AlfalfaGEDB | Msa1171640

M. sativa cultivar zhongmu-4 / Msa1171640

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF00004.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171640	XP_013460697.1	97.941	437	8	1	1	437	1	436	0.0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171640	sp\|Q7X999\|RCA2_LARTR	82.877	438	71	3	1	437	1	435	0.0	762

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1171640	0.855578	5.743952e-62	-8.615850e-47
Msa0000610	Msa1171640	0.845086	5.058087e-59	-8.615850e-47
Msa0001040	Msa1171640	0.855122	7.795766e-62	-8.615850e-47
Msa0001510	Msa1171640	0.897961	8.453688e-77	-8.615850e-47
Msa0001550	Msa1171640	0.804687	1.916491e-49	-8.615850e-47
Msa0002110	Msa1171640	0.897861	9.325653e-77	-8.615850e-47
Msa0002690	Msa1171640	0.957681	1.506746e-115	-8.615850e-47
Msa0002700	Msa1171640	0.956263	4.453623e-114	-8.615850e-47
Msa0003340	Msa1171640	0.852174	5.489192e-61	-8.615850e-47
Msa0003370	Msa1171640	0.812103	5.016012e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171640	MtrunA17_Chr3g0112121	97.941	437	8	1	1	437	1	436	0.0	885
Msa1171640	MtrunA17_Chr5g0435631	89.318	440	40	4	1	437	1	436	0.0	813
Msa1171640	MtrunA17_Chr4g0009431	83.105	438	72	2	1	437	1	437	0.0	756
Msa1171640	MtrunA17_Chr2g0334101	45.721	409	198	13	25	420	17	414	7.30e-111	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171640	AT2G39730.2	80.137	438	83	2	1	437	1	435	0.0	730
Msa1171640	AT2G39730.3	80.137	438	83	2	1	437	1	435	0.0	729
Msa1171640	AT2G39730.1	80.137	438	83	2	1	437	1	435	0.0	729
Msa1171640	AT1G73110.2	54.636	302	130	6	125	420	31	331	3.50e-114	338
Msa1171640	AT1G73110.1	54.636	302	130	6	125	420	128	428	1.13e-112	338

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Find 134 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCTTGTGAACTCAA+AGG	0.613555	8_1:+1467570	Msa1171640:CDS
AAAGCTGAATTAGAAACTGT+TGG	0.560874	8_1:-1465624	None:intergenic
AAATTTACATACCTTGATGT+TGG	0.464290	8_1:-1466103	None:intergenic
AACAGACCGACGGAGACAGA+TGG	0.601295	8_1:+1465748	Msa1171640:CDS
AACATTCTCAATGTGTTATT+AGG	0.258499	8_1:+1467961	Msa1171640:three_prime_UTR
AACGATCTCGATGCAGGAGC+AGG	0.497933	8_1:+1467056	Msa1171640:CDS
AACTCACTTGATTCCCATCT+TGG	0.355485	8_1:-1466279	None:intergenic
AACTTTGACAACACTATGGA+TGG	0.466779	8_1:+1466012	Msa1171640:CDS
AAGATTGTTGACACCTTCCC+TGG	0.404593	8_1:+1467368	Msa1171640:CDS
AAGCTTGTGAACTCAAAGGA+AGG	0.624377	8_1:+1467574	Msa1171640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCAGCTAAGTATCACAT+AGG	-	chr8_1:1464893-1464912	None:intergenic	30.0%
GTGATACTTAGCTGATATAT+AGG	+	chr8_1:1464895-1464914	Msa1171640:intron	30.0%
AACTAATCACCCTTCTAATA+TGG	-	chr8_1:1464997-1465016	None:intergenic	30.0%
ATATTCAAGACCGTTTGAAT+CGG	+	chr8_1:1465061-1465080	Msa1171640:intron	30.0%
ATAAGCTCTCTCAAATACTT+AGG	-	chr8_1:1465109-1465128	None:intergenic	30.0%
TTTCTATATACGGATCTGTT+TGG	-	chr8_1:1465324-1465343	None:intergenic	30.0%
AGTAATAGATTTCAAGGAGT+TGG	+	chr8_1:1465372-1465391	Msa1171640:intron	30.0%
GATAAGTAAGTAAAAAGAGG+GGG	+	chr8_1:1465511-1465530	Msa1171640:intron	30.0%
AAAGCTGAATTAGAAACTGT+TGG	-	chr8_1:1465627-1465646	None:intergenic	30.0%
GTTTCTAATTCAGCTTTCTT+CGG	+	chr8_1:1465630-1465649	Msa1171640:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	1464631	1468297	1464631	ID=Msa1171640;Name=Msa1171640
chr8_1	mRNA	1464631	1468297	1464631	ID=Msa1171640-mRNA-1;Parent=Msa1171640;Name=Msa1171640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=68\|1\|1\|1\|0.83\|0.71\|7\|436\|437
chr8_1	exon	1464631	1464740	1464631	ID=Msa1171640-mRNA-1:exon:430;Parent=Msa1171640-mRNA-1
chr8_1	exon	1465594	1465919	1465594	ID=Msa1171640-mRNA-1:exon:431;Parent=Msa1171640-mRNA-1
chr8_1	exon	1466008	1466113	1466008	ID=Msa1171640-mRNA-1:exon:432;Parent=Msa1171640-mRNA-1
chr8_1	exon	1466209	1466294	1466209	ID=Msa1171640-mRNA-1:exon:433;Parent=Msa1171640-mRNA-1
chr8_1	exon	1466929	1467401	1466929	ID=Msa1171640-mRNA-1:exon:434;Parent=Msa1171640-mRNA-1
chr8_1	exon	1467488	1467788	1467488	ID=Msa1171640-mRNA-1:exon:435;Parent=Msa1171640-mRNA-1
chr8_1	exon	1467882	1468297	1467882	ID=Msa1171640-mRNA-1:exon:436;Parent=Msa1171640-mRNA-1
chr8_1	five_prime_UTR	1464631	1464698	1464631	ID=Msa1171640-mRNA-1:five_prime_utr;Parent=Msa1171640-mRNA-1
chr8_1	CDS	1464699	1464740	1464699	ID=Msa1171640-mRNA-1:cds;Parent=Msa1171640-mRNA-1
chr8_1	CDS	1465594	1465919	1465594	ID=Msa1171640-mRNA-1:cds;Parent=Msa1171640-mRNA-1
chr8_1	CDS	1466008	1466113	1466008	ID=Msa1171640-mRNA-1:cds;Parent=Msa1171640-mRNA-1
chr8_1	CDS	1466209	1466294	1466209	ID=Msa1171640-mRNA-1:cds;Parent=Msa1171640-mRNA-1
chr8_1	CDS	1466929	1467401	1466929	ID=Msa1171640-mRNA-1:cds;Parent=Msa1171640-mRNA-1
chr8_1	CDS	1467488	1467768	1467488	ID=Msa1171640-mRNA-1:cds;Parent=Msa1171640-mRNA-1
chr8_1	three_prime_UTR	1467769	1467788	1467769	ID=Msa1171640-mRNA-1:three_prime_utr;Parent=Msa1171640-mRNA-1
chr8_1	three_prime_UTR	1467882	1468297	1467882	ID=Msa1171640-mRNA-1:three_prime_utr;Parent=Msa1171640-mRNA-1

