AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032930 MtrunA17_Chr1g0191941 89.055 402 42 1 79 480 7 406 0.0 729
Msa0032930 MtrunA17_Chr7g0272711 53.961 467 201 6 25 480 22 485 2.79e-161 465
Msa0032930 MtrunA17_Chr2g0296331 46.908 469 232 4 28 479 16 484 2.16e-146 427
Msa0032930 MtrunA17_Chr4g0066981 47.537 467 221 4 28 479 23 480 1.23e-141 415
Msa0032930 MtrunA17_Chr1g0191951 94.872 78 4 0 1 78 1 78 3.78e-47 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032930 AT1G09020.1 48.884 493 232 4 1 480 1 486 2.77e-156 453

Find 131 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCCTCACTTGTTTGTT+TGG 0.213376 1_1:+60085834 Msa0032930:CDS
TGGCTCCTGTGTGGGATTCT+AGG 0.216648 1_1:+60088807 Msa0032930:CDS
GTTTAATGGTCACTTTCTTT+AGG 0.241162 1_1:+60091852 Msa0032930:three_prime_UTR
GTTCATATTTATATTAATTT+AGG 0.248545 1_1:-60085624 None:intergenic
CACTTGTTTGTTTGGCCTCA+TGG 0.250434 1_1:+60085842 Msa0032930:CDS
CACTTTCTTTAGGATGAAAT+TGG 0.252484 1_1:+60091862 Msa0032930:three_prime_UTR
ATACCAATTGTGGATGATTC+TGG 0.255262 1_1:+60090871 Msa0032930:CDS
CGTTGCAATTGGCTGTTTAT+TGG 0.259307 1_1:-60090640 None:intergenic
GTTCAATACCTTTGGGTAGA+TGG 0.263569 1_1:+60090598 Msa0032930:CDS
ATGCTTTCAGGAAGTATCTT+TGG 0.275765 1_1:+60088787 Msa0032930:intron
AACTCAAGTTTCTTGTTGTT+TGG 0.276317 1_1:-60085385 None:intergenic
AAGCGTTTCAAGAACGATTA+TGG 0.296514 1_1:+60090546 Msa0032930:CDS
ATGGAACGCTTTGCTAATTC+TGG 0.300906 1_1:+60091537 Msa0032930:CDS
ACCGATTGGTTCAATACCTT+TGG 0.309132 1_1:+60090590 Msa0032930:CDS
GCATTGAATTTGAGACAAAT+TGG 0.317046 1_1:+60091453 Msa0032930:CDS
TACTGCTTCTCATTTGCTTC+CGG 0.327253 1_1:+60088455 Msa0032930:CDS
TCTCATTTGCTTCCGGAGTC+TGG 0.337135 1_1:+60088462 Msa0032930:CDS
AACAAGTGAGGAATGGAAAA+AGG 0.342501 1_1:-60085827 None:intergenic
AAATTATTGTTGGGTTAGTT+AGG 0.347376 1_1:+60091799 Msa0032930:exon
GTTAGTTAGGAAAACTGTTT+TGG 0.352203 1_1:+60091812 Msa0032930:exon
ATTAAGAAATAAATTAATCT+TGG 0.356672 1_1:+60091929 Msa0032930:three_prime_UTR
CAACAAGAAACTTGAGTTAG+AGG 0.358273 1_1:+60085390 Msa0032930:five_prime_UTR
GGCATCCCATGTAACATATA+TGG 0.360054 1_1:-60087728 None:intergenic
CAGTAGCATGCATCCATATA+CGG 0.387731 1_1:+60085421 Msa0032930:five_prime_UTR
GAACGATTATGGTTCTTTGC+CGG 0.389922 1_1:+60090557 Msa0032930:CDS
CGCCACAGTGAACACTATTT+CGG 0.390725 1_1:+60087697 Msa0032930:CDS
TTTCTATGCGGTTCTTTCAC+AGG 0.392143 1_1:+60085878 Msa0032930:CDS
CCGATTGGTTCAATACCTTT+GGG 0.410101 1_1:+60090591 Msa0032930:CDS
GAGCAGCAGCCATTTATAAA+CGG 0.418064 1_1:+60087668 Msa0032930:CDS
AGCAGCAGCCATTTATAAAC+GGG 0.425365 1_1:+60087669 Msa0032930:CDS
CGAATTGAAGGCCGCCCGAC+TGG 0.426158 1_1:+60086334 Msa0032930:CDS
GCTGCAGGTAGAGGAGGAAA+TGG 0.428068 1_1:+60085770 Msa0032930:CDS
CCAATCGGTATTTGAAGAAC+CGG 0.430303 1_1:-60090576 None:intergenic
TTTGGCCTTAGCGTTGCAAT+TGG 0.432792 1_1:-60090651 None:intergenic
ATTGCATATTCTATATGAAC+AGG 0.444363 1_1:+60088623 Msa0032930:CDS
TCTAGGAAGTGCAAGTTTGT+TGG 0.444547 1_1:+60088824 Msa0032930:CDS
AATGTGGAACTGATAGTAAT+GGG 0.445752 1_1:+60090147 Msa0032930:CDS
GGTTCATCAGCTGCAGGTAG+AGG 0.446142 1_1:+60085761 Msa0032930:CDS
TGATGTGTTCAAATTATTGT+TGG 0.453571 1_1:+60091789 Msa0032930:CDS
TTCAATACCTTTGGGTAGAT+GGG 0.455387 1_1:+60090599 Msa0032930:CDS
TTATACTTCCAACGTGTTTG+AGG 0.461890 1_1:+60091493 Msa0032930:CDS
TTACCAATGTCTCGAATTGA+AGG 0.465371 1_1:+60086322 Msa0032930:CDS
GCGGTGAACCCGTTTATAAA+TGG 0.465452 1_1:-60087677 None:intergenic
GGGTAGATGGGCGCCAAAAG+TGG 0.478271 1_1:+60090611 Msa0032930:CDS
AAGTCCTTCATCAGTAAAAG+TGG 0.478439 1_1:-60090081 None:intergenic
GAACCAGAATCATCCACAAT+TGG 0.479679 1_1:-60090874 None:intergenic
TTCAGTGCTTGAATAATGTC+CGG 0.484827 1_1:-60088860 None:intergenic
AGAGCAAACTCTGGTGTCCT+AGG 0.487042 1_1:-60088390 None:intergenic
TCACAGTGATCTTACTGCAT+TGG 0.488595 1_1:+60090995 Msa0032930:intron
GATCCCTTGCACACTCCTGC+AGG 0.489091 1_1:-60091755 None:intergenic
TAATTTGAACACATCACCTA+TGG 0.489576 1_1:-60091782 None:intergenic
GTTGTTTGCTACTTGACTCC+AGG 0.490524 1_1:+60086364 Msa0032930:CDS
GGTAGATGGGCGCCAAAAGT+GGG 0.495369 1_1:+60090612 Msa0032930:CDS
CCAAATACCGTATGAAATCC+TGG 0.498485 1_1:-60086382 None:intergenic
AGTATCTTTGGCTCCTGTGT+GGG 0.498993 1_1:+60088799 Msa0032930:CDS
CGATCCATTGCATGTGGTGA+TGG 0.505024 1_1:+60091518 Msa0032930:CDS
CATTATTCAAGCACTGAAAG+AGG 0.510834 1_1:+60088865 Msa0032930:CDS
GATGTGTTCAAATTATTGTT+GGG 0.510954 1_1:+60091790 Msa0032930:CDS
ATATTTATATTAATTTAGGC+AGG 0.512186 1_1:-60085620 None:intergenic
GAGAGATACTAAAATTATCC+AGG 0.512926 1_1:-60091046 None:intergenic
CAAATTGGAAAATGTCCTTA+CGG 0.513581 1_1:+60091468 Msa0032930:CDS
CCGGTTCTTCAAATACCGAT+TGG 0.514318 1_1:+60090576 Msa0032930:CDS
GCAGCACTAAGAGAAGCATT+TGG 0.515122 1_1:-60090669 None:intergenic
GTAATGGGAAAGCATATCCT+TGG 0.515149 1_1:+60090162 Msa0032930:CDS
CAATGTGGAACTGATAGTAA+TGG 0.515165 1_1:+60090146 Msa0032930:CDS
TGGTGGTGAAGTCTGCCTGC+AGG 0.517145 1_1:+60091740 Msa0032930:CDS
CGTTCCATCACCACATGCAA+TGG 0.521140 1_1:-60091522 None:intergenic
AAAGTGGATCGATGACTCTC+CGG 0.522520 1_1:-60090065 None:intergenic
TTTGCTTCCGGAGTCTGGCA+AGG 0.526888 1_1:+60088467 Msa0032930:CDS
TGATTTGAGATTGAAATGTC+AGG 0.532626 1_1:+60085740 Msa0032930:exon
TTCTATGCGGTTCTTTCACA+GGG 0.532666 1_1:+60085879 Msa0032930:CDS
AGCTGCAGATGGGATCTACT+AGG 0.536186 1_1:-60087749 None:intergenic
TGCTACTAGCTAGTAATCAA+AGG 0.541349 1_1:+60085693 Msa0032930:five_prime_UTR
TGTTGGAGTGCTTAGTGCAC+CGG 0.541788 1_1:+60088841 Msa0032930:CDS
CCCAAAGGTATTGAACCAAT+CGG 0.545010 1_1:-60090591 None:intergenic
CTGAGGAGTTGAGCTGTCCT+CGG 0.545263 1_1:-60090410 None:intergenic
AAAGGTTGAGGATCAGGTAC+TGG 0.545680 1_1:-60085809 None:intergenic
AGTTAGCTCAATACCAATTG+TGG 0.548842 1_1:+60090861 Msa0032930:CDS
ATGTCTTCTAGTCTCTCAAA+AGG 0.548979 1_1:-60090331 None:intergenic
TATCAAACCTTGCCAGACTC+CGG 0.549980 1_1:-60088474 None:intergenic
TTAGGATGAAATTGGAAGGA+GGG 0.550294 1_1:+60091870 Msa0032930:three_prime_UTR
AATGTATGCTAGGATAAGCC+TGG 0.551088 1_1:+60091028 Msa0032930:CDS
TATTATGCATTCTTCTTCCG+AGG 0.552614 1_1:+60090393 Msa0032930:CDS
AAGTATCTTTGGCTCCTGTG+TGG 0.554132 1_1:+60088798 Msa0032930:CDS
ATGTCAGGTTCATCAGCTGC+AGG 0.555266 1_1:+60085755 Msa0032930:CDS
GCAGAACCATATATGTTACA+TGG 0.555752 1_1:+60087722 Msa0032930:CDS
AACAGCCAATTGCAACGCTA+AGG 0.557100 1_1:+60090646 Msa0032930:CDS
TTCTTTAGGATGAAATTGGA+AGG 0.559424 1_1:+60091866 Msa0032930:three_prime_UTR
TCTGCCTGCAGGAGTGTGCA+AGG 0.559432 1_1:+60091751 Msa0032930:CDS
GCTATCGCTCTAATGAATCA+AGG 0.560125 1_1:+60090690 Msa0032930:CDS
CCAAACAAACAAGTGAGGAA+TGG 0.562084 1_1:-60085834 None:intergenic
TTTAGGATGAAATTGGAAGG+AGG 0.565109 1_1:+60091869 Msa0032930:three_prime_UTR
AAACAACTTGAAATCCAGTC+GGG 0.566738 1_1:-60086348 None:intergenic
GAATGCATAATAGCAACTAC+TGG 0.570220 1_1:-60090382 None:intergenic
CGGCCTTCAATTCGAGACAT+TGG 0.573549 1_1:-60086325 None:intergenic
TCATCAGCTGCAGGTAGAGG+AGG 0.573943 1_1:+60085764 Msa0032930:CDS
CTTGACTCCAGGATTTCATA+CGG 0.581995 1_1:+60086375 Msa0032930:CDS
TATATGATGTATATTCAAGA+AGG 0.584774 1_1:+60090899 Msa0032930:CDS
TACAGGTGTTGGAGAAGTTG+TGG 0.586664 1_1:+60091720 Msa0032930:intron
AGAAACATACTTTAGCAGCA+TGG 0.589951 1_1:+60090105 Msa0032930:CDS
GAGACATGCAGAGCAAACTC+TGG 0.590289 1_1:-60088399 None:intergenic
GTAGATGGGCGCCAAAAGTG+GGG 0.591294 1_1:+60090613 Msa0032930:CDS
CTAGATGTGAAATGTATGCT+AGG 0.597927 1_1:+60091018 Msa0032930:CDS
CACAGTGAACACTATTTCGG+TGG 0.598731 1_1:+60087700 Msa0032930:CDS
GAAGTCATATGTAGCAGCTG+AGG 0.600897 1_1:-60090427 None:intergenic
TTGCATTGTGAACTGTGCTA+TGG 0.602161 1_1:-60085570 None:intergenic
GTGCAAGGGATCATTTCCAT+AGG 0.609204 1_1:+60091766 Msa0032930:CDS
CAGAACCATATATGTTACAT+GGG 0.619520 1_1:+60087723 Msa0032930:CDS
CATCACCACATGCAATGGAT+CGG 0.619982 1_1:-60091517 None:intergenic
TAGATGGGCGCCAAAAGTGG+GGG 0.625100 1_1:+60090614 Msa0032930:CDS
GTTGGAAGTATAAGTCCGTA+AGG 0.626388 1_1:-60091483 None:intergenic
CTGCCTGCAGGAGTGTGCAA+GGG 0.626861 1_1:+60091752 Msa0032930:CDS
CAAACAACTTGAAATCCAGT+CGG 0.630864 1_1:-60086349 None:intergenic
CGAAATAGTGTTCACTGTGG+CGG 0.638369 1_1:-60087696 None:intergenic
GAGAGAAAATTACAGCAATG+TGG 0.643369 1_1:+60090131 Msa0032930:CDS
AGTGAATGAAAATGAGACGT+AGG 0.645002 1_1:-60085523 None:intergenic
CTTACATCAACAAAACTCCA+AGG 0.646824 1_1:-60090179 None:intergenic
GAGGTCCGATCCATTGCATG+TGG 0.652746 1_1:+60091512 Msa0032930:CDS
TTTGGCGCCCATCTACCCAA+AGG 0.652925 1_1:-60090606 None:intergenic
TTTGTGTGGATGGTGTGTGG+CGG 0.661221 1_1:+60087639 Msa0032930:CDS
TATTAATGTCACTAGACACA+TGG 0.669317 1_1:+60087778 Msa0032930:CDS
CAACTTGAAATCCAGTCGGG+CGG 0.674400 1_1:-60086345 None:intergenic
GGTGAAACCGCGTTTCTATG+CGG 0.677368 1_1:+60085866 Msa0032930:CDS
GGATCGGACCTCAAACACGT+TGG 0.679462 1_1:-60091501 None:intergenic
TGAGGCCAAACAAACAAGTG+AGG 0.681158 1_1:-60085839 None:intergenic
TTGTTTGTTTGGCCTCATGG+AGG 0.688091 1_1:+60085845 Msa0032930:CDS
AGGTGTTGGAGAAGTTGTGG+TGG 0.695836 1_1:+60091723 Msa0032930:intron
CACTTCCTAGAATCCCACAC+AGG 0.698640 1_1:-60088812 None:intergenic
GAAAGAACCGCATAGAAACG+CGG 0.718422 1_1:-60085873 None:intergenic
AACGCGGTTTCACCTCCATG+AGG 0.729601 1_1:-60085857 None:intergenic
CACCGAAATAGTGTTCACTG+TGG 0.763286 1_1:-60087699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCATATTTATATTAATTT+AGG - chr1_1:60085627-60085646 None:intergenic 10.0%
!! AAGAACTAAAAAATATATAT+AGG + chr1_1:60088023-60088042 Msa0032930:intron 10.0%
!! AGAACTAAAAAATATATATA+GGG + chr1_1:60088024-60088043 Msa0032930:intron 10.0%
!!! AATTCTATTATCATTATTTT+AGG + chr1_1:60089117-60089136 Msa0032930:intron 10.0%
!! AAATATTAGAGATATTTATT+TGG + chr1_1:60089196-60089215 Msa0032930:intron 10.0%
!! AATATTAGAGATATTTATTT+GGG + chr1_1:60089197-60089216 Msa0032930:intron 10.0%
!! ATATAAATAAATATCCAAAA+TGG - chr1_1:60089300-60089319 None:intergenic 10.0%
!!! ATTTTGGATATTTATTTATA+TGG + chr1_1:60089299-60089318 Msa0032930:intron 10.0%
!!! AGATTATTTTAATATAATAC+GGG - chr1_1:60089539-60089558 None:intergenic 10.0%
!!! GAGATTATTTTAATATAATA+CGG - chr1_1:60089540-60089559 None:intergenic 10.0%
!!! TAAATTTTCTACTTAAAATT+GGG - chr1_1:60090249-60090268 None:intergenic 10.0%
!! ATACATTAAAATTAAAATAC+AGG + chr1_1:60091703-60091722 Msa0032930:intron 10.0%
!! ATTAAGAAATAAATTAATCT+TGG + chr1_1:60091929-60091948 Msa0032930:three_prime_UTR 10.0%
!! ATATTTATATTAATTTAGGC+AGG - chr1_1:60085623-60085642 None:intergenic 15.0%
!!! GATTTTAAAAATTCATATAG+AGG - chr1_1:60086408-60086427 None:intergenic 15.0%
!!! ATATGAATTTTTAAAATCTG+AGG + chr1_1:60086410-60086429 Msa0032930:intron 15.0%
!! AGATAAATGTTAATACAAAT+CGG + chr1_1:60086682-60086701 Msa0032930:intron 15.0%
!! AATGAAAGTTTATTTACAAT+AGG - chr1_1:60087308-60087327 None:intergenic 15.0%
!!! TCAATAAAAGAAGAATTTTT+AGG - chr1_1:60088180-60088199 None:intergenic 15.0%
!! TAAAATATATATTGAACACA+AGG - chr1_1:60088758-60088777 None:intergenic 15.0%
!!! CTAAATATTTTTTACCATTT+AGG + chr1_1:60089042-60089061 Msa0032930:intron 15.0%
