 None:intergenic
ACGGTTCACAACCTTCAACA+AGG 0.676913 tig0032770:+16834 None:intergenic
AAGGAGCCGAAGCATCGCAG+TGG 0.695660 tig0032770:-17438 Msa1450020:CDS
TAGCAGATGATATTACAGTG+TGG 0.696993 tig0032770:-17486 Msa1450020:CDS
ACTATAGTAGTAGTGTTACG+TGG 0.760881 tig0032770:-19945 None:intergenic
TTACAGTGCTGAAAGCACCA+GGG 0.762056 tig0032770:-17549 Msa1450020:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAATTTATTTATTTGAT+AGG - tig0032770:16226-16245 Msa1450020:three_prime_UTR 10.0%
!!! TAAGATGATATTTTTATATT+TGG - tig0032770:16840-16859 Msa1450020:CDS 10.0%
!! TTATTTATTTGATAGGATTT+AGG - tig0032770:16233-16252 Msa1450020:exon 15.0%
!!! TGTTTTACTTGAATAAATAA+TGG - tig0032770:16440-16459 Msa1450020:intron 15.0%
!!! TTTTCATAATTTTATCACAA+AGG + tig0032770:17962-17981 None:intergenic 15.0%
!!! TTAATTTTTTTGTTTTCTCA+TGG + tig0032770:18153-18172 None:intergenic 15.0%
!!! AAATGTGATGTTTAAAGTTT+CGG - tig0032770:15906-15925 Msa1450020:three_prime_UTR 20.0%
!!! TAAGTTTTATCTTTTGTTGT+TGG + tig0032770:15981-16000 None:intergenic 20.0%
!! AATATGTAAAATACCCATAA+AGG + tig0032770:16392-16411 None:intergenic 20.0%
!!! TCATTGACATTTTTTATCAA+AGG - tig0032770:17324-17343 Msa1450020:intron 20.0%
!!! TTTTGTTTGCTTATCATAAA+AGG - tig0032770:17689-17708 Msa1450020:intron 20.0%
!!! ATTTGTTTTACATCTTCTAT+TGG + tig0032770:17741-17760 None:intergenic 20.0%
!!! ATTATTGATGATGCTTATTA+TGG - tig0032770:19245-19264 Msa1450020:intron 20.0%
!! AGATGATAGAAACAAAAAAA+GGG - tig0032770:19361-19380 Msa1450020:intron 20.0%
!!! AACTTTTTGATAACATAAAC+AGG + tig0032770:19546-19565 None:intergenic 20.0%
!! TTATCAAATATTAGTATCAG+TGG - tig0032770:19615-19634 Msa1450020:intron 20.0%
!! GAAATTAAGTGATTATTACA+TGG - tig0032770:19645-19664 Msa1450020:intron 20.0%
!! GAAAATATAACACAAATGAA+AGG + tig0032770:19781-19800 None:intergenic 20.0%
! TTTATTTGATAGGATTTAGG+TGG - tig0032770:16236-16255 Msa1450020:exon 25.0%
! TTATTTGATAGGATTTAGGT+GGG - tig0032770:16237-16256 Msa1450020:exon 25.0%
! TTTGATGAAGTAAACCTTTA+TGG - tig0032770:16739-16758 Msa1450020:intron 25.0%
! TTGATGAAGTAAACCTTTAT+GGG - tig0032770:16740-16759 Msa1450020:intron 25.0%
! AATACTTAGCACAAATAACA+TGG + tig0032770:17109-17128 None:intergenic 25.0%
!! GAAGGCTGTAAATATATTTT+TGG + tig0032770:17560-17579 None:intergenic 25.0%
! TTATGATAAGCAAACAAAAC+AGG + tig0032770:17688-17707 None:intergenic 25.0%
!! AATTTTATCACAAAGGCTTA+TGG + tig0032770:17955-17974 None:intergenic 25.0%
!!! TAACATCTTTGAAACCTTAA+CGG - tig0032770:18452-18471 Msa1450020:intron 25.0%
! GCATGAAAACATTAATACTT+GGG + tig0032770:18884-18903 None:intergenic 25.0%
!! ATAAGCAGTTTTTCATTTCA+GGG - tig0032770:19035-19054 Msa1450020:intron 25.0%
! TATTTCATGAGAGTTTCATT+TGG + tig0032770:19317-19336 None:intergenic 25.0%
! ATGAAACTCTCATGAAATAT+AGG - tig0032770:19318-19337 Msa1450020:intron 25.0%