Gene Sequence

>Msa1171640

ATGGCTGCTTCAGTTTCAACTGTTGGAGCTGTCAAAACTCCAATGAGCTTGAATGGCTCAGTAGTATCTGGACCAACAGTTTCTAATTCAGCTTTCTTCGGAACAAGCTTGAAGAAGCTTACCGCAAGACTTCCAAACACAAAAGTTTCCTCAGGAAGCTTCAAAGTTTTTGCTGCTAAAGAGATCGATGACAGTAAACAGACCGACGGAGACAGATGGAGGGGTTTGGCCTATGATATTTCAGATGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAAACAGTACAACTTTGACAACACTATGGATGGATTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCCTACCCAACATCAAGGTTCCTCTCATTCTTGGAGTCTGGGGAGGCAAAGGACAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCCTCTGACATTATCAGGAAAGGAAAGATGTGTTGTCTGTTCATCAACGATCTCGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAATACACTGTCAACAACCAAATGGTGAATGCCACACTCATGAACATTGCTGATAACCCCACCAATGTCCAACTCCCTGGTATGTACAACAAGGAAGACAATGCTCGTGTGCCCATCATTGTCACCGGTAATGATTTCTCAACACTTTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCTACTAGAGAAGATCGTATTGGTGTCTGCATTGGAATTTTCCGCCATGACAATATCGCTAAAGATGACATTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATCGATTTCTTCGGTGCATTGAGGGCTAGAGTGTACGATGATGAAGTGAGGAAGTGGGTTTCTGGAGTTGGTATTGAAACAATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCACCAGTGTTTGAGCAGCCAAAGATGACACTAGAAAAGCTATTGGAGTATGGTAACATGCTTGTCTCAGAACAAGAGAATGTGAAGAGAGTCCAATTGGCAGACAAGTATTTGGAAGGTGCTGCTCTTGGTGATGCTAATCAAGATGCTATTAAGGAGGGAAAATTCTAG

Protein sequence

>Msa1171640

MAASVSTVGAVKTPMSLNGSVVSGPTVSNSAFFGTSLKKLTARLPNTKVSSGSFKVFAAKEIDDSKQTDGDRWRGLAYDISDDQQDITRGKGLVDSVFQAPQDAGTHYAVMSSYEYISTGLKQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLEGAALGDANQDAIKEGKF*