Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944900 | A0A396GWN7 | 95.455 | 176 | 8 | 0 | 31 | 206 | 6 | 181 | 8.56e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021210 | Msa0944900 | -0.802003 | 6.893649e-49 | -8.615850e-47 |
| Msa0034970 | Msa0944900 | -0.810205 | 1.294057e-50 | -8.615850e-47 |
| Msa0069500 | Msa0944900 | 0.862815 | 3.878919e-64 | -8.615850e-47 |
| Msa0069510 | Msa0944900 | 0.804147 | 2.483876e-49 | -8.615850e-47 |
| Msa0089820 | Msa0944900 | -0.800367 | 1.489843e-48 | -8.615850e-47 |
| Msa0114430 | Msa0944900 | -0.805085 | 1.582906e-49 | -8.615850e-47 |
| Msa0682680 | Msa0944900 | -0.815411 | 9.370991e-52 | -8.615850e-47 |
| Msa0697990 | Msa0944900 | 0.847617 | 1.032312e-59 | -8.615850e-47 |
| Msa0721280 | Msa0944900 | -0.822335 | 2.502390e-53 | -8.615850e-47 |
| Msa0229380 | Msa0944900 | -0.809071 | 2.267790e-50 | -8.615850e-47 |
| Msa0253200 | Msa0944900 | -0.805337 | 1.401573e-49 | -8.615850e-47 |
| Msa0261720 | Msa0944900 | -0.830058 | 3.636807e-55 | -8.615850e-47 |
| Msa0292030 | Msa0944900 | -0.806030 | 1.002704e-49 | -8.615850e-47 |
| Msa0849030 | Msa0944900 | -0.804261 | 2.351160e-49 | -8.615850e-47 |
| Msa0890550 | Msa0944900 | -0.803993 | 2.674124e-49 | -8.615850e-47 |
| Msa0908830 | Msa0944900 | 0.872949 | 2.145977e-67 | -8.615850e-47 |
| Msa0908840 | Msa0944900 | 0.891508 | 3.725027e-74 | -8.615850e-47 |
| Msa0908850 | Msa0944900 | 0.907079 | 7.463784e-81 | -8.615850e-47 |
| Msa0908870 | Msa0944900 | 0.965607 | 7.985429e-125 | -8.615850e-47 |
| Msa0908920 | Msa0944900 | 0.857755 | 1.314950e-62 | -8.615850e-47 |
| Msa0908930 | Msa0944900 | 0.881730 | 1.882292e-70 | -8.615850e-47 |
| Msa0919990 | Msa0944900 | 0.812222 | 4.725694e-51 | -8.615850e-47 |
| Msa0920000 | Msa0944900 | 0.831045 | 2.085207e-55 | -8.615850e-47 |
| Msa0920060 | Msa0944900 | 0.865672 | 4.983872e-65 | -8.615850e-47 |
| Msa0944900 | Msa0944920 | 0.911788 | 4.088477e-83 | -8.615850e-47 |
| Msa0944900 | Msa0944930 | 0.882152 | 1.324129e-70 | -8.615850e-47 |
| Msa0944900 | Msa0944940 | 0.883670 | 3.687177e-71 | -8.615850e-47 |
| Msa0944900 | Msa0944990 | 0.891938 | 2.514160e-74 | -8.615850e-47 |
| Msa0944900 | Msa0962840 | -0.805249 | 1.462402e-49 | -8.615850e-47 |
| Msa0944900 | Msa0983170 | 0.879011 | 1.764389e-69 | -8.615850e-47 |
| Msa0944900 | Msa0983180 | 0.891250 | 4.716491e-74 | -8.615850e-47 |
