Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61239.t1 | XP_013457545.1 | 98.7 | 878 | 11 | 0 | 1 | 878 | 1 | 878 | 0.00E+00 | 1677.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61239.t1 | O04979 | 80.8 | 878 | 168 | 1 | 1 | 878 | 1 | 877 | 0.0e+00 | 1397.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61239.t1 | A0A072UQE3 | 98.7 | 878 | 11 | 0 | 1 | 878 | 1 | 878 | 0.0e+00 | 1677.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene61239 | 0.802356 | 5.83E-49 | -1.69E-46 |
| MS.gene049424 | MS.gene61239 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene049653 | MS.gene61239 | 0.805353 | 1.39E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene61239 | 0.812215 | 4.74E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene61239 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene61239 | 0.842788 | 2.09E-58 | -1.69E-46 |
| MS.gene050359 | MS.gene61239 | 0.806628 | 7.50E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene61239 | 0.836373 | 9.72E-57 | -1.69E-46 |
| MS.gene050386 | MS.gene61239 | 0.8287 | 7.77E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene61239 | 0.852243 | 5.25E-61 | -1.69E-46 |
| MS.gene050689 | MS.gene61239 | 0.828573 | 8.34E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene61239 | 0.817202 | 3.73E-52 | -1.69E-46 |
| MS.gene051209 | MS.gene61239 | 0.813925 | 2.00E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene61239 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene61239 | 0.806129 | 9.55E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene61239 | 0.806117 | 9.61E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene61239 | -0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene61239 | -0.802307 | 5.97E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene61239 | 0.813405 | 2.60E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene61239 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene052954 | MS.gene61239 | 0.843203 | 1.62E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene61239 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene053188 | MS.gene61239 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene053542 | MS.gene61239 | 0.804773 | 1.84E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene61239 | 0.843531 | 1.32E-58 | -1.69E-46 |
| MS.gene053931 | MS.gene61239 | 0.827564 | 1.46E-54 | -1.69E-46 |
| MS.gene054709 | MS.gene61239 | 0.804205 | 2.42E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene61239 | 0.819672 | 1.03E-52 | -1.69E-46 |
| MS.gene056363 | MS.gene61239 | 0.815497 | 8.97E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene61239 | 0.803317 | 3.69E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene61239 | 0.802263 | 6.10E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene61239 | 0.821613 | 3.68E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene61239 | 0.816148 | 6.42E-52 | -1.69E-46 |
| MS.gene057371 | MS.gene61239 | 0.803081 | 4.13E-49 | -1.69E-46 |
| MS.gene057392 | MS.gene61239 | 0.864826 | 9.19E-65 | -1.69E-46 |
