Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200370 | KEH37197.1 | 92.453 | 53 | 4 | 0 | 1 | 53 | 1 | 53 | 1.91e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200370 | A0A072V5T5 | 92.453 | 53 | 4 | 0 | 1 | 53 | 1 | 53 | 9.11e-27 | 104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0200370 | 0.803739 | 3.019713e-49 | -8.615850e-47 |
| Msa0060600 | Msa0200370 | 0.813637 | 2.314074e-51 | -8.615850e-47 |
| Msa0105340 | Msa0200370 | 0.802852 | 4.607474e-49 | -8.615850e-47 |
| Msa0151690 | Msa0200370 | 0.814872 | 1.234709e-51 | -8.615850e-47 |
| Msa0182930 | Msa0200370 | 0.801074 | 1.068947e-48 | -8.615850e-47 |
| Msa0193760 | Msa0200370 | 0.809879 | 1.521043e-50 | -8.615850e-47 |
| Msa0198440 | Msa0200370 | 0.814476 | 1.511000e-51 | -8.615850e-47 |
| Msa0200370 | Msa0243470 | 0.817347 | 3.456690e-52 | -8.615850e-47 |
| Msa0200370 | Msa0265210 | 0.802541 | 5.341595e-49 | -8.615850e-47 |
| Msa0200370 | Msa0278670 | 0.816507 | 5.337725e-52 | -8.615850e-47 |
| Msa0200370 | Msa0281270 | 0.963782 | 1.652286e-122 | -8.615850e-47 |
| Msa0200370 | Msa0281940 | 0.834685 | 2.597376e-56 | -8.615850e-47 |
| Msa0200370 | Msa0282170 | 0.838962 | 2.105268e-57 | -8.615850e-47 |
| Msa0200370 | Msa0284870 | 0.800132 | 1.663814e-48 | -8.615850e-47 |
| Msa0200370 | Msa0309550 | 0.846430 | 2.183402e-59 | -8.615850e-47 |
| Msa0200370 | Msa0318070 | 0.814809 | 1.274836e-51 | -8.615850e-47 |
| Msa0200370 | Msa0320440 | 0.979323 | 1.021822e-147 | -8.615850e-47 |
| Msa0200370 | Msa0363460 | 0.819870 | 9.255718e-53 | -8.615850e-47 |
| Msa0200370 | Msa0371540 | 0.806565 | 7.733055e-50 | -8.615850e-47 |
| Msa0200370 | Msa0411000 | 0.823209 | 1.566356e-53 | -8.615850e-47 |
| Msa0200370 | Msa0418430 | 0.816149 | 6.417486e-52 | -8.615850e-47 |
| Msa0200370 | Msa0419620 | -0.866815 | 2.163720e-65 | -8.615850e-47 |
| Msa0200370 | Msa0431520 | 0.804465 | 2.131899e-49 | -8.615850e-47 |
| Msa0200370 | Msa0431830 | 0.830478 | 2.871727e-55 | -8.615850e-47 |
| Msa0200370 | Msa0455230 | 0.820868 | 5.463962e-53 | -8.615850e-47 |
| Msa0200370 | Msa0466060 | 0.817392 | 3.377133e-52 | -8.615850e-47 |
| Msa0200370 | Msa0511720 | -0.846473 | 2.124794e-59 | -8.615850e-47 |
| Msa0200370 | Msa0517340 | 0.809288 | 2.037377e-50 | -8.615850e-47 |
| Msa0200370 | Msa0530950 | 0.824559 | 7.560715e-54 | -8.615850e-47 |
| Msa0200370 | Msa0576600 | 0.823880 | 1.091475e-53 | -8.615850e-47 |
| Msa0200370 | Msa0579340 | 0.806447 | 8.190377e-50 | -8.615850e-47 |
| Msa0200370 | Msa0590660 | 0.812156 | 4.884858e-51 | -8.615850e-47 |
| Msa0200370 | Msa0617830 | 0.808476 | 3.039804e-50 | -8.615850e-47 |
| Msa0200370 | Msa0620750 | 0.808529 | 2.961534e-50 | -8.615850e-47 |
| Msa0200370 | Msa0626230 | 0.819955 | 8.847641e-53 | -8.615850e-47 |
| Msa0200370 | Msa0628100 | 0.829659 | 4.547939e-55 | -8.615850e-47 |
| Msa0200370 | Msa0656270 | 0.812899 | 3.360051e-51 | -8.615850e-47 |
| Msa0200370 | Msa0665910 | -0.801290 | 9.656773e-49 | -8.615850e-47 |
| Msa0200370 | Msa0682730 | -0.802797 | 4.730325e-49 | -8.615850e-47 |
| Msa0200370 | Msa0694250 | 0.802411 | 5.682954e-49 | -8.615850e-47 |
| Msa0200370 | Msa0700070 | 0.816595 | 5.100058e-52 | -8.615850e-47 |
| Msa0200370 | Msa0714340 | 0.806394 | 8.403900e-50 | -8.615850e-47 |
| Msa0200370 | Msa0714600 | 0.815761 | 7.835165e-52 | -8.615850e-47 |
| Msa0200370 | Msa0722930 | 0.837393 | 5.337119e-57 | -8.615850e-47 |