| Msa0944900 | Msa0983190 | 0.919133 | 6.583819e-87 | -8.615850e-47 |
| Msa0944900 | Msa0983210 | 0.962231 | 1.243611e-120 | -8.615850e-47 |
| Msa0944900 | Msa0983220 | 0.857843 | 1.237767e-62 | -8.615850e-47 |
| Msa0944900 | Msa0983260 | 0.891636 | 3.313403e-74 | -8.615850e-47 |
| Msa0944900 | Msa0983300 | 0.880204 | 6.652820e-70 | -8.615850e-47 |
| Msa0944900 | Msa0983310 | 0.818009 | 2.451052e-52 | -8.615850e-47 |
| Msa0944900 | Msa0983320 | 0.877266 | 7.211376e-69 | -8.615850e-47 |
| Msa0944900 | Msa0983350 | 0.893343 | 6.865956e-75 | -8.615850e-47 |
| Msa0944900 | Msa0983360 | 0.815477 | 9.060027e-52 | -8.615850e-47 |
| Msa0944900 | Msa0983460 | 0.898024 | 7.953014e-77 | -8.615850e-47 |
| Msa0944900 | Msa0983490 | 0.865426 | 5.955054e-65 | -8.615850e-47 |
| Msa0944900 | Msa0983500 | 0.978043 | 5.254356e-145 | -8.615850e-47 |
| Msa0944900 | Msa0983520 | 0.904577 | 1.061680e-79 | -8.615850e-47 |
| Msa0944900 | Msa0983530 | 0.883330 | 4.914800e-71 | -8.615850e-47 |
| Msa0944900 | Msa0983540 | 0.875199 | 3.719170e-68 | -8.615850e-47 |
| Msa0944900 | Msa0983550 | 0.809241 | 2.085162e-50 | -8.615850e-47 |
| Msa0944900 | Msa1109680 | -0.804097 | 2.543364e-49 | -8.615850e-47 |
| Msa0944900 | Msa1190920 | -0.800117 | 1.675358e-48 | -8.615850e-47 |
| Msa0944900 | Msa1210020 | -0.817110 | 3.907950e-52 | -8.615850e-47 |
| Msa0944900 | Msa1228620 | 0.857693 | 1.371639e-62 | -8.615850e-47 |
| Msa0944900 | Msa1254730 | -0.812650 | 3.809967e-51 | -8.615850e-47 |
| Msa0944900 | Msa1298510 | -0.819506 | 1.120914e-52 | -8.615850e-47 |
| Msa0944900 | Msa1357890 | -0.826379 | 2.802437e-54 | -8.615850e-47 |
| Msa0944900 | Msa1391970 | 0.889668 | 1.971416e-73 | -8.615850e-47 |
| Msa0944900 | Msa1392010 | 0.876898 | 9.683009e-69 | -8.615850e-47 |
| Msa0944900 | Msa1392020 | 0.804064 | 2.584760e-49 | -8.615850e-47 |
| Msa0944900 | Msa1392030 | 0.877076 | 8.395556e-69 | -8.615850e-47 |
| Msa0944900 | Msa1392120 | 0.889084 | 3.324111e-73 | -8.615850e-47 |
| Msa0944900 | Msa1392160 | 0.918334 | 1.770971e-86 | -8.615850e-47 |
| Msa0944900 | Msa1398090 | -0.826810 | 2.211796e-54 | -8.615850e-47 |
| Msa0944900 | Msa1453870 | 0.800248 | 1.575417e-48 | -8.615850e-47 |
| Msa0944900 | Msa1466540 | -0.821181 | 4.628165e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944900 | MtrunA17_MTg0491251 | 98.544 | 206 | 3 | 0 | 1 | 206 | 8 | 213 | 9.43e-147 | 407 |
| Msa0944900 | MtrunA17_Chr7g0231341 | 95.455 | 176 | 8 | 0 | 31 | 206 | 6 | 181 | 1.65e-120 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTACTCGGCTCGGGTTC+GGG | 0.146792 | 6_3:+22369712 | Msa0944900:CDS |
| AAGCCGACGCCGACCCATTT+TGG | 0.210676 | 6_3:-22369896 | None:intergenic |
| CTCTTTGGATGTATCCTTCT+GGG | 0.227156 | 6_3:+22369796 | Msa0944900:CDS |
| CCTCTTTGGATGTATCCTTC+TGG | 0.235353 | 6_3:+22369795 | Msa0944900:CDS |
| AGACTTCGTTGCAAATAAAT+TGG | 0.238736 | 6_3:+22370016 | Msa0944900:CDS |
| CCCGCCGCTCCTATCCAAAA+TGG | 0.239934 | 6_3:+22369882 | Msa0944900:CDS |
| CTCTTTACTCGGCTCGGGTT+CGG | 0.247183 | 6_3:+22369711 | Msa0944900:CDS |
| TCAAAGAATGTCTAATTCTT+TGG | 0.276750 | 6_3:+22369578 | None:intergenic |
| TCAATAGAAATGCCAAAATA+AGG | 0.312304 | 6_3:-22369626 | None:intergenic |
| CGTAGCGCTTGCTCATAAAT+TGG | 0.318064 | 6_3:-22370062 | None:intergenic |
| AACCTCCTCTTTACTCGGCT+CGG | 0.370554 | 6_3:+22369705 | Msa0944900:CDS |
| ATTGGACCCTGCGGCTGCCC+CGG | 0.373068 | 6_3:-22370044 | None:intergenic |
| GATAGGAGCGGCGGGTCCGC+CGG | 0.375170 | 6_3:-22369874 | None:intergenic |
| GTTTAGAGACCTGCTGAAAA+AGG | 0.379768 | 6_3:-22369685 | None:intergenic |
| TATCCTTCTGGGGCTGATGC+TGG | 0.380202 | 6_3:+22369807 | Msa0944900:CDS |
| AGCGGCGGGTCCGCCGGGGC+GGG | 0.390016 | 6_3:-22369868 | None:intergenic |
| TATGGTTTCGCGGCCGGAGC+TGG | 0.394590 | 6_3:-22369939 | None:intergenic |
| GGGAAGGCTGATGCTGCTCT+TGG | 0.402499 | 6_3:-22369848 | None:intergenic |
| GCGGGTCCGCCGGGGCGGGA+AGG | 0.403262 | 6_3:-22369864 | None:intergenic |
| CTTTACTCGGCTCGGGTTCG+GGG | 0.407970 | 6_3:+22369713 | Msa0944900:CDS |
| GTGCCGAGGAAATCCCTCTT+TGG | 0.408347 | 6_3:+22369781 | Msa0944900:CDS |
| TTGGACCCTGCGGCTGCCCC+GGG | 0.438206 | 6_3:-22370043 | None:intergenic |
| GGAAGACCCGGGGCAGCCGC+AGG | 0.439885 | 6_3:+22370037 | Msa0944900:CDS |
| CCACTTTACTTTCAAAAGAT+CGG | 0.450190 | 6_3:-22369661 | None:intergenic |
| ACCTCCTCTTTACTCGGCTC+GGG | 0.456204 | 6_3:+22369706 | Msa0944900:CDS |
| TAGGAGCGGCGGGTCCGCCG+GGG | 0.472146 | 6_3:-22369872 | None:intergenic |
| TTCCGTGGAGCAGCCAGCTC+CGG | 0.472407 | 6_3:+22369926 | Msa0944900:CDS |
| GGCCGGAGCTGGCTGCTCCA+CGG | 0.474217 | 6_3:-22369928 | None:intergenic |
| CTCTAAACCTCCTCTTTACT+CGG | 0.475617 | 6_3:+22369700 | Msa0944900:CDS |
| TGCAAATAAATTGGAAGACC+CGG | 0.488016 | 6_3:+22370025 | Msa0944900:CDS |
| CAGCATCAGCCTTCCCGCCC+CGG | 0.489074 | 6_3:+22369855 | Msa0944900:CDS |
