AlfalfaGEDB | Msa0983540

M. sativa cultivar zhongmu-4 / Msa0983540

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0983540	KEH16865.1	99.298	285	2	0	1	285	14	298	0.0	579

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0983540	sp\|P93286\|CCMFC_ARATH	84.462	251	31	4	1	247	14	260	2.52e-120	354

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0983540	A0A072TTM0	99.298	285	2	0	1	285	14	298	0.0	579

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026430	Msa0983540	-0.820144	8.012428e-53	-8.615850e-47
Msa0065950	Msa0983540	-0.802108	6.559664e-49	-8.615850e-47
Msa0069500	Msa0983540	0.817093	3.942519e-52	-8.615850e-47
Msa0159770	Msa0983540	-0.807950	3.934488e-50	-8.615850e-47
Msa0220440	Msa0983540	-0.830583	2.706342e-55	-8.615850e-47
Msa0249100	Msa0983540	-0.800394	1.471004e-48	-8.615850e-47
Msa0253200	Msa0983540	-0.812747	3.628865e-51	-8.615850e-47
Msa0261720	Msa0983540	-0.818483	1.914409e-52	-8.615850e-47
Msa0271530	Msa0983540	-0.805634	1.214473e-49	-8.615850e-47
Msa0292030	Msa0983540	-0.812688	3.737561e-51	-8.615850e-47

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0983540	MtrunA17_MTg0491351	100.000	285	0	1	285	14	298	0.0	577
Msa0983540	MtrunA17_Chr6g0457311	99.197	249	2	1	249	14	262	0.0	506
Msa0983540	MtrunA17_Chr5g0421701	100.000	94	0	1	94	14	107	3.78e-60	186

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0983540	ATMG00180.1	86.056	251	27	4	1	247	14	260	1.22e-124	363
Msa0983540	AT2G07815.1	92.063	63	5	0	1	63	186	248	1.99e-31	118

Showing 1 to 2 of 2 entries

Previous1Next

Find 98 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGGAGGCGTGGGCCAC+AGG	0.457252	6_4:-26629108	None:intergenic
AAATTCATACGCTCCATGGA+CGG	0.604092	6_4:+26628490	Msa0983540:CDS
AACAACGAAATGACAAGATG+GGG	0.646716	6_4:+26628809	Msa0983540:CDS
AACGGGAACGAAACGAAATG+AGG	0.592429	6_4:-26628605	None:intergenic
AAGATGAATATTTCACATTT+TGG	0.158170	6_4:+26629027	Msa0983540:CDS
AAGCACCACCCGACGAAGGG+GGG	0.538997	6_4:-26628894	None:intergenic
AAGGGTGCTGCCGTGCCACG+AGG	0.653393	6_4:-26628352	None:intergenic
AATAGGAATTATAGTCCCAT+TGG	0.486797	6_4:-26628425	None:intergenic
AATGACAAGATGGGGTGCTC+CGG	0.443575	6_4:+26628817	Msa0983540:CDS
AATGTAGATAGACCAAAAGA+GGG	0.661451	6_4:-26628462	None:intergenic

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACGAACCATTTCAATAGTAA+GGG	-	chr6_4:26628373-26628392	None:intergenic	30.0%
TTATAGTCCCATTGGAAAAA+GGG	-	chr6_4:26628420-26628439	None:intergenic	30.0%
ATTATAGTCCCATTGGAAAA+AGG	-	chr6_4:26628421-26628440	None:intergenic	30.0%
AATAGGAATTATAGTCCCAT+TGG	-	chr6_4:26628428-26628447	None:intergenic	30.0%
AATGTAGATAGACCAAAAGA+GGG	-	chr6_4:26628465-26628484	None:intergenic	30.0%
ATAAGAAGGAAATGAAGAAC+GGG	-	chr6_4:26628625-26628644	None:intergenic	30.0%
GATAAGAAGGAAATGAAGAA+CGG	-	chr6_4:26628626-26628645	None:intergenic	30.0%
ACGAACCATTTCAATAGTAA+GGG	-	chr6_4:26628373-26628392	None:intergenic	30.0%
TTATAGTCCCATTGGAAAAA+GGG	-	chr6_4:26628420-26628439	None:intergenic	30.0%
ATTATAGTCCCATTGGAAAA+AGG	-	chr6_4:26628421-26628440	None:intergenic	30.0%

Showing 1 to 10 of 252 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	26628343	26629200	26628343	ID=Msa0983540;Name=Msa0983540
chr6_4	mRNA	26628343	26629200	26628343	ID=Msa0983540-mRNA-1;Parent=Msa0983540;Name=Msa0983540-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|285
chr6_4	exon	26628343	26629200	26628343	ID=Msa0983540-mRNA-1:exon:7524;Parent=Msa0983540-mRNA-1
chr6_4	CDS	26628343	26629200	26628343	ID=Msa0983540-mRNA-1:cds;Parent=Msa0983540-mRNA-1

Gene Sequence

>Msa0983540

ATGGTCGTGCCTCGTGGCACGGCAGCACCCTTACTATTGAAATGGTTCGTCAGTAGAGATGTTCCCACAGGTGCCCCTTTTTCCAATGGGACTATAATTCCTATTCTTATCCCTTCATTCCCTCTTTTGGTCTATCTACATTCCAGGAAATTCATACGCTCCATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCTATTCTATTACCAGACATAATTGGGAGAAGCTCATCCGAAACTAGAGCTGGAAACGCCTCATTTCGTTTCGTTCCCGTTCTTCATTTCCTTCTTATCGAATCCAAGGGGGACTTCTCATATTTAGAATCTTTCTGCGGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCGATAGGTCAGCAAAGCGTGAGCGGGCGCGGAGAAGGATACACCAAAGACTTAGGCCTAACCCTAACGGGAATGAGCAACAACGAAATGACAAGATGGGGTGCTCCGGGCACCCCCATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGTCCCCCCTTCGTCGGGTGGTGCTTGTGTGGGGGGTGTGCCACCTGAACCTGAAATCGGGCTTGAAGCTCTCGCCTTACCAACGAGCCGACAGCTGATGGCTGTTGGTCACGACTACCACCAAAAAGCTCCAATGAAGATGAATATTTCACATTTTGGAGTGTGCATCTGTATGTTGGGTGTTCTTCTGTCGTGCGACCCGGCGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTCGGGGCGGGCGGCGTGAACTCTGACTCGATCCGGGTATTCAATCCCGCCGCTGAGATGCTCAGTTGA

Protein sequence

>Msa0983540

MVVPRGTAAPLLLKWFVSRDVPTGAPFSNGTIIPILIPSFPLLVYLHSRKFIRSMDGAKSGVLVRASRPILLPDIIGRSSSETRAGNASFRFVPVLHFLLIESKGDFSYLESFCGVLCLLFFRTLFSLPRDRSAKRERARRRIHQRLRPNPNGNEQQRNDKMGCSGHPHLERRVEGFGPVAFPVPPSSGGACVGGVPPEPEIGLEALALPTSRQLMAVGHDYHQKAPMKMNISHFGVCICMLGVLLSCDPAAYVRPVAHASYLFGAGGVNSDSIRVFNPAAEMLS*