| Msa0200370 | Msa0723140 | 0.827698 | 1.355113e-54 | -8.615850e-47 |
| Msa0200370 | Msa0724050 | 0.829568 | 4.787008e-55 | -8.615850e-47 |
| Msa0200370 | Msa0731710 | 0.804814 | 1.802795e-49 | -8.615850e-47 |
| Msa0200370 | Msa0743640 | 0.807122 | 5.898499e-50 | -8.615850e-47 |
| Msa0200370 | Msa0756310 | 0.804429 | 2.169354e-49 | -8.615850e-47 |
| Msa0200370 | Msa0763880 | 0.828010 | 1.140212e-54 | -8.615850e-47 |
| Msa0200370 | Msa0763910 | 0.806293 | 8.826972e-50 | -8.615850e-47 |
| Msa0200370 | Msa0807050 | 0.831190 | 1.920649e-55 | -8.615850e-47 |
| Msa0200370 | Msa0828570 | 0.800925 | 1.146304e-48 | -8.615850e-47 |
| Msa0200370 | Msa0832990 | 0.832765 | 7.843754e-56 | -8.615850e-47 |
| Msa0200370 | Msa0835730 | 0.804320 | 2.286295e-49 | -8.615850e-47 |
| Msa0200370 | Msa0863760 | 0.810772 | 9.760726e-51 | -8.615850e-47 |
| Msa0200370 | Msa0887070 | 0.826146 | 3.183910e-54 | -8.615850e-47 |
| Msa0200370 | Msa0903730 | 0.818047 | 2.403293e-52 | -8.615850e-47 |
| Msa0200370 | Msa0961420 | -0.805384 | 1.369918e-49 | -8.615850e-47 |
| Msa0200370 | Msa0964680 | 0.806544 | 7.813359e-50 | -8.615850e-47 |
| Msa0200370 | Msa1072350 | 0.809119 | 2.215187e-50 | -8.615850e-47 |
| Msa0200370 | Msa1080790 | 0.801077 | 1.067587e-48 | -8.615850e-47 |
| Msa0200370 | Msa1118140 | 0.800669 | 1.292842e-48 | -8.615850e-47 |
| Msa0200370 | Msa1118930 | 0.803954 | 2.724015e-49 | -8.615850e-47 |
| Msa0200370 | Msa1132950 | 0.840626 | 7.765991e-58 | -8.615850e-47 |
| Msa0200370 | Msa1187520 | 0.800354 | 1.499368e-48 | -8.615850e-47 |
| Msa0200370 | Msa1217810 | 0.822465 | 2.335451e-53 | -8.615850e-47 |
| Msa0200370 | Msa1244830 | 0.802369 | 5.797023e-49 | -8.615850e-47 |
| Msa0200370 | Msa1272960 | 0.807850 | 4.132968e-50 | -8.615850e-47 |
| Msa0200370 | Msa1282920 | 0.822450 | 2.354137e-53 | -8.615850e-47 |
| Msa0200370 | Msa1292730 | 0.821326 | 4.284860e-53 | -8.615850e-47 |
| Msa0200370 | Msa1305750 | 0.822790 | 1.961974e-53 | -8.615850e-47 |
| Msa0200370 | Msa1419110 | 0.806135 | 9.530507e-50 | -8.615850e-47 |
| Msa0200370 | Msa1421870 | 0.810094 | 1.367339e-50 | -8.615850e-47 |
| Msa0200370 | Msa1423450 | 0.803367 | 3.605965e-49 | -8.615850e-47 |
| Msa0200370 | Msa1427830 | 0.812880 | 3.392766e-51 | -8.615850e-47 |
| Msa0200370 | Msa1432790 | 0.973085 | 7.781401e-136 | -8.615850e-47 |
| Msa0200370 | Msa1432800 | 0.954263 | 4.384233e-112 | -8.615850e-47 |
| Msa0200370 | Msa1442290 | 0.811100 | 8.290817e-51 | -8.615850e-47 |
| Msa0200370 | Msa1450020 | 0.837092 | 6.372855e-57 | -8.615850e-47 |
| Msa0200370 | Msa1454110 | 0.805763 | 1.141037e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200370 | MtrunA17_Chr2g0295501 | 85.000 | 60 | 6 | 1 | 1 | 57 | 1 | 60 | 2.49e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGACCCACTTAAAATTTA+AGG | 0.130799 | 2_1:-20159128 | None:intergenic |
| GTTGGTACTTGCTTCAAATT+AGG | 0.234509 | 2_1:-20157033 | None:intergenic |
| GTTGGTACTTGCTTCAAATT+AGG | 0.234509 | 2_1:-20158822 | None:intergenic |
| AAGTAGTGCTTAAAATTTAA+AGG | 0.241643 | 2_1:-20159103 | None:intergenic |
| AGGGTCTACCCCAACGATTT+TGG | 0.250377 | 2_1:-20159083 | None:intergenic |
| CTAGTAGAGAGTACATATTT+TGG | 0.262256 | 2_1:-20159284 | None:intergenic |
| CCTCCAACATTTAGCATCTA+TGG | 0.267969 | 2_1:+20157102 | Msa0200370:exon |
| CCTCCAACATTTAGCATCTA+TGG | 0.267969 | 2_1:+20158891 | Msa0200370:CDS |