| MS.gene057855 | MS.gene61239 | 0.8037 | 3.08E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene61239 | 0.812755 | 3.61E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene61239 | 0.82044 | 6.85E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene61239 | 0.833272 | 5.87E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene61239 | 0.85364 | 2.09E-61 | -1.69E-46 |
| MS.gene058054 | MS.gene61239 | 0.824333 | 8.54E-54 | -1.69E-46 |
| MS.gene058126 | MS.gene61239 | 0.82015 | 7.99E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene61239 | 0.858605 | 7.35E-63 | -1.69E-46 |
| MS.gene058634 | MS.gene61239 | 0.850238 | 1.93E-60 | -1.69E-46 |
| MS.gene058781 | MS.gene61239 | 0.838832 | 2.27E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene61239 | 0.812448 | 4.22E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene61239 | 0.843268 | 1.56E-58 | -1.69E-46 |
| MS.gene05978 | MS.gene61239 | 0.82993 | 3.91E-55 | -1.69E-46 |
| MS.gene060244 | MS.gene61239 | 0.813924 | 2.00E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene61239 | 0.849075 | 4.08E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene61239 | 0.853411 | 2.43E-61 | -1.69E-46 |
| MS.gene060937 | MS.gene61239 | 0.845505 | 3.90E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61239 | MS.gene69343 | PPI |
| MS.gene064818 | MS.gene61239 | PPI |
| MS.gene61239 | MS.gene013187 | PPI |
| MS.gene61239 | MS.gene32894 | PPI |
| MS.gene61239 | MS.gene000515 | PPI |
| MS.gene61239 | MS.gene06260 | PPI |
| MS.gene61239 | MS.gene012897 | PPI |
| MS.gene61239 | MS.gene056009 | PPI |
| MS.gene61239 | MS.gene41649 | PPI |
| MS.gene61239 | MS.gene055539 | PPI |
| MS.gene61239 | MS.gene005312 | PPI |
| MS.gene61239 | MS.gene030500 | PPI |
| MS.gene61239 | MS.gene015097 | PPI |
| MS.gene61239 | MS.gene40791 | PPI |
| MS.gene61239 | MS.gene21022 | PPI |
| MS.gene52786 | MS.gene61239 | PPI |
| MS.gene61239 | MS.gene014362 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61239.t1 | MTR_4g099020 | 98.747 | 878 | 11 | 0 | 1 | 878 | 1 | 878 | 0.0 | 1762 |
| MS.gene61239.t1 | MTR_4g099020 | 98.634 | 805 | 11 | 0 | 74 | 878 | 7 | 811 | 0.0 | 1617 |
| MS.gene61239.t1 | MTR_4g099020 | 98.632 | 804 | 11 | 0 | 75 | 878 | 12 | 815 | 0.0 | 1615 |
| MS.gene61239.t1 | MTR_5g013790 | 85.682 | 880 | 115 | 3 | 1 | 877 | 1 | 872 | 0.0 | 1519 |
| MS.gene61239.t1 | MTR_1g084020 | 38.615 | 751 | 398 | 13 | 185 | 882 | 233 | 973 | 5.97e-157 | 486 |
| MS.gene61239.t1 | MTR_1g084030 | 43.253 | 289 | 155 | 5 | 270 | 556 | 69 | 350 | 7.73e-68 | 232 |
| MS.gene61239.t1 | MTR_1g083990 | 41.905 | 210 | 104 | 6 | 674 | 876 | 105 | 303 | 7.54e-38 | 148 |
| MS.gene61239.t1 | MTR_1522s0010 | 32.075 | 159 | 105 | 3 | 402 | 560 | 54 | 209 | 2.54e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61239.t1 | AT5G47040 | 81.663 | 878 | 160 | 1 | 1 | 878 | 1 | 877 | 0.0 | 1431 |
| MS.gene61239.t1 | AT5G26860 | 40.434 | 737 | 409 | 12 | 160 | 876 | 252 | 978 | 6.90e-161 | 496 |
| MS.gene61239.t1 | AT3G05790 | 39.914 | 694 | 376 | 12 | 211 | 876 | 247 | 927 | 3.52e-152 | 472 |
| MS.gene61239.t1 | AT3G05790 | 39.914 | 694 | 376 | 12 | 211 | 876 | 258 | 938 | 6.44e-152 | 471 |
| MS.gene61239.t1 | AT3G05780 | 42.367 | 583 | 301 | 8 | 315 | 877 | 354 | 921 | 7.55e-145 | 452 |
| MS.gene61239.t1 | AT3G05775 | 39.394 | 99 | 38 | 2 | 340 | 438 | 54 | 130 | 1.04e-14 | 72.4 |