!!! CTTTTTTTGTTTCTATCATC+TGG + tig0032770:19362-19381 None:intergenic 25.0%
! CAGATGATAGAAACAAAAAA+AGG - tig0032770:19360-19379 Msa1450020:intron 25.0%
!! AAAATGTACCTTTTGTTCAT+TGG - tig0032770:19413-19432 Msa1450020:intron 25.0%
! CTTATTCTCATGTGAATATT+TGG + tig0032770:19735-19754 None:intergenic 25.0%
! CAAATATTCACATGAGAATA+AGG - tig0032770:19733-19752 Msa1450020:CDS 25.0%
! GAATGCATGTGTAAAATAAT+TGG + tig0032770:19833-19852 None:intergenic 25.0%
!! TATTTTACACATGCATTCAA+TGG - tig0032770:19835-19854 Msa1450020:five_prime_UTR 25.0%
AAACATCACATTTCACATGA+GGG + tig0032770:15899-15918 None:intergenic 30.0%
TAAACATCACATTTCACATG+AGG + tig0032770:15900-15919 None:intergenic 30.0%
TGCAAATGCTATAAATAGCT+TGG + tig0032770:15939-15958 None:intergenic 30.0%
AAAAAGAATATGATACCCGA+AGG + tig0032770:16145-16164 None:intergenic 30.0%
GTCTCACATTAAATGAGATA+AGG - tig0032770:16475-16494 Msa1450020:CDS 30.0%
ACATTAAATGAGATAAGGTC+CGG - tig0032770:16480-16499 Msa1450020:CDS 30.0%
GACCAGATTCTTAAAAGTTT+GGG + tig0032770:16556-16575 None:intergenic 30.0%
AGACCAGATTCTTAAAAGTT+TGG + tig0032770:16557-16576 None:intergenic 30.0%
AATCAAAACCATGACAACAT+GGG + tig0032770:16691-16710 None:intergenic 30.0%
AAATCAAAACCATGACAACA+TGG + tig0032770:16692-16711 None:intergenic 30.0%
TTAATCAACATGACCCATAA+AGG + tig0032770:16756-16775 None:intergenic 30.0%
AAAGGCTAACTTATGTCTTT+AGG + tig0032770:16880-16899 None:intergenic 30.0%
! AAGATCTGGAGTACATTTAA+AGG + tig0032770:16908-16927 None:intergenic 30.0%
AATTAATGCCTTTCAAGATC+TGG + tig0032770:16922-16941 None:intergenic 30.0%
GAAATTAGTGATGTTACATG+TGG - tig0032770:17000-17019 Msa1450020:intron 30.0%
TGGATAGAAAAAACATGGTT+GGG + tig0032770:17190-17209 None:intergenic 30.0%
CTTTGTGGATAGAAAAAACA+TGG + tig0032770:17195-17214 None:intergenic 30.0%
! TTTTCTATCCACAAAGATAG+AGG - tig0032770:17199-17218 Msa1450020:intron 30.0%
CAAAATTACCTCTATCTTTG+TGG + tig0032770:17210-17229 None:intergenic 30.0%
!! AGATAGAGGTAATTTTGAAG+TGG - tig0032770:17213-17232 Msa1450020:intron 30.0%
!!! GATAGAGGTAATTTTGAAGT+GGG - tig0032770:17214-17233 Msa1450020:intron 30.0%
TAAACACGACATTGATAAGT+TGG + tig0032770:17440-17459 None:intergenic 30.0%
AGTATATCCTTTCAAAGTAG+TGG - tig0032770:17649-17668 Msa1450020:intron 30.0%
!! TCATTTTGAAAATGACAAGG+AGG + tig0032770:17827-17846 None:intergenic 30.0%
!! CACTCATTTTGAAAATGACA+AGG + tig0032770:17830-17849 None:intergenic 30.0%
!! AATCACTTGCTTAATTTGTG+GGG + tig0032770:17876-17895 None:intergenic 30.0%
!! CAATCACTTGCTTAATTTGT+GGG + tig0032770:17877-17896 None:intergenic 30.0%
! TCAATCACTTGCTTAATTTG+TGG + tig0032770:17878-17897 None:intergenic 30.0%
GCTGAGAAGAAGTTAAAAAT+AGG + tig0032770:17925-17944 None:intergenic 30.0%
ACTTATCACTGAAGAGTTTA+TGG + tig0032770:18018-18037 None:intergenic 30.0%