| AGCATGCAAGATCGTGCTTC+TGG | 0.277502 | 2_1:+20157208 | Msa0200370:CDS |
| AGCATGCAAGATCGTGCTTC+TGG | 0.277502 | 2_1:+20158997 | Msa0200370:CDS |
| CTAAGGAAGATTGGCTTAGA+AGG | 0.290742 | 2_1:+20157142 | Msa0200370:CDS |
| CTAAGGAAGATTGGCTTAGA+AGG | 0.290742 | 2_1:+20158931 | Msa0200370:CDS |
| TGCATGCTGACCCTTCTTGT+TGG | 0.323679 | 2_1:-20157193 | None:intergenic |
| TGCATGCTGACCCTTCTTGT+TGG | 0.323679 | 2_1:-20158982 | None:intergenic |
| GCATGCAAGATCGTGCTTCT+GGG | 0.397696 | 2_1:+20157209 | Msa0200370:CDS |
| GCATGCAAGATCGTGCTTCT+GGG | 0.397696 | 2_1:+20158998 | Msa0200370:CDS |
| AGTAGTGCTTAAAATTTAAA+GGG | 0.405868 | 2_1:-20159102 | None:intergenic |
| TGGGTCTCAGTTTCATGTTA+TGG | 0.412027 | 2_1:+20159142 | Msa0200370:three_prime_UTR |
| TCATCAGACCTAAGGAAGAT+TGG | 0.412607 | 2_1:+20157133 | Msa0200370:CDS |
| TCATCAGACCTAAGGAAGAT+TGG | 0.412607 | 2_1:+20158922 | Msa0200370:CDS |
| AAAGGGGACCCAAAATCGTT+GGG | 0.417735 | 2_1:+20159074 | Msa0200370:three_prime_UTR |
| ATCAAAGTCTTCTGTAGCTA+AGG | 0.443745 | 2_1:+20159214 | Msa0200370:three_prime_UTR |
| CTTCTAAGCCAATCTTCCTT+AGG | 0.445559 | 2_1:-20157141 | None:intergenic |
| CTTCTAAGCCAATCTTCCTT+AGG | 0.445559 | 2_1:-20158930 | None:intergenic |
| GCTTCTGGGGTTAGCAAGGA+TGG | 0.500998 | 2_1:+20157223 | Msa0200370:CDS |
| GCTTCTGGGGTTAGCAAGGA+TGG | 0.500998 | 2_1:+20159012 | Msa0200370:exon |
| TCGAATGTAAGTTACCCAAA+GGG | 0.506137 | 2_1:+20159057 | Msa0200370:three_prime_UTR |
| CAAAGGGGACCCAAAATCGT+TGG | 0.523644 | 2_1:+20159073 | Msa0200370:three_prime_UTR |
| TAAGGAAGATTGGCTTAGAA+GGG | 0.540665 | 2_1:+20157143 | Msa0200370:CDS |
| TAAGGAAGATTGGCTTAGAA+GGG | 0.540665 | 2_1:+20158932 | Msa0200370:CDS |
| TCAAAGTCTTCTGTAGCTAA+GGG | 0.558131 | 2_1:+20159215 | Msa0200370:three_prime_UTR |
| CACCTCCTTCATCAGACCTA+AGG | 0.563117 | 2_1:+20157125 | Msa0200370:CDS |
| CACCTCCTTCATCAGACCTA+AGG | 0.563117 | 2_1:+20158914 | Msa0200370:CDS |
| GTGTGTGTATTGATTGATGT+TGG | 0.567759 | 2_1:-20157051 | None:intergenic |
| GTGTGTGTATTGATTGATGT+TGG | 0.567759 | 2_1:-20158840 | None:intergenic |
| CATGCAAGATCGTGCTTCTG+GGG | 0.577242 | 2_1:+20157210 | Msa0200370:CDS |
| CATGCAAGATCGTGCTTCTG+GGG | 0.577242 | 2_1:+20158999 | Msa0200370:CDS |
| GTGCCATAGATGCTAAATGT+TGG | 0.578229 | 2_1:-20157105 | None:intergenic |
| GTGCCATAGATGCTAAATGT+TGG | 0.578229 | 2_1:-20158894 | None:intergenic |
| TCGTGCTTCTGGGGTTAGCA+AGG | 0.589442 | 2_1:+20157219 | Msa0200370:CDS |
| TCGTGCTTCTGGGGTTAGCA+AGG | 0.589442 | 2_1:+20159008 | Msa0200370:exon |
| ATCGAATGTAAGTTACCCAA+AGG | 0.592367 | 2_1:+20159056 | Msa0200370:three_prime_UTR |
| ATCTTCCTTAGGTCTGATGA+AGG | 0.601958 | 2_1:-20157130 | None:intergenic |
| ATCTTCCTTAGGTCTGATGA+AGG | 0.601958 | 2_1:-20158919 | None:intergenic |
| CCATAGATGCTAAATGTTGG+AGG | 0.611722 | 2_1:-20157102 | None:intergenic |
| CCATAGATGCTAAATGTTGG+AGG | 0.611722 | 2_1:-20158891 | None:intergenic |
| TTCCTTAGGTCTGATGAAGG+AGG | 0.672818 | 2_1:-20157127 | None:intergenic |
| TTCCTTAGGTCTGATGAAGG+AGG | 0.672818 | 2_1:-20158916 | None:intergenic |
| AAGGGGACCCAAAATCGTTG+GGG | 0.681552 | 2_1:+20159075 | Msa0200370:three_prime_UTR |
| CGAATGTAAGTTACCCAAAG+GGG | 0.682969 | 2_1:+20159058 | Msa0200370:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTTCATTAAATGT+AGG | + | chr2_1:20157762-20157781 | Msa0200370:intron | 10.0% |
| !!! | TTTTTTCTTATAAATATGAT+CGG | - | chr2_1:20158514-20158533 | None:intergenic | 10.0% |
| !! | TCTATACAAAACTTTAATTA+AGG | + | chr2_1:20157698-20157717 | Msa0200370:intron | 15.0% |
| !!! | TAATATAAACCAAACATTTT+AGG | - | chr2_1:20158342-20158361 | None:intergenic | 15.0% |
| !!! | TTTTTGCTTATAAATATGAT+CGG | + | chr2_1:20158630-20158649 | Msa0200370:intron | 15.0% |
| !!! | TTTCCTTTTTCTACTATAAA+AGG | + | chr2_1:20156999-20157018 | Msa0200370:five_prime_UTR | 20.0% |
| !!! | TTCCTTTTTCTACTATAAAA+GGG | + | chr2_1:20157000-20157019 | Msa0200370:five_prime_UTR | 20.0% |
| !! | AGTAGTGCTTAAAATTTAAA+GGG | - | chr2_1:20157316-20157335 | None:intergenic | 20.0% |
| !! | AAGTAGTGCTTAAAATTTAA+AGG | - | chr2_1:20157317-20157336 | None:intergenic | 20.0% |
| !! | AACTATTGTATGTATATCAA+GGG | - | chr2_1:20157799-20157818 | None:intergenic | 20.0% |
| !! | AAACTATTGTATGTATATCA+AGG | - | chr2_1:20157800-20157819 | None:intergenic | 20.0% |
| !! | ATGAAGTAGTGAAAAATAAA+TGG | - | chr2_1:20157923-20157942 | None:intergenic | 20.0% |
| !!! | TATAATGTATCTAGTCTTAT+TGG | + | chr2_1:20158558-20158577 | Msa0200370:intron | 20.0% |
| !!! | TTTCCTTTTTCTACTATAAA+AGG | + | chr2_1:20156999-20157018 | Msa0200370:five_prime_UTR | 20.0% |
| !!! | TTCCTTTTTCTACTATAAAA+GGG | + | chr2_1:20157000-20157019 | Msa0200370:five_prime_UTR | 20.0% |
| !! | AGTAGTGCTTAAAATTTAAA+GGG | - | chr2_1:20157316-20157335 | None:intergenic | 20.0% |
| !! | AAGTAGTGCTTAAAATTTAA+AGG | - | chr2_1:20157317-20157336 | None:intergenic | 20.0% |
| !! | TTCCCTTTTATAGTAGAAAA+AGG | - | chr2_1:20157005-20157024 | None:intergenic | 25.0% |
| !! | TTTTTCTACTATAAAAGGGA+AGG | + | chr2_1:20157004-20157023 | Msa0200370:five_prime_UTR | 25.0% |
| !! | GCTTTAATAGACAAGTTTTA+TGG | + | chr2_1:20157169-20157188 | Msa0200370:CDS | 25.0% |
| !! | ACTTTGCCTTAAATTTTAAG+TGG | + | chr2_1:20157333-20157352 | Msa0200370:intron | 25.0% |
| !!! | CTTTGCCTTAAATTTTAAGT+GGG | + | chr2_1:20157334-20157353 | Msa0200370:intron | 25.0% |
| !!! | GCTTTAGAACATGATTTATA+TGG | - | chr2_1:20157574-20157593 | None:intergenic | 25.0% |
| ! | CACTCTTCTAACTTATATAT+TGG | + | chr2_1:20157733-20157752 | Msa0200370:intron | 25.0% |
| ! | AAAGTATACCATATCTACAT+GGG | + | chr2_1:20157878-20157897 | Msa0200370:intron | 25.0% |
| !!! | TTATTTTTCACTACTTCATG+CGG | + | chr2_1:20157924-20157943 | Msa0200370:intron | 25.0% |
| ! | TTCACAAATATCATGTAGAT+GGG | - | chr2_1:20158032-20158051 | None:intergenic | 25.0% |
| ! | ATATTTGTGAACCTATGAAA+GGG | + | chr2_1:20158041-20158060 | Msa0200370:intron | 25.0% |
| !! | AGAAAAATGGATTTGTAACA+TGG | + | chr2_1:20158069-20158088 | Msa0200370:intron | 25.0% |
| !! | TTTAGGTTAATTGAGTCTTT+GGG | - | chr2_1:20158325-20158344 | None:intergenic | 25.0% |
| !!! | TTTTAGGTTAATTGAGTCTT+TGG | - | chr2_1:20158326-20158345 | None:intergenic | 25.0% |
| ! | CTCAATTAACCTAAAATGTT+TGG | + | chr2_1:20158330-20158349 | Msa0200370:intron | 25.0% |
| ! | AAATCACAATTTCGTTGAAT+GGG | - | chr2_1:20158484-20158503 | None:intergenic | 25.0% |
| ! | TAAATCACAATTTCGTTGAA+TGG | - | chr2_1:20158485-20158504 | None:intergenic | 25.0% |
| ! | TTCTTATAAATATGATCGGA+GGG | - | chr2_1:20158510-20158529 | None:intergenic | 25.0% |
| ! | TTTCTTATAAATATGATCGG+AGG | - | chr2_1:20158511-20158530 | None:intergenic | 25.0% |
| !! | TAAGAAAAAAAGAGCTTTGT+AGG | + | chr2_1:20158524-20158543 | Msa0200370:intron | 25.0% |
