Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21502.t1 | XP_003611421.1 | 98 | 883 | 5 | 1 | 1 | 870 | 1 | 883 | 0.00E+00 | 1654 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21502.t1 | O04979 | 79.7 | 888 | 161 | 3 | 1 | 870 | 1 | 887 | 0.0e+00 | 1386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21502.t1 | G7JYP5 | 98.0 | 883 | 5 | 1 | 1 | 870 | 1 | 883 | 0.0e+00 | 1654.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene21502 | 0.807195 | 5.69E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene21502 | 0.805947 | 1.04E-49 | -1.69E-46 |
| MS.gene051438 | MS.gene21502 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene21502 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene052322 | MS.gene21502 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene21502 | 0.801375 | 9.28E-49 | -1.69E-46 |
| MS.gene053873 | MS.gene21502 | 0.805164 | 1.52E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene21502 | 0.816271 | 6.03E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene21502 | 0.819836 | 9.42E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene21502 | 0.807502 | 4.90E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene21502 | 0.808586 | 2.88E-50 | -1.69E-46 |
| MS.gene056497 | MS.gene21502 | 0.83303 | 6.74E-56 | -1.69E-46 |
| MS.gene056514 | MS.gene21502 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene21502 | 0.801316 | 9.54E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene21502 | 0.819626 | 1.05E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene21502 | 0.833401 | 5.45E-56 | -1.69E-46 |
| MS.gene057825 | MS.gene21502 | 0.81873 | 1.68E-52 | -1.69E-46 |
| MS.gene058090 | MS.gene21502 | 0.810469 | 1.13E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene21502 | 0.823182 | 1.59E-53 | -1.69E-46 |
| MS.gene058948 | MS.gene21502 | 0.805421 | 1.35E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene21502 | 0.801598 | 8.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015097 | MS.gene21502 | PPI |
| MS.gene21502 | MS.gene32894 | PPI |
| MS.gene21502 | MS.gene005312 | PPI |
| MS.gene21502 | MS.gene000515 | PPI |
| MS.gene21502 | MS.gene40791 | PPI |
| MS.gene21502 | MS.gene056009 | PPI |
| MS.gene013187 | MS.gene21502 | PPI |
| MS.gene21502 | MS.gene06260 | PPI |
| MS.gene52786 | MS.gene21502 | PPI |
| MS.gene21502 | MS.gene014362 | PPI |
| MS.gene064818 | MS.gene21502 | PPI |
| MS.gene21502 | MS.gene21022 | PPI |
| MS.gene21502 | MS.gene69343 | PPI |
| MS.gene21502 | MS.gene41649 | PPI |
| MS.gene030500 | MS.gene21502 | PPI |
| MS.gene21502 | MS.gene012897 | PPI |
| MS.gene21502 | MS.gene055539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21502.t1 | MTR_5g013790 | 97.961 | 883 | 5 | 1 | 1 | 870 | 1 | 883 | 0.0 | 1748 |
| MS.gene21502.t1 | MTR_4g099020 | 85.135 | 888 | 114 | 3 | 1 | 870 | 1 | 888 | 0.0 | 1528 |
| MS.gene21502.t1 | MTR_4g099020 | 87.375 | 800 | 98 | 1 | 74 | 870 | 26 | 825 | 0.0 | 1425 |
| MS.gene21502.t1 | MTR_4g099020 | 87.375 | 800 | 98 | 1 | 74 | 870 | 22 | 821 | 0.0 | 1423 |
| MS.gene21502.t1 | MTR_1g084020 | 38.645 | 753 | 385 | 14 | 166 | 858 | 232 | 967 | 1.80e-154 | 478 |
| MS.gene21502.t1 | MTR_1g084030 | 43.599 | 289 | 154 | 5 | 252 | 538 | 69 | 350 | 3.77e-67 | 230 |
| MS.gene21502.t1 | MTR_1g083990 | 40.670 | 209 | 108 | 6 | 656 | 858 | 105 | 303 | 2.79e-38 | 149 |
| MS.gene21502.t1 | MTR_1522s0010 | 32.450 | 151 | 100 | 2 | 384 | 534 | 54 | 202 | 1.54e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21502.t1 | AT5G47040 | 80.877 | 889 | 150 | 4 | 1 | 870 | 1 | 888 | 0.0 | 1426 |
| MS.gene21502.t1 | AT5G26860 | 39.563 | 733 | 404 | 13 | 152 | 858 | 259 | 978 | 4.20e-158 | 488 |
| MS.gene21502.t1 | AT3G05790 | 38.219 | 730 | 401 | 12 | 166 | 858 | 211 | 927 | 5.01e-150 | 465 |
| MS.gene21502.t1 | AT3G05790 | 39.219 | 691 | 377 | 11 | 198 | 858 | 261 | 938 | 1.02e-149 | 465 |
| MS.gene21502.t1 | AT3G05780 | 40.803 | 598 | 327 | 10 | 281 | 859 | 332 | 921 | 6.31e-142 | 444 |
| MS.gene21502.t1 | AT3G05775 | 35.484 | 124 | 57 | 3 | 297 | 420 | 30 | 130 | 6.54e-16 | 75.9 |
Find 233 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTGCATCTTCCTTTCC+AGG | 0.178687 | 5.3:-7038719 | None:intergenic |
| GTTTAGCAATACTTCCTTTC+AGG | 0.199688 | 5.3:+7035705 | MS.gene21502:CDS |
| ACCATCGGTGCTAGCCAATT+TGG | 0.273405 | 5.3:+7044372 | MS.gene21502:CDS |
| AAGTCCTTTAAGTTCCTTTC+AGG | 0.285807 | 5.3:-7044337 | None:intergenic |
| CATGGAGCTTATTTCTGTTC+TGG | 0.294413 | 5.3:+7037229 | MS.gene21502:CDS |
| CCTACCTGAAAGGAACTTAA+AGG | 0.295993 | 5.3:+7044333 | MS.gene21502:CDS |
| TGGAAGGACGAAAGTTCTTT+TGG | 0.297337 | 5.3:+7037599 | MS.gene21502:CDS |
| GCATTTAATTCCAAGAGTTC+TGG | 0.305703 | 5.3:+7041490 | MS.gene21502:CDS |
| ATTGGTTGACAGGCACTTAC+AGG | 0.307853 | 5.3:+7037743 | MS.gene21502:CDS |
| GGAAGCTGGTGTTCGAAGTT+TGG | 0.311068 | 5.3:+7042084 | MS.gene21502:CDS |
| GTCCAGTTCAAGCTCTTTGC+TGG | 0.319780 | 5.3:-7039674 | None:intergenic |
| GGGACTTACTACACCACTTC+TGG | 0.321663 | 5.3:+7042192 | MS.gene21502:CDS |
| GTGACATATCAAACACATTT+AGG | 0.322166 | 5.3:+7042278 | MS.gene21502:CDS |
| ATGGAAGTCATTGAGCTTCC+TGG | 0.327888 | 5.3:+7041431 | MS.gene21502:CDS |
| ATGTTGTTCATTGGCATAAC+AGG | 0.340249 | 5.3:+7036313 | MS.gene21502:CDS |
| GGATATCTGTCGGGCTGGTC+TGG | 0.344976 | 5.3:+7042763 | MS.gene21502:CDS |
| AAGGGTGAATTGCATCTTAC+TGG | 0.345401 | 5.3:+7042837 | MS.gene21502:CDS |
| ATCAGAAAACATGGCGGATT+CGG | 0.353303 | 5.3:+7035667 | None:intergenic |
| TCTTGGAATTAAATGCTTCA+TGG | 0.358343 | 5.3:-7041483 | None:intergenic |
| ATCTTCTATTGCTGCTGCTC+TGG | 0.359511 | 5.3:+7039953 | MS.gene21502:CDS |
| CCAGCTGAAGGCCCATCTTT+AGG | 0.362695 | 5.3:-7043399 | None:intergenic |
| AACAGAGTTTACCTCCAAAT+TGG | 0.373480 | 5.3:-7044386 | None:intergenic |
| GGAGGATGACCTGGCTGCCC+TGG | 0.397553 | 5.3:+7038701 | MS.gene21502:CDS |
| TTCAGAATGATGTTGTTCAT+TGG | 0.399246 | 5.3:+7036304 | MS.gene21502:CDS |
| TTCGTTGGACCTCCTGGTGT+TGG | 0.400352 | 5.3:+7039915 | MS.gene21502:CDS |
| TCAAGGAGAGGTGGAGGAAT+AGG | 0.402044 | 5.3:-7041404 | None:intergenic |
| TCCCTCTTGTGTTTAGATCC+TGG | 0.404247 | 5.3:-7036546 | None:intergenic |
| GTTTCTCTTCCATCAAACTT+TGG | 0.404295 | 5.3:-7042717 | None:intergenic |
| ACATACATTGGAAGCATGCC+AGG | 0.404875 | 5.3:+7040044 | MS.gene21502:CDS |
| AACAACATCATTCTGAACTT+TGG | 0.409435 | 5.3:-7036298 | None:intergenic |
| TAGCAGTTCACGGGCTTACC+TGG | 0.410075 | 5.3:+7039621 | MS.gene21502:CDS |
| ATGCAGCCTCCAAAGTTTGA+TGG | 0.412591 | 5.3:+7042708 | MS.gene21502:intron |
| CCATGTTGGTCCAGAACTCT+TGG | 0.417544 | 5.3:-7041500 | None:intergenic |
| AGCTTTCACTTCGAGAGTTA+AGG | 0.418238 | 5.3:+7038766 | MS.gene21502:CDS |
| GCTTTCAAAAGCAACTGAAT+TGG | 0.419154 | 5.3:+7037725 | MS.gene21502:CDS |
| CGTGACAACATTATGAAATC+CGG | 0.420626 | 5.3:-7037188 | None:intergenic |
| CGATAGCGCTGAAGTGGAAA+TGG | 0.425193 | 5.3:+7042228 | MS.gene21502:CDS |
| TTGTGCTTCGTTGGACCTCC+TGG | 0.426293 | 5.3:+7039909 | MS.gene21502:CDS |
| TGAAGAACAATTATCAATGT+TGG | 0.429291 | 5.3:+7037680 | MS.gene21502:CDS |
| GCAGATCAGCAAGAAGTTCC+AGG | 0.430208 | 5.3:-7039639 | None:intergenic |
| ATACTAGCTGCACATCGATA+TGG | 0.430794 | 5.3:+7044295 | MS.gene21502:CDS |
| ACCTCAAGCAAGGCTGAAGC+TGG | 0.431242 | 5.3:-7040824 | None:intergenic |
| TCTCTTCCATCAAACTTTGG+AGG | 0.433652 | 5.3:-7042714 | None:intergenic |
| CCCTGGGATATCTGTCGGGC+TGG | 0.434416 | 5.3:+7042758 | MS.gene21502:CDS |
| GCTTATTTCTGTTCTGGAGC+AGG | 0.435754 | 5.3:+7037235 | MS.gene21502:CDS |
| TTCCTCCACCTCTCCTTGAC+AGG | 0.440713 | 5.3:+7041408 | MS.gene21502:CDS |
| CAGGAATGCCACAAAATGTC+TGG | 0.441110 | 5.3:+7038742 | MS.gene21502:CDS |
| TCGTTGGACCTCCTGGTGTT+GGG | 0.442977 | 5.3:+7039916 | MS.gene21502:CDS |
| ATAGCTTCATCAACAACAAA+TGG | 0.448887 | 5.3:-7042310 | None:intergenic |
| GGGAAGAGATTCTTGCAGTA+TGG | 0.450131 | 5.3:-7036573 | None:intergenic |
| GGCCAGCAAAGAGCTTGAAC+TGG | 0.452589 | 5.3:+7039672 | MS.gene21502:CDS |
| AAGGATGAGGCTGATATTAG+AGG | 0.453432 | 5.3:+7040011 | MS.gene21502:CDS |
| CAGCTTCCCTGGTATATCTC+TGG | 0.456243 | 5.3:-7042069 | None:intergenic |
| CAGCTCAAATTGCACTAACA+TGG | 0.457967 | 5.3:+7042886 | MS.gene21502:CDS |
| TGACTGGAGAGATGACTTTG+AGG | 0.459709 | 5.3:+7043487 | MS.gene21502:CDS |
| ATATCAGCCAACTTGTGAAC+AGG | 0.461959 | 5.3:-7037630 | None:intergenic |
| TTCTAATCTAGAGATGGAAC+AGG | 0.462301 | 5.3:+7037154 | MS.gene21502:intron |
| TCTTTGCTGGCCTTCTGCCA+TGG | 0.466010 | 5.3:-7039661 | None:intergenic |
| AACACAGGACCTCTTGCATC+TGG | 0.473365 | 5.3:-7039888 | None:intergenic |
| AACCATAGTGATCATTGTCC+AGG | 0.474034 | 5.3:-7039717 | None:intergenic |
| CAGAGATATACCAGGGAAGC+TGG | 0.475812 | 5.3:+7042070 | MS.gene21502:CDS |
| CTATGGTTGAGAAAGTGCTT+GGG | 0.477055 | 5.3:+7042329 | MS.gene21502:CDS |
| AAGAGCAACTGATCTCAAAC+TGG | 0.477594 | 5.3:+7043308 | MS.gene21502:CDS |
| ATTTGTTGTTGATGAAGCTA+TGG | 0.479561 | 5.3:+7042312 | MS.gene21502:CDS |
| TGTGACTTTAGTCACAGCTT+TGG | 0.480340 | 5.3:+7043422 | MS.gene21502:CDS |
| CCCTCTACTCCTTTGCTAAG+TGG | 0.480905 | 5.3:-7042172 | None:intergenic |
| AGAGAAGAGAAAGGGATGAT+TGG | 0.481319 | 5.3:+7036159 | MS.gene21502:CDS |
| AAGATGCAGCCTCAGCAACC+TGG | 0.483411 | 5.3:+7039595 | MS.gene21502:CDS |
| ACATATATAGTTGTTCTTGA+AGG | 0.486468 | 5.3:+7036505 | MS.gene21502:CDS |
| ACTTCGAACACCAGCTTCCC+TGG | 0.487336 | 5.3:-7042080 | None:intergenic |
| GTAACCCCTGGGATATCTGT+CGG | 0.488188 | 5.3:+7042753 | MS.gene21502:CDS |
| TGTTGGTGGTATCAAGGATA+AGG | 0.493185 | 5.3:+7043524 | MS.gene21502:CDS |
| AGAATTTCTTCTGCGCCAGC+AGG | 0.494440 | 5.3:+7037912 | MS.gene21502:CDS |
| AACTTTGAGTGTTGTCTCCA+AGG | 0.494499 | 5.3:-7044685 | None:intergenic |
| CCTAAAGATGGGCCTTCAGC+TGG | 0.495256 | 5.3:+7043399 | MS.gene21502:CDS |
| TCTTCCTTTCCAGGGCAGCC+AGG | 0.495852 | 5.3:-7038710 | None:intergenic |
| GTTTGTGGAGGCTTCAACAA+TGG | 0.498631 | 5.3:+7042809 | MS.gene21502:CDS |
| GTGGAGGCTTCAACAATGGT+AGG | 0.500185 | 5.3:+7042813 | MS.gene21502:CDS |
| GCAGAACGTGTTGTAACCCC+TGG | 0.503121 | 5.3:+7042741 | MS.gene21502:CDS |
| TCACTGCAGCAGCACGAGCA+AGG | 0.503534 | 5.3:-7042123 | None:intergenic |
| AAGAGCTGCACAGGAACGCC+TGG | 0.505014 | 5.3:+7039699 | MS.gene21502:CDS |
| TCTTTAGGTACTGCACCTGC+AGG | 0.506064 | 5.3:-7043384 | None:intergenic |
| GCAGGTGCAGTACCTAAAGA+TGG | 0.507102 | 5.3:+7043387 | MS.gene21502:CDS |
| TAACCCCTGGGATATCTGTC+GGG | 0.507187 | 5.3:+7042754 | MS.gene21502:CDS |
| AAATTTGTGCGCATATCCCT+TGG | 0.508116 | 5.3:+7039981 | MS.gene21502:CDS |
| TCCAAATTGGCTAGCACCGA+TGG | 0.513112 | 5.3:-7044373 | None:intergenic |
| TGCTGATCTGCCATGGCAGA+AGG | 0.514222 | 5.3:+7039651 | MS.gene21502:CDS |
| ACTACCTGTTGGTGGTATCA+AGG | 0.514302 | 5.3:+7043518 | MS.gene21502:CDS |
| TGGTGGAGAAGTTCAGTTTG+TGG | 0.514334 | 5.3:+7042794 | MS.gene21502:CDS |
| TTCGTTGCACTTCACCTACC+AGG | 0.516405 | 5.3:+7035762 | MS.gene21502:CDS |
| GACTGGAGAGATGACTTTGA+GGG | 0.516889 | 5.3:+7043488 | MS.gene21502:CDS |
| ATGCCAGGGAGGCTTATAGA+TGG | 0.518627 | 5.3:+7040059 | MS.gene21502:CDS |
| TCTTTATAGAAACAAAGTAC+TGG | 0.521397 | 5.3:+7037576 | MS.gene21502:intron |
| GGCTTCAACAATGGTAGGGA+AGG | 0.522275 | 5.3:+7042818 | MS.gene21502:CDS |
| AGGAACAAAGTTCTCTTACC+TGG | 0.522993 | 5.3:+7035725 | MS.gene21502:CDS |
| AAGCAACTGAATTGGTTGAC+AGG | 0.523403 | 5.3:+7037733 | MS.gene21502:CDS |
| TCACGGTTGTTGACACCCAT+TGG | 0.523476 | 5.3:-7042259 | None:intergenic |
| TGGAAGTCATTGAGCTTCCT+GGG | 0.523618 | 5.3:+7041432 | MS.gene21502:CDS |
| GGTCCTGTGTTGTGCTTCGT+TGG | 0.524155 | 5.3:+7039900 | MS.gene21502:CDS |
| AGATCTGATACCGCTATGAC+TGG | 0.524335 | 5.3:+7043471 | MS.gene21502:CDS |
| CTGTGGCAAAGAGAAGAGAA+AGG | 0.524470 | 5.3:+7036150 | MS.gene21502:CDS |
| TATTGAATGTAGTGTGAAGT+TGG | 0.524516 | 5.3:+7036116 | MS.gene21502:intron |
| GGTGAGCATTAATCTGTTGG+AGG | 0.526627 | 5.3:+7043338 | MS.gene21502:CDS |
| AACTTCTTGCTGATCTGCCA+TGG | 0.527979 | 5.3:+7039644 | MS.gene21502:CDS |
| GACTGTTCCTGTTCACAAGT+TGG | 0.528077 | 5.3:+7037623 | MS.gene21502:CDS |
| CGCCTGGACAATGATCACTA+TGG | 0.529644 | 5.3:+7039715 | MS.gene21502:CDS |
| CCTTTAAGTTCCTTTCAGGT+AGG | 0.529882 | 5.3:-7044333 | None:intergenic |
| TGAAAGGAACTTAAAGGACT+TGG | 0.530014 | 5.3:+7044339 | MS.gene21502:CDS |
| TTATCCTTGATACCACCAAC+AGG | 0.532012 | 5.3:-7043522 | None:intergenic |
| AACCTGGGTATAGCAGTTCA+CGG | 0.533035 | 5.3:+7039611 | MS.gene21502:CDS |
| ATGACCTGGCTGCCCTGGAA+AGG | 0.534598 | 5.3:+7038706 | MS.gene21502:CDS |
| CTGGTCTGGACTTCTGTTGG+TGG | 0.535024 | 5.3:+7042777 | MS.gene21502:CDS |
| GGGCTGGTCTGGACTTCTGT+TGG | 0.535931 | 5.3:+7042774 | MS.gene21502:CDS |
| ACTTGTCGATAGCGCTGAAG+TGG | 0.536354 | 5.3:+7042222 | MS.gene21502:CDS |
| ACTTTGCATCTTCCTTTCCA+GGG | 0.537168 | 5.3:-7038718 | None:intergenic |
| AAGAGAACTTTGTTCCTGAA+AGG | 0.538793 | 5.3:-7035719 | None:intergenic |
| TTTGTGCAGATTTAATGTCC+AGG | 0.540417 | 5.3:+7036528 | MS.gene21502:CDS |
| ACTTTGAGTGTTGTCTCCAA+GGG | 0.540729 | 5.3:-7044684 | None:intergenic |
| TCCACCTCTCCTTGACAGGA+TGG | 0.542029 | 5.3:+7041412 | MS.gene21502:CDS |
| TGAATACCTAGCCGTTCGTA+AGG | 0.542078 | 5.3:+7039765 | MS.gene21502:CDS |
| TCCACTTAGCAAAGGAGTAG+AGG | 0.545494 | 5.3:+7042171 | MS.gene21502:CDS |
| CACTGCAGCAGCACGAGCAA+GGG | 0.546588 | 5.3:-7042122 | None:intergenic |
| TACCGGTCTTAGTCATCTCA+AGG | 0.548099 | 5.3:-7036594 | None:intergenic |
| TGGTGTTGGGAAAACATCAT+TGG | 0.548490 | 5.3:+7039929 | MS.gene21502:CDS |
| TCAGATGAAGGCTATAAAAG+AGG | 0.548654 | 5.3:+7038656 | MS.gene21502:intron |
| TGCGGTGAGCATTAATCTGT+TGG | 0.551507 | 5.3:+7043335 | MS.gene21502:CDS |
| TCCCTTGAGATGACTAAGAC+CGG | 0.554372 | 5.3:+7036592 | MS.gene21502:CDS |
| TCCAGCTTCAGCCTTGCTTG+AGG | 0.556384 | 5.3:+7040823 | MS.gene21502:CDS |
| CCACTTAGCAAAGGAGTAGA+GGG | 0.557449 | 5.3:+7042172 | MS.gene21502:CDS |
| CTGCTATACCCAGGTTGCTG+AGG | 0.557666 | 5.3:-7039604 | None:intergenic |
| ATACATATACATTTCCCTGC+AGG | 0.560721 | 5.3:+7043369 | MS.gene21502:CDS |
| GAAGCAGCAGTATCACGTAC+TGG | 0.563002 | 5.3:-7036189 | None:intergenic |
| ACCAGCCCGACAGATATCCC+AGG | 0.565995 | 5.3:-7042759 | None:intergenic |
| GAAAGGAAGATGCAAAGTGC+AGG | 0.568446 | 5.3:+7038723 | MS.gene21502:CDS |
| CGAATTCGAATGATAGCACC+AGG | 0.570028 | 5.3:-7035743 | None:intergenic |
| AGTCCATCTATAAGCCTCCC+TGG | 0.570350 | 5.3:-7040062 | None:intergenic |
| TGGAGGCTTCAACAATGGTA+GGG | 0.571399 | 5.3:+7042814 | MS.gene21502:CDS |
| CATATCCCTTGGTGGAGTCA+AGG | 0.571591 | 5.3:+7039992 | MS.gene21502:CDS |
| TCTGCTGAAACTAAGCAACT+TGG | 0.571818 | 5.3:+7036210 | MS.gene21502:CDS |
| TGGAGAAGTTCAGTTTGTGG+AGG | 0.572206 | 5.3:+7042797 | MS.gene21502:CDS |
| TTATAGAAACAAAGTACTGG+TGG | 0.572333 | 5.3:+7037579 | MS.gene21502:intron |
| AGGGGTCTAGTACTACCTGT+TGG | 0.573314 | 5.3:+7043507 | MS.gene21502:CDS |
| ATCCTGTCAAGGAGAGGTGG+AGG | 0.573725 | 5.3:-7041410 | None:intergenic |
| CTAGATGAAATCGACAAGAC+AGG | 0.573743 | 5.3:+7040782 | MS.gene21502:CDS |
| ATTACCTTGGATAGATCGAA+TGG | 0.574554 | 5.3:-7041353 | None:intergenic |
| ATTTCATCTAGCAACATGAC+GGG | 0.574971 | 5.3:-7040770 | None:intergenic |
| GGTCTAGTACTACCTGTTGG+TGG | 0.575809 | 5.3:+7043510 | MS.gene21502:CDS |
| TGAGTTTCTTCAAATTCCGA+AGG | 0.577098 | 5.3:+7041532 | MS.gene21502:CDS |
| ATATATGTGACCCTCCCACT+TGG | 0.578521 | 5.3:-7036490 | None:intergenic |
| ATCGGTGCTAGCCAATTTGG+AGG | 0.578618 | 5.3:+7044375 | MS.gene21502:CDS |
| CAATGACTTCCATCCTGTCA+AGG | 0.579001 | 5.3:-7041421 | None:intergenic |
| AGATGCAGCCTCAGCAACCT+GGG | 0.579158 | 5.3:+7039596 | MS.gene21502:CDS |
| CCAAGAGTTCTGGACCAACA+TGG | 0.579915 | 5.3:+7041500 | MS.gene21502:CDS |
| AGCTCAAATTGCACTAACAT+GGG | 0.580754 | 5.3:+7042887 | MS.gene21502:CDS |
| GGAACAGGTGGAGCATGACC+CGG | 0.582137 | 5.3:+7037169 | MS.gene21502:CDS |
| TTTGTGCGCATATCCCTTGG+TGG | 0.582171 | 5.3:+7039984 | MS.gene21502:CDS |
| TTGCATCTTACTGGACAGCT+TGG | 0.582322 | 5.3:+7042846 | MS.gene21502:CDS |
| TCCATCCTGTCAAGGAGAGG+TGG | 0.584298 | 5.3:-7041413 | None:intergenic |
| TGATCTCAAACTGGCTGCTG+CGG | 0.587312 | 5.3:+7043317 | MS.gene21502:CDS |
| CTCATCCTTGACTCCACCAA+GGG | 0.587588 | 5.3:-7039997 | None:intergenic |
| CAAGTAGTTCCACTTAGCAA+AGG | 0.588005 | 5.3:+7042163 | MS.gene21502:CDS |
| ACCTGGGTATAGCAGTTCAC+GGG | 0.592271 | 5.3:+7039612 | MS.gene21502:CDS |
| CTCGAGCATTACACTTATCG+AGG | 0.592554 | 5.3:+7036455 | MS.gene21502:CDS |
| GTGACAACATTATGAAATCC+GGG | 0.593087 | 5.3:-7037187 | None:intergenic |
| ACTGGACTTAAGAGCTGCAC+AGG | 0.593331 | 5.3:+7039690 | MS.gene21502:CDS |
| CAGGTGCAGTACCTAAAGAT+GGG | 0.595150 | 5.3:+7043388 | MS.gene21502:CDS |
| CTTGGTTGAAGTGCCACCAT+CGG | 0.597442 | 5.3:+7044357 | MS.gene21502:CDS |
| GCTATGGTTGAGAAAGTGCT+TGG | 0.600223 | 5.3:+7042328 | MS.gene21502:CDS |
| GTGAGCATTAATCTGTTGGA+GGG | 0.600831 | 5.3:+7043339 | MS.gene21502:CDS |
| CCTTGGTGGAGTCAAGGATG+AGG | 0.605860 | 5.3:+7039998 | MS.gene21502:CDS |
| GATACTGCTTGCGAAACGAA+TGG | 0.605902 | 5.3:+7044627 | MS.gene21502:intron |
| TGTGGCAAAGAGAAGAGAAA+GGG | 0.607160 | 5.3:+7036151 | MS.gene21502:CDS |
| TCAATTTAAAGCAACTGCCA+TGG | 0.608110 | 5.3:+7037211 | MS.gene21502:CDS |
| AGAAACAAAGTACTGGTGGA+AGG | 0.610104 | 5.3:+7037583 | MS.gene21502:intron |
| CTGGTGTTCGAAGTTTGGAA+AGG | 0.610258 | 5.3:+7042089 | MS.gene21502:CDS |
| GTCCAGGATCTAAACACAAG+AGG | 0.611069 | 5.3:+7036544 | MS.gene21502:CDS |
| TAATCTAGAGATGGAACAGG+TGG | 0.612364 | 5.3:+7037157 | MS.gene21502:intron |
| CCAGCCCGACAGATATCCCA+GGG | 0.616231 | 5.3:-7042758 | None:intergenic |
| AGAGAGTCATCCTACCTGAA+AGG | 0.617338 | 5.3:+7044323 | MS.gene21502:CDS |
| TTGTTATCCAGAGATATACC+AGG | 0.619097 | 5.3:+7042062 | MS.gene21502:CDS |
| TGATGATGAGGAGGATGACC+TGG | 0.619171 | 5.3:+7038692 | MS.gene21502:CDS |
| AGTAGAGAAACCAAGTGGGA+GGG | 0.619415 | 5.3:+7036480 | MS.gene21502:CDS |
| GGACATAGGAGAACATACAT+TGG | 0.619902 | 5.3:+7040032 | MS.gene21502:CDS |
| CAGAACAGAAATAAGCTCCA+TGG | 0.620283 | 5.3:-7037228 | None:intergenic |
| GAGTAGAGAAACCAAGTGGG+AGG | 0.620927 | 5.3:+7036479 | MS.gene21502:CDS |
| ACTAAAGTCACACCAGCTGA+AGG | 0.622524 | 5.3:-7043411 | None:intergenic |
| GATTTCATCTAGCAACATGA+CGG | 0.626323 | 5.3:-7040771 | None:intergenic |
| GGAAGTATTGCTAAACGACT+CGG | 0.626468 | 5.3:-7035698 | None:intergenic |
| GAGGCTTATAGATGGACTGA+AGG | 0.629475 | 5.3:+7040067 | MS.gene21502:CDS |
| TGACAACCTTACGAACGGCT+AGG | 0.630657 | 5.3:-7039771 | None:intergenic |
| TGTTCCATTCGATCTATCCA+AGG | 0.630979 | 5.3:+7041349 | MS.gene21502:CDS |
| GCTTCAACAATGGTAGGGAA+GGG | 0.631208 | 5.3:+7042819 | MS.gene21502:CDS |
| TCCAGGATCTAAACACAAGA+GGG | 0.632631 | 5.3:+7036545 | MS.gene21502:CDS |
| CAGCTTAAGCCAGATGCAAG+AGG | 0.633930 | 5.3:+7039879 | MS.gene21502:intron |
| TGAAGAAGCATCTACCTGGT+AGG | 0.634508 | 5.3:-7035776 | None:intergenic |
| GCCCGTGAACTGCTATACCC+AGG | 0.634567 | 5.3:-7039613 | None:intergenic |
| TTCATCAACAACAAATGGAG+AGG | 0.635794 | 5.3:-7042305 | None:intergenic |
| ACTCGGTGATAATGATGATG+AGG | 0.635863 | 5.3:+7038680 | MS.gene21502:CDS |
| TCGAGCATTACACTTATCGA+GGG | 0.639262 | 5.3:+7036456 | MS.gene21502:CDS |
| TGATCACTATGGTTTAGAGA+AGG | 0.639775 | 5.3:+7039726 | MS.gene21502:CDS |
| GGTCCAACGAAGCACAACAC+AGG | 0.641264 | 5.3:-7039903 | None:intergenic |
| ACCGGTCTTAGTCATCTCAA+GGG | 0.641791 | 5.3:-7036593 | None:intergenic |
| ACTTCCATCCTGTCAAGGAG+AGG | 0.642275 | 5.3:-7041416 | None:intergenic |
| AAATTGGCTAGCACCGATGG+TGG | 0.642671 | 5.3:-7044370 | None:intergenic |
| ACTCAGAACTCAATCCATGT+TGG | 0.642681 | 5.3:-7041514 | None:intergenic |
| AGGATCAAGAACCTCAAGCA+AGG | 0.643676 | 5.3:-7040834 | None:intergenic |
| CTTTAGGTACTGCACCTGCA+GGG | 0.647269 | 5.3:-7043383 | None:intergenic |
| GGTATTGACAACCTTACGAA+CGG | 0.656181 | 5.3:-7039776 | None:intergenic |
| CCTCATCCTTGACTCCACCA+AGG | 0.656248 | 5.3:-7039998 | None:intergenic |
| GAAATGGAAGTGATACCAAT+GGG | 0.656339 | 5.3:+7042244 | MS.gene21502:CDS |
| CGGTGATAATGATGATGAGG+AGG | 0.657644 | 5.3:+7038683 | MS.gene21502:CDS |
| TATGGTTGAGAAAGTGCTTG+GGG | 0.660924 | 5.3:+7042330 | MS.gene21502:CDS |
| CAGAACGTGTTGTAACCCCT+GGG | 0.661803 | 5.3:+7042742 | MS.gene21502:CDS |
| AGGGGAGTAGAGAAACCAAG+TGG | 0.665723 | 5.3:+7036475 | MS.gene21502:CDS |
| CATACATTGGAAGCATGCCA+GGG | 0.667086 | 5.3:+7040045 | MS.gene21502:CDS |
| TAAATGTGTTTGATATGTCA+CGG | 0.669922 | 5.3:-7042276 | None:intergenic |
| AGGCTGATATTAGAGGACAT+AGG | 0.672911 | 5.3:+7040018 | MS.gene21502:CDS |
| ACTGGAGAGATGACTTTGAG+GGG | 0.676799 | 5.3:+7043489 | MS.gene21502:CDS |
| GTTTAGAGAAGGTCAAGCAG+CGG | 0.681370 | 5.3:+7039737 | MS.gene21502:CDS |
| AAGGCTATAAAAGAGGAACT+CGG | 0.682473 | 5.3:+7038663 | MS.gene21502:CDS |
| CAAACTTCCAAAGTTCATGG+TGG | 0.686043 | 5.3:+7036258 | MS.gene21502:intron |
| AAGACAGGTTCTGATGTTCG+CGG | 0.690453 | 5.3:+7040797 | MS.gene21502:CDS |
| GGAAATGGAAGTGATACCAA+TGG | 0.693833 | 5.3:+7042243 | MS.gene21502:CDS |
| ACTGCTTGCGAAACGAATGG+AGG | 0.694617 | 5.3:+7044630 | MS.gene21502:CDS |
| ATTCTGTTGATGCTAAAGTG+AGG | 0.702267 | 5.3:+7037703 | MS.gene21502:CDS |
| GGGGAGTAGAGAAACCAAGT+GGG | 0.705345 | 5.3:+7036476 | MS.gene21502:CDS |
| GCTTCCTGGGTATACACCCG+AGG | 0.706005 | 5.3:+7041445 | MS.gene21502:CDS |
| TGTTATCCAGAGATATACCA+GGG | 0.708280 | 5.3:+7042063 | MS.gene21502:CDS |
| AGTCATCTCTCCAGTCATAG+CGG | 0.711714 | 5.3:-7043481 | None:intergenic |
| CGAGCATTACACTTATCGAG+GGG | 0.714426 | 5.3:+7036457 | MS.gene21502:CDS |
| ACATTGGAAGCATGCCAGGG+AGG | 0.721249 | 5.3:+7040048 | MS.gene21502:CDS |
| AGTTGGTTGAACAAGAACTG+TGG | 0.782154 | 5.3:+7036133 | MS.gene21502:CDS |
| CAGCCCGACAGATATCCCAG+GGG | 0.819859 | 5.3:-7042757 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 7035677 | 7044711 | 7035677 | ID=MS.gene21502 |
| chr5.3 | mRNA | 7035677 | 7044711 | 7035677 | ID=MS.gene21502.t1;Parent=MS.gene21502 |
| chr5.3 | exon | 7035677 | 7035783 | 7035677 | ID=MS.gene21502.t1.exon1;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7035677 | 7035783 | 7035677 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7036128 | 7036231 | 7036128 | ID=MS.gene21502.t1.exon2;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7036128 | 7036231 | 7036128 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7036271 | 7036334 | 7036271 | ID=MS.gene21502.t1.exon3;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7036271 | 7036334 | 7036271 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7036444 | 7036613 | 7036444 | ID=MS.gene21502.t1.exon4;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7036444 | 7036613 | 7036444 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7037165 | 7037256 | 7037165 | ID=MS.gene21502.t1.exon5;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7037165 | 7037256 | 7037165 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7037585 | 7037764 | 7037585 | ID=MS.gene21502.t1.exon6;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7037585 | 7037764 | 7037585 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7037850 | 7037933 | 7037850 | ID=MS.gene21502.t1.exon7;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7037850 | 7037933 | 7037850 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7038660 | 7038787 | 7038660 | ID=MS.gene21502.t1.exon8;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7038660 | 7038787 | 7038660 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7039585 | 7039786 | 7039585 | ID=MS.gene21502.t1.exon9;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7039585 | 7039786 | 7039585 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7039882 | 7040088 | 7039882 | ID=MS.gene21502.t1.exon10;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7039882 | 7040088 | 7039882 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7040752 | 7040882 | 7040752 | ID=MS.gene21502.t1.exon11;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7040752 | 7040882 | 7040752 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7041340 | 7041553 | 7041340 | ID=MS.gene21502.t1.exon12;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7041340 | 7041553 | 7041340 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7042049 | 7042351 | 7042049 | ID=MS.gene21502.t1.exon13;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7042049 | 7042351 | 7042049 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7042714 | 7042908 | 7042714 | ID=MS.gene21502.t1.exon14;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7042714 | 7042908 | 7042714 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7043300 | 7043545 | 7043300 | ID=MS.gene21502.t1.exon15;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7043300 | 7043545 | 7043300 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7044295 | 7044396 | 7044295 | ID=MS.gene21502.t1.exon16;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7044295 | 7044396 | 7044295 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| chr5.3 | exon | 7044628 | 7044711 | 7044628 | ID=MS.gene21502.t1.exon17;Parent=MS.gene21502.t1 |
| chr5.3 | CDS | 7044628 | 7044711 | 7044628 | ID=cds.MS.gene21502.t1;Parent=MS.gene21502.t1 |
| Gene Sequence |
| Protein sequence |