| CCGCCGCTCCTATCCAAAAT+GGG | 0.493631 | 6_3:+22369883 | Msa0944900:CDS |
| GGACGAACTTCAGCGCTGGC+TGG | 0.506906 | 6_3:+22370127 | Msa0944900:CDS |
| AGCGCTGGCTGGTTTCACTA+AGG | 0.509513 | 6_3:+22370138 | Msa0944900:CDS |
| AATACGATTGCCAAGGCGGC+CGG | 0.515316 | 6_3:-22369738 | None:intergenic |
| AGCTGAAGGAGGGCTATGTA+TGG | 0.518841 | 6_3:-22369957 | None:intergenic |
| CGAACCCGAGCCGAGTAAAG+AGG | 0.520061 | 6_3:-22369710 | None:intergenic |
| GCGCTGGCTGGTTTCACTAA+GGG | 0.521276 | 6_3:+22370139 | Msa0944900:CDS |
| GCTATGTATGGTTTCGCGGC+CGG | 0.522221 | 6_3:-22369945 | None:intergenic |
| GAGGGCTATGTATGGTTTCG+CGG | 0.534222 | 6_3:-22369949 | None:intergenic |
| AGCAAGCGCTACGCCTGGTA+TGG | 0.535586 | 6_3:+22370072 | Msa0944900:CDS |
| TTTACTCGGCTCGGGTTCGG+GGG | 0.543290 | 6_3:+22369714 | Msa0944900:CDS |
| TTATGAGCAAGCGCTACGCC+TGG | 0.557111 | 6_3:+22370067 | Msa0944900:CDS |
| CGCTCCTATCCAAAATGGGT+CGG | 0.568858 | 6_3:+22369887 | Msa0944900:CDS |
| GATCGATGGCAGTACTAACC+AGG | 0.569954 | 6_3:+22370106 | Msa0944900:CDS |
| GCAAATAAATTGGAAGACCC+GGG | 0.573068 | 6_3:+22370026 | Msa0944900:CDS |
| ATAGCCCTCCTTCAGCTAGA+GGG | 0.580354 | 6_3:+22369963 | Msa0944900:CDS |
| ACCAGGACGAACTTCAGCGC+TGG | 0.584629 | 6_3:+22370123 | Msa0944900:CDS |
| GAAGACCCGGGGCAGCCGCA+GGG | 0.585751 | 6_3:+22370038 | Msa0944900:CDS |
| GCCAGCGCTGAAGTTCGTCC+TGG | 0.586980 | 6_3:-22370124 | None:intergenic |
| TCTTTGGATGTATCCTTCTG+GGG | 0.587601 | 6_3:+22369797 | Msa0944900:CDS |
| TGGCTGCTCCACGGAACTAG+TGG | 0.588921 | 6_3:-22369919 | None:intergenic |
| AAGAAATACGATTGCCAAGG+CGG | 0.590719 | 6_3:-22369742 | None:intergenic |
| CAAAAGAAATACGATTGCCA+AGG | 0.602322 | 6_3:-22369745 | None:intergenic |
| AAAATGGATTTGTATTGTCG+GGG | 0.604607 | 6_3:-22370167 | None:intergenic |
| TCTCGAGTTCATACCATACC+AGG | 0.605945 | 6_3:-22370085 | None:intergenic |
| TGGTATGAACTCGAGATCGA+TGG | 0.622194 | 6_3:+22370092 | Msa0944900:CDS |
| CAGAAGGATACATCCAAAGA+GGG | 0.626664 | 6_3:-22369794 | None:intergenic |
| GCGAGCACTATTCAGTGCCG+AGG | 0.627117 | 6_3:+22369767 | Msa0944900:CDS |
| TAGCCCTCCTTCAGCTAGAG+GGG | 0.628752 | 6_3:+22369964 | Msa0944900:CDS |
| CATCCAAAGAGGGATTTCCT+CGG | 0.631260 | 6_3:-22369784 | None:intergenic |
| TATCCAAAATGGGTCGGCGT+CGG | 0.631571 | 6_3:+22369893 | Msa0944900:CDS |
| GAGCCAGCATCAGCCCCAGA+AGG | 0.632838 | 6_3:-22369810 | None:intergenic |
| CCAGAAGGATACATCCAAAG+AGG | 0.635005 | 6_3:-22369795 | None:intergenic |
| TGCTCATAAATTGGACCCTG+CGG | 0.637696 | 6_3:-22370053 | None:intergenic |
| CATAGCCCTCCTTCAGCTAG+AGG | 0.642446 | 6_3:+22369962 | Msa0944900:CDS |
| AGCCCTCCTTCAGCTAGAGG+GGG | 0.644919 | 6_3:+22369965 | Msa0944900:CDS |
| AAATGGATTTGTATTGTCGG+GGG | 0.651927 | 6_3:-22370166 | None:intergenic |
| ACCCGAGCCGAGTAAAGAGG+AGG | 0.667486 | 6_3:-22369707 | None:intergenic |
| CAAATAAATTGGAAGACCCG+GGG | 0.684347 | 6_3:+22370027 | Msa0944900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTCTTCCTTATTT+TGG | + | chr6_3:22369614-22369633 | Msa0944900:CDS | 20.0% |
| ! | TCAATAGAAATGCCAAAATA+AGG | - | chr6_3:22369629-22369648 | None:intergenic | 25.0% |
| !! | AAAAATGGATTTGTATTGTC+GGG | - | chr6_3:22370171-22370190 | None:intergenic | 25.0% |
| !! | CAAAAATGGATTTGTATTGT+CGG | - | chr6_3:22370172-22370191 | None:intergenic | 25.0% |
| CCACTTTACTTTCAAAAGAT+CGG | - | chr6_3:22369664-22369683 | None:intergenic | 30.0% | |
| AGACTTCGTTGCAAATAAAT+TGG | + | chr6_3:22370016-22370035 | Msa0944900:CDS | 30.0% | |
| ! | AAAATGGATTTGTATTGTCG+GGG | - | chr6_3:22370170-22370189 | None:intergenic | 30.0% |
| ! | CGACAATACAAATCCATTTT+TGG | + | chr6_3:22370170-22370189 | Msa0944900:CDS | 30.0% |
| !! | CCGATCTTTTGAAAGTAAAG+TGG | + | chr6_3:22369661-22369680 | Msa0944900:CDS | 35.0% |
| CAAAAGAAATACGATTGCCA+AGG | - | chr6_3:22369748-22369767 | None:intergenic | 35.0% | |
| TGCAAATAAATTGGAAGACC+CGG | + | chr6_3:22370025-22370044 | Msa0944900:CDS | 35.0% | |
| ! | AAATGGATTTGTATTGTCGG+GGG | - | chr6_3:22370169-22370188 | None:intergenic | 35.0% |
| !!! | TAAAGTGGACCTTTTTCAGC+AGG | + | chr6_3:22369676-22369695 | Msa0944900:CDS | 40.0% |
| GTTTAGAGACCTGCTGAAAA+AGG | - | chr6_3:22369688-22369707 | None:intergenic | 40.0% | |
| CTCTAAACCTCCTCTTTACT+CGG | + | chr6_3:22369700-22369719 | Msa0944900:CDS | 40.0% | |
| AAGAAATACGATTGCCAAGG+CGG | - | chr6_3:22369745-22369764 | None:intergenic | 40.0% | |
| CAGAAGGATACATCCAAAGA+GGG | - | chr6_3:22369797-22369816 | None:intergenic | 40.0% | |
| CTCTTTGGATGTATCCTTCT+GGG | + | chr6_3:22369796-22369815 | Msa0944900:CDS | 40.0% | |
| TCTTTGGATGTATCCTTCTG+GGG | + | chr6_3:22369797-22369816 | Msa0944900:CDS | 40.0% | |
| GCAAATAAATTGGAAGACCC+GGG | + | chr6_3:22370026-22370045 | Msa0944900:CDS | 40.0% | |