!! ATAATGATAATAGAATTCAA+TGG - chr1_1:60089114-60089133 None:intergenic 15.0%
!!! ATAGATTTTGTAAAAACAAA+TGG + chr1_1:60089573-60089592 Msa0032930:intron 15.0%
!!! GTAAATTTTCTACTTAAAAT+TGG - chr1_1:60090250-60090269 None:intergenic 15.0%
!!! TATATTTATTTTTAATCTGC+AGG + chr1_1:60090303-60090322 Msa0032930:intron 15.0%
!! ATGTATAAATTTAATGCTAT+TGG - chr1_1:60091123-60091142 None:intergenic 15.0%
!! TTAAATTGAATATAAAGTGA+AGG + chr1_1:60091261-60091280 Msa0032930:intron 15.0%
!! GTTAAATTTCAATTAGTATA+AGG + chr1_1:60091294-60091313 Msa0032930:intron 15.0%
!! GTTAGACTAAATATATTTAT+CGG + chr1_1:60091371-60091390 Msa0032930:intron 15.0%
!! TTAGACTAAATATATTTATC+GGG + chr1_1:60091372-60091391 Msa0032930:intron 15.0%
!! TCTAGAAAATTATTTGAGTA+TGG + chr1_1:60086028-60086047 Msa0032930:intron 20.0%
!! CAAAAAAAAAACTTACCAAA+AGG - chr1_1:60086103-60086122 None:intergenic 20.0%
!! ATTGTATAGTTTATTCAACA+TGG + chr1_1:60086171-60086190 Msa0032930:intron 20.0%
!!! TGTTTTTGTACTATAATTTC+TGG + chr1_1:60086944-60086963 Msa0032930:intron 20.0%
!! TAAATTTGAATCTACTCATT+TGG + chr1_1:60087517-60087536 Msa0032930:intron 20.0%
!! TAAAAATTGCATAATATGAG+AGG + chr1_1:60087579-60087598 Msa0032930:intron 20.0%
!! AAAAATTGCATAATATGAGA+GGG + chr1_1:60087580-60087599 Msa0032930:intron 20.0%
!! CTTAAGTGTGTTATATATAT+AGG + chr1_1:60087869-60087888 Msa0032930:intron 20.0%
!! AAAATATATATAGGGAGTTT+CGG + chr1_1:60088032-60088051 Msa0032930:intron 20.0%
!! TAAAAAAATTAATCGGTGAA+AGG + chr1_1:60088094-60088113 Msa0032930:intron 20.0%
!! AAAAAAATTAATCGGTGAAA+GGG + chr1_1:60088095-60088114 Msa0032930:intron 20.0%
!! AAACAATCATCAATTGAATA+AGG - chr1_1:60088130-60088149 None:intergenic 20.0%
!!! TATTCAATTGATGATTGTTT+TGG + chr1_1:60088130-60088149 Msa0032930:intron 20.0%
!!! TAAAAGAAGAATTTTTAGGA+GGG - chr1_1:60088176-60088195 None:intergenic 20.0%
!!! ATAAAAGAAGAATTTTTAGG+AGG - chr1_1:60088177-60088196 None:intergenic 20.0%
!! AAGAGAATATAAGAATAATC+AGG - chr1_1:60088264-60088283 None:intergenic 20.0%
!! GCATAAATTTCAATACTATA+AGG - chr1_1:60088322-60088341 None:intergenic 20.0%
!!! ATAGCAATTTATCTGATTTT+TGG + chr1_1:60088533-60088552 Msa0032930:intron 20.0%
!!! AATTTGCTTAAGATAATTTC+AGG + chr1_1:60088563-60088582 Msa0032930:intron 20.0%
!! TTAACTTAATATATGCTTTC+AGG + chr1_1:60088775-60088794 Msa0032930:intron 20.0%
!!! TAATTTCTTTTAACTTCACA+TGG - chr1_1:60088996-60089015 None:intergenic 20.0%
!! TGAAGTTAAAAGAAATTACA+AGG + chr1_1:60088998-60089017 Msa0032930:intron 20.0%
!! ATATTTAGCATAAATCAACT+TGG - chr1_1:60089030-60089049 None:intergenic 20.0%
!! ACTAATTAATTATGCCTAAA+TGG - chr1_1:60089059-60089078 None:intergenic 20.0%
!!! AATCAATCATTTTATGTAGT+AGG + chr1_1:60089145-60089164 Msa0032930:intron 20.0%
!! ATTTATTTATATGGTATGTC+TGG + chr1_1:60089308-60089327 Msa0032930:intron 20.0%
!! GTTATACTTCAATACATTAT+TGG + chr1_1:60089367-60089386 Msa0032930:intron 20.0%
!! GGAAAATAGAATAAAAGATA+AGG - chr1_1:60089769-60089788 None:intergenic 20.0%
!!! AATTTTTCTCATATGTGTTA+AGG - chr1_1:60090207-60090226 None:intergenic 20.0%
!!! TTTAAAATTTTTGCAATGCA+AGG + chr1_1:60090357-60090376 Msa0032930:CDS 20.0%
!! TATATGATGTATATTCAAGA+AGG + chr1_1:60090899-60090918 Msa0032930:CDS 20.0%
!!! TTTTTTTTTCTTTTTCCGTA+AGG + chr1_1:60091330-60091349 Msa0032930:intron 20.0%
!!! TTTTTTTTCCTTTATGCAAA+TGG + chr1_1:60091574-60091593 Msa0032930:intron 20.0%
!! TAAAATTAAAATACAGGTGT+TGG + chr1_1:60091709-60091728 Msa0032930:intron 20.0%
!!! CTTTGAAAAACTATGTTTAA+TGG + chr1_1:60091838-60091857 Msa0032930:three_prime_UTR 20.0%
!!! CTAGTTATCTATTTTATTTG+CGG + chr1_1:60091897-60091916 Msa0032930:three_prime_UTR 20.0%
!!! TGTTGTAGAGTTTTAGAAAA+CGG - chr1_1:60085495-60085514 None:intergenic 25.0%
!!! CTCAAATAATTTTCTAGAAC+AGG - chr1_1:60086026-60086045 None:intergenic 25.0%
!!! TTTGTTTTCTCATATTGCTT+GGG + chr1_1:60086564-60086583 Msa0032930:intron 25.0%
!!! ATTGTTTTGATGTTGTTTCA+AGG + chr1_1:60086744-60086763 Msa0032930:intron 25.0%
! ATGTAATGAAAGAGTTGAAA+AGG - chr1_1:60086891-60086910 None:intergenic 25.0%
!!! GGTTTTTTTTTAAGAAGTGT+TGG + chr1_1:60087101-60087120 Msa0032930:intron 25.0%
!! TCTAAAGAGCAATTTTCAAA+GGG + chr1_1:60087254-60087273 Msa0032930:intron 25.0%
! TCTCACAGTTATTAATGTAT+CGG + chr1_1:60087490-60087509 Msa0032930:intron 25.0%
! AAATATATGCAACAAACCAA+GGG - chr1_1:60087834-60087853 None:intergenic 25.0%
! AAAATATATGCAACAAACCA+AGG - chr1_1:60087835-60087854 None:intergenic 25.0%
!! TTTGTTGCATATATTTTGCT+TGG + chr1_1:60087838-60087857 Msa0032930:intron 25.0%
! GATTAACATTATCGTCAAAA+TGG + chr1_1:60087909-60087928 Msa0032930:intron 25.0%
!!! TGCATTTATAGTCTTGTAAT+TGG + chr1_1:60087963-60087982 Msa0032930:intron 25.0%
!! TCAGATAAATTGCTATTGAT+TGG - chr1_1:60088529-60088548 None:intergenic 25.0%
! ATTGCATATTCTATATGAAC+AGG + chr1_1:60088623-60088642 Msa0032930:CDS 25.0%
! TCATGTAAATAGTGTAATGA+GGG - chr1_1:60088662-60088681 None:intergenic 25.0%
!! AAAGAGGTTTGTAGAAATTT+TGG + chr1_1:60088881-60088900 Msa0032930:intron 25.0%
! TTGAATGAAAACTGAACAAT+TGG + chr1_1:60088913-60088932 Msa0032930:intron 25.0%
!! TAGGTTCTAGTAAAACTATT+TGG + chr1_1:60089164-60089183 Msa0032930:intron 25.0%
!! AGGTTCTAGTAAAACTATTT+GGG + chr1_1:60089165-60089184 Msa0032930:intron 25.0%
!! GATTTATAGTTCTTCCATTT+TGG + chr1_1:60089283-60089302 Msa0032930:intron 25.0%
! TTCACTTATAGTAGAAGATA+TGG + chr1_1:60089394-60089413 Msa0032930:intron 25.0%
! TTGTAGTCAAGCTATAAATA+AGG + chr1_1:60089500-60089519 Msa0032930:intron 25.0%