Find 240 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCATCCCTTTGGTTAA+TGG | 0.131589 | 8.2:-23176387 | None:intergenic |
| GTACTTCAACCAAGTCTTTC+AGG | 0.146346 | 8.2:-23179817 | None:intergenic |
| CGAGACAACATTATGTATTC+TGG | 0.201864 | 8.2:-23171113 | None:intergenic |
| TCAAATGCTGCATGGCTATT+TGG | 0.228206 | 8.2:-23175481 | None:intergenic |
| GGAAGCTGGTGTGCGGAATT+TGG | 0.234083 | 8.2:+23176299 | MS.gene61239:CDS |
| GCCTATTCCTCCACCACTTC+TGG | 0.246022 | 8.2:+23175409 | MS.gene61239:CDS |
| ATCTTCTATTGCTGCTGCTT+TGG | 0.246203 | 8.2:+23173860 | MS.gene61239:CDS |
| GGGTCTCTGTTGGGCTGGTT+TGG | 0.253431 | 8.2:+23176949 | MS.gene61239:CDS |
| CACTCTGCATCTTTCTTTCA+AGG | 0.275227 | 8.2:-23173259 | None:intergenic |
| AGGACTTTCTACCCCACTTC+TGG | 0.280518 | 8.2:+23176407 | MS.gene61239:CDS |
| GGGCAAGGGCAACTGATCTT+AGG | 0.280933 | 8.2:+23177586 | MS.gene61239:CDS |
| TCTTCTATTGCTGCTGCTTT+GGG | 0.288134 | 8.2:+23173861 | MS.gene61239:CDS |
| GCATTTGATTCCAAGAGTTT+TGG | 0.288316 | 8.2:+23175496 | MS.gene61239:CDS |
| AGCATCGGTGCTGGCCAATT+TGG | 0.288689 | 8.2:+23179841 | MS.gene61239:CDS |
| GGGCTGGTTTGGACTGCTTT+TGG | 0.295623 | 8.2:+23176960 | MS.gene61239:CDS |
| CCGTTGCTGTTGCTTTGAAT+TGG | 0.301912 | 8.2:-23171136 | None:intergenic |
| GTTAGTTGACAGGCATTTAC+AGG | 0.302637 | 8.2:+23171680 | MS.gene61239:CDS |
| CCCTGGGGTCTCTGTTGGGC+TGG | 0.303072 | 8.2:+23176944 | MS.gene61239:CDS |
| AAGTCTTTCAGGTTCCTTTC+AGG | 0.307666 | 8.2:-23179806 | None:intergenic |
| GCAGAACGTGTGGCTTCCCC+TGG | 0.324890 | 8.2:+23176927 | MS.gene61239:CDS |
| CCTGCCGAGGGCCCATCTTT+AGG | 0.329634 | 8.2:-23177681 | None:intergenic |
| TGGAAGAACCAAAGTCCTTT+TGG | 0.331961 | 8.2:+23171536 | MS.gene61239:CDS |
| GGAGAGGAACCTTGCTGCCT+TGG | 0.334503 | 8.2:+23176320 | MS.gene61239:CDS |
| TTCCTCTTGTGCTAAGTTCC+AGG | 0.339684 | 8.2:-23170357 | None:intergenic |
| CTTCCCCTGGGGTCTCTGTT+GGG | 0.343620 | 8.2:+23176940 | MS.gene61239:CDS |
| TGCAAAGGGATTTAATCTTT+TGG | 0.355060 | 8.2:+23177617 | MS.gene61239:CDS |
| GCTTCCCCTGGGGTCTCTGT+TGG | 0.364825 | 8.2:+23176939 | MS.gene61239:CDS |
| ACCTATGTTGGAAGCATGCC+TGG | 0.369650 | 8.2:+23173951 | MS.gene61239:CDS |
| GCGGGTGCTGTTCCTAAAGA+TGG | 0.371787 | 8.2:+23177669 | MS.gene61239:CDS |
| ATGGAAGTAATCGAGCTTCC+TGG | 0.372510 | 8.2:+23175437 | MS.gene61239:CDS |
| GGGACATCTCAAACACATTC+AGG | 0.396505 | 8.2:+23176493 | MS.gene61239:CDS |
| AAGCAGAATTACCTCCAAAT+TGG | 0.397701 | 8.2:-23179855 | None:intergenic |
| AACGGAGCTTATTTCTGTTC+TGG | 0.401380 | 8.2:+23171154 | MS.gene61239:CDS |
| TCTACCTGTTGGAGGTGTTA+AGG | 0.404773 | 8.2:+23177800 | MS.gene61239:CDS |
| ACATTATTCATTGGCACAAC+AGG | 0.405486 | 8.2:+23169844 | MS.gene61239:CDS |
| TCCCGACTATTTACACTCAT+TGG | 0.411428 | 8.2:-23176474 | None:intergenic |
| AACACGGGACCCCTTGCATC+TGG | 0.413362 | 8.2:-23173795 | None:intergenic |
| TGCGCATGTTTCCATACATT+TGG | 0.414432 | 8.2:-23173293 | None:intergenic |
| TTGTTGGACCGCCAGGTGTC+GGG | 0.416974 | 8.2:+23173823 | MS.gene61239:CDS |
| CTTCGTTGAGATGGCCGAAT+CGG | 0.419489 | 8.2:+23168340 | None:intergenic |
| CTCGACCATTACATTTATCA+AGG | 0.424197 | 8.2:+23170266 | MS.gene61239:CDS |
| ACCTCTAGCAATGCTGAAGC+TGG | 0.425262 | 8.2:-23174767 | None:intergenic |
| AATGTTATCCAAAAGGACTT+TGG | 0.429804 | 8.2:-23171544 | None:intergenic |