GTTTGAATTGAATGTACATG+TGG + tig0032770:18073-18092 None:intergenic 30.0%
TTGTTCAAACAAACTTTGAG+AGG + tig0032770:18300-18319 None:intergenic 30.0%
TTTAGGAAATCCTACTAAAC+TGG - tig0032770:18413-18432 Msa1450020:intron 30.0%
!!! TGCTGTTTTATTATCCGTTA+AGG + tig0032770:18469-18488 None:intergenic 30.0%
ACATTATTTGAGAGTTATCG+TGG + tig0032770:18615-18634 None:intergenic 30.0%
TGATTCCTGAAAGTAGTAAA+TGG + tig0032770:18807-18826 None:intergenic 30.0%
TTACTACTTTCAGGAATCAT+TGG - tig0032770:18808-18827 Msa1450020:intron 30.0%
CTGAAACGATTCATAAGTAT+TGG + tig0032770:18860-18879 None:intergenic 30.0%
GGCATGAAAACATTAATACT+TGG + tig0032770:18885-18904 None:intergenic 30.0%
TTATCTTGAAATCTCTCCAT+AGG + tig0032770:19019-19038 None:intergenic 30.0%
! GATAAGCAGTTTTTCATTTC+AGG - tig0032770:19034-19053 Msa1450020:intron 30.0%
! TAGAAGTTTTCACCTTACAA+CGG + tig0032770:19076-19095 None:intergenic 30.0%
GATGGAAAAGTCCTTAAATT+GGG - tig0032770:19516-19535 Msa1450020:CDS 30.0%
AACATCACATTTCACATGAG+GGG + tig0032770:15898-15917 None:intergenic 35.0%
CTTGAGAAAGTGAAATTCCA+CGG + tig0032770:16111-16130 None:intergenic 35.0%
TGGATGGTTGTGAATTCAAA+AGG - tig0032770:16268-16287 Msa1450020:CDS 35.0%
GGATGGTTGTGAATTCAAAA+GGG - tig0032770:16269-16288 Msa1450020:CDS 35.0%
AATACCCATAAAGGAATCAG+TGG + tig0032770:16383-16402 None:intergenic 35.0%
! GTCCGGACATAAGTTTTTAA+GGG - tig0032770:16497-16516 Msa1450020:CDS 35.0%
!! TCCGGACATAAGTTTTTAAG+GGG - tig0032770:16498-16517 Msa1450020:CDS 35.0%
GATTCTTAAAAGTTTGGGTC+TGG + tig0032770:16551-16570 None:intergenic 35.0%
!! GACCCAAACTTTTAAGAATC+TGG - tig0032770:16551-16570 Msa1450020:intron 35.0%
!! TTTTAAGAATCTGGTCTGAG+TGG - tig0032770:16560-16579 Msa1450020:intron 35.0%
ATCAAAACCATGACAACATG+GGG + tig0032770:16690-16709 None:intergenic 35.0%
GTACATTTAAAGGTTGGGAA+AGG + tig0032770:16898-16917 None:intergenic 35.0%
CTGGAGTACATTTAAAGGTT+GGG + tig0032770:16903-16922 None:intergenic 35.0%
! TCTGGAGTACATTTAAAGGT+TGG + tig0032770:16904-16923 None:intergenic 35.0%
AATGTACTCCAGATCTTGAA+AGG - tig0032770:16911-16930 Msa1450020:intron 35.0%
CTAATCCATGTCATGTTTCA+TGG + tig0032770:17030-17049 None:intergenic 35.0%
CATGAAACATGACATGGATT+AGG - tig0032770:17028-17047 Msa1450020:intron 35.0%
ATAGAAAAAACATGGTTGGG+AGG + tig0032770:17187-17206 None:intergenic 35.0%
GTGGATAGAAAAAACATGGT+TGG + tig0032770:17191-17210 None:intergenic 35.0%
! ACAGCCAATGATGTTGATTA+GGG + tig0032770:17243-17262 None:intergenic 35.0%
TCGATAAAAGAGACTAACAC+AGG - tig0032770:17513-17532 Msa1450020:CDS 35.0%
! AGCCTTCTAGTTAATTCCAA+GGG - tig0032770:17573-17592 Msa1450020:intron 35.0%
AAAAGACAGATGTTACAGCT+GGG - tig0032770:17616-17635 Msa1450020:intron 35.0%
GATAGTTCCACTACTTTGAA+AGG + tig0032770:17659-17678 None:intergenic 35.0%
TAACTCAAACAACAGTCAGA+AGG + tig0032770:18116-18135 None:intergenic 35.0%