| !! | TTATTGGTCTATATAAAGAC+CGG | + | chr2_1:20158574-20158593 | Msa0200370:intron | 25.0% |
| !!! | AAAACAACTTTTGAAGTTCA+TGG | - | chr2_1:20158614-20158633 | None:intergenic | 25.0% |
| !! | TTCCCTTTTATAGTAGAAAA+AGG | - | chr2_1:20157005-20157024 | None:intergenic | 25.0% |
| !! | TTTTTCTACTATAAAAGGGA+AGG | + | chr2_1:20157004-20157023 | Msa0200370:five_prime_UTR | 25.0% |
| !! | GCTTTAATAGACAAGTTTTA+TGG | + | chr2_1:20157169-20157188 | Msa0200370:CDS | 25.0% |
| !! | ACTTTGCCTTAAATTTTAAG+TGG | + | chr2_1:20157333-20157352 | Msa0200370:intron | 25.0% |
| !!! | CTTTGCCTTAAATTTTAAGT+GGG | + | chr2_1:20157334-20157353 | Msa0200370:intron | 25.0% |
| !!! | TAGTAGAGAGTACATATTTT+GGG | - | chr2_1:20159286-20159305 | None:intergenic | 25.0% |
| TGAGACCCACTTAAAATTTA+AGG | - | chr2_1:20157342-20157361 | None:intergenic | 30.0% | |
| CAGTTTCATCTTTCATGTTA+TGG | + | chr2_1:20157360-20157379 | Msa0200370:intron | 30.0% | |
| ATATGTAGAAAAAAGCTCGA+AGG | + | chr2_1:20157390-20157409 | Msa0200370:intron | 30.0% | |
| CAAAGTATACCATATCTACA+TGG | + | chr2_1:20157877-20157896 | Msa0200370:intron | 30.0% | |
| AAGTATACCATATCTACATG+GGG | + | chr2_1:20157879-20157898 | Msa0200370:intron | 30.0% | |
| ATAAATGGCTTAGATTTCAC+TGG | - | chr2_1:20157908-20157927 | None:intergenic | 30.0% | |
| ! | TATTTTTCACTACTTCATGC+GGG | + | chr2_1:20157925-20157944 | Msa0200370:intron | 30.0% |
| GTTCACAAATATCATGTAGA+TGG | - | chr2_1:20158033-20158052 | None:intergenic | 30.0% | |
| GATATTTGTGAACCTATGAA+AGG | + | chr2_1:20158040-20158059 | Msa0200370:intron | 30.0% | |
| !! | TGGAAAAATGATTAGCTCTA+AGG | + | chr2_1:20158089-20158108 | Msa0200370:intron | 30.0% |
| !! | GGAAAAATGATTAGCTCTAA+GGG | + | chr2_1:20158090-20158109 | Msa0200370:intron | 30.0% |
| AGTCTCAGTTTCAATCATAT+TGG | + | chr2_1:20158124-20158143 | Msa0200370:intron | 30.0% | |
| GTGATATCATAGTTGAGTTA+TGG | - | chr2_1:20158186-20158205 | None:intergenic | 30.0% | |
| TGAGACCCACTTAAAATTTA+AGG | - | chr2_1:20157342-20157361 | None:intergenic | 30.0% | |
| TATGTAGAAAAAAAGCTCGA+AGG | + | chr2_1:20159173-20159192 | Msa0200370:three_prime_UTR | 30.0% | |
| !! | CTAGTAGAGAGTACATATTT+TGG | - | chr2_1:20159287-20159306 | None:intergenic | 30.0% |
| GTTGGTACTTGCTTCAAATT+AGG | - | chr2_1:20157036-20157055 | None:intergenic | 35.0% | |
| !! | GTGTGTGTATTGATTGATGT+TGG | - | chr2_1:20157054-20157073 | None:intergenic | 35.0% |
| !! | TAAGGAAGATTGGCTTAGAA+GGG | + | chr2_1:20157143-20157162 | Msa0200370:CDS | 35.0% |
| !! | AGTTTTATGGTCCAACAAGA+AGG | + | chr2_1:20157182-20157201 | Msa0200370:CDS | 35.0% |
| ! | GTTTTATGGTCCAACAAGAA+GGG | + | chr2_1:20157183-20157202 | Msa0200370:CDS | 35.0% |
| ATCGAATGTAAGTTACCCAA+AGG | + | chr2_1:20157267-20157286 | Msa0200370:intron | 35.0% | |
| TCGAATGTAAGTTACCCAAA+GGG | + | chr2_1:20157268-20157287 | Msa0200370:intron | 35.0% | |
| TCAAGTGGTATGATAGCTTA+TGG | - | chr2_1:20157606-20157625 | None:intergenic | 35.0% | |
| AAGCTATCATACCACTTGAT+AGG | + | chr2_1:20157607-20157626 | Msa0200370:intron | 35.0% | |
| AGCTATCATACCACTTGATA+GGG | + | chr2_1:20157608-20157627 | Msa0200370:intron | 35.0% | |
| !! | CATGTTGTTTCATCTCTTGA+TGG | - | chr2_1:20157676-20157695 | None:intergenic | 35.0% |
| ! | AGCATATTTAGGATCACCAA+AGG | + | chr2_1:20157831-20157850 | Msa0200370:intron | 35.0% |
| ! | GCATATTTAGGATCACCAAA+GGG | + | chr2_1:20157832-20157851 | Msa0200370:intron | 35.0% |
| TGTTCCTTTGATTACCTCTA+GGG | - | chr2_1:20157859-20157878 | None:intergenic | 35.0% | |
| TTGTTCCTTTGATTACCTCT+AGG | - | chr2_1:20157860-20157879 | None:intergenic | 35.0% | |
| ! | ATTTTTCACTACTTCATGCG+GGG | + | chr2_1:20157926-20157945 | Msa0200370:intron | 35.0% |
| CACTCCATTGAAAATTTCAC+TGG | + | chr2_1:20157994-20158013 | Msa0200370:intron | 35.0% | |
| TCCATTGAAAATTTCACTGG+AGG | + | chr2_1:20157997-20158016 | Msa0200370:intron | 35.0% | |
| CCATTGAAAATTTCACTGGA+GGG | + | chr2_1:20157998-20158017 | Msa0200370:intron | 35.0% | |
| CATTGAAAATTTCACTGGAG+GGG | + | chr2_1:20157999-20158018 | Msa0200370:intron | 35.0% | |
| ! | TTTTCTGACTTCCCTTTCAT+AGG | - | chr2_1:20158055-20158074 | None:intergenic | 35.0% |
| TGAAAGGGAAGTCAGAAAAA+TGG | + | chr2_1:20158056-20158075 | Msa0200370:intron | 35.0% | |
| !! | AAATGATTAGCTCTAAGGGT+TGG | + | chr2_1:20158094-20158113 | Msa0200370:intron | 35.0% |
| CATATTGGAAACATGCCATT+TGG | + | chr2_1:20158139-20158158 | Msa0200370:intron | 35.0% | |
| ATACTCTAGACTCACAAGAT+AGG | + | chr2_1:20158248-20158267 | Msa0200370:intron | 35.0% | |
| AAACCACTTTGAATTTGGTC+GGG | - | chr2_1:20158407-20158426 | None:intergenic | 35.0% | |
| CAAACCACTTTGAATTTGGT+CGG | - | chr2_1:20158408-20158427 | None:intergenic | 35.0% | |
| GAACCAAACCACTTTGAATT+TGG | - | chr2_1:20158412-20158431 | None:intergenic | 35.0% | |
| CATGGAATGACAAATGTATC+CGG | - | chr2_1:20158596-20158615 | None:intergenic | 35.0% | |
| ! | CACTTTTATGCGCGTTAAAT+AGG | + | chr2_1:20158680-20158699 | Msa0200370:intron | 35.0% |
| ! | GTTTTACACCAATAGCTAAG+AGG | + | chr2_1:20158753-20158772 | Msa0200370:intron | 35.0% |
| GAAAGATTCCTCTTAGCTAT+TGG | - | chr2_1:20158764-20158783 | None:intergenic | 35.0% | |
| GTTGGTACTTGCTTCAAATT+AGG | - | chr2_1:20157036-20157055 | None:intergenic | 35.0% | |
| !! | GTGTGTGTATTGATTGATGT+TGG | - | chr2_1:20157054-20157073 | None:intergenic | 35.0% |
| !! | TAAGGAAGATTGGCTTAGAA+GGG | + | chr2_1:20157143-20157162 | Msa0200370:CDS | 35.0% |
| !! | AGTTTTATGGTCCAACAAGA+AGG | + | chr2_1:20157182-20157201 | Msa0200370:CDS | 35.0% |
| ! | GTTTTATGGTCCAACAAGAA+GGG | + | chr2_1:20157183-20157202 | Msa0200370:CDS | 35.0% |
| ATCGAATGTAAGTTACCCAA+AGG | + | chr2_1:20157267-20157286 | Msa0200370:intron | 35.0% | |
| TCGAATGTAAGTTACCCAAA+GGG | + | chr2_1:20157268-20157287 | Msa0200370:intron | 35.0% | |
| ATCAAAGTCTTCTGTAGCTA+AGG | + | chr2_1:20157430-20157449 | Msa0200370:intron | 35.0% | |
| TCAAAGTCTTCTGTAGCTAA+GGG | + | chr2_1:20157431-20157450 | Msa0200370:intron | 35.0% | |
| CCATAGATGCTAAATGTTGG+AGG | - | chr2_1:20157105-20157124 | None:intergenic | 40.0% | |
| CCTCCAACATTTAGCATCTA+TGG | + | chr2_1:20157102-20157121 | Msa0200370:exon | 40.0% | |
| GTGCCATAGATGCTAAATGT+TGG | - | chr2_1:20157108-20157127 | None:intergenic | 40.0% | |
| ATCTTCCTTAGGTCTGATGA+AGG | - | chr2_1:20157133-20157152 | None:intergenic | 40.0% | |
| TCATCAGACCTAAGGAAGAT+TGG | + | chr2_1:20157133-20157152 | Msa0200370:CDS | 40.0% | |
| CTTCTAAGCCAATCTTCCTT+AGG | - | chr2_1:20157144-20157163 | None:intergenic | 40.0% | |
| !! | CTAAGGAAGATTGGCTTAGA+AGG | + | chr2_1:20157142-20157161 | Msa0200370:CDS | 40.0% |
| CGAATGTAAGTTACCCAAAG+GGG | + | chr2_1:20157269-20157288 | Msa0200370:intron | 40.0% | |
| !! | GATCATTGACTTGTTGCTCT+CGG | - | chr2_1:20157648-20157667 | None:intergenic | 40.0% |
| GGTGATCCTAAATATGCTAG+CGG | - | chr2_1:20157829-20157848 | None:intergenic | 40.0% | |
| ! | CCCTCCAGTGAAATTTTCAA+TGG | - | chr2_1:20158001-20158020 | None:intergenic | 40.0% |
| ! | TGAGTTATGGTTGATGCACT+GGG | - | chr2_1:20158173-20158192 | None:intergenic | 40.0% |
| ! | TTGAGTTATGGTTGATGCAC+TGG | - | chr2_1:20158174-20158193 | None:intergenic | 40.0% |
| CTTGTCGATGATCTGAGAAA+CGG | + | chr2_1:20158205-20158224 | Msa0200370:intron | 40.0% | |
| GACTCACACATGACATCTTT+GGG | - | chr2_1:20158291-20158310 | None:intergenic | 40.0% | |
| TGACTCACACATGACATCTT+TGG | - | chr2_1:20158292-20158311 | None:intergenic | 40.0% | |
| AATTGAGTCTTTGGGCTTAG+CGG | - | chr2_1:20158317-20158336 | None:intergenic | 40.0% | |
| CGACCAAATTCAAAGTGGTT+TGG | + | chr2_1:20158406-20158425 | Msa0200370:intron | 40.0% | |
| ! | GAATGGGTTTAGTTCACATG+TGG | - | chr2_1:20158468-20158487 | None:intergenic | 40.0% |
| CCATAGATGCTAAATGTTGG+AGG | - | chr2_1:20157105-20157124 | None:intergenic | 40.0% | |
| CCTCCAACATTTAGCATCTA+TGG | + | chr2_1:20157102-20157121 | Msa0200370:exon | 40.0% | |
| GTGCCATAGATGCTAAATGT+TGG | - | chr2_1:20157108-20157127 | None:intergenic | 40.0% | |
| ATCTTCCTTAGGTCTGATGA+AGG | - | chr2_1:20157133-20157152 | None:intergenic | 40.0% | |
| TCATCAGACCTAAGGAAGAT+TGG | + | chr2_1:20157133-20157152 | Msa0200370:CDS | 40.0% | |
| CTTCTAAGCCAATCTTCCTT+AGG | - | chr2_1:20157144-20157163 | None:intergenic | 40.0% | |
| !! | CTAAGGAAGATTGGCTTAGA+AGG | + | chr2_1:20157142-20157161 | Msa0200370:CDS | 40.0% |
| CGAATGTAAGTTACCCAAAG+GGG | + | chr2_1:20157269-20157288 | Msa0200370:intron | 40.0% | |
| TGGGTCTCAGTTTCATGTTA+TGG | + | chr2_1:20159142-20159161 | Msa0200370:three_prime_UTR | 40.0% | |
| TTCCTTAGGTCTGATGAAGG+AGG | - | chr2_1:20157130-20157149 | None:intergenic | 45.0% | |
| !! | AACGATTTTGGGTCCCCTTT+GGG | - | chr2_1:20157285-20157304 | None:intergenic | 45.0% |
| AAAGGGGACCCAAAATCGTT+GGG | + | chr2_1:20157285-20157304 | Msa0200370:intron | 45.0% | |
| CTTCCTCCGCTAGCATATTT+AGG | + | chr2_1:20157820-20157839 | Msa0200370:intron | 45.0% | |
| GATCCTAAATATGCTAGCGG+AGG | - | chr2_1:20157826-20157845 | None:intergenic | 45.0% | |
| ! | GACATCTTTGGGTTCAAGTG+TGG | - | chr2_1:20158280-20158299 | None:intergenic | 45.0% |
| CACTTTGAATTTGGTCGGGT+TGG | - | chr2_1:20158403-20158422 | None:intergenic | 45.0% | |
| CAACCCGACCAAATTCAAAG+TGG | + | chr2_1:20158401-20158420 | Msa0200370:intron | 45.0% | |
| TTCCTTAGGTCTGATGAAGG+AGG | - | chr2_1:20157130-20157149 | None:intergenic | 45.0% | |
| !! | AACGATTTTGGGTCCCCTTT+GGG | - | chr2_1:20157285-20157304 | None:intergenic | 45.0% |
| AAAGGGGACCCAAAATCGTT+GGG | + | chr2_1:20157285-20157304 | Msa0200370:intron | 45.0% | |
| !! | AAAATTATAAAATAAATCAA+TGG | - | chr2_1:20158366-20158385 | None:intergenic | 5.0% |
| !!! | TTGATTTATTTTATAATTTT+AGG | + | chr2_1:20158366-20158385 | Msa0200370:intron | 5.0% |
| CACCTCCTTCATCAGACCTA+AGG | + | chr2_1:20157125-20157144 | Msa0200370:CDS | 50.0% | |
| TGCATGCTGACCCTTCTTGT+TGG | - | chr2_1:20157196-20157215 | None:intergenic | 50.0% | |
| AGCATGCAAGATCGTGCTTC+TGG | + | chr2_1:20157208-20157227 | Msa0200370:CDS | 50.0% | |
| GCATGCAAGATCGTGCTTCT+GGG | + | chr2_1:20157209-20157228 | Msa0200370:CDS | 50.0% | |
| CATGCAAGATCGTGCTTCTG+GGG | + | chr2_1:20157210-20157229 | Msa0200370:CDS | 50.0% | |
| !! | CAACGATTTTGGGTCCCCTT+TGG | - | chr2_1:20157286-20157305 | None:intergenic | 50.0% |