| CAAATAAATTGGAAGACCCG+GGG | + | chr6_3:22370027-22370046 | Msa0944900:CDS | 40.0% | |
| !!! | AATCCATTTTTGGCTTCTCC+CGG | + | chr6_3:22370180-22370199 | Msa0944900:CDS | 40.0% |
| CATCCAAAGAGGGATTTCCT+CGG | - | chr6_3:22369787-22369806 | None:intergenic | 45.0% | |
| CCAGAAGGATACATCCAAAG+AGG | - | chr6_3:22369798-22369817 | None:intergenic | 45.0% | |
| CCTCTTTGGATGTATCCTTC+TGG | + | chr6_3:22369795-22369814 | Msa0944900:CDS | 45.0% | |
| TGCTCATAAATTGGACCCTG+CGG | - | chr6_3:22370056-22370075 | None:intergenic | 45.0% | |
| CGTAGCGCTTGCTCATAAAT+TGG | - | chr6_3:22370065-22370084 | None:intergenic | 45.0% | |
| TCTCGAGTTCATACCATACC+AGG | - | chr6_3:22370088-22370107 | None:intergenic | 45.0% | |
| TGGTATGAACTCGAGATCGA+TGG | + | chr6_3:22370092-22370111 | Msa0944900:CDS | 45.0% | |
| !!! | ATCCATTTTTGGCTTCTCCC+GGG | + | chr6_3:22370181-22370200 | Msa0944900:CDS | 45.0% |
| AACCTCCTCTTTACTCGGCT+CGG | + | chr6_3:22369705-22369724 | Msa0944900:CDS | 50.0% | |
| ! | CGACCCATTTTGGATAGGAG+CGG | - | chr6_3:22369889-22369908 | None:intergenic | 50.0% |
| CGCTCCTATCCAAAATGGGT+CGG | + | chr6_3:22369887-22369906 | Msa0944900:CDS | 50.0% | |
| TATCCAAAATGGGTCGGCGT+CGG | + | chr6_3:22369893-22369912 | Msa0944900:CDS | 50.0% | |
| GAGGGCTATGTATGGTTTCG+CGG | - | chr6_3:22369952-22369971 | None:intergenic | 50.0% | |
| AGCTGAAGGAGGGCTATGTA+TGG | - | chr6_3:22369960-22369979 | None:intergenic | 50.0% | |
| ATAGCCCTCCTTCAGCTAGA+GGG | + | chr6_3:22369963-22369982 | Msa0944900:CDS | 50.0% | |
| GATCGATGGCAGTACTAACC+AGG | + | chr6_3:22370106-22370125 | Msa0944900:CDS | 50.0% | |
| !!! | TCCATTTTTGGCTTCTCCCG+GGG | + | chr6_3:22370182-22370201 | Msa0944900:CDS | 50.0% |
| ACCTCCTCTTTACTCGGCTC+GGG | + | chr6_3:22369706-22369725 | Msa0944900:CDS | 55.0% | |
| !! | CTCTTTACTCGGCTCGGGTT+CGG | + | chr6_3:22369711-22369730 | Msa0944900:CDS | 55.0% |
| !! | TCTTTACTCGGCTCGGGTTC+GGG | + | chr6_3:22369712-22369731 | Msa0944900:CDS | 55.0% |
| AATACGATTGCCAAGGCGGC+CGG | - | chr6_3:22369741-22369760 | None:intergenic | 55.0% | |
| GTGCCGAGGAAATCCCTCTT+TGG | + | chr6_3:22369781-22369800 | Msa0944900:CDS | 55.0% | |
| !! | TATCCTTCTGGGGCTGATGC+TGG | + | chr6_3:22369807-22369826 | Msa0944900:CDS | 55.0% |
| ! | CCATTTTGGATAGGAGCGGC+GGG | - | chr6_3:22369885-22369904 | None:intergenic | 55.0% |
| ! | CCCATTTTGGATAGGAGCGG+CGG | - | chr6_3:22369886-22369905 | None:intergenic | 55.0% |
| CCGCCGCTCCTATCCAAAAT+GGG | + | chr6_3:22369883-22369902 | Msa0944900:CDS | 55.0% | |
| ! | GACGCCGACCCATTTTGGAT+AGG | - | chr6_3:22369894-22369913 | None:intergenic | 55.0% |
| GCTATGTATGGTTTCGCGGC+CGG | - | chr6_3:22369948-22369967 | None:intergenic | 55.0% | |
| CATAGCCCTCCTTCAGCTAG+AGG | + | chr6_3:22369962-22369981 | Msa0944900:CDS | 55.0% | |
| TAGCCCTCCTTCAGCTAGAG+GGG | + | chr6_3:22369964-22369983 | Msa0944900:CDS | 55.0% | |
| TTATGAGCAAGCGCTACGCC+TGG | + | chr6_3:22370067-22370086 | Msa0944900:CDS | 55.0% | |
| !! | AGCGCTGGCTGGTTTCACTA+AGG | + | chr6_3:22370138-22370157 | Msa0944900:CDS | 55.0% |
| !! | GCGCTGGCTGGTTTCACTAA+GGG | + | chr6_3:22370139-22370158 | Msa0944900:CDS | 55.0% |
| !!! | CCATTTTTGGCTTCTCCCGG+GGG | + | chr6_3:22370183-22370202 | Msa0944900:CDS | 55.0% |
| !!! | CATTTTTGGCTTCTCCCGGG+GGG | + | chr6_3:22370184-22370203 | Msa0944900:CDS | 55.0% |
| ACCCGAGCCGAGTAAAGAGG+AGG | - | chr6_3:22369710-22369729 | None:intergenic | 60.0% | |
| CGAACCCGAGCCGAGTAAAG+AGG | - | chr6_3:22369713-22369732 | None:intergenic | 60.0% | |
| !! | CTTTACTCGGCTCGGGTTCG+GGG | + | chr6_3:22369713-22369732 | Msa0944900:CDS | 60.0% |
| !! | TTTACTCGGCTCGGGTTCGG+GGG | + | chr6_3:22369714-22369733 | Msa0944900:CDS | 60.0% |
| GCGAGCACTATTCAGTGCCG+AGG | + | chr6_3:22369767-22369786 | Msa0944900:CDS | 60.0% | |
| GGGAAGGCTGATGCTGCTCT+TGG | - | chr6_3:22369851-22369870 | None:intergenic | 60.0% | |
| CCCGCCGCTCCTATCCAAAA+TGG | + | chr6_3:22369882-22369901 | Msa0944900:CDS | 60.0% | |
| ! | AAGCCGACGCCGACCCATTT+TGG | - | chr6_3:22369899-22369918 | None:intergenic | 60.0% |
| ! | GTCGGCTTCCACTAGTTCCG+TGG | + | chr6_3:22369911-22369930 | Msa0944900:CDS | 60.0% |
| TGGCTGCTCCACGGAACTAG+TGG | - | chr6_3:22369922-22369941 | None:intergenic | 60.0% | |
| AGCCCTCCTTCAGCTAGAGG+GGG | + | chr6_3:22369965-22369984 | Msa0944900:CDS | 60.0% | |
| CTCCCCCTCTAGCTGAAGGA+GGG | - | chr6_3:22369970-22369989 | None:intergenic | 60.0% | |
| TCCTTCAGCTAGAGGGGGAG+CGG | + | chr6_3:22369970-22369989 | Msa0944900:CDS | 60.0% | |
| AGCAAGCGCTACGCCTGGTA+TGG | + | chr6_3:22370072-22370091 | Msa0944900:CDS | 60.0% | |
| ACCAGGACGAACTTCAGCGC+TGG | + | chr6_3:22370123-22370142 | Msa0944900:CDS | 60.0% | |
| CCCCCGGGAGAAGCCAAAAA+TGG | - | chr6_3:22370186-22370205 | None:intergenic | 60.0% | |
| GAGCCAGCATCAGCCCCAGA+AGG | - | chr6_3:22369813-22369832 | None:intergenic | 65.0% | |
| TTCCGTGGAGCAGCCAGCTC+CGG | + | chr6_3:22369926-22369945 | Msa0944900:CDS | 65.0% | |
| TATGGTTTCGCGGCCGGAGC+TGG | - | chr6_3:22369942-22369961 | None:intergenic | 65.0% | |
| GCTCCCCCTCTAGCTGAAGG+AGG | - | chr6_3:22369971-22369990 | None:intergenic | 65.0% | |
| TCCGCTCCCCCTCTAGCTGA+AGG | - | chr6_3:22369974-22369993 | None:intergenic | 65.0% | |
| ! | GCCAGCGCTGAAGTTCGTCC+TGG | - | chr6_3:22370127-22370146 | None:intergenic | 65.0% |
| !! | GGACGAACTTCAGCGCTGGC+TGG | + | chr6_3:22370127-22370146 | Msa0944900:CDS | 65.0% |
| CAGCATCAGCCTTCCCGCCC+CGG | + | chr6_3:22369855-22369874 | Msa0944900:CDS | 70.0% | |
| ATTGGACCCTGCGGCTGCCC+CGG | - | chr6_3:22370047-22370066 | None:intergenic | 70.0% | |
| !! | TCGGCTCGGGTTCGGGGGTC+CGG | + | chr6_3:22369719-22369738 | Msa0944900:CDS | 75.0% |
| CATCAGCCTTCCCGCCCCGG+CGG | + | chr6_3:22369858-22369877 | Msa0944900:CDS | 75.0% | |
| ATAGGAGCGGCGGGTCCGCC+GGG | - | chr6_3:22369876-22369895 | None:intergenic | 75.0% | |
| GATAGGAGCGGCGGGTCCGC+CGG | - | chr6_3:22369877-22369896 | None:intergenic | 75.0% | |
| GGCCGGAGCTGGCTGCTCCA+CGG | - | chr6_3:22369931-22369950 | None:intergenic | 75.0% | |
| GAAGACCCGGGGCAGCCGCA+GGG | + | chr6_3:22370038-22370057 | Msa0944900:CDS | 75.0% | |
| TTGGACCCTGCGGCTGCCCC+GGG | - | chr6_3:22370046-22370065 | None:intergenic | 75.0% | |
| ! | GTTCGGGGGTCCGGCCGCCT+TGG | + | chr6_3:22369728-22369747 | Msa0944900:CDS | 80.0% |
| ! | TAGGAGCGGCGGGTCCGCCG+GGG | - | chr6_3:22369875-22369894 | None:intergenic | 80.0% |
| ! | GGAAGACCCGGGGCAGCCGC+AGG | + | chr6_3:22370037-22370056 | Msa0944900:CDS | 80.0% |
| ! | GCGGGTCCGCCGGGGCGGGA+AGG | - | chr6_3:22369867-22369886 | None:intergenic | 90.0% |
| ! | AGCGGCGGGTCCGCCGGGGC+GGG | - | chr6_3:22369871-22369890 | None:intergenic | 90.0% |
| ! | GAGCGGCGGGTCCGCCGGGG+CGG | - | chr6_3:22369872-22369891 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 22369585 | 22370217 | 22369585 | ID=Msa0944900;Name=Msa0944900 |
| chr6_3 | mRNA | 22369585 | 22370217 | 22369585 | ID=Msa0944900-mRNA-1;Parent=Msa0944900;Name=Msa0944900-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|210 |
| chr6_3 | exon | 22369585 | 22370217 | 22369585 | ID=Msa0944900-mRNA-1:exon:6558;Parent=Msa0944900-mRNA-1 |
| chr6_3 | CDS | 22369585 | 22370217 | 22369585 | ID=Msa0944900-mRNA-1:cds;Parent=Msa0944900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