TAGCAGATGATATTACAGTG+TGG - tig0032770:18331-18350 Msa1450020:intron 35.0%
AGCAGATGATATTACAGTGT+GGG - tig0032770:18332-18351 Msa1450020:intron 35.0%
ATGATATTACAGTGTGGGAA+TGG - tig0032770:18337-18356 Msa1450020:intron 35.0%
! AGATGTTACCAGTATTGAAG+CGG + tig0032770:18440-18459 None:intergenic 35.0%
CAGCACTAACAATGTTAAGA+AGG - tig0032770:18484-18503 Msa1450020:intron 35.0%
CATATGCATGTAATGCACAA+TGG - tig0032770:18550-18569 Msa1450020:intron 35.0%
! ACTTGCCATTTACTACTTTC+AGG - tig0032770:18799-18818 Msa1450020:intron 35.0%
CTATGAAACACTAGACACAA+AGG + tig0032770:18906-18925 None:intergenic 35.0%
AAACCAACCAGTCAATTGAA+CGG + tig0032770:19171-19190 None:intergenic 35.0%
AATCAAGAGACAGCAAAAGT+TGG - tig0032770:19284-19303 Msa1450020:intron 35.0%
ACTCTCATGAAATATAGGTC+TGG - tig0032770:19323-19342 Msa1450020:intron 35.0%
!! TATCATCTGGTCTTATGACT+TGG + tig0032770:19349-19368 None:intergenic 35.0%
ACATGTCACCAATGAACAAA+AGG + tig0032770:19424-19443 None:intergenic 35.0%
ACTTTGGTCATGATATAGTG+TGG - tig0032770:19466-19485 Msa1450020:CDS 35.0%
TGGATGGAATCTTCTTCTAT+AGG - tig0032770:19492-19511 Msa1450020:CDS 35.0%
GGATGGAATCTTCTTCTATA+GGG - tig0032770:19493-19512 Msa1450020:CDS 35.0%
GATGGAATCTTCTTCTATAG+GGG - tig0032770:19494-19513 Msa1450020:CDS 35.0%
GGATGGAAAAGTCCTTAAAT+TGG - tig0032770:19515-19534 Msa1450020:CDS 35.0%
AAACAGGATCTCCCAATTTA+AGG + tig0032770:19530-19549 None:intergenic 35.0%
ACACCTGAAGCTAAAGTTAC+AGG - tig0032770:16058-16077 Msa1450020:three_prime_UTR 40.0%
! ATGCCTGTAACTTTAGCTTC+AGG + tig0032770:16064-16083 None:intergenic 40.0%
GATTTAGGTGGGATAGACAA+TGG - tig0032770:16248-16267 Msa1450020:CDS 40.0%
! AGTTGAACCAAAGCTTGCTT+TGG - tig0032770:16309-16328 Msa1450020:CDS 40.0%
! TGAGGCTTTTGATGAACACT+GGG - tig0032770:16351-16370 Msa1450020:CDS 40.0%
!! ACCTACCACTGATTCCTTTA+TGG - tig0032770:16375-16394 Msa1450020:intron 40.0%
!! CCTACCACTGATTCCTTTAT+GGG - tig0032770:16376-16395 Msa1450020:intron 40.0%
! GGTCCGGACATAAGTTTTTA+AGG - tig0032770:16496-16515 Msa1450020:CDS 40.0%
CCCCCTTAAAAACTTATGTC+CGG + tig0032770:16502-16521 None:intergenic 40.0%
!! CCGGACATAAGTTTTTAAGG+GGG - tig0032770:16499-16518 Msa1450020:CDS 40.0%
!! ATAAGTTTTTAAGGGGGAGC+TGG - tig0032770:16505-16524 Msa1450020:CDS 40.0%
! GTGGTCATGAGTTTGATTTC+TGG - tig0032770:16606-16625 Msa1450020:intron 40.0%
TCAAAACCATGACAACATGG+GGG + tig0032770:16689-16708 None:intergenic 40.0%
GAATGCCATGAAACATGACA+TGG - tig0032770:17022-17041 Msa1450020:intron 40.0%
!! ACATGACATGGATTAGGTGT+AGG - tig0032770:17034-17053 Msa1450020:intron 40.0%
!! CATGACATGGATTAGGTGTA+GGG - tig0032770:17035-17054 Msa1450020:intron 40.0%
! TGTCACCGACTAATCTTTGT+TGG - tig0032770:17138-17157 Msa1450020:CDS 40.0%
! GTCACCGACTAATCTTTGTT+GGG - tig0032770:17139-17158 Msa1450020:CDS 40.0%
GTCACCCAACAAAGATTAGT+CGG + tig0032770:17146-17165 None:intergenic 40.0%
GCATCCCTAATCAACATCAT+TGG - tig0032770:17236-17255 Msa1450020:intron 40.0%
! GACAGCCAATGATGTTGATT+AGG + tig0032770:17244-17263 None:intergenic 40.0%
ATTGGCTGTCATTACACACA+TGG - tig0032770:17254-17273 Msa1450020:intron 40.0%
! CGACATTGATAAGTTGGCAA+CGG + tig0032770:17434-17453 None:intergenic 40.0%
! CAGCCTTCTAGTTAATTCCA+AGG - tig0032770:17572-17591 Msa1450020:intron 40.0%
! GCCTTCTAGTTAATTCCAAG+GGG - tig0032770:17574-17593 Msa1450020:intron 40.0%
TCCCCTTGGAATTAACTAGA+AGG + tig0032770:17578-17597 None:intergenic 40.0%
!! CTAACATAGCTTTTTCCCCT+TGG + tig0032770:17592-17611 None:intergenic 40.0%
GAAAAGACAGATGTTACAGC+TGG - tig0032770:17615-17634 Msa1450020:intron 40.0%
!! CAGTCAGAAGGATAGTTTTG+AGG + tig0032770:18104-18123 None:intergenic 40.0%
TTTCCATGATCATGATCGCA+TGG - tig0032770:18209-18228 Msa1450020:intron 40.0%
AAACCATGCGATCATGATCA+TGG + tig0032770:18215-18234 None:intergenic 40.0%
CAGTGGTTCTCGGATTATTT+AGG - tig0032770:18396-18415 Msa1450020:intron 40.0%
!! CTAACTTCTGAAGCTGCAAT+TGG + tig0032770:18640-18659 None:intergenic 40.0%
ACCTGAGATGCGATTAAGTA+CGG + tig0032770:18721-18740 None:intergenic 40.0%
! AGATCACGCGATTGAGATTT+TGG - tig0032770:18942-18961 Msa1450020:intron 40.0%
!!! ATTGAGATTTTGGTGCCATG+TGG - tig0032770:18952-18971 Msa1450020:intron 40.0%
! AACCGTATTCTGAAGACCTA+TGG - tig0032770:19000-19019 Msa1450020:intron 40.0%
CTCCATAGGTCTTCAGAATA+CGG + tig0032770:19005-19024 None:intergenic 40.0%
AAAAAGCGATCTGAACCAAC+CGG - tig0032770:19124-19143 Msa1450020:intron 40.0%
!! TTGACTGGTTGGTTTGATCT+CGG - tig0032770:19176-19195 Msa1450020:intron 40.0%
GCTGTCTCTTGATTGATTGT+TGG + tig0032770:19278-19297 None:intergenic 40.0%
ATGTGAAATGCTTGTGTTGC+AGG - tig0032770:19440-19459 Msa1450020:intron 40.0%
GTCATGATATAGTGTGGAAC+TGG - tig0032770:19472-19491 Msa1450020:CDS 40.0%
TGATATAGTGTGGAACTGGA+TGG - tig0032770:19476-19495 Msa1450020:CDS 40.0%
GAATCTTCTTCTATAGGGGA+TGG - tig0032770:19498-19517 Msa1450020:CDS 40.0%
TATCCTGTTAAGTCATGCCG+TGG - tig0032770:16091-16110 Msa1450020:three_prime_UTR 45.0%
ATTCCACGGCATGACTTAAC+AGG + tig0032770:16097-16116 None:intergenic 45.0%
TCAAGTTCCACTCACTCCTT+CGG - tig0032770:16126-16145 Msa1450020:three_prime_UTR 45.0%
TAGGTGGGATAGACAATGGA+TGG - tig0032770:16252-16271 Msa1450020:CDS 45.0%
! ACCAAAGCTTGCTTTGGTTG+AGG - tig0032770:16315-16334 Msa1450020:CDS 45.0%
ACCTCAACCAAAGCAAGCTT+TGG + tig0032770:16319-16338 None:intergenic 45.0%
GTTCATCAAAAGCCTCAGGT+GGG + tig0032770:16348-16367 None:intergenic 45.0%
TGTTCATCAAAAGCCTCAGG+TGG + tig0032770:16349-16368 None:intergenic 45.0%
CAGTGTTCATCAAAAGCCTC+AGG + tig0032770:16352-16371 None:intergenic 45.0%
! CTGAGGCTTTTGATGAACAC+TGG - tig0032770:16350-16369 Msa1450020:CDS 45.0%
CCCATAAAGGAATCAGTGGT+AGG + tig0032770:16379-16398 None:intergenic 45.0%
!! ACATGGATTAGGTGTAGGGA+AGG - tig0032770:17039-17058 Msa1450020:intron 45.0%
!! CATGGATTAGGTGTAGGGAA+GGG - tig0032770:17040-17059 Msa1450020:intron 45.0%
!! ATGGATTAGGTGTAGGGAAG+GGG - tig0032770:17041-17060 Msa1450020:intron 45.0%
GTTGGGTGACAACCTTTAGA+AGG - tig0032770:17156-17175 Msa1450020:CDS 45.0%
ACCATCAATCCCTACGTCAA+TGG - tig0032770:17278-17297 Msa1450020:intron 45.0%
ACCATTGACGTAGGGATTGA+TGG + tig0032770:17282-17301 None:intergenic 45.0%
TATGCGTCACCATTGACGTA+GGG + tig0032770:17290-17309 None:intergenic 45.0%
ATATGCGTCACCATTGACGT+AGG + tig0032770:17291-17310 None:intergenic 45.0%
!! TTACAGTGCTGAAAGCACCA+GGG - tig0032770:18268-18287 Msa1450020:intron 45.0%
ATTACAGTGTGGGAATGGAC+TGG - tig0032770:18342-18361 Msa1450020:intron 45.0%
TTGAAGCGGACCAGTTTAGT+AGG + tig0032770:18426-18445 None:intergenic 45.0%
AAACTGGTCCGCTTCAATAC+TGG - tig0032770:18429-18448 Msa1450020:intron 45.0%
TGTCATGCACAACGTGTCTA+CGG + tig0032770:18585-18604 None:intergenic 45.0%
AGTAGACCCTGATTATGTCG+AGG - tig0032770:18663-18682 Msa1450020:intron 45.0%
GTAGACCCTGATTATGTCGA+GGG - tig0032770:18664-18683 Msa1450020:intron 45.0%
TCACTGAAAAAGGTCTGGTG+CGG + tig0032770:18691-18710 None:intergenic 45.0%
!!! CACCAGACCTTTTTCAGTGA+TGG - tig0032770:18691-18710 Msa1450020:intron 45.0%
AGCCATCACTGAAAAAGGTC+TGG + tig0032770:18696-18715 None:intergenic 45.0%
CGGATAGCCATCACTGAAAA+AGG + tig0032770:18701-18720 None:intergenic 45.0%
TCCGTACTTAATCGCATCTC+AGG - tig0032770:18717-18736 Msa1450020:intron 45.0%
! CTTTGTTTCCCAACTGCAAC+TGG + tig0032770:18748-18767 None:intergenic 45.0%
TGCACTAAACGAGCTTCTAG+AGG - tig0032770:18832-18851 Msa1450020:intron 45.0%
AACAAGGATACTGCACCACA+TGG + tig0032770:18970-18989 None:intergenic 45.0%
TGGTGCAGTATCCTTGTTGA+AGG - tig0032770:18972-18991 Msa1450020:intron 45.0%
ACGGTTCACAACCTTCAACA+AGG + tig0032770:18986-19005 None:intergenic 45.0%
CTTACAACGGTAACACAGCT+TGG + tig0032770:19063-19082 None:intergenic 45.0%
CAAGCTGTGTTACCGTTGTA+AGG - tig0032770:19061-19080 Msa1450020:intron 45.0%
! GTTCAATAGGTTGAACCGGT+TGG + tig0032770:19142-19161 None:intergenic 45.0%
! CCTGGTTCAATAGGTTGAAC+CGG + tig0032770:19146-19165 None:intergenic 45.0%
TGAACGGTTCCTGGTTCAAT+AGG + tig0032770:19155-19174 None:intergenic 45.0%
GAACCGTTCAATTGACTGGT+TGG - tig0032770:19165-19184 Msa1450020:intron 45.0%
CTTGTGTTGCAGGTCTACTT+TGG - tig0032770:19450-19469 Msa1450020:CDS 45.0%
! TTTTAAGCAGCTGCTTCTGC+TGG + tig0032770:19576-19595 None:intergenic 45.0%
AGCAGAAGCAGCTGCTTAAA+AGG - tig0032770:19575-19594 Msa1450020:intron 45.0%
CAAGTTCCACTCACTCCTTC+GGG - tig0032770:16127-16146 Msa1450020:three_prime_UTR 50.0%
ATGATACCCGAAGGAGTGAG+TGG + tig0032770:16136-16155 None:intergenic 50.0%