! TGTAGTCAAGCTATAAATAA+GGG + chr1_1:60089501-60089520 Msa0032930:intron 25.0%
! TGTAAAAACAAATGGTATAC+AGG + chr1_1:60089581-60089600 Msa0032930:intron 25.0%
!! AATTTCCCTTATGATCTTTT+TGG + chr1_1:60089669-60089688 Msa0032930:intron 25.0%
!! TTAGATAAATTAGGGACTTT+TGG - chr1_1:60089742-60089761 None:intergenic 25.0%
! AAGGTCTGTTAGATAAATTA+GGG - chr1_1:60089750-60089769 None:intergenic 25.0%
! TAAGGTCTGTTAGATAAATT+AGG - chr1_1:60089751-60089770 None:intergenic 25.0%
!! CTTTTATTCTATTTTCCCAA+TGG + chr1_1:60089772-60089791 Msa0032930:intron 25.0%
! CATGCATATGTTTAAAAGTT+AGG - chr1_1:60090003-60090022 None:intergenic 25.0%
!! CTAACTTTTAAACATATGCA+TGG + chr1_1:60090001-60090020 Msa0032930:intron 25.0%
! ATGTAAGCTTTCACATTTAT+TGG + chr1_1:60090468-60090487 Msa0032930:intron 25.0%
!! AATACATTTTGCTTCTAACA+TGG - chr1_1:60090782-60090801 None:intergenic 25.0%
!! TCTACATTACTTGTTGATTA+AGG + chr1_1:60091088-60091107 Msa0032930:intron 25.0%
! CATGTTTCATTAGTTCATTA+TGG - chr1_1:60091174-60091193 None:intergenic 25.0%
! CATAATGAACTAATGAAACA+TGG + chr1_1:60091172-60091191 Msa0032930:intron 25.0%
! CTAACAATATTAGCATTGTT+AGG - chr1_1:60091356-60091375 None:intergenic 25.0%
! TGATGTGTTCAAATTATTGT+TGG + chr1_1:60091789-60091808 Msa0032930:CDS 25.0%
! GATGTGTTCAAATTATTGTT+GGG + chr1_1:60091790-60091809 Msa0032930:CDS 25.0%
!!! AAATTATTGTTGGGTTAGTT+AGG + chr1_1:60091799-60091818 Msa0032930:exon 25.0%
!! AACTCAAGTTTCTTGTTGTT+TGG - chr1_1:60085388-60085407 None:intergenic 30.0%
! TGATTTGAGATTGAAATGTC+AGG + chr1_1:60085740-60085759 Msa0032930:exon 30.0%
ATGCTATCAAAACGAATCAA+AGG - chr1_1:60086222-60086241 None:intergenic 30.0%
!! TATTTTTGTGTATGCACAGA+TGG + chr1_1:60086290-60086309 Msa0032930:intron 30.0%
GAAAAATGGTATTCTGATCA+AGG - chr1_1:60086507-60086526 None:intergenic 30.0%
!! GAATACCATTTTTCTCTCTT+TGG + chr1_1:60086513-60086532 Msa0032930:intron 30.0%
!! GTTTGTTTTCTCATATTGCT+TGG + chr1_1:60086563-60086582 Msa0032930:intron 30.0%
! TTGTTTTCTCATATTGCTTG+GGG + chr1_1:60086565-60086584 Msa0032930:intron 30.0%
TGCATGTAAAGCAATAGAAA+AGG - chr1_1:60086988-60087007 None:intergenic 30.0%
TACATGCAATGTTTGTATCT+TGG + chr1_1:60087000-60087019 Msa0032930:intron 30.0%
TTGTTGTGGTTTACAACAAA+TGG + chr1_1:60087032-60087051 Msa0032930:intron 30.0%
AGACTTCCAAAATTTCTCTA+GGG - chr1_1:60087237-60087256 None:intergenic 30.0%
TAGACTTCCAAAATTTCTCT+AGG - chr1_1:60087238-60087257 None:intergenic 30.0%
! GTCTAAAGAGCAATTTTCAA+AGG + chr1_1:60087253-60087272 Msa0032930:intron 30.0%
TTAATGATGCATTCACATTC+TGG + chr1_1:60087465-60087484 Msa0032930:intron 30.0%
GATACATTAATAACTGTGAG+AGG - chr1_1:60087491-60087510 None:intergenic 30.0%
GCACAATATCAAACATTTCA+TGG + chr1_1:60087539-60087558 Msa0032930:intron 30.0%
CAGAACCATATATGTTACAT+GGG + chr1_1:60087723-60087742 Msa0032930:CDS 30.0%
!! AATATTTTCAAGCTGCAGAT+GGG - chr1_1:60087762-60087781 None:intergenic 30.0%
!! TAATATTTTCAAGCTGCAGA+TGG - chr1_1:60087763-60087782 None:intergenic 30.0%
TATTAATGTCACTAGACACA+TGG + chr1_1:60087778-60087797 Msa0032930:CDS 30.0%
AATATATGCAACAAACCAAG+GGG - chr1_1:60087833-60087852 None:intergenic 30.0%
! TGCATATATTTTGCTTGGAA+AGG + chr1_1:60087843-60087862 Msa0032930:intron 30.0%
AAAAGAAAGTAGCTTAACCT+TGG + chr1_1:60088347-60088366 Msa0032930:intron 30.0%
TGGAAACATTGAAAAGACAA+AGG - chr1_1:60088509-60088528 None:intergenic 30.0%
!! GCAATTTATCTGATTTTTGG+TGG + chr1_1:60088536-60088555 Msa0032930:intron 30.0%
TAAATAGTGTAATGAGGGAA+GGG - chr1_1:60088657-60088676 None:intergenic 30.0%
CTCATGTAAATAGTGTAATG+AGG - chr1_1:60088663-60088682 None:intergenic 30.0%
CTCATTACACTATTTACATG+AGG + chr1_1:60088661-60088680 Msa0032930:intron 30.0%
AACTGAACAATTGGCAAAAA+TGG + chr1_1:60088922-60088941 Msa0032930:intron 30.0%
TTGGCAAAAATGGTTGAAAA+AGG + chr1_1:60088932-60088951 Msa0032930:intron 30.0%
!!! TTTTAACTTCACATGGACTT+AGG - chr1_1:60088989-60089008 None:intergenic 30.0%
! GCTAAAAGGTACATATTTCA+AGG - chr1_1:60089232-60089251 None:intergenic 30.0%
AAGCATCAATGATAGCTAAA+AGG - chr1_1:60089246-60089265 None:intergenic 30.0%
CTAAATGCTATCTAAGAATG+AGG - chr1_1:60089433-60089452 None:intergenic 30.0%
CTCATTCTTAGATAGCATTT+AGG + chr1_1:60089431-60089450 Msa0032930:intron 30.0%
GTAGTCAAGCTATAAATAAG+GGG + chr1_1:60089502-60089521 Msa0032930:intron 30.0%
AAAGAGAGGATACCAAATAA+AGG - chr1_1:60089617-60089636 None:intergenic 30.0%
! TATTTTCCTTTCCTCATTGT+AGG + chr1_1:60089636-60089655 Msa0032930:intron 30.0%
GAAAGCCAAAAAGATCATAA+GGG - chr1_1:60089677-60089696 None:intergenic 30.0%
TGAAAGCCAAAAAGATCATA+AGG - chr1_1:60089678-60089697 None:intergenic 30.0%
TATAGGACAGAAATAACTAC+TGG - chr1_1:60089702-60089721 None:intergenic 30.0%
TCCTATATTTGACATTGCAT+AGG + chr1_1:60089715-60089734 Msa0032930:intron 30.0%
TCCTATGCAATGTCAAATAT+AGG - chr1_1:60089719-60089738 None:intergenic 30.0%
AAACAAAGAGATTTAGCATC+GGG - chr1_1:60089881-60089900 None:intergenic 30.0%
GAAACAAAGAGATTTAGCAT+CGG - chr1_1:60089882-60089901 None:intergenic 30.0%
TCTCTATTAACACCAATGAT+TGG + chr1_1:60089974-60089993 Msa0032930:intron 30.0%
AAAGTTAGGAAACCAATCAT+TGG - chr1_1:60089989-60090008 None:intergenic 30.0%
AATGTGGAACTGATAGTAAT+GGG + chr1_1:60090147-60090166 Msa0032930:CDS 30.0%
!!! TTATTTTTAATCTGCAGGCT+AGG + chr1_1:60090308-60090327 Msa0032930:intron 30.0%
! TTATTGGCTATGCGTATAAA+TGG + chr1_1:60090484-60090503 Msa0032930:intron 30.0%
! AATGGTTTGGAACTAATGTA+CGG + chr1_1:60090502-60090521 Msa0032930:intron 30.0%
