AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078280 MtrunA17_Chr7g0262841 95.455 572 26 0 242 813 8 579 0.0 1140
Msa1078280 MtrunA17_Chr2g0327991 39.317 791 457 7 14 797 50 824 0.0 543
Msa1078280 MtrunA17_Chr7g0262831 98.919 185 2 0 1 185 1 185 1.03e-124 372
Msa1078280 MtrunA17_Chr7g0244781 95.370 108 5 0 61 168 17 124 2.18e-62 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078280 AT3G09450.1 38.825 783 445 14 18 786 9 771 9.42e-170 510
Msa1078280 AT2G28780.1 36.207 812 477 13 14 811 10 794 1.09e-163 495

Find 169 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAAGATTTGTGGATTTA+AGG 0.118879 7_2:-77156477 Msa1078280:CDS
CTGAAATGGAGCCAAATTTC+TGG 0.203476 7_2:-77156051 Msa1078280:CDS
AATTTAATGTAACCCTTTAT+AGG 0.227954 7_2:+77160039 None:intergenic
AAATCTTGCAGTTTCTCTTC+TGG 0.237975 7_2:+77157096 None:intergenic
AAATAAAAGAACTACTTATA+TGG 0.256780 7_2:-77155523 Msa1078280:CDS
CGTCAACAAGTGTGTCGATT+TGG 0.272339 7_2:+77159807 None:intergenic
GCAATGTCCATCCCTCTTAT+TGG 0.275470 7_2:+77157066 None:intergenic
TTGAAGTTTGTTTGACTTGC+GGG 0.279387 7_2:+77155494 None:intergenic
TATAGTACCCCGACTCAATT+TGG 0.282417 7_2:-77156334 Msa1078280:CDS
ATATAGCCCTCAACCTATAA+AGG 0.287495 7_2:-77160052 Msa1078280:CDS
ACCTTAAATCCACAAATCTT+TGG 0.287928 7_2:+77156476 None:intergenic
AGTAGAATGTATGGGGAATC+TGG 0.291832 7_2:-77156406 Msa1078280:CDS
AATCTTGCAGTTTCTCTTCT+GGG 0.294105 7_2:+77157097 None:intergenic
AATGGTACGAACCAGAAATT+TGG 0.300415 7_2:+77156040 None:intergenic
TTATAGGTTGAGGGCTATAT+AGG 0.300994 7_2:+77160055 None:intergenic
AGAAGAGAAACTGCAAGATT+TGG 0.304292 7_2:-77157094 Msa1078280:CDS
GGGCAATTTCGACAGTTATA+GGG 0.304373 7_2:-77156384 Msa1078280:CDS
ATCTCAATGCAGACACATTT+AGG 0.311938 7_2:-77155733 Msa1078280:CDS
GGGGCAATTTCGACAGTTAT+AGG 0.317765 7_2:-77156385 Msa1078280:CDS
AGATACAATGTACATGTAAT+TGG 0.336823 7_2:+77155376 None:intergenic
ATGATAGGGATAATGCATAT+TGG 0.349199 7_2:-77156621 Msa1078280:CDS
TGGAGCTATAGCTTCTGTTC+TGG 0.352610 7_2:-77159674 Msa1078280:CDS
GAACAAAACATTTAGCTTGC+TGG 0.368168 7_2:+77156947 None:intergenic
CAAACGCTCGCTGAGCTTGT+TGG 0.371401 7_2:+77156732 None:intergenic
CATACAGTTGCCGAAGTTAT+CGG 0.375339 7_2:+77159873 None:intergenic
TCCTGTTGTGGAGAGGTACT+TGG 0.379008 7_2:+77157333 None:intergenic
GTCAACAAGTGTGTCGATTT+GGG 0.380204 7_2:+77159808 None:intergenic
AAGCATCTCCTCATCTTTGT+TGG 0.382037 7_2:+77155628 None:intergenic
CAATCTGCTTAATGCAATCT+TGG 0.385334 7_2:+77156188 None:intergenic
CCAGTGTAGTTGTGATACTA+TGG 0.386508 7_2:+77157299 None:intergenic
GCTAGAGTTGCAGCTCTTGA+GGG 0.389237 7_2:+77156244 None:intergenic
TCCTTGGTTTGATATATGAT+AGG 0.391420 7_2:-77156636 Msa1078280:CDS
ACCTTAGCATGCAGCATAGT+TGG 0.394869 7_2:-77160087 Msa1078280:CDS
CTGTATGGCTGCGCTGGCAG+TGG 0.396194 7_2:-77159857 Msa1078280:CDS
TTTAAGTCCTCTCTGTCATT+AGG 0.398749 7_2:-77156670 Msa1078280:CDS
TTAGGCTTTGCCGTGTTCCT+TGG 0.401857 7_2:-77156652 Msa1078280:CDS
CTCAGGCAAAGTAGAATGTA+TGG 0.402439 7_2:-77156415 Msa1078280:CDS
TGATAGGGATAATGCATATT+GGG 0.402750 7_2:-77156620 Msa1078280:CDS
TATAGGTTGAGGGCTATATA+GGG 0.405330 7_2:+77160056 None:intergenic
GAGTTCGAAATTATTGTTTG+AGG 0.406798 7_2:+77157132 None:intergenic
ATGTAACCCTTTATAGGTTG+AGG 0.416760 7_2:+77160045 None:intergenic
ATTTACAGCAGAAGCTGAAA+TGG 0.417428 7_2:-77156065 Msa1078280:CDS
GTGACGCCGTTAGAGGTTGT+TGG 0.421688 7_2:-77159960 Msa1078280:CDS
ACCACCTTCTTTAAAATGTC+AGG 0.424833 7_2:-77160177 Msa1078280:exon
ACACTTGGTGACGCCGTTAG+AGG 0.424878 7_2:-77159967 Msa1078280:CDS
TATTTCTCTCATCAAGCTAC+TGG 0.426451 7_2:+77155562 None:intergenic
AAAGATCAAGCTTTGGTGGC+TGG 0.427921 7_2:+77156696 None:intergenic
TCCTCATCAATAACACCAAC+AGG 0.430311 7_2:+77157021 None:intergenic
GTTGCAAACGCACGAGGAAC+AGG 0.431175 7_2:-77156544 Msa1078280:CDS
ATACAGTTGCCGAAGTTATC+GGG 0.436138 7_2:+77159874 None:intergenic
TGCTAGAGTTGCAGCTCTTG+AGG 0.437675 7_2:+77156243 None:intergenic
CGACACACTTGTTGACGAAA+AGG 0.437706 7_2:-77159801 Msa1078280:CDS
GCCAAGTACCTCTCCACAAC+AGG 0.438296 7_2:-77157334 Msa1078280:CDS
GAGCTTGTTGGAGCTACATT+GGG 0.441738 7_2:+77156744 None:intergenic
GACGACGTATCTCTTTCGTT+AGG 0.445242 7_2:+77156154 None:intergenic
TGCCCCAATATTGAAAAGCT+TGG 0.446043 7_2:-77155843 Msa1078280:CDS
TGAGTTGTGGTTGCATCAAA+AGG 0.447219 7_2:+77156925 None:intergenic
TGTAACCCTTTATAGGTTGA+GGG 0.455045 7_2:+77160046 None:intergenic
CGATAACTTCGGCAACTGTA+TGG 0.455133 7_2:-77159872 Msa1078280:CDS
TGCTGCCCCTGCCCTATCCT+CGG 0.456066 7_2:-77159645 Msa1078280:CDS
AATAAAAGAACTACTTATAT+GGG 0.456542 7_2:-77155522 Msa1078280:CDS
AAGATCAAGCTTTGGTGGCT+GGG 0.457294 7_2:+77156697 None:intergenic
TTGACGAAAAGGATTGCATA+TGG 0.458789 7_2:-77159790 Msa1078280:CDS
CCTTGGTTTGATATATGATA+GGG 0.460011 7_2:-77156635 Msa1078280:CDS
ATAGGGGCCTTGTTGATCCT+TGG 0.460671 7_2:-77156367 Msa1078280:CDS
TAGCAACTCCAAATTGAGTC+GGG 0.464180 7_2:+77156326 None:intergenic
CTGTAGCAGGTAGTATGAAA+TGG 0.464656 7_2:+77156022 None:intergenic
TCAATTTGGAGTTGCTAGAA+TGG 0.465771 7_2:-77156320 Msa1078280:CDS
GTGGCTTGTTCCACTGCACT+TGG 0.469029 7_2:-77159694 Msa1078280:CDS
TAAATGCAAAGATCAAGCTT+TGG 0.470566 7_2:+77156689 None:intergenic
TATAGCCCTCAACCTATAAA+GGG 0.471608 7_2:-77160051 Msa1078280:CDS
TACCTGCTACAGCAATATGC+TGG 0.475447 7_2:-77156011 Msa1078280:CDS
ACGACGTATCTCTTTCGTTA+GGG 0.475646 7_2:+77156155 None:intergenic
CGGCAACTGTATGGCTGCGC+TGG 0.476765 7_2:-77159863 Msa1078280:CDS
AATGGAGCATGTCTCACAAT+TGG 0.477649 7_2:-77155942 Msa1078280:CDS
ATGTATTCTCAATGTATAGT+TGG 0.481404 7_2:+77157431 None:intergenic
GGTTCTTAGCTCTTATACCA+TGG 0.486589 7_2:-77156456 Msa1078280:CDS
GTAGAATGTATGGGGAATCT+GGG 0.489062 7_2:-77156405 Msa1078280:CDS
GATTTGGAAATACCAATAAG+AGG 0.489960 7_2:-77157078 Msa1078280:CDS
CAACATCTAGAGGAAATTGC+TGG 0.490184 7_2:-77155662 Msa1078280:CDS
TGAGCTTGTTGGAGCTACAT+TGG 0.496289 7_2:+77156743 None:intergenic
TGAGTTGTCTGAGGCTGAGA+TGG 0.496938 7_2:+77157381 None:intergenic
AGTGGCTACCGGTGCATTTG+TGG 0.499348 7_2:-77159839 Msa1078280:CDS
ATGCAAAGATCAAGCTTTGG+TGG 0.499399 7_2:+77156692 None:intergenic
TTGTTTCATTTCTTGAGTTG+TGG 0.500153 7_2:+77156912 None:intergenic
ATGTAAGCAAACCGAGGATA+GGG 0.500818 7_2:+77159634 None:intergenic
TATGAGAATTGTTGTGACAT+AGG 0.502472 7_2:+77160005 None:intergenic
ACAAACAGGATGGCATGCAT+TGG 0.502802 7_2:-77157161 Msa1078280:intron
AGAATGGCAGAGGCTACAAT+AGG 0.502981 7_2:-77156304 Msa1078280:CDS
GATATTGAACAGAGATGAAG+AGG 0.505008 7_2:-77155711 Msa1078280:CDS
TCCTCGGTTTGCTTACATTG+AGG 0.507319 7_2:-77159629 Msa1078280:intron
CAGCAATTTCCTCTAGATGT+TGG 0.511945 7_2:+77155663 None:intergenic
TTTGAAGTTTGTTTGACTTG+CGG 0.514256 7_2:+77155493 None:intergenic
TCCCAGCATATTGCTGTAGC+AGG 0.515445 7_2:+77156009 None:intergenic
GAGATTAAGTTGCAATATAG+AGG 0.518122 7_2:-77157404 Msa1078280:CDS
CAAACAGGATGGCATGCATT+GGG 0.519234 7_2:-77157160 Msa1078280:intron
ACGAGGAACAGGAACAGCTA+TGG 0.522977 7_2:-77156533 Msa1078280:CDS
AATGTAAGCAAACCGAGGAT+AGG 0.523686 7_2:+77159633 None:intergenic
ACAGCTATGGGATCAATCTA+CGG 0.523889 7_2:-77156520 Msa1078280:CDS
CAATTTCCTCTAGATGTTGG+AGG 0.527126 7_2:+77155666 None:intergenic
TGGATGGATATTCAAGGTCA+AGG 0.528602 7_2:-77155899 Msa1078280:CDS
TCAGACAACTCAACTGCTGT+TGG 0.529606 7_2:-77157370 Msa1078280:CDS
TCCTGTTGGTGTTATTGATG+AGG 0.529816 7_2:-77157022 Msa1078280:CDS
ATTGCAATTAGTTTCGTGAC+TGG 0.533410 7_2:-77156586 Msa1078280:CDS
CTCTTTCCTCCAACATCTAG+AGG 0.537612 7_2:-77155672 Msa1078280:CDS
GTTCTTAGCTCTTATACCAT+GGG 0.540055 7_2:-77156455 Msa1078280:CDS
ATAGGGCAGGGGCAGCAACA+TGG 0.541183 7_2:+77159651 None:intergenic
CGAGGAACAGGAACAGCTAT+GGG 0.541244 7_2:-77156532 Msa1078280:CDS
GAGAAGCTTGGCTCCTGTTG+TGG 0.542438 7_2:+77157321 None:intergenic
GGCAATTTCGACAGTTATAG+GGG 0.544984 7_2:-77156383 Msa1078280:CDS
TGTGATACTATGGAGAAGCT+TGG 0.546804 7_2:+77157309 None:intergenic
GAGTTGTTTCGAACTCGTCT+TGG 0.547127 7_2:-77160126 Msa1078280:CDS
CTAGAGTTGCAGCTCTTGAG+GGG 0.547420 7_2:+77156245 None:intergenic
GCAATCTTGGAGTGTTCTGA+AGG 0.547626 7_2:+77156201 None:intergenic
TCAGGCAAAGTAGAATGTAT+GGG 0.550366 7_2:-77156414 Msa1078280:CDS
ACCAACTATGCTGCATGCTA+AGG 0.552023 7_2:+77160086 None:intergenic
GTAATTTGGATGGATATTCA+AGG 0.552135 7_2:-77155905 Msa1078280:CDS
ATATGCTGGGATCTCTATCA+AGG 0.556800 7_2:-77155997 Msa1078280:CDS
AAAAGATGGAGTAATTTGGA+TGG 0.561145 7_2:-77155915 Msa1078280:CDS
AAGCAAACCGAGGATAGGGC+AGG 0.561371 7_2:+77159638 None:intergenic
CAGCTATGGGATCAATCTAC+GGG 0.561809 7_2:-77156519 Msa1078280:CDS
AGGGATAATGCATATTGGGC+GGG 0.562602 7_2:-77156616 Msa1078280:CDS
TGGAGTTGCTAGAATGGCAG+AGG 0.563730 7_2:-77156314 Msa1078280:CDS
GGATGGATATTCAAGGTCAA+GGG 0.566079 7_2:-77155898 Msa1078280:CDS
GGGCCTTGTTGATCCTTGGT+AGG 0.569678 7_2:-77156363 Msa1078280:CDS
CTAGCAACTCCAAATTGAGT+CGG 0.575057 7_2:+77156325 None:intergenic
ACCTGCTACAGCAATATGCT+GGG 0.575756 7_2:-77156010 Msa1078280:CDS
CGACGTATCTCTTTCGTTAG+GGG 0.576170 7_2:+77156156 None:intergenic
GTTATACATGGTGCACAAGA+AGG 0.578194 7_2:-77159739 Msa1078280:CDS
GTTGTGACATAGGAAATAGA+TGG 0.579686 7_2:+77160015 None:intergenic
ATTCTCATAGTGTTGTCTGA+TGG 0.580392 7_2:-77159991 Msa1078280:CDS
TAGATTTACTATGTTTGCAG+AGG 0.581958 7_2:+77155449 None:intergenic
AACATGCCAACAACCTCTAA+CGG 0.582906 7_2:+77159954 None:intergenic
TTGAAATAGACAAGTCATCT+CGG 0.590293 7_2:+77156812 None:intergenic
AGCAAACCGAGGATAGGGCA+GGG 0.590590 7_2:+77159639 None:intergenic
GCAAACCGAGGATAGGGCAG+GGG 0.590989 7_2:+77159640 None:intergenic
ATTTGGAAATACCAATAAGA+GGG 0.595637 7_2:-77157077 Msa1078280:CDS
CAGCGCCACCACAAATGCAC+CGG 0.599257 7_2:+77159831 None:intergenic
AGCTATAGCTCCAAGTGCAG+TGG 0.600339 7_2:+77159684 None:intergenic
GGAAATACCAATAAGAGGGA+TGG 0.600471 7_2:-77157073 Msa1078280:CDS
TCTTTCGTTAGGGGTAGTCA+TGG 0.603069 7_2:+77156165 None:intergenic
TGAAGTTTGTTTGACTTGCG+GGG 0.604383 7_2:+77155495 None:intergenic
GCGTTTGCAACTGAGAATGT+TGG 0.613666 7_2:+77156556 None:intergenic
CCCTATCATATATCAAACCA+AGG 0.614752 7_2:+77156635 None:intergenic
GTTATACGACCCGATAACTT+CGG 0.617939 7_2:-77159883 Msa1078280:CDS
TACTATAGTTCTTCCTACCA+AGG 0.620979 7_2:+77156350 None:intergenic
CCATAGTATCACAACTACAC+TGG 0.621214 7_2:-77157299 Msa1078280:intron
TATGTCAGCACAGTTATACA+TGG 0.621877 7_2:-77159751 Msa1078280:CDS
CAGGCAAAGTAGAATGTATG+GGG 0.624002 7_2:-77156413 Msa1078280:CDS
GGCTACCGGTGCATTTGTGG+TGG 0.628149 7_2:-77159836 Msa1078280:CDS
GGCTACGCATTCAATTCATG+TGG 0.631946 7_2:-77159713 Msa1078280:CDS
AACTCTTACCAACAAAGATG+AGG 0.633114 7_2:-77155636 Msa1078280:CDS
TCTTGTGACTCGAGATCGTG+AGG 0.636201 7_2:+77155758 None:intergenic
GCTTGGCTCCTGTTGTGGAG+AGG 0.637405 7_2:+77157326 None:intergenic
ACATGGTGCACAAGAAGGAG+TGG 0.641976 7_2:-77159734 Msa1078280:CDS
TTCTCAGTTGCAAACGCACG+AGG 0.643217 7_2:-77156550 Msa1078280:CDS
GTTATTGATGAGGAGCTAAG+AGG 0.643274 7_2:-77157012 Msa1078280:CDS
ATGGACATTGCTCTATCGAG+TGG 0.643627 7_2:-77157054 Msa1078280:CDS
AAAGAAGAGAAAATGACCCA+TGG 0.647913 7_2:+77156439 None:intergenic
TAGGGATAATGCATATTGGG+CGG 0.652201 7_2:-77156617 Msa1078280:CDS
ATATATCAAACCAAGGAACA+CGG 0.652287 7_2:+77156642 None:intergenic
AACAGCAGTTGAGTTGTCTG+AGG 0.659969 7_2:+77157372 None:intergenic
GCTGGGATCTCTATCAAGGA+CGG 0.660564 7_2:-77155993 Msa1078280:CDS
CTTCCTACCAAGGATCAACA+AGG 0.665051 7_2:+77156360 None:intergenic
TAGAATGTATGGGGAATCTG+GGG 0.673349 7_2:-77156404 Msa1078280:CDS
AGCAACTCCAAATTGAGTCG+GGG 0.676322 7_2:+77156327 None:intergenic
GTGTTGTCTGATGGAACACT+TGG 0.689623 7_2:-77159982 Msa1078280:CDS
ACCTCAATGTAAGCAAACCG+AGG 0.693462 7_2:+77159628 None:intergenic
GGCAAAGCCTAATGACAGAG+AGG 0.719901 7_2:+77156663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACACAAAAAAAAAAAAAA+AGG + chr7_2:77156261-77156280 None:intergenic 10.0%
!!! AAATAATACCTTTAAAAAAA+AGG - chr7_2:77156669-77156688 Msa1078280:CDS 10.0%
!!! AATAATACCTTTAAAAAAAA+GGG - chr7_2:77156670-77156689 Msa1078280:CDS 10.0%
!!! TATTTTACAAAAATTATTGA+AGG + chr7_2:77156866-77156885 None:intergenic 10.0%
!!! ATTCATTTTAATGATTAAAT+TGG + chr7_2:77156898-77156917 None:intergenic 10.0%
!! TATATTTAAAAACTTAAATC+TGG - chr7_2:77156998-77157017 Msa1078280:CDS 10.0%
!!! TTTTTTTTTTTTAAACAAAC+AGG - chr7_2:77158274-77158293 Msa1078280:intron 10.0%
!!! TTATAATTTTTTTTTATCAG+AGG - chr7_2:77160095-77160114 Msa1078280:CDS 10.0%
!!! TTTTTTTTTTTTTGTTGAAG+TGG - chr7_2:77155912-77155931 Msa1078280:CDS 15.0%
!!! AAAAAAAAGTTTTTTTGAAC+AGG + chr7_2:77156065-77156084 None:intergenic 15.0%
!! ATTGAATAAAAATGATCTTA+TGG + chr7_2:77156187-77156206 None:intergenic 15.0%
!!! ATAATACCTTTAAAAAAAAG+GGG - chr7_2:77156671-77156690 Msa1078280:CDS 15.0%
!!! TAGATTTAATTTGAGAAAAT+AGG - chr7_2:77157507-77157526 Msa1078280:intron 15.0%
!! AAATAAAAGAACTACTTATA+TGG - chr7_2:77159926-77159945 Msa1078280:CDS 15.0%
!! AATAAAAGAACTACTTATAT+GGG - chr7_2:77159927-77159946 Msa1078280:CDS 15.0%
!!! AAGTATTGATTTTTCATTTT+TGG + chr7_2:77160193-77160212 None:intergenic 15.0%
!! AATTTAATGTAACCCTTTAT+AGG + chr7_2:77155413-77155432 None:intergenic 20.0%
!!! AATCACAATTTAGAATAAAC+AGG - chr7_2:77155957-77155976 Msa1078280:CDS 20.0%
!! TTAAAATGAGAAGCTATTTA+CGG - chr7_2:77156153-77156172 Msa1078280:CDS 20.0%
!!! ATTATTGCTATTGTTATGAT+CGG - chr7_2:77156538-77156557 Msa1078280:CDS 20.0%
!!! TAATACCTTTAAAAAAAAGG+GGG - chr7_2:77156672-77156691 Msa1078280:CDS 20.0%
!!! AAAAACTTAAATCTGGAATT+TGG - chr7_2:77157005-77157024 Msa1078280:CDS 20.0%
!!! TTAGTTGGATTGATTTTAAT+CGG + chr7_2:77157213-77157232 None:intergenic 20.0%
!!! AAAATCTTTGTTTTTTTGAC+CGG - chr7_2:77157291-77157310 Msa1078280:intron 20.0%
!!! TAAGATTTTTTCTTACTTTC+CGG + chr7_2:77157313-77157332 None:intergenic 20.0%
!! CAATGCCTAATATAATAATT+TGG + chr7_2:77157353-77157372 None:intergenic 20.0%
!! AATTGAATGTATCTAAAAAG+TGG - chr7_2:77157708-77157727 Msa1078280:intron 20.0%
!!! TTTTTACTTATATTAGTGAC+CGG - chr7_2:77157732-77157751 Msa1078280:intron 20.0%
!! TAAATGACATAACACATTAT+TGG + chr7_2:77157874-77157893 None:intergenic 20.0%
!!! AAAGTGTGTTTTTAATATCT+TGG + chr7_2:77157964-77157983 None:intergenic 20.0%
!!! TTTTTTTTAAACAAACAGGA+TGG - chr7_2:77158278-77158297 Msa1078280:intron 20.0%
!! AGTATAAAAAGAATGATGTT+GGG + chr7_2:77158604-77158623 None:intergenic 20.0%
!!! AAAAGTTAGATTTTAGAGTT+GGG + chr7_2:77160163-77160182 None:intergenic 20.0%
! AGAAAAAATCATAACCTGAA+TGG + chr7_2:77155531-77155550 None:intergenic 25.0%
! TTTATGACACTTTCAAAATG+TGG - chr7_2:77156646-77156665 Msa1078280:CDS 25.0%
!!! TTATTCCCCCTTTTTTTTAA+AGG + chr7_2:77156680-77156699 None:intergenic 25.0%
! AGGGGGAATAATAATATATT+TGG - chr7_2:77156689-77156708 Msa1078280:CDS 25.0%
! TCAATCATAAAGATGTTGAT+TGG + chr7_2:77156754-77156773 None:intergenic 25.0%
! AATTATGTCAATTCAAACGT+TGG + chr7_2:77156958-77156977 None:intergenic 25.0%
! GAATTATTATGCTAAGTGAT+GGG + chr7_2:77157163-77157182 None:intergenic 25.0%
! AGAAACAAATTGACATTAGT+TGG + chr7_2:77157228-77157247 None:intergenic 25.0%
! TTACTTGCATCAAATTATAC+AGG + chr7_2:77157269-77157288 None:intergenic 25.0%
! CGCAACCAAATTATTATATT+AGG - chr7_2:77157345-77157364 Msa1078280:CDS 25.0%
! AACTTCTGTAATACTATATG+TGG + chr7_2:77157428-77157447 None:intergenic 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + chr7_2:77157623-77157642 None:intergenic 25.0%
!! AAATAGCTTTGCATGTTTAA+TGG + chr7_2:77157840-77157859 None:intergenic 25.0%
! ATGTATTCTCAATGTATAGT+TGG + chr7_2:77158021-77158040 None:intergenic 25.0%
! ATTTGGAAATACCAATAAGA+GGG - chr7_2:77158372-77158391 Msa1078280:intron 25.0%
! CAGTATAAAAAGAATGATGT+TGG + chr7_2:77158605-77158624 None:intergenic 25.0%
!!! TTTTATTTCACTCTCAATCT+TGG + chr7_2:77159914-77159933 None:intergenic 25.0%
! TCAAAAATGACTCAAATAAG+AGG - chr7_2:77160032-77160051 Msa1078280:CDS 25.0%
! AGATACAATGTACATGTAAT+TGG + chr7_2:77160076-77160095 None:intergenic 25.0%
!!! CAAAAGTTAGATTTTAGAGT+TGG + chr7_2:77160164-77160183 None:intergenic 25.0%
! TGAAAAATCAATACTTGATG+TGG - chr7_2:77160197-77160216 Msa1078280:five_prime_UTR 25.0%
!! TGTTCCTGACATTTTAAAGA+AGG + chr7_2:77155279-77155298 None:intergenic 30.0%
CAACAACAATTGCAAAAACA+AGG - chr7_2:77155297-77155316 Msa1078280:three_prime_UTR 30.0%
TATGAGAATTGTTGTGACAT+AGG + chr7_2:77155447-77155466 None:intergenic 30.0%
! TTTTTGTTGAAGTGGATACA+TGG - chr7_2:77155920-77155939 Msa1078280:CDS 30.0%
GAAGCAAATTAAGTGATCTT+AGG - chr7_2:77156011-77156030 Msa1078280:CDS 30.0%
! GACTATCAGTTATTTCGATT+GGG + chr7_2:77156492-77156511 None:intergenic 30.0%
! TGACTATCAGTTATTTCGAT+TGG + chr7_2:77156493-77156512 None:intergenic 30.0%
TAATATAGTTCCAAAACTCC+AGG - chr7_2:77156714-77156733 Msa1078280:CDS 30.0%
! ACTTAAATCTGGAATTTGGA+TGG - chr7_2:77157009-77157028 Msa1078280:CDS 30.0%
GTCTTGTGAAAATGCTTTAT+TGG + chr7_2:77157064-77157083 None:intergenic 30.0%
TGCAAATATACACAAACACT+TGG + chr7_2:77157113-77157132 None:intergenic 30.0%
CGAATTATTATGCTAAGTGA+TGG + chr7_2:77157164-77157183 None:intergenic 30.0%
ATATCATATCATTGAAGTGG+GGG + chr7_2:77157582-77157601 None:intergenic 30.0%
CATATCATATCATTGAAGTG+GGG + chr7_2:77157583-77157602 None:intergenic 30.0%
CCATATCATATCATTGAAGT+GGG + chr7_2:77157584-77157603 None:intergenic 30.0%
TCCATATCATATCATTGAAG+TGG + chr7_2:77157585-77157604 None:intergenic 30.0%
! GAGATTAAGTTGCAATATAG+AGG - chr7_2:77158045-77158064 Msa1078280:intron 30.0%
GAACTTGAATGCAATGATTT+AGG + chr7_2:77158190-77158209 None:intergenic 30.0%
GAGTTCGAAATTATTGTTTG+AGG + chr7_2:77158320-77158339 None:intergenic 30.0%
GATTTGGAAATACCAATAAG+AGG - chr7_2:77158371-77158390 Msa1078280:intron 30.0%
! TTGTTTCATTTCTTGAGTTG+TGG + chr7_2:77158540-77158559 None:intergenic 30.0%
TTGAAATAGACAAGTCATCT+CGG + chr7_2:77158640-77158659 None:intergenic 30.0%
TAAATGCAAAGATCAAGCTT+TGG + chr7_2:77158763-77158782 None:intergenic 30.0%
ATATATCAAACCAAGGAACA+CGG + chr7_2:77158810-77158829 None:intergenic 30.0%
! TCCTTGGTTTGATATATGAT+AGG - chr7_2:77158813-77158832 Msa1078280:intron 30.0%
! CCTTGGTTTGATATATGATA+GGG - chr7_2:77158814-77158833 Msa1078280:intron 30.0%
ATGATAGGGATAATGCATAT+TGG - chr7_2:77158828-77158847 Msa1078280:intron 30.0%
TGATAGGGATAATGCATATT+GGG - chr7_2:77158829-77158848 Msa1078280:intron 30.0%
! CTTCATTTTCCAAAGATTTG+TGG - chr7_2:77158964-77158983 Msa1078280:intron 30.0%
TCCAAAGATTTGTGGATTTA+AGG - chr7_2:77158972-77158991 Msa1078280:intron 30.0%
ACCTTAAATCCACAAATCTT+TGG + chr7_2:77158976-77158995 None:intergenic 30.0%
! TCATTTTCTCTTCTTTTCTC+AGG - chr7_2:77159017-77159036 Msa1078280:intron 30.0%
CACAAAAAGATGGAGTAATT+TGG - chr7_2:77159530-77159549 Msa1078280:intron 30.0%
AAAAGATGGAGTAATTTGGA+TGG - chr7_2:77159534-77159553 Msa1078280:intron 30.0%
GTAATTTGGATGGATATTCA+AGG - chr7_2:77159544-77159563 Msa1078280:intron 30.0%
! TTCCAAGCTTTTCAATATTG+GGG + chr7_2:77159611-77159630 None:intergenic 30.0%
! CTTCCAAGCTTTTCAATATT+GGG + chr7_2:77159612-77159631 None:intergenic 30.0%
! TCTTCCAAGCTTTTCAATAT+TGG + chr7_2:77159613-77159632 None:intergenic 30.0%
!! TTTGAAGTTTGTTTGACTTG+CGG + chr7_2:77159959-77159978 None:intergenic 30.0%
TAGATTTACTATGTTTGCAG+AGG + chr7_2:77160003-77160022 None:intergenic 30.0%
!! TTAAAGAAGGTGGTGGTTTT+AGG + chr7_2:77155266-77155285 None:intergenic 35.0%
!! TGACATTTTAAAGAAGGTGG+TGG + chr7_2:77155273-77155292 None:intergenic 35.0%
!! ACCACCTTCTTTAAAATGTC+AGG - chr7_2:77155272-77155291 Msa1078280:three_prime_UTR 35.0%
!! TCCTGACATTTTAAAGAAGG+TGG + chr7_2:77155276-77155295 None:intergenic 35.0%
! TATAGGTTGAGGGCTATATA+GGG + chr7_2:77155396-77155415 None:intergenic 35.0%
! TTATAGGTTGAGGGCTATAT+AGG + chr7_2:77155397-77155416 None:intergenic 35.0%
ATATAGCCCTCAACCTATAA+AGG - chr7_2:77155397-77155416 Msa1078280:three_prime_UTR 35.0%
TATAGCCCTCAACCTATAAA+GGG - chr7_2:77155398-77155417 Msa1078280:three_prime_UTR 35.0%
! TGTAACCCTTTATAGGTTGA+GGG + chr7_2:77155406-77155425 None:intergenic 35.0%
ATGTAACCCTTTATAGGTTG+AGG + chr7_2:77155407-77155426 None:intergenic 35.0%
GTTGTGACATAGGAAATAGA+TGG + chr7_2:77155437-77155456 None:intergenic 35.0%
ATTCTCATAGTGTTGTCTGA+TGG - chr7_2:77155458-77155477 Msa1078280:CDS 35.0%
! AGGTTGTTGGCATGTTTTAT+TGG - chr7_2:77155502-77155521 Msa1078280:CDS 35.0%
!! TGTTTTATTGGCAACCATTC+AGG - chr7_2:77155514-77155533 Msa1078280:CDS 35.0%
TTGACGAAAAGGATTGCATA+TGG - chr7_2:77155659-77155678 Msa1078280:CDS 35.0%
TATGTCAGCACAGTTATACA+TGG - chr7_2:77155698-77155717 Msa1078280:CDS 35.0%
! TCAGTTATTTCGATTGGGTA+TGG + chr7_2:77156487-77156506 None:intergenic 35.0%
TGCATGAAGAGAAAGACATT+TGG - chr7_2:77157129-77157148 Msa1078280:CDS 35.0%
CCCACTTCAATGATATGATA+TGG - chr7_2:77157581-77157600 Msa1078280:intron 35.0%
TGGAAAAAAAATACACCCTC+CGG - chr7_2:77157601-77157620 Msa1078280:intron 35.0%
TTACTTATATTAGTGACCGG+AGG - chr7_2:77157735-77157754 Msa1078280:intron 35.0%
TACTTATATTAGTGACCGGA+GGG - chr7_2:77157736-77157755 Msa1078280:intron 35.0%
!!! TTGCACATTGTCTTGTTTTC+AGG - chr7_2:77157982-77158001 Msa1078280:intron 35.0%
TTAGTTTATTCGCAACTGCT+AGG + chr7_2:77158242-77158261 None:intergenic 35.0%
AATCTTGCAGTTTCTCTTCT+GGG + chr7_2:77158355-77158374 None:intergenic 35.0%
AAATCTTGCAGTTTCTCTTC+TGG + chr7_2:77158356-77158375 None:intergenic 35.0%
AGAAGAGAAACTGCAAGATT+TGG - chr7_2:77158355-77158374 Msa1078280:intron 35.0%
!!! TAGCTTGCTGGTCTAATTTT+TGG + chr7_2:77158493-77158512 None:intergenic 35.0%
!! GAACAAAACATTTAGCTTGC+TGG + chr7_2:77158505-77158524 None:intergenic 35.0%
! GATTTTTGTAGGCTATGGAT+GGG + chr7_2:77158580-77158599 None:intergenic 35.0%
! AGATTTTTGTAGGCTATGGA+TGG + chr7_2:77158581-77158600 None:intergenic 35.0%
! TGATGTTGGGAGATTTTTGT+AGG + chr7_2:77158591-77158610 None:intergenic 35.0%
TTTAAGTCCTCTCTGTCATT+AGG - chr7_2:77158779-77158798 Msa1078280:intron 35.0%
CCCTATCATATATCAAACCA+AGG + chr7_2:77158817-77158836 None:intergenic 35.0%
! ATTGCAATTAGTTTCGTGAC+TGG - chr7_2:77158863-77158882 Msa1078280:intron 35.0%
! GTTCTTAGCTCTTATACCAT+GGG - chr7_2:77158994-77159013 Msa1078280:intron 35.0%
AAAGAAGAGAAAATGACCCA+TGG + chr7_2:77159013-77159032 None:intergenic 35.0%
TCAGGCAAAGTAGAATGTAT+GGG - chr7_2:77159035-77159054 Msa1078280:intron 35.0%
TACTATAGTTCTTCCTACCA+AGG + chr7_2:77159102-77159121 None:intergenic 35.0%
! TCAATTTGGAGTTGCTAGAA+TGG - chr7_2:77159129-77159148 Msa1078280:intron 35.0%
CAATCTGCTTAATGCAATCT+TGG + chr7_2:77159264-77159283 None:intergenic 35.0%
ATTTACAGCAGAAGCTGAAA+TGG - chr7_2:77159384-77159403 Msa1078280:intron 35.0%
AATGGTACGAACCAGAAATT+TGG + chr7_2:77159412-77159431 None:intergenic 35.0%
TCACAATTGGCACAAAAAGA+TGG - chr7_2:77159520-77159539 Msa1078280:intron 35.0%
ATCTCAATGCAGACACATTT+AGG - chr7_2:77159716-77159735 Msa1078280:CDS 35.0%
GATATTGAACAGAGATGAAG+AGG - chr7_2:77159738-77159757 Msa1078280:CDS 35.0%
AACTCTTACCAACAAAGATG+AGG - chr7_2:77159813-77159832 Msa1078280:CDS 35.0%
!! CTTTTTCATTACAGCTGCTT+CGG - chr7_2:77159856-77159875 Msa1078280:CDS 35.0%
TATTTCTCTCATCAAGCTAC+TGG + chr7_2:77159890-77159909 None:intergenic 35.0%
!! TTGAAGTTTGTTTGACTTGC+GGG + chr7_2:77159958-77159977 None:intergenic 35.0%
!! GGTCACTTTGTCTTTTCAAT+TGG + chr7_2:77160142-77160161 None:intergenic 35.0%
AACATGCCAACAACCTCTAA+CGG + chr7_2:77155498-77155517 None:intergenic 40.0%
GTTATACGACCCGATAACTT+CGG - chr7_2:77155566-77155585 Msa1078280:CDS 40.0%
ATACAGTTGCCGAAGTTATC+GGG + chr7_2:77155578-77155597 None:intergenic 40.0%
CATACAGTTGCCGAAGTTAT+CGG + chr7_2:77155579-77155598 None:intergenic 40.0%
!! GTCAACAAGTGTGTCGATTT+GGG + chr7_2:77155644-77155663 None:intergenic 40.0%
GTTATACATGGTGCACAAGA+AGG - chr7_2:77155710-77155729 Msa1078280:CDS 40.0%
ATGTAAGCAAACCGAGGATA+GGG + chr7_2:77155818-77155837 None:intergenic 40.0%
AATGTAAGCAAACCGAGGAT+AGG + chr7_2:77155819-77155838 None:intergenic 40.0%
TTGTTGAAGTGGATACATGG+AGG - chr7_2:77155923-77155942 Msa1078280:CDS 40.0%
GCTCATAGTTACCAACATGT+AGG + chr7_2:77156465-77156484 None:intergenic 40.0%
CAAAACTCCAGGAATCGATT+GGG - chr7_2:77156725-77156744 Msa1078280:CDS 40.0%
AAAACTCCAGGAATCGATTG+GGG - chr7_2:77156726-77156745 Msa1078280:CDS 40.0%
GTCACTATGCATTTGTCACT+AGG - chr7_2:77156819-77156838 Msa1078280:CDS 40.0%
GTTACGCAGACATATGAGTT+TGG + chr7_2:77157042-77157061 None:intergenic 40.0%
ACAAACACTTGGAGACAGAT+TGG + chr7_2:77157102-77157121 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr7_2:77157619-77157638 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr7_2:77157620-77157639 None:intergenic 40.0%
TAAGAATCAACTTCACCCTC+CGG + chr7_2:77157754-77157773 None:intergenic 40.0%
!!! CATTGTCTTGTTTTCAGGCA+AGG - chr7_2:77157987-77158006 Msa1078280:intron 40.0%
TGTGATACTATGGAGAAGCT+TGG + chr7_2:77158143-77158162 None:intergenic 40.0%
CCAGTGTAGTTGTGATACTA+TGG + chr7_2:77158153-77158172 None:intergenic 40.0%
CCATAGTATCACAACTACAC+TGG - chr7_2:77158150-77158169 Msa1078280:intron 40.0%
GGAAATACCAATAAGAGGGA+TGG - chr7_2:77158376-77158395 Msa1078280:intron 40.0%
!! TCCTGTTGGTGTTATTGATG+AGG - chr7_2:77158427-77158446 Msa1078280:intron 40.0%
TCCTCATCAATAACACCAAC+AGG + chr7_2:77158431-77158450 None:intergenic 40.0%
GTTATTGATGAGGAGCTAAG+AGG - chr7_2:77158437-77158456 Msa1078280:intron 40.0%
TGAGTTGTGGTTGCATCAAA+AGG + chr7_2:77158527-77158546 None:intergenic 40.0%
! TGGGAGATTTTTGTAGGCTA+TGG + chr7_2:77158585-77158604 None:intergenic 40.0%
!!! TCTGAGCTTTTTTCTGCACA+TGG + chr7_2:77158673-77158692 None:intergenic 40.0%
! ATGCAAAGATCAAGCTTTGG+TGG + chr7_2:77158760-77158779 None:intergenic 40.0%
TAGGGATAATGCATATTGGG+CGG - chr7_2:77158832-77158851 Msa1078280:intron 40.0%
ACAGCTATGGGATCAATCTA+CGG - chr7_2:77158929-77158948 Msa1078280:intron 40.0%
! GGTTCTTAGCTCTTATACCA+TGG - chr7_2:77158993-77159012 Msa1078280:intron 40.0%
CTCAGGCAAAGTAGAATGTA+TGG - chr7_2:77159034-77159053 Msa1078280:intron 40.0%
CAGGCAAAGTAGAATGTATG+GGG - chr7_2:77159036-77159055 Msa1078280:intron 40.0%
AGTAGAATGTATGGGGAATC+TGG - chr7_2:77159043-77159062 Msa1078280:intron 40.0%
GTAGAATGTATGGGGAATCT+GGG - chr7_2:77159044-77159063 Msa1078280:intron 40.0%
TAGAATGTATGGGGAATCTG+GGG - chr7_2:77159045-77159064 Msa1078280:intron 40.0%
GGGCAATTTCGACAGTTATA+GGG - chr7_2:77159065-77159084 Msa1078280:intron 40.0%
GGCAATTTCGACAGTTATAG+GGG - chr7_2:77159066-77159085 Msa1078280:intron 40.0%
TATAGTACCCCGACTCAATT+TGG - chr7_2:77159115-77159134 Msa1078280:intron 40.0%
TAGCAACTCCAAATTGAGTC+GGG + chr7_2:77159126-77159145 None:intergenic 40.0%
CTAGCAACTCCAAATTGAGT+CGG + chr7_2:77159127-77159146 None:intergenic 40.0%
ACGACGTATCTCTTTCGTTA+GGG + chr7_2:77159297-77159316 None:intergenic 40.0%
CTGAAATGGAGCCAAATTTC+TGG - chr7_2:77159398-77159417 Msa1078280:intron 40.0%
CTGTAGCAGGTAGTATGAAA+TGG + chr7_2:77159430-77159449 None:intergenic 40.0%
ATATGCTGGGATCTCTATCA+AGG - chr7_2:77159452-77159471 Msa1078280:intron 40.0%
!!! GGTAGATCTCTTGCTTTTTG+TGG - chr7_2:77159477-77159496 Msa1078280:intron 40.0%
! GCTTTTTGTGGCATACTCAA+TGG - chr7_2:77159489-77159508 Msa1078280:intron 40.0%
AATGGAGCATGTCTCACAAT+TGG - chr7_2:77159507-77159526 Msa1078280:intron 40.0%
TGGATGGATATTCAAGGTCA+AGG - chr7_2:77159550-77159569 Msa1078280:intron 40.0%
GGATGGATATTCAAGGTCAA+GGG - chr7_2:77159551-77159570 Msa1078280:intron 40.0%
TGCCCCAATATTGAAAAGCT+TGG - chr7_2:77159606-77159625 Msa1078280:intron 40.0%
CAATTTCCTCTAGATGTTGG+AGG + chr7_2:77159786-77159805 None:intergenic 40.0%
CAGCAATTTCCTCTAGATGT+TGG + chr7_2:77159789-77159808 None:intergenic 40.0%
CAACATCTAGAGGAAATTGC+TGG - chr7_2:77159787-77159806 Msa1078280:CDS 40.0%
AAGCATCTCCTCATCTTTGT+TGG + chr7_2:77159824-77159843 None:intergenic 40.0%
!! TGAAGTTTGTTTGACTTGCG+GGG + chr7_2:77159957-77159976 None:intergenic 40.0%
! GAGTTGTTTCGAACTCGTCT+TGG - chr7_2:77155323-77155342 Msa1078280:three_prime_UTR 45.0%
ACCTTAGCATGCAGCATAGT+TGG - chr7_2:77155362-77155381 Msa1078280:three_prime_UTR 45.0%
ACCAACTATGCTGCATGCTA+AGG + chr7_2:77155366-77155385 None:intergenic 45.0%
GTGTTGTCTGATGGAACACT+TGG - chr7_2:77155467-77155486 Msa1078280:CDS 45.0%
CGATAACTTCGGCAACTGTA+TGG - chr7_2:77155577-77155596 Msa1078280:CDS 45.0%
!! CGTCAACAAGTGTGTCGATT+TGG + chr7_2:77155645-77155664 None:intergenic 45.0%
! CGACACACTTGTTGACGAAA+AGG - chr7_2:77155648-77155667 Msa1078280:CDS 45.0%
GGCTACGCATTCAATTCATG+TGG - chr7_2:77155736-77155755 Msa1078280:CDS 45.0%
TGGAGCTATAGCTTCTGTTC+TGG - chr7_2:77155775-77155794 Msa1078280:CDS 45.0%
! TCCTCGGTTTGCTTACATTG+AGG - chr7_2:77155820-77155839 Msa1078280:CDS 45.0%
ACCTCAATGTAAGCAAACCG+AGG + chr7_2:77155824-77155843 None:intergenic 45.0%
AAACGACTCTGCCTACATGT+TGG - chr7_2:77156451-77156470 Msa1078280:CDS 45.0%
!! CCAATCGATTCCTGGAGTTT+TGG + chr7_2:77156727-77156746 None:intergenic 45.0%
CCAAAACTCCAGGAATCGAT+TGG - chr7_2:77156724-77156743 Msa1078280:CDS 45.0%
GCAGACATATGAGTTTGGAC+TGG + chr7_2:77157037-77157056 None:intergenic 45.0%
! AACAGCAGTTGAGTTGTCTG+AGG + chr7_2:77158080-77158099 None:intergenic 45.0%
TCAGACAACTCAACTGCTGT+TGG - chr7_2:77158079-77158098 Msa1078280:intron 45.0%
ACAAACAGGATGGCATGCAT+TGG - chr7_2:77158288-77158307 Msa1078280:intron 45.0%
CAAACAGGATGGCATGCATT+GGG - chr7_2:77158289-77158308 Msa1078280:intron 45.0%
GCAATGTCCATCCCTCTTAT+TGG + chr7_2:77158386-77158405 None:intergenic 45.0%
ATGGACATTGCTCTATCGAG+TGG - chr7_2:77158395-77158414 Msa1078280:intron 45.0%
! AGTGGCATGTCTTTTCCTGT+TGG - chr7_2:77158413-77158432 Msa1078280:intron 45.0%
!! GAGCTTGTTGGAGCTACATT+GGG + chr7_2:77158708-77158727 None:intergenic 45.0%
!! TGAGCTTGTTGGAGCTACAT+TGG + chr7_2:77158709-77158728 None:intergenic 45.0%
! AAGATCAAGCTTTGGTGGCT+GGG + chr7_2:77158755-77158774 None:intergenic 45.0%
! AAAGATCAAGCTTTGGTGGC+TGG + chr7_2:77158756-77158775 None:intergenic 45.0%
AGGGATAATGCATATTGGGC+GGG - chr7_2:77158833-77158852 Msa1078280:intron 45.0%
GCGTTTGCAACTGAGAATGT+TGG + chr7_2:77158896-77158915 None:intergenic 45.0%
CAGCTATGGGATCAATCTAC+GGG - chr7_2:77158930-77158949 Msa1078280:intron 45.0%
GGGGCAATTTCGACAGTTAT+AGG - chr7_2:77159064-77159083 Msa1078280:intron 45.0%
CTTCCTACCAAGGATCAACA+AGG + chr7_2:77159092-77159111 None:intergenic 45.0%
AGCAACTCCAAATTGAGTCG+GGG + chr7_2:77159125-77159144 None:intergenic 45.0%
AGAATGGCAGAGGCTACAAT+AGG - chr7_2:77159145-77159164 Msa1078280:intron 45.0%
! GCAATCTTGGAGTGTTCTGA+AGG + chr7_2:77159251-77159270 None:intergenic 45.0%
TCTTTCGTTAGGGGTAGTCA+TGG + chr7_2:77159287-77159306 None:intergenic 45.0%
CGACGTATCTCTTTCGTTAG+GGG + chr7_2:77159296-77159315 None:intergenic 45.0%
GACGACGTATCTCTTTCGTT+AGG + chr7_2:77159298-77159317 None:intergenic 45.0%
TACCTGCTACAGCAATATGC+TGG - chr7_2:77159438-77159457 Msa1078280:intron 45.0%
ACCTGCTACAGCAATATGCT+GGG - chr7_2:77159439-77159458 Msa1078280:intron 45.0%
CTCTTTCCTCCAACATCTAG+AGG - chr7_2:77159777-77159796 Msa1078280:CDS 45.0%
ACATGGTGCACAAGAAGGAG+TGG - chr7_2:77155715-77155734 Msa1078280:CDS 50.0%
AGCTATAGCTCCAAGTGCAG+TGG + chr7_2:77155768-77155787 None:intergenic 50.0%
! TTGGATCCCCAATCGATTCC+TGG + chr7_2:77156735-77156754 None:intergenic 50.0%
! CATTGAAGTGGGGGTTAGTG+AGG + chr7_2:77157573-77157592 None:intergenic 50.0%
! TGAGTTGTCTGAGGCTGAGA+TGG + chr7_2:77158071-77158090 None:intergenic 50.0%
!! TCCTGTTGTGGAGAGGTACT+TGG + chr7_2:77158119-77158138 None:intergenic 50.0%
GGCAAAGCCTAATGACAGAG+AGG + chr7_2:77158789-77158808 None:intergenic 50.0%
TTAGGCTTTGCCGTGTTCCT+TGG - chr7_2:77158797-77158816 Msa1078280:intron 50.0%
TTCTCAGTTGCAAACGCACG+AGG - chr7_2:77158899-77158918 Msa1078280:intron 50.0%
ACGAGGAACAGGAACAGCTA+TGG - chr7_2:77158916-77158935 Msa1078280:intron 50.0%
CGAGGAACAGGAACAGCTAT+GGG - chr7_2:77158917-77158936 Msa1078280:intron 50.0%
!! ATAGGGGCCTTGTTGATCCT+TGG - chr7_2:77159082-77159101 Msa1078280:intron 50.0%
TGGAGTTGCTAGAATGGCAG+AGG - chr7_2:77159135-77159154 Msa1078280:intron 50.0%
CTAGAGTTGCAGCTCTTGAG+GGG + chr7_2:77159207-77159226 None:intergenic 50.0%
GCTAGAGTTGCAGCTCTTGA+GGG + chr7_2:77159208-77159227 None:intergenic 50.0%
TGCTAGAGTTGCAGCTCTTG+AGG + chr7_2:77159209-77159228 None:intergenic 50.0%
TCCCAGCATATTGCTGTAGC+AGG + chr7_2:77159443-77159462 None:intergenic 50.0%
GCTGGGATCTCTATCAAGGA+CGG - chr7_2:77159456-77159475 Msa1078280:intron 50.0%
TCTTGTGACTCGAGATCGTG+AGG + chr7_2:77159694-77159713 None:intergenic 50.0%
!! ACACTTGGTGACGCCGTTAG+AGG - chr7_2:77155482-77155501 Msa1078280:CDS 55.0%
GTGACGCCGTTAGAGGTTGT+TGG - chr7_2:77155489-77155508 Msa1078280:CDS 55.0%
AGTGGCTACCGGTGCATTTG+TGG - chr7_2:77155610-77155629 Msa1078280:CDS 55.0%
!! GTGGCTTGTTCCACTGCACT+TGG - chr7_2:77155755-77155774 Msa1078280:CDS 55.0%
AGCAAACCGAGGATAGGGCA+GGG + chr7_2:77155813-77155832 None:intergenic 55.0%
AAGCAAACCGAGGATAGGGC+AGG + chr7_2:77155814-77155833 None:intergenic 55.0%
GCCAAGTACCTCTCCACAAC+AGG - chr7_2:77158115-77158134 Msa1078280:intron 55.0%
GAGAAGCTTGGCTCCTGTTG+TGG + chr7_2:77158131-77158150 None:intergenic 55.0%
CAAACGCTCGCTGAGCTTGT+TGG + chr7_2:77158720-77158739 None:intergenic 55.0%
GTTGCAAACGCACGAGGAAC+AGG - chr7_2:77158905-77158924 Msa1078280:intron 55.0%
!! GGGCCTTGTTGATCCTTGGT+AGG - chr7_2:77159086-77159105 Msa1078280:intron 55.0%
GGCTACCGGTGCATTTGTGG+TGG - chr7_2:77155613-77155632 Msa1078280:CDS 60.0%
CAGCGCCACCACAAATGCAC+CGG + chr7_2:77155621-77155640 None:intergenic 60.0%
ATAGGGCAGGGGCAGCAACA+TGG + chr7_2:77155801-77155820 None:intergenic 60.0%
GCAAACCGAGGATAGGGCAG+GGG + chr7_2:77155812-77155831 None:intergenic 60.0%
GCTTGGCTCCTGTTGTGGAG+AGG + chr7_2:77158126-77158145 None:intergenic 60.0%
CGGCAACTGTATGGCTGCGC+TGG - chr7_2:77155586-77155605 Msa1078280:CDS 65.0%
! CTGTATGGCTGCGCTGGCAG+TGG - chr7_2:77155592-77155611 Msa1078280:CDS 65.0%
TGCTGCCCCTGCCCTATCCT+CGG - chr7_2:77155804-77155823 Msa1078280:CDS 65.0%
! GCTGCGCTGGCAGTGGCTAC+CGG - chr7_2:77155599-77155618 Msa1078280:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77155251 77160220 77155251 ID=Msa1078280;Name=Msa1078280
chr7_2 mRNA 77155251 77160220 77155251 ID=Msa1078280-mRNA-1;Parent=Msa1078280;Name=Msa1078280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=36|1|1|1|1|1|3|206|813
chr7_2 exon 77155251 77157175 77155251 ID=Msa1078280-mRNA-1:exon:18864;Parent=Msa1078280-mRNA-1
chr7_2 exon 77157300 77157467 77157300 ID=Msa1078280-mRNA-1:exon:18863;Parent=Msa1078280-mRNA-1
chr7_2 exon 77159630 77160220 77159630 ID=Msa1078280-mRNA-1:exon:18862;Parent=Msa1078280-mRNA-1
chr7_2 five_prime_UTR 77160185 77160220 77160185 ID=Msa1078280-mRNA-1:five_prime_utr;Parent=Msa1078280-mRNA-1
chr7_2 CDS 77159630 77160184 77159630 ID=Msa1078280-mRNA-1:cds;Parent=Msa1078280-mRNA-1
chr7_2 CDS 77157300 77157467 77157300 ID=Msa1078280-mRNA-1:cds;Parent=Msa1078280-mRNA-1
chr7_2 CDS 77155457 77157175 77155457 ID=Msa1078280-mRNA-1:cds;Parent=Msa1078280-mRNA-1
chr7_2 three_prime_UTR 77155251 77155456 77155251 ID=Msa1078280-mRNA-1:three_prime_utr;Parent=Msa1078280-mRNA-1
Gene Sequence

>Msa1078280

ATGTCAGGAACAACAACAATTGCAAAAACAAGGACAGAGTTGTTTCGAACTCGTCTTGGTTCTGCTTTAAGAACAACCTTAGCATGCAGCATAGTTGGTTGCACTGCCCTATATAGCCCTCAACCTATAAAGGGTTACATTAAATTTCCATCTATTTCCTATGTCACAACAATTCTCATAGTGTTGTCTGATGGAACACTTGGTGACGCCGTTAGAGGTTGTTGGCATGTTTTATTGGCAACCATTCAGGTTATGATTTTTTCTCTACTTAGCTTGCAAGTTATACGACCCGATAACTTCGGCAACTGTATGGCTGCGCTGGCAGTGGCTACCGGTGCATTTGTGGTGGCGCTGCCCAAATCGACACACTTGTTGACGAAAAGGATTGCATATGGACAGCTTGTGATAGTATATGTCAGCACAGTTATACATGGTGCACAAGAAGGAGTGGCTACGCATTCAATTCATGTGGCTTGTTCCACTGCACTTGGAGCTATAGCTTCTGTTCTGGCCATGTTGCTGCCCCTGCCCTATCCTCGGTTTGCTTACATTGAGGCAAGGAAGTTCAACCAACTATACATTGAGAATACATCTGAGAGATTAAGTTGCAATATAGAGGCCATCTCAGCCTCAGACAACTCAACTGCTGTTGGTTTTATAACTAAAGCCAAGTACCTCTCCACAACAGGAGCCAAGCTTCTCCATAGTATCACAACTACACTGGATGGCATGCATTGGGAGAGACCTCAAACAATAATTTCGAACTCTTGTTGCATTGACCCAGAAGAGAAACTGCAAGATTTGGAAATACCAATAAGAGGGATGGACATTGCTCTATCGAGTGGCATGTCTTTTCCTGTTGGTGTTATTGATGAGGAGCTAAGAGGTGTTCTGCTCAATTGCAGAGAACAAATCAGCCAAAAATTAGACCAGCAAGCTAAATGTTTTGTTCCTTTTGATGCAACCACAACTCAAGAAATGAAACAAGACATTTTCAACAAAAACCCATCCATAGCCTACAAAAATCTCCCAACATCATTCTTTTTATACTGTGTGCAACTTCTCCGAGATGACTTGTCTATTTCAAAGAAAACTGACCATGTGCAGAAAAAAGCTCAGAAAAATGATGATTCCCAATGTAGCTCCAACAAGCTCAGCGAGCGTTTGATGAACTTGATTCCCAGCCACCAAAGCTTGATCTTTGCATTTAAGTCCTCTCTGTCATTAGGCTTTGCCGTGTTCCTTGGTTTGATATATGATAGGGATAATGCATATTGGGCGGGACTCACAATTGCAATTAGTTTCGTGACTGGACGACAGCCAACATTCTCAGTTGCAAACGCACGAGGAACAGGAACAGCTATGGGATCAATCTACGGGATCATATGTAGCTTCATTTTCCAAAGATTTGTGGATTTAAGGTTCTTAGCTCTTATACCATGGGTCATTTTCTCTTCTTTTCTCAGGCAAAGTAGAATGTATGGGGAATCTGGGGCAATTTCGACAGTTATAGGGGCCTTGTTGATCCTTGGTAGGAAGAACTATAGTACCCCGACTCAATTTGGAGTTGCTAGAATGGCAGAGGCTACAATAGGACTTACTTGCTTCATCATAATAGAGATTATATTAAGCCCCTCAAGAGCTGCAACTCTAGCAAAATCAGAACTTTCTCAAACCTTCAGAACACTCCAAGATTGCATTAAGCAGATTGCCATGACTACCCCTAACGAAAGAGATACGTCGTCTTCAAGTTATCAAGCACTGCGAGAAGAGCACAAGAAGCTTAAATCTCTTGTGTGTCGATTAAGAGAATTTACAGCAGAAGCTGAAATGGAGCCAAATTTCTGGTTCGTACCATTTCATACTACCTGCTACAGCAATATGCTGGGATCTCTATCAAGGACGGTAGATCTCTTGCTTTTTGTGGCATACTCAATGGAGCATGTCTCACAATTGGCACAAAAAGATGGAGTAATTTGGATGGATATTCAAGGTCAAGGGAATGAGAATGTGAAGATTTTTAAGAACAAAGTTGCCCCAATATTGAAAAGCTTGGAAGAAATAACAACGACGAAGTCTATTAAGAAACTTGAAAACGAGTTGAAGAGCAAAAATGTTCCTCACGATCTCGAGTCACAAGAATATCTCAATGCAGACACATTTAGGATATTGAACAGAGATGAAGAGGTTGACAGCATTACAAACTCTTTCCTCCAACATCTAGAGGAAATTGCTGGCAAAACTCTTACCAACAAAGATGAGGAGATGCTTAAAATTCAGATGCTTTTTCATTACAGCTGCTTCGGATTCTGCACCAGTAGCTTGATGAGAGAAATAACCAAGATTGAGAGTGAAATAAAAGAACTACTTATATGGGAGAACCCCGCAAGTCAAACAAACTTCAAAGAAATTCACTCTAAGATCAATCCTCTGCAAACATAG

Protein sequence

>Msa1078280

MSGTTTIAKTRTELFRTRLGSALRTTLACSIVGCTALYSPQPIKGYIKFPSISYVTTILIVLSDGTLGDAVRGCWHVLLATIQVMIFSLLSLQVIRPDNFGNCMAALAVATGAFVVALPKSTHLLTKRIAYGQLVIVYVSTVIHGAQEGVATHSIHVACSTALGAIASVLAMLLPLPYPRFAYIEARKFNQLYIENTSERLSCNIEAISASDNSTAVGFITKAKYLSTTGAKLLHSITTTLDGMHWERPQTIISNSCCIDPEEKLQDLEIPIRGMDIALSSGMSFPVGVIDEELRGVLLNCREQISQKLDQQAKCFVPFDATTTQEMKQDIFNKNPSIAYKNLPTSFFLYCVQLLRDDLSISKKTDHVQKKAQKNDDSQCSSNKLSERLMNLIPSHQSLIFAFKSSLSLGFAVFLGLIYDRDNAYWAGLTIAISFVTGRQPTFSVANARGTGTAMGSIYGIICSFIFQRFVDLRFLALIPWVIFSSFLRQSRMYGESGAISTVIGALLILGRKNYSTPTQFGVARMAEATIGLTCFIIIEIILSPSRAATLAKSELSQTFRTLQDCIKQIAMTTPNERDTSSSSYQALREEHKKLKSLVCRLREFTAEAEMEPNFWFVPFHTTCYSNMLGSLSRTVDLLLFVAYSMEHVSQLAQKDGVIWMDIQGQGNENVKIFKNKVAPILKSLEEITTTKSIKKLENELKSKNVPHDLESQEYLNADTFRILNRDEEVDSITNSFLQHLEEIAGKTLTNKDEEMLKIQMLFHYSCFGFCTSSLMREITKIESEIKELLIWENPASQTNFKEIHSKINPLQT*