| CAAAGGGGACCCAAAATCGT+TGG | + | chr2_1:20157284-20157303 | Msa0200370:intron | 50.0% | |
| AAGGGGACCCAAAATCGTTG+GGG | + | chr2_1:20157286-20157305 | Msa0200370:intron | 50.0% | |
| ! | GGGTCTACCCCAACGATTTT+GGG | - | chr2_1:20157296-20157315 | None:intergenic | 50.0% |
| ! | AGGGTCTACCCCAACGATTT+TGG | - | chr2_1:20157297-20157316 | None:intergenic | 50.0% |
| ! | ATACCACTTGATAGGGCGTC+TGG | + | chr2_1:20157615-20157634 | Msa0200370:intron | 50.0% |
| ! | GATTACCTCTAGGGACCCTT+TGG | - | chr2_1:20157850-20157869 | None:intergenic | 50.0% |
| GGGTCCCTAGAGGTAATCAA+AGG | + | chr2_1:20157852-20157871 | Msa0200370:intron | 50.0% | |
| CTGGACTCCCCATGTAGATA+TGG | - | chr2_1:20157889-20157908 | None:intergenic | 50.0% | |
| CACTGGGAAGAAGCTCCAAA+TGG | - | chr2_1:20158157-20158176 | None:intergenic | 50.0% | |
| !! | GAATTTGGTCGGGTTGGTTC+AGG | - | chr2_1:20158397-20158416 | None:intergenic | 50.0% |
| CACCTCCTTCATCAGACCTA+AGG | + | chr2_1:20157125-20157144 | Msa0200370:CDS | 50.0% | |
| TGCATGCTGACCCTTCTTGT+TGG | - | chr2_1:20157196-20157215 | None:intergenic | 50.0% | |
| AGCATGCAAGATCGTGCTTC+TGG | + | chr2_1:20157208-20157227 | Msa0200370:CDS | 50.0% | |
| GCATGCAAGATCGTGCTTCT+GGG | + | chr2_1:20157209-20157228 | Msa0200370:CDS | 50.0% | |
| CATGCAAGATCGTGCTTCTG+GGG | + | chr2_1:20157210-20157229 | Msa0200370:CDS | 50.0% | |
| !! | CAACGATTTTGGGTCCCCTT+TGG | - | chr2_1:20157286-20157305 | None:intergenic | 50.0% |
| CAAAGGGGACCCAAAATCGT+TGG | + | chr2_1:20157284-20157303 | Msa0200370:intron | 50.0% | |
| AAGGGGACCCAAAATCGTTG+GGG | + | chr2_1:20157286-20157305 | Msa0200370:intron | 50.0% | |
| ! | GGGTCTACCCCAACGATTTT+GGG | - | chr2_1:20157296-20157315 | None:intergenic | 50.0% |
| ! | AGGGTCTACCCCAACGATTT+TGG | - | chr2_1:20157297-20157316 | None:intergenic | 50.0% |
| !! | TCGTGCTTCTGGGGTTAGCA+AGG | + | chr2_1:20157219-20157238 | Msa0200370:CDS | 55.0% |
| !! | GCTTCTGGGGTTAGCAAGGA+TGG | + | chr2_1:20157223-20157242 | Msa0200370:CDS | 55.0% |
| TCACCAGACGCCCTATCAAG+TGG | - | chr2_1:20157621-20157640 | None:intergenic | 55.0% | |
| GATCACCAAAGGGTCCCTAG+AGG | + | chr2_1:20157842-20157861 | Msa0200370:intron | 55.0% | |
| !! | TCGTGCTTCTGGGGTTAGCA+AGG | + | chr2_1:20157219-20157238 | Msa0200370:CDS | 55.0% |
| !! | GCTTCTGGGGTTAGCAAGGA+TGG | + | chr2_1:20157223-20157242 | Msa0200370:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 20156976 | 20159430 | 20156976 | ID=Msa0200370;Name=Msa0200370 |
| chr2_1 | mRNA | 20156976 | 20159430 | 20156976 | ID=Msa0200370-mRNA-1;Parent=Msa0200370;Name=Msa0200370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=145|1|1|1|1|1|2|405|122 |
| chr2_1 | exon | 20156976 | 20157273 | 20156976 | ID=Msa0200370-mRNA-1:exon:8342;Parent=Msa0200370-mRNA-1 |
| chr2_1 | exon | 20158810 | 20159430 | 20158810 | ID=Msa0200370-mRNA-1:exon:8343;Parent=Msa0200370-mRNA-1 |
| chr2_1 | five_prime_UTR | 20156976 | 20157120 | 20156976 | ID=Msa0200370-mRNA-1:five_prime_utr;Parent=Msa0200370-mRNA-1 |
| chr2_1 | CDS | 20157121 | 20157273 | 20157121 | ID=Msa0200370-mRNA-1:cds;Parent=Msa0200370-mRNA-1 |
| chr2_1 | CDS | 20158810 | 20159025 | 20158810 | ID=Msa0200370-mRNA-1:cds;Parent=Msa0200370-mRNA-1 |
| chr2_1 | three_prime_UTR | 20159026 | 20159430 | 20159026 | ID=Msa0200370-mRNA-1:three_prime_utr;Parent=Msa0200370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