! AATGTACGGAGTTAATTTTC+AGG + chr1_1:60090516-60090535 Msa0032930:intron 30.0%
GTCTAAACAAAAAAGAGACT+TGG - chr1_1:60090742-60090761 None:intergenic 30.0%
GAGAGATACTAAAATTATCC+AGG - chr1_1:60091049-60091068 None:intergenic 30.0%
!! GGATAATTTTAGTATCTCTC+AGG + chr1_1:60091049-60091068 Msa0032930:CDS 30.0%
AATCAACAAGTAATGTAGAG+AGG - chr1_1:60091087-60091106 None:intergenic 30.0%
! GCATTGAATTTGAGACAAAT+TGG + chr1_1:60091453-60091472 Msa0032930:CDS 30.0%
CAAATTGGAAAATGTCCTTA+CGG + chr1_1:60091468-60091487 Msa0032930:CDS 30.0%
ATATAGCACCATTTGCATAA+AGG - chr1_1:60091585-60091604 None:intergenic 30.0%
! ATATATTGTTGTTCTTGCTC+AGG - chr1_1:60091652-60091671 None:intergenic 30.0%
TAATTTGAACACATCACCTA+TGG - chr1_1:60091785-60091804 None:intergenic 30.0%
! GTTAGTTAGGAAAACTGTTT+TGG + chr1_1:60091812-60091831 Msa0032930:exon 30.0%
! GTTTAATGGTCACTTTCTTT+AGG + chr1_1:60091852-60091871 Msa0032930:three_prime_UTR 30.0%
!! CACTTTCTTTAGGATGAAAT+TGG + chr1_1:60091862-60091881 Msa0032930:three_prime_UTR 30.0%
!! TTCTTTAGGATGAAATTGGA+AGG + chr1_1:60091866-60091885 Msa0032930:three_prime_UTR 30.0%
CAACAAGAAACTTGAGTTAG+AGG + chr1_1:60085390-60085409 Msa0032930:five_prime_UTR 35.0%
!! AAAAAGCGCTTAACCGTATA+TGG - chr1_1:60085437-60085456 None:intergenic 35.0%
AGTGAATGAAAATGAGACGT+AGG - chr1_1:60085526-60085545 None:intergenic 35.0%
TGCTACTAGCTAGTAATCAA+AGG + chr1_1:60085693-60085712 Msa0032930:five_prime_UTR 35.0%
AACAAGTGAGGAATGGAAAA+AGG - chr1_1:60085830-60085849 None:intergenic 35.0%
! TGAGTATGGATTATTCAGCA+TGG + chr1_1:60086042-60086061 Msa0032930:intron 35.0%
TGGATTATTCAGCATGGTAT+TGG + chr1_1:60086048-60086067 Msa0032930:intron 35.0%
TTACCAATGTCTCGAATTGA+AGG + chr1_1:60086322-60086341 Msa0032930:CDS 35.0%
AAACAACTTGAAATCCAGTC+GGG - chr1_1:60086351-60086370 None:intergenic 35.0%
CAAACAACTTGAAATCCAGT+CGG - chr1_1:60086352-60086371 None:intergenic 35.0%
GATCTCCAAAGAGAGAAAAA+TGG - chr1_1:60086521-60086540 None:intergenic 35.0%
! TGTTTTCTCATATTGCTTGG+GGG + chr1_1:60086566-60086585 Msa0032930:intron 35.0%
GTGTAATGAAAGAGCTGAAA+AGG + chr1_1:60086766-60086785 Msa0032930:intron 35.0%
! GAAAAGGAAGTTGTTTCAAG+AGG + chr1_1:60086782-60086801 Msa0032930:intron 35.0%
! CTTGGTCATTTCATTTGTTG+TGG + chr1_1:60087018-60087037 Msa0032930:intron 35.0%
TGTGGTTTACAACAAATGGA+TGG + chr1_1:60087036-60087055 Msa0032930:intron 35.0%
TGAGTTGTCGTTCTGATATA+AGG + chr1_1:60087128-60087147 Msa0032930:intron 35.0%
! AACTGTTGTTGGGAGTATAA+AGG + chr1_1:60087198-60087217 Msa0032930:intron 35.0%
! TGGGAGTATAAAGGTCATTT+CGG + chr1_1:60087207-60087226 Msa0032930:intron 35.0%
GACTTCCAAAATTTCTCTAG+GGG - chr1_1:60087236-60087255 None:intergenic 35.0%
GCAGAACCATATATGTTACA+TGG + chr1_1:60087722-60087741 Msa0032930:CDS 35.0%
ATATATGCAACAAACCAAGG+GGG - chr1_1:60087832-60087851 None:intergenic 35.0%
!!! AATGGTGTGTTATTTTCTCC+AGG + chr1_1:60087927-60087946 Msa0032930:intron 35.0%
TTGAAAAGACAAAGGAGAGA+GGG - chr1_1:60088501-60088520 None:intergenic 35.0%
ATTGAAAAGACAAAGGAGAG+AGG - chr1_1:60088502-60088521 None:intergenic 35.0%
GTAAATAGTGTAATGAGGGA+AGG - chr1_1:60088658-60088677 None:intergenic 35.0%
TAACATACATTGCATGTGCA+TGG - chr1_1:60088716-60088735 None:intergenic 35.0%
!! ATGCTTTCAGGAAGTATCTT+TGG + chr1_1:60088787-60088806 Msa0032930:intron 35.0%
TTCAGTGCTTGAATAATGTC+CGG - chr1_1:60088863-60088882 None:intergenic 35.0%
!! CATTATTCAAGCACTGAAAG+AGG + chr1_1:60088865-60088884 Msa0032930:CDS 35.0%
ATCAATCAATGGAGTGATCA+AGG - chr1_1:60089481-60089500 None:intergenic 35.0%
GCTTGACTACAATCAATCAA+TGG - chr1_1:60089492-60089511 None:intergenic 35.0%
GAGGATACCAAATAAAGGAT+GGG - chr1_1:60089612-60089631 None:intergenic 35.0%
AGAGGATACCAAATAAAGGA+TGG - chr1_1:60089613-60089632 None:intergenic 35.0%
GAGGAAAGGAAAATAAAGAG+AGG - chr1_1:60089631-60089650 None:intergenic 35.0%
! GGTGTTAATAGAGATTAGCT+TGG - chr1_1:60089968-60089987 None:intergenic 35.0%
CTAACATGCTTAATTTCAGC+CGG + chr1_1:60090046-60090065 Msa0032930:intron 35.0%
AAGTCCTTCATCAGTAAAAG+TGG - chr1_1:60090084-60090103 None:intergenic 35.0%
AGAAACATACTTTAGCAGCA+TGG + chr1_1:60090105-60090124 Msa0032930:CDS 35.0%
GAGAGAAAATTACAGCAATG+TGG + chr1_1:60090131-60090150 Msa0032930:CDS 35.0%
CAATGTGGAACTGATAGTAA+TGG + chr1_1:60090146-60090165 Msa0032930:CDS 35.0%
CTTACATCAACAAAACTCCA+AGG - chr1_1:60090182-60090201 None:intergenic 35.0%
ATGTCTTCTAGTCTCTCAAA+AGG - chr1_1:60090334-60090353 None:intergenic 35.0%
GAATGCATAATAGCAACTAC+TGG - chr1_1:60090385-60090404 None:intergenic 35.0%
TATTATGCATTCTTCTTCCG+AGG + chr1_1:60090393-60090412 Msa0032930:CDS 35.0%
AAGCGTTTCAAGAACGATTA+TGG + chr1_1:60090546-60090565 Msa0032930:CDS 35.0%
TTCAATACCTTTGGGTAGAT+GGG + chr1_1:60090599-60090618 Msa0032930:CDS 35.0%
AGTTAGCTCAATACCAATTG+TGG + chr1_1:60090861-60090880 Msa0032930:CDS 35.0%
ATACCAATTGTGGATGATTC+TGG + chr1_1:60090871-60090890 Msa0032930:CDS 35.0%
CTAGATGTGAAATGTATGCT+AGG + chr1_1:60091018-60091037 Msa0032930:CDS 35.0%
ATTAGCATTGTTAGGCCTTA+CGG - chr1_1:60091348-60091367 None:intergenic 35.0%
TTATACTTCCAACGTGTTTG+AGG + chr1_1:60091493-60091512 Msa0032930:CDS 35.0%
! TTTAGGATGAAATTGGAAGG+AGG + chr1_1:60091869-60091888 Msa0032930:three_prime_UTR 35.0%
TTAGGATGAAATTGGAAGGA+GGG + chr1_1:60091870-60091889 Msa0032930:three_prime_UTR 35.0%
CAGTAGCATGCATCCATATA+CGG + chr1_1:60085421-60085440 Msa0032930:five_prime_UTR 40.0%
TTGCATTGTGAACTGTGCTA+TGG - chr1_1:60085573-60085592 None:intergenic 40.0%
