AlfalfaGEDB | Msa1432790

M. sativa cultivar zhongmu-4 / Msa1432790

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432790	KEH37197.1	80.000	65	13	0	1	65	1	65	3.48e-29	108

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432790	A0A072V5T5	80.000	65	13	0	1	65	1	65	1.66e-29	108

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0200370	Msa1432790	0.973085	7.781401e-136	-8.615850e-47
Msa0200870	Msa1432790	0.802190	6.311302e-49	-8.615850e-47
Msa0243470	Msa1432790	0.819575	1.080870e-52	-8.615850e-47
Msa0278670	Msa1432790	0.801048	1.082233e-48	-8.615850e-47
Msa0281270	Msa1432790	0.978869	9.759643e-147	-8.615850e-47
Msa0281940	Msa1432790	0.833540	5.029416e-56	-8.615850e-47
Msa0282170	Msa1432790	0.829226	5.793868e-55	-8.615850e-47
Msa0309550	Msa1432790	0.844070	9.494142e-59	-8.615850e-47
Msa0318070	Msa1432790	0.803402	3.546682e-49	-8.615850e-47
Msa0320440	Msa1432790	0.988352	1.109971e-173	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432790	MtrunA17_Chr2g0295501	89.286	56	6	0	1	56	1	56	2.45e-31	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 13 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCATGCAAGATCGTGCTTC+TGG	0.277502	tig0027178:-7786	Msa1432790:CDS
ATCTTCCTTAGGTCTGATGA+AGG	0.601958	tig0027178:+7864	None:intergenic
CACCTCCTTCATCAGACCTA+AGG	0.563117	tig0027178:-7869	Msa1432790:CDS
CATGCAAGATCGTGCTTCTG+GGG	0.577242	tig0027178:-7784	Msa1432790:CDS
CTAAGGAAGATTGGCTTAGA+AGG	0.290742	tig0027178:-7852	Msa1432790:CDS
CTTCTAAGCCAATCTTCCTT+AGG	0.445559	tig0027178:+7853	None:intergenic
GCATGCAAGATCGTGCTTCT+GGG	0.397696	tig0027178:-7785	Msa1432790:CDS
GCTTCTGGGGTTAGCAAGGA+TGG	0.500998	tig0027178:-7771	Msa1432790:CDS
TAAGGAAGATTGGCTTAGAA+GGG	0.540665	tig0027178:-7851	Msa1432790:CDS
TCATCAGACCTAAGGAAGAT+TGG	0.412607	tig0027178:-7861	Msa1432790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGACCCACTTAAAATTTA+AGG	+	tig0027178:7796-7815	None:intergenic	30.0%
TATGTAGAAAAAAAGCTCGA+AGG	-	tig0027178:7838-7857	Msa1432790:CDS	30.0%
ATCGAATGTAAGTTACCCAA+AGG	-	tig0027178:7721-7740	Msa1432790:intron	35.0%
TCGAATGTAAGTTACCCAAA+GGG	-	tig0027178:7722-7741	Msa1432790:intron	35.0%
ATCTTCCTTAGGTCTGATGA+AGG	+	tig0027178:7587-7606	None:intergenic	40.0%
TCATCAGACCTAAGGAAGAT+TGG	-	tig0027178:7587-7606	Msa1432790:CDS	40.0%
CTTCTAAGCCAATCTTCCTT+AGG	+	tig0027178:7598-7617	None:intergenic	40.0%
CGAATGTAAGTTACCCAAAG+GGG	-	tig0027178:7723-7742	Msa1432790:intron	40.0%
TGGGTCTCAGTTTCATGTTA+TGG	-	tig0027178:7807-7826	Msa1432790:CDS	40.0%
TTCCTTAGGTCTGATGAAGG+AGG	+	tig0027178:7584-7603	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027178	gene	7575	7895	7575	ID=Msa1432790;Name=Msa1432790
tig0027178	mRNA	7575	7895	7575	ID=Msa1432790-mRNA-1;Parent=Msa1432790;Name=Msa1432790-mRNA-1;_AED=0.10;_eAED=0.32;_QI=0\|0\|0\|1\|1\|1\|2\|0\|67
tig0027178	exon	7743	7895	7743	ID=Msa1432790-mRNA-1:exon:8322;Parent=Msa1432790-mRNA-1
tig0027178	exon	7575	7625	7575	ID=Msa1432790-mRNA-1:exon:8321;Parent=Msa1432790-mRNA-1
tig0027178	CDS	7743	7895	7743	ID=Msa1432790-mRNA-1:cds;Parent=Msa1432790-mRNA-1
tig0027178	CDS	7575	7625	7575	ID=Msa1432790-mRNA-1:cds;Parent=Msa1432790-mRNA-1

Gene Sequence	>Msa1432790 ATGGCACCTCCTTCATCAGACCTAAGGAAGATTGGCTTAGAAGGGTTTGCTTTAATAGACAAGTTTTATGGTCCAACAAGAAGGGTCAGCATGCAAGATCGTGCTTCTGGGGTTAGCAAGGATGGAACTGTTTACTTTGTTGATAGATCGAATAAAAAAAGCTCGAAGGCATGTGATTATATTTCAAATCAAAGTCTTCTGTAG
Protein sequence	>Msa1432790 MAPPSSDLRKIGLEGFALIDKFYGPTRRVSMQDRASGVSKDGTVYFVDRSNKKSSKACDYISNQSLL*