TGAGGTTGAATTCCCACCTG+AGG - tig0032770:16333-16352 Msa1450020:CDS 50.0%
!!! TAAGGGGGAGCTGGTTTTGT+TGG - tig0032770:16514-16533 Msa1450020:CDS 50.0%
CTGGTCTGAGTGGTAAGCAA+CGG - tig0032770:16570-16589 Msa1450020:intron 50.0%
TGGTCTGAGTGGTAAGCAAC+GGG - tig0032770:16571-16590 Msa1450020:intron 50.0%
CAACGGGTCTCTTAAGCATG+TGG - tig0032770:16587-16606 Msa1450020:intron 50.0%
CAAGTACCCCCATGTTGTCA+TGG - tig0032770:16680-16699 Msa1450020:intron 50.0%
ATTAGGTGTAGGGAAGGGGT+GGG - tig0032770:17045-17064 Msa1450020:intron 50.0%
TGGGAGACATGAGAAGGAGA+TGG - tig0032770:17064-17083 Msa1450020:intron 50.0%
GAGACATGAGAAGGAGATGG+AGG - tig0032770:17067-17086 Msa1450020:intron 50.0%
TGGGAGGAGAGACCTTCTAA+AGG + tig0032770:17171-17190 None:intergenic 50.0%
AGACAGATGTTACAGCTGGG+TGG - tig0032770:17619-17638 Msa1450020:intron 50.0%
!! GTTACAGTGCTGAAAGCACC+AGG - tig0032770:18267-18286 Msa1450020:intron 50.0%
! ACTTTGAGAGGTTCCATCCC+TGG + tig0032770:18288-18307 None:intergenic 50.0%
CACAACGTGTCTACGGTTCA+TGG + tig0032770:18578-18597 None:intergenic 50.0%
AGGTCAGTCCAGTTGCAGTT+GGG - tig0032770:18737-18756 Msa1450020:intron 50.0%
CCGGTTCAACCTATTGAACC+AGG - tig0032770:19143-19162 Msa1450020:intron 50.0%
CCAGTCAATTGAACGGTTCC+TGG + tig0032770:19164-19183 None:intergenic 50.0%
CCAGGAACCGTTCAATTGAC+TGG - tig0032770:19161-19180 Msa1450020:intron 50.0%
GATTAGGTGTAGGGAAGGGG+TGG - tig0032770:17044-17063 Msa1450020:intron 55.0%
AAGGGGTGGGAGACATGAGA+AGG - tig0032770:17058-17077 Msa1450020:intron 55.0%
CAGATGTTACAGCTGGGTGG+AGG - tig0032770:17622-17641 Msa1450020:intron 55.0%
! GTGGGGCTGTTGATGAGTAG+TGG + tig0032770:17859-17878 None:intergenic 55.0%
!! AGTGCTGAAAGCACCAGGGA+TGG - tig0032770:18272-18291 Msa1450020:intron 55.0%
!! GGAATGGACTGGCTCTGCTT+GGG - tig0032770:18353-18372 Msa1450020:intron 55.0%
CGAGAACCACTGCGATGCTT+CGG + tig0032770:18388-18407 None:intergenic 55.0%
!! CGAAGCATCGCAGTGGTTCT+CGG - tig0032770:18386-18405 Msa1450020:intron 55.0%
GCGGTCCCTCGACATAATCA+GGG + tig0032770:18672-18691 None:intergenic 55.0%
TGCGGTCCCTCGACATAATC+AGG + tig0032770:18673-18692 None:intergenic 55.0%
CAGGTCAGTCCAGTTGCAGT+TGG - tig0032770:18736-18755 Msa1450020:intron 55.0%
!! GGGAATGGACTGGCTCTGCT+TGG - tig0032770:18352-18371 Msa1450020:intron 60.0%
!! ACTGGCTCTGCTTGGGACGA+AGG - tig0032770:18360-18379 Msa1450020:intron 60.0%
!! AAGGAGCCGAAGCATCGCAG+TGG - tig0032770:18379-18398 Msa1450020:intron 60.0%
Chromosome Type Strat End Strand Name
tig0032770 gene 15884 19955 15884 ID=Msa1450020;Name=Msa1450020
tig0032770 mRNA 15884 19955 15884 ID=Msa1450020-mRNA-1;Parent=Msa1450020;Name=Msa1450020-mRNA-1;_AED=0.32;_eAED=0.32;_QI=135|1|1|1|1|1|8|362|319
tig0032770 exon 15884 16377 15884 ID=Msa1450020-mRNA-1:exon:17237;Parent=Msa1450020-mRNA-1