ATGGAAAAAGGTTGAGGATC+AGG - chr1_1:60085818-60085837 None:intergenic 40.0%
TGAGGAATGGAAAAAGGTTG+AGG - chr1_1:60085824-60085843 None:intergenic 40.0%
CCAAACAAACAAGTGAGGAA+TGG - chr1_1:60085837-60085856 None:intergenic 40.0%
CCATTCCTCACTTGTTTGTT+TGG + chr1_1:60085834-60085853 Msa0032930:CDS 40.0%
TTTCTATGCGGTTCTTTCAC+AGG + chr1_1:60085878-60085897 Msa0032930:CDS 40.0%
TTCTATGCGGTTCTTTCACA+GGG + chr1_1:60085879-60085898 Msa0032930:CDS 40.0%
!!! GCTGTCACTTTGTTTCCTTT+TGG + chr1_1:60086085-60086104 Msa0032930:intron 40.0%
CTTGACTCCAGGATTTCATA+CGG + chr1_1:60086375-60086394 Msa0032930:CDS 40.0%
CCAAATACCGTATGAAATCC+TGG - chr1_1:60086385-60086404 None:intergenic 40.0%
CCAGGATTTCATACGGTATT+TGG + chr1_1:60086382-60086401 Msa0032930:intron 40.0%
! TCTCTCTTTGGAGATCATAG+AGG + chr1_1:60086525-60086544 Msa0032930:intron 40.0%
! CTCTCTTTGGAGATCATAGA+GGG + chr1_1:60086526-60086545 Msa0032930:intron 40.0%
! TCTCTTTGGAGATCATAGAG+GGG + chr1_1:60086527-60086546 Msa0032930:intron 40.0%
GAAGAGGAAAGAAAGGGTAA+AGG + chr1_1:60086588-60086607 Msa0032930:intron 40.0%
! CTTGCTGTCCTGCTTTATAT+TGG + chr1_1:60086821-60086840 Msa0032930:intron 40.0%
TGTCCTGCTTTATATTGGCA+GGG + chr1_1:60086826-60086845 Msa0032930:intron 40.0%
GGTTTACAACAAATGGATGG+AGG + chr1_1:60087039-60087058 Msa0032930:intron 40.0%
TACAACAAATGGATGGAGGT+TGG + chr1_1:60087043-60087062 Msa0032930:intron 40.0%
!! TTGGACGGAGATTGGTTTAT+AGG + chr1_1:60087067-60087086 Msa0032930:intron 40.0%
!! TGGACGGAGATTGGTTTATA+GGG + chr1_1:60087068-60087087 Msa0032930:intron 40.0%
GGTTTATAGGGAGGAAAGTT+TGG + chr1_1:60087080-60087099 Msa0032930:intron 40.0%
GCAGACAGTTAACTGTTGTT+GGG + chr1_1:60087188-60087207 Msa0032930:intron 40.0%
! GGGAGTATAAAGGTCATTTC+GGG + chr1_1:60087208-60087227 Msa0032930:intron 40.0%
!! TGTGCAGTATCAGTTTTGTG+TGG + chr1_1:60087625-60087644 Msa0032930:intron 40.0%
!! CAGTATCAGTTTTGTGTGGA+TGG + chr1_1:60087629-60087648 Msa0032930:intron 40.0%
GAGCAGCAGCCATTTATAAA+CGG + chr1_1:60087668-60087687 Msa0032930:CDS 40.0%
AGCAGCAGCCATTTATAAAC+GGG + chr1_1:60087669-60087688 Msa0032930:CDS 40.0%
GGCATCCCATGTAACATATA+TGG - chr1_1:60087731-60087750 None:intergenic 40.0%
! TTAACCTTGGAGCTTTTCCA+GGG + chr1_1:60088360-60088379 Msa0032930:intron 40.0%
! TTTTCCAGGGAGTTTTTCCT+AGG + chr1_1:60088373-60088392 Msa0032930:intron 40.0%
TACTGCTTCTCATTTGCTTC+CGG + chr1_1:60088455-60088474 Msa0032930:CDS 40.0%
TGAAAAGACAAAGGAGAGAG+GGG - chr1_1:60088500-60088519 None:intergenic 40.0%
! TCTAGGAAGTGCAAGTTTGT+TGG + chr1_1:60088824-60088843 Msa0032930:CDS 40.0%
GGTTGTACCCATCCTTTATT+TGG + chr1_1:60089602-60089621 Msa0032930:intron 40.0%
CAAGAACCTACAATGAGGAA+AGG - chr1_1:60089645-60089664 None:intergenic 40.0%
TGATGCAAGAACCTACAATG+AGG - chr1_1:60089650-60089669 None:intergenic 40.0%
ACAAACCATGGCATTTGTGA+AGG - chr1_1:60089823-60089842 None:intergenic 40.0%
TCCAGTGACAAAACAAACCA+TGG - chr1_1:60089835-60089854 None:intergenic 40.0%
!! CGATCCACTTTTACTGATGA+AGG + chr1_1:60090077-60090096 Msa0032930:CDS 40.0%
! GTAATGGGAAAGCATATCCT+TGG + chr1_1:60090162-60090181 Msa0032930:CDS 40.0%
GGCTATGCGTATAAATGGTT+TGG + chr1_1:60090489-60090508 Msa0032930:intron 40.0%
GAACGATTATGGTTCTTTGC+CGG + chr1_1:60090557-60090576 Msa0032930:CDS 40.0%
CCAATCGGTATTTGAAGAAC+CGG - chr1_1:60090579-60090598 None:intergenic 40.0%
! ACCGATTGGTTCAATACCTT+TGG + chr1_1:60090590-60090609 Msa0032930:CDS 40.0%
!! CCCAAAGGTATTGAACCAAT+CGG - chr1_1:60090594-60090613 None:intergenic 40.0%
! CCGATTGGTTCAATACCTTT+GGG + chr1_1:60090591-60090610 Msa0032930:CDS 40.0%
GTTCAATACCTTTGGGTAGA+TGG + chr1_1:60090598-60090617 Msa0032930:CDS 40.0%
! TTATTGGATTCCCCCACTTT+TGG - chr1_1:60090627-60090646 None:intergenic 40.0%
CGTTGCAATTGGCTGTTTAT+TGG - chr1_1:60090643-60090662 None:intergenic 40.0%
GCTATCGCTCTAATGAATCA+AGG + chr1_1:60090690-60090709 Msa0032930:CDS 40.0%
GAACCAGAATCATCCACAAT+TGG - chr1_1:60090877-60090896 None:intergenic 40.0%
TCACAGTGATCTTACTGCAT+TGG + chr1_1:60090995-60091014 Msa0032930:intron 40.0%
AATGTATGCTAGGATAAGCC+TGG + chr1_1:60091028-60091047 Msa0032930:CDS 40.0%
!!! TATGAAGTTTTTTGTGCCGC+AGG + chr1_1:60091431-60091450 Msa0032930:intron 40.0%
TGTCTCAAATTCAATGCCTG+CGG - chr1_1:60091450-60091469 None:intergenic 40.0%
! GTTGGAAGTATAAGTCCGTA+AGG - chr1_1:60091486-60091505 None:intergenic 40.0%
ATGGAACGCTTTGCTAATTC+TGG + chr1_1:60091537-60091556 Msa0032930:CDS 40.0%
TGTTGTTCTTGCTCAGGTAA+AGG - chr1_1:60091646-60091665 None:intergenic 40.0%
AAAGGTTGAGGATCAGGTAC+TGG - chr1_1:60085812-60085831 None:intergenic 45.0%
TGAGGCCAAACAAACAAGTG+AGG - chr1_1:60085842-60085861 None:intergenic 45.0%
CACTTGTTTGTTTGGCCTCA+TGG + chr1_1:60085842-60085861 Msa0032930:CDS 45.0%
TTGTTTGTTTGGCCTCATGG+AGG + chr1_1:60085845-60085864 Msa0032930:CDS 45.0%
GAAAGAACCGCATAGAAACG+CGG - chr1_1:60085876-60085895 None:intergenic 45.0%
! GTTGTTTGCTACTTGACTCC+AGG + chr1_1:60086364-60086383 Msa0032930:CDS 45.0%
TTTGGAGATCATAGAGGGGA+TGG + chr1_1:60086531-60086550 Msa0032930:intron 45.0%
TTGGAGATCATAGAGGGGAT+GGG + chr1_1:60086532-60086551 Msa0032930:intron 45.0%
TTGGGGGAAGAGGAAAGAAA+GGG + chr1_1:60086582-60086601 Msa0032930:intron 45.0%
CTGTCCTGCTTTATATTGGC+AGG + chr1_1:60086825-60086844 Msa0032930:intron 45.0%
CTTTATATTGGCAGGGCAGT+AGG + chr1_1:60086833-60086852 Msa0032930:intron 45.0%
! CAAATGGATGGAGGTTGGTT+TGG + chr1_1:60087048-60087067 Msa0032930:intron 45.0%
!! ACGGAGATTGGTTTATAGGG+AGG + chr1_1:60087071-60087090 Msa0032930:intron 45.0%
! CTTAAGTGCCACTAGTGTGA+CGG + chr1_1:60087166-60087185 Msa0032930:intron 45.0%
GGCAGACAGTTAACTGTTGT+TGG + chr1_1:60087187-60087206 Msa0032930:intron 45.0%
! GGGATCCCCTAGAGAAATTT+TGG + chr1_1:60087228-60087247 Msa0032930:intron 45.0%
!! AGTTTTGTGTGGATGGTGTG+TGG + chr1_1:60087636-60087655 Msa0032930:CDS 45.0%
GCGGTGAACCCGTTTATAAA+TGG - chr1_1:60087680-60087699 None:intergenic 45.0%
CGAAATAGTGTTCACTGTGG+CGG - chr1_1:60087699-60087718 None:intergenic 45.0%
CGCCACAGTGAACACTATTT+CGG + chr1_1:60087697-60087716 Msa0032930:CDS 45.0%
CACCGAAATAGTGTTCACTG+TGG - chr1_1:60087702-60087721 None:intergenic 45.0%
CACAGTGAACACTATTTCGG+TGG + chr1_1:60087700-60087719 Msa0032930:CDS 45.0%
ATGCATGCACATATGCTACC+TGG - chr1_1:60087948-60087967 None:intergenic 45.0%
! CTTAACCTTGGAGCTTTTCC+AGG + chr1_1:60088359-60088378 Msa0032930:intron 45.0%
TATCAAACCTTGCCAGACTC+CGG - chr1_1:60088477-60088496 None:intergenic 45.0%
! AAGTATCTTTGGCTCCTGTG+TGG + chr1_1:60088798-60088817 Msa0032930:CDS 45.0%
! AGTATCTTTGGCTCCTGTGT+GGG + chr1_1:60088799-60088818 Msa0032930:CDS 45.0%
GAGTGATCAAGGATCTACTC+AGG - chr1_1:60089470-60089489 None:intergenic 45.0%
!!! GCCATGGTTTGTTTTGTCAC+TGG + chr1_1:60089831-60089850 Msa0032930:intron 45.0%
AAAGTGGATCGATGACTCTC+CGG - chr1_1:60090068-60090087 None:intergenic 45.0%
GAAGTCATATGTAGCAGCTG+AGG - chr1_1:60090430-60090449 None:intergenic 45.0%
CCGGTTCTTCAAATACCGAT+TGG + chr1_1:60090576-60090595 Msa0032930:CDS 45.0%
AACAGCCAATTGCAACGCTA+AGG + chr1_1:60090646-60090665 Msa0032930:CDS 45.0%
!! TTTGGCCTTAGCGTTGCAAT+TGG - chr1_1:60090654-60090673 None:intergenic 45.0%
!! GCAGCACTAAGAGAAGCATT+TGG - chr1_1:60090672-60090691 None:intergenic 45.0%
GTCTAGCTGTTCTTAGCACA+AGG - chr1_1:60090941-60090960 None:intergenic 45.0%
CATCACCACATGCAATGGAT+CGG - chr1_1:60091520-60091539 None:intergenic 45.0%
!! TACAGGTGTTGGAGAAGTTG+TGG + chr1_1:60091720-60091739 Msa0032930:intron 45.0%
GTGCAAGGGATCATTTCCAT+AGG + chr1_1:60091766-60091785 Msa0032930:CDS 45.0%
!!! AACATTTTAAAAAAATTAAT+CGG + chr1_1:60088087-60088106 Msa0032930:intron 5.0%
ATGTCAGGTTCATCAGCTGC+AGG + chr1_1:60085755-60085774 Msa0032930:CDS 50.0%
GGTGAAACCGCGTTTCTATG+CGG + chr1_1:60085866-60085885 Msa0032930:CDS 50.0%
CGGCCTTCAATTCGAGACAT+TGG - chr1_1:60086328-60086347 None:intergenic 50.0%
CAACTTGAAATCCAGTCGGG+CGG - chr1_1:60086348-60086367 None:intergenic 50.0%
CTCATATTGCTTGGGGGAAG+AGG + chr1_1:60086572-60086591 Msa0032930:intron 50.0%
CTTGGGGGAAGAGGAAAGAA+AGG + chr1_1:60086581-60086600 Msa0032930:intron 50.0%
CTGCCCTGCCAATATAAAGC+AGG - chr1_1:60086832-60086851 None:intergenic 50.0%
!! TGGATGGAGGTTGGTTTGGA+CGG + chr1_1:60087052-60087071 Msa0032930:intron 50.0%
!! AGGTTGGTTTGGACGGAGAT+TGG + chr1_1:60087059-60087078 Msa0032930:intron 50.0%
TTTGTGTGGATGGTGTGTGG+CGG + chr1_1:60087639-60087658 Msa0032930:CDS 50.0%
AGCTGCAGATGGGATCTACT+AGG - chr1_1:60087752-60087771 None:intergenic 50.0%
! CAAACCAAGGGGGCATAGAT+GGG - chr1_1:60087822-60087841 None:intergenic 50.0%
! ACAAACCAAGGGGGCATAGA+TGG - chr1_1:60087823-60087842 None:intergenic 50.0%
AACTCCCTGGAAAAGCTCCA+AGG - chr1_1:60088367-60088386 None:intergenic 50.0%
GTGTCCTAGGAAAAACTCCC+TGG - chr1_1:60088380-60088399 None:intergenic 50.0%
AGAGCAAACTCTGGTGTCCT+AGG - chr1_1:60088393-60088412 None:intergenic 50.0%
GAGACATGCAGAGCAAACTC+TGG - chr1_1:60088402-60088421 None:intergenic 50.0%
TCTCATTTGCTTCCGGAGTC+TGG + chr1_1:60088462-60088481 Msa0032930:CDS 50.0%
CACTTCCTAGAATCCCACAC+AGG - chr1_1:60088815-60088834 None:intergenic 50.0%
! TGTTGGAGTGCTTAGTGCAC+CGG + chr1_1:60088841-60088860 Msa0032930:CDS 50.0%
ACCAGAAACACCATCAGCAG+AGG - chr1_1:60089800-60089819 None:intergenic 50.0%
CTGGTCCTTCACAAATGCCA+TGG + chr1_1:60089815-60089834 Msa0032930:intron 50.0%
!! AGCATCGGGTGCAGGTTTTA+TGG - chr1_1:60089867-60089886 None:intergenic 50.0%
! AGAGATTTAGCATCGGGTGC+AGG - chr1_1:60089875-60089894 None:intergenic 50.0%
CGATCCATTGCATGTGGTGA+TGG + chr1_1:60091518-60091537 Msa0032930:CDS 50.0%
CGTTCCATCACCACATGCAA+TGG - chr1_1:60091525-60091544 None:intergenic 50.0%
!! AGGTGTTGGAGAAGTTGTGG+TGG + chr1_1:60091723-60091742 Msa0032930:intron 50.0%
GGTTCATCAGCTGCAGGTAG+AGG + chr1_1:60085761-60085780 Msa0032930:CDS 55.0%
TCATCAGCTGCAGGTAGAGG+AGG + chr1_1:60085764-60085783 Msa0032930:CDS 55.0%
GCTGCAGGTAGAGGAGGAAA+TGG + chr1_1:60085770-60085789 Msa0032930:CDS 55.0%
AACGCGGTTTCACCTCCATG+AGG - chr1_1:60085860-60085879 None:intergenic 55.0%
ACTGTCTGCCGTCACACTAG+TGG - chr1_1:60087177-60087196 None:intergenic 55.0%
ACTTCCCATCTATGCCCCCT+TGG + chr1_1:60087815-60087834 Msa0032930:intron 55.0%
TTTGCTTCCGGAGTCTGGCA+AGG + chr1_1:60088467-60088486 Msa0032930:CDS 55.0%
TGGCTCCTGTGTGGGATTCT+AGG + chr1_1:60088807-60088826 Msa0032930:CDS 55.0%
!! CCATCAGCAGAGGCACCATT+GGG - chr1_1:60089790-60089809 None:intergenic 55.0%
!! ACCATCAGCAGAGGCACCAT+TGG - chr1_1:60089791-60089810 None:intergenic 55.0%
! GCCTCTGCTGATGGTGTTTC+TGG + chr1_1:60089796-60089815 Msa0032930:intron 55.0%
CTGAGGAGTTGAGCTGTCCT+CGG - chr1_1:60090413-60090432 None:intergenic 55.0%
TTTGGCGCCCATCTACCCAA+AGG - chr1_1:60090609-60090628 None:intergenic 55.0%
GGTAGATGGGCGCCAAAAGT+GGG + chr1_1:60090612-60090631 Msa0032930:CDS 55.0%
GTAGATGGGCGCCAAAAGTG+GGG + chr1_1:60090613-60090632 Msa0032930:CDS 55.0%
TAGATGGGCGCCAAAAGTGG+GGG + chr1_1:60090614-60090633 Msa0032930:CDS 55.0%
GGATCGGACCTCAAACACGT+TGG - chr1_1:60091504-60091523 None:intergenic 55.0%
GAGGTCCGATCCATTGCATG+TGG + chr1_1:60091512-60091531 Msa0032930:CDS 55.0%