tig0032770 exon 16457 16567 16457 ID=Msa1450020-mRNA-1:exon:17236;Parent=Msa1450020-mRNA-1
tig0032770 exon 16757 16859 16757 ID=Msa1450020-mRNA-1:exon:17235;Parent=Msa1450020-mRNA-1
tig0032770 exon 16954 17018 16954 ID=Msa1450020-mRNA-1:exon:17234;Parent=Msa1450020-mRNA-1
tig0032770 exon 17101 17192 17101 ID=Msa1450020-mRNA-1:exon:17233;Parent=Msa1450020-mRNA-1
tig0032770 exon 17389 17565 17389 ID=Msa1450020-mRNA-1:exon:17232;Parent=Msa1450020-mRNA-1
tig0032770 exon 19442 19591 19442 ID=Msa1450020-mRNA-1:exon:17231;Parent=Msa1450020-mRNA-1
tig0032770 exon 19691 19955 19691 ID=Msa1450020-mRNA-1:exon:17230;Parent=Msa1450020-mRNA-1
tig0032770 five_prime_UTR 19821 19955 19821 ID=Msa1450020-mRNA-1:five_prime_utr;Parent=Msa1450020-mRNA-1
tig0032770 CDS 19691 19820 19691 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 19442 19591 19442 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 17389 17565 17389 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 17101 17192 17101 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 16954 17018 16954 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 16757 16859 16757 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 16457 16567 16457 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 CDS 16246 16377 16246 ID=Msa1450020-mRNA-1:cds;Parent=Msa1450020-mRNA-1
tig0032770 three_prime_UTR 15884 16245 15884 ID=Msa1450020-mRNA-1:three_prime_utr;Parent=Msa1450020-mRNA-1
Gene Sequence

>Msa1450020

ATGAGTGTTGCAGCTTCAAAATCTGTAACAGAATCAGCAACACCTGAAGCTAAAGTTACAGGCATTTTCGTATATCCTGTTAAGTCATGCCGTGGAATTTCACTTTCTCAAGTTCCACTCACTCCTTCGGGATTTAGGTGGGATAGACAATGGATGGTTGTGAATTCAAAAGGGAGAGCATGTACTCAAAGAGTTGAACCAAAGCTTGCTTTGGTTGAGGTTGAATTCCCACCTGAGGCTTTTGATGAACACTGGGAACCTACCACTGATTCCTTTATGGTGCTGAAAGCACCAGGGATGGAACCTCTCAAAGTTTGTTTGAACAAACAGTATGAAGTAGCAGATGATATTACAGTGTGGGAATGGACTGGCTCTGCTTGGGACGAAGGAGCCGAAGCATCGCAGTGGTTCTCGGATTATTTAGGAAATCCTACTAAACTGGTCCGCTTCAATACTGCTTCAGAAGTTAGAAAAGTAGACCCTGATTATGTCGAGGGACCGCACCAGACCTTTTTCAGTGATGGCTATCCGTACTTAATCGCATCTCAGGAATCATTGGATGCACTAAACGAGCTTCTAGAGGAACCAATACTTATGAATCGTTTCAGACCCAATATCCTTGTTGAAGGTTGTGAACCGTATTCTGAAGACCTATGGAGAGATTTCAAGATAAGCAGTTTTTCATTTCAGGGTGCCAAGCTGTGTTACCGTTGTAAGATTCCAACAATCAATCAAGAGACAGCAAAAGTTGGAGCTGAACCAAATGAAACTCTCATGAAATATAGGTCTGGCCAAGTCATAAGACCAGATGATAGAAACAAAAAAAGGGTCTACTTTGGTCATGATATAGTGTGGAACTGGATGGAATCTTCTTCTATAGGGGATGGAAAAGTCCTTAAATTGGGAGATCCTGTTTATGTTATCAAAAAGTTCTCTTCTCCAGCAGAAGCAGCTGCTTAA

Protein sequence

>Msa1450020

MSVAASKSVTESATPEAKVTGIFVYPVKSCRGISLSQVPLTPSGFRWDRQWMVVNSKGRACTQRVEPKLALVEVEFPPEAFDEHWEPTTDSFMVLKAPGMEPLKVCLNKQYEVADDITVWEWTGSAWDEGAEASQWFSDYLGNPTKLVRFNTASEVRKVDPDYVEGPHQTFFSDGYPYLIASQESLDALNELLEEPILMNRFRPNILVEGCEPYSEDLWRDFKISSFSFQGAKLCYRCKIPTINQETAKVGAEPNETLMKYRSGQVIRPDDRNKKRVYFGHDIVWNWMESSSIGDGKVLKLGDPVYVIKKFSSPAEAAA*