CCCAATGGTGCCTCTGCTGA+TGG + chr1_1:60089787-60089806 Msa0032930:intron 60.0%
GGGTAGATGGGCGCCAAAAG+TGG + chr1_1:60090611-60090630 Msa0032930:CDS 60.0%
! TGGTGGTGAAGTCTGCCTGC+AGG + chr1_1:60091740-60091759 Msa0032930:CDS 60.0%
! TCTGCCTGCAGGAGTGTGCA+AGG + chr1_1:60091751-60091770 Msa0032930:CDS 60.0%
! CTGCCTGCAGGAGTGTGCAA+GGG + chr1_1:60091752-60091771 Msa0032930:CDS 60.0%
GATCCCTTGCACACTCCTGC+AGG - chr1_1:60091758-60091777 None:intergenic 60.0%
CGAATTGAAGGCCGCCCGAC+TGG + chr1_1:60086334-60086353 Msa0032930:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60085343 60091976 60085343 ID=Msa0032930;Name=Msa0032930
chr1_1 mRNA 60085343 60091976 60085343 ID=Msa0032930-mRNA-1;Parent=Msa0032930;Name=Msa0032930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=412|1|1|1|1|1|13|160|480
chr1_1 exon 60085343 60085900 60085343 ID=Msa0032930-mRNA-1:exon:18772;Parent=Msa0032930-mRNA-1
chr1_1 exon 60086309 60086396 60086309 ID=Msa0032930-mRNA-1:exon:18773;Parent=Msa0032930-mRNA-1
chr1_1 exon 60087632 60087799 60087632 ID=Msa0032930-mRNA-1:exon:18774;Parent=Msa0032930-mRNA-1
chr1_1 exon 60088381 60088488 60088381 ID=Msa0032930-mRNA-1:exon:18775;Parent=Msa0032930-mRNA-1
chr1_1 exon 60088585 60088644 60088585 ID=Msa0032930-mRNA-1:exon:18776;Parent=Msa0032930-mRNA-1
chr1_1 exon 60088797 60088886 60088797 ID=Msa0032930-mRNA-1:exon:18777;Parent=Msa0032930-mRNA-1
chr1_1 exon 60090065 60090196 60090065 ID=Msa0032930-mRNA-1:exon:18778;Parent=Msa0032930-mRNA-1
chr1_1 exon 60090325 60090469 60090325 ID=Msa0032930-mRNA-1:exon:18779;Parent=Msa0032930-mRNA-1
chr1_1 exon 60090538 60090711 60090538 ID=Msa0032930-mRNA-1:exon:18780;Parent=Msa0032930-mRNA-1
chr1_1 exon 60090857 60090920 60090857 ID=Msa0032930-mRNA-1:exon:18781;Parent=Msa0032930-mRNA-1
chr1_1 exon 60091001 60091070 60091001 ID=Msa0032930-mRNA-1:exon:18782;Parent=Msa0032930-mRNA-1
chr1_1 exon 60091453 60091558 60091453 ID=Msa0032930-mRNA-1:exon:18783;Parent=Msa0032930-mRNA-1
chr1_1 exon 60091725 60091976 60091725 ID=Msa0032930-mRNA-1:exon:18784;Parent=Msa0032930-mRNA-1
chr1_1 five_prime_UTR 60085343 60085754 60085343 ID=Msa0032930-mRNA-1:five_prime_utr;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60085755 60085900 60085755 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60086309 60086396 60086309 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60087632 60087799 60087632 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60088381 60088488 60088381 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60088585 60088644 60088585 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60088797 60088886 60088797 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60090065 60090196 60090065 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60090325 60090469 60090325 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60090538 60090711 60090538 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60090857 60090920 60090857 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60091001 60091070 60091001 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60091453 60091558 60091453 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 CDS 60091725 60091816 60091725 ID=Msa0032930-mRNA-1:cds;Parent=Msa0032930-mRNA-1
chr1_1 three_prime_UTR 60091817 60091976 60091817 ID=Msa0032930-mRNA-1:three_prime_utr;Parent=Msa0032930-mRNA-1
Gene Sequence

>Msa0032930

ATGTCAGGTTCATCAGCTGCAGGTAGAGGAGGAAATGGAAGTAGTAGTGATGTACCAGTACCTGATCCTCAACCTTTTTCCATTCCTCACTTGTTTGTTTGGCCTCATGGAGGTGAAACCGCGTTTCTATGCGGTTCTTTCACAGGATGGTCAACAAATTTACCAATGTCTCGAATTGAAGGCCGCCCGACTGGATTTCAAGTTGTTTGCTACTTGACTCCAGGATTTCATACGTATCAGTTTTGTGTGGATGGTGTGTGGCGGCATGATGAGCAGCAGCCATTTATAAACGGGTTCACCGCCACAGTGAACACTATTTCGGTGGCAGAACCATATATGTTACATGGGATGCCTAGTAGATCCCATCTGCAGCTTGAAAATATTAATGTCACTAGACACATGGGAGTTTTTCCTAGGACACCAGAGTTTGCTCTGCATGTCTCGCGCTATCACATATATAAATTTATGTCATCGAATACTGCTTCTCATTTGCTTCCGGAGTCTGGCAAGGTATTTGTCTTGAATATAGATTTATCACTTCAGCAAGCATTGCATATTCTATATGAACAGGAAGTATCTTTGGCTCCTGTGTGGGATTCTAGGAAGTGCAAGTTTGTTGGAGTGCTTAGTGCACCGGACATTATTCAAGCACTGAAAGAGCCGGAGAGTCATCGATCCACTTTTACTGATGAAGGACTTGAGAAACATACTTTAGCAGCATGGATAGAGAGAAAATTACAGCAATGTGGAACTGATAGTAATGGGAAAGCATATCCTTGGAGTTTTGTTGATGCTAGGCCTTTTGAGAGACTAGAAGACATCGCTTTAAAATTTTTGCAATGCAAGGTGCCAGTAGTTGCTATTATGCATTCTTCTTCCGAGGACAGCTCAACTCCTCAGCTGCTACATATGACTTCTCGCTCAGAAATACTAAAATGTATATGCAAGCGTTTCAAGAACGATTATGGTTCTTTGCCGGTTCTTCAAATACCGATTGGTTCAATACCTTTGGGTAGATGGGCGCCAAAAGTGGGGGAATCCAATAAACAGCCAATTGCAACGCTAAGGCCAAATGCTTCTCTTAGTGCTGCTATCGCTCTAATGAATCAAGCTGAAGTTAGCTCAATACCAATTGTGGATGATTCTGGTTCATTATATGATGTATATTCAAGAAGTGATCTTACTGCATTGGCTAGATGTGAAATGTATGCTAGGATAAGCCTGGATAATTTTAGTATCTCTCAGGCATTGAATTTGAGACAAATTGGAAAATGTCCTTACGGACTTATACTTCCAACGTGTTTGAGGTCCGATCCATTGCATGTGGTGATGGAACGCTTTGCTAATTCTGGTGTTGGAGAAGTTGTGGTGGTGAAGTCTGCCTGCAGGAGTGTGCAAGGGATCATTTCCATAGGTGATGTGTTCAAATTATTGTTGGGTTAG

Protein sequence

>Msa0032930

MSGSSAAGRGGNGSSSDVPVPDPQPFSIPHLFVWPHGGETAFLCGSFTGWSTNLPMSRIEGRPTGFQVVCYLTPGFHTYQFCVDGVWRHDEQQPFINGFTATVNTISVAEPYMLHGMPSRSHLQLENINVTRHMGVFPRTPEFALHVSRYHIYKFMSSNTASHLLPESGKVFVLNIDLSLQQALHILYEQEVSLAPVWDSRKCKFVGVLSAPDIIQALKEPESHRSTFTDEGLEKHTLAAWIERKLQQCGTDSNGKAYPWSFVDARPFERLEDIALKFLQCKVPVVAIMHSSSEDSSTPQLLHMTSRSEILKCICKRFKNDYGSLPVLQIPIGSIPLGRWAPKVGESNKQPIATLRPNASLSAAIALMNQAEVSSIPIVDDSGSLYDVYSRSDLTALARCEMYARISLDNFSISQALNLRQIGKCPYGLILPTCLRSDPLHVVMERFANSGVGEVVVVKSACRSVQGIISIGDVFKLLLG*