| TCCAGAAGTGGTGGAGGAAT+AGG | 0.434825 | 8.2:-23175410 | None:intergenic |
| AGCAGAATGACATTATTCAT+TGG | 0.437242 | 8.2:+23169835 | MS.gene61239:CDS |
| GGCAAGGGCAACTGATCTTA+GGG | 0.438304 | 8.2:+23177587 | MS.gene61239:CDS |
| TCCCTTGAGATGACTAAGAT+TGG | 0.438907 | 8.2:+23170403 | MS.gene61239:CDS |
| GGTCCCGTGTTGTGCTTTGT+TGG | 0.439278 | 8.2:+23173807 | MS.gene61239:CDS |
| CCATGTTGGTCCAAAACTCT+TGG | 0.440635 | 8.2:-23175506 | None:intergenic |
| TGCTGATCTTCCCTGGCAAA+AGG | 0.441124 | 8.2:+23173562 | MS.gene61239:CDS |
| ATATTAGCTGCCCATCGTTA+TGG | 0.442599 | 8.2:+23179764 | MS.gene61239:CDS |
| TGTTATCGCACGCACCTGCT+AGG | 0.443051 | 8.2:-23168449 | None:intergenic |
| ACTTCATCAAGCAACATAAC+AGG | 0.443386 | 8.2:-23174713 | None:intergenic |
| CAGCTTCCCTGGTATATCTC+TGG | 0.443620 | 8.2:-23176284 | None:intergenic |
| CAGGAATGCCACCAAATGTA+TGG | 0.444511 | 8.2:+23173282 | MS.gene61239:CDS |
| ATCTTCTTGCTGATCTTCCC+TGG | 0.445042 | 8.2:+23173555 | MS.gene61239:CDS |
| CACAACTTCAATGTGGAGAG+TGG | 0.446422 | 8.2:-23180330 | None:intergenic |
| AGAAAGTCCTTGCATCCCTT+TGG | 0.448358 | 8.2:-23176394 | None:intergenic |
| ACATACACTGTCGTTCTTGA+AGG | 0.452167 | 8.2:+23170316 | MS.gene61239:CDS |
| CCTAAAGATGGGCCCTCGGC+AGG | 0.452190 | 8.2:+23177681 | MS.gene61239:CDS |
| GCTTATTTCTGTTCTGGAGC+TGG | 0.454575 | 8.2:+23171160 | MS.gene61239:CDS |
| TGAAGAACAACTAGCTATGT+TGG | 0.458251 | 8.2:+23171617 | MS.gene61239:CDS |
| GAAGATCAGCAAGAAGATCT+AGG | 0.458760 | 8.2:-23173550 | None:intergenic |
| TTTGTTGGACCGCCAGGTGT+CGG | 0.460488 | 8.2:+23173822 | MS.gene61239:CDS |
| TTGTGCTTTGTTGGACCGCC+AGG | 0.463797 | 8.2:+23173816 | MS.gene61239:CDS |
| GGGAAGATATCTTTGCAGTA+TGG | 0.464374 | 8.2:-23170384 | None:intergenic |
| TGTAACTTTAGTCACATCAT+TGG | 0.464635 | 8.2:+23177704 | MS.gene61239:CDS |
| CAGAACGTGTGGCTTCCCCT+GGG | 0.468031 | 8.2:+23176928 | MS.gene61239:CDS |
| ATTACCTTGGACAGATCAAA+TGG | 0.468658 | 8.2:-23175359 | None:intergenic |
| CCAATTGTCAAAATCTCAAA+AGG | 0.469700 | 8.2:+23171831 | MS.gene61239:CDS |
| ATGCCTGGGCGACTTATAGA+TGG | 0.469711 | 8.2:+23173966 | MS.gene61239:CDS |
| GCATGTTTCCATACATTTGG+TGG | 0.470979 | 8.2:-23173290 | None:intergenic |
| CAGCACGAGCCAAGGCAGCA+AGG | 0.471979 | 8.2:-23176329 | None:intergenic |
| TGATGATAGCGCCTGGTAAG+AGG | 0.472730 | 8.2:-23168409 | None:intergenic |
| GGAATTTCTTCTGCGTCAGC+AGG | 0.472870 | 8.2:+23171852 | MS.gene61239:CDS |
| ATATCAGCCAGCTTATGAAC+AGG | 0.473727 | 8.2:-23171567 | None:intergenic |
| ACTCGGAAGTTCCACCGATT+CGG | 0.474309 | 8.2:-23168354 | None:intergenic |
| TGTTGGAGGTGTTAAGGATA+AGG | 0.475298 | 8.2:+23177806 | MS.gene61239:CDS |
| CAGAGATATACCAGGGAAGC+TGG | 0.476475 | 8.2:+23176285 | MS.gene61239:CDS |
| GTTATCGCACGCACCTGCTA+GGG | 0.477013 | 8.2:-23168448 | None:intergenic |
| GCTTCACTATCATCAAATCT+TGG | 0.479669 | 8.2:-23176903 | None:intergenic |
| TCCGCTGCACTTCCCCTAGC+AGG | 0.479963 | 8.2:+23168435 | MS.gene61239:CDS |
| GAGACAACATTATGTATTCT+GGG | 0.480693 | 8.2:-23171112 | None:intergenic |
| CTGCATCTCACTGGACAACT+TGG | 0.484923 | 8.2:+23177032 | MS.gene61239:CDS |
| CAGCTCAGATTGCACTAACA+TGG | 0.485583 | 8.2:+23177072 | MS.gene61239:CDS |
| AAGGACGAAGCTGATATTAG+AGG | 0.486365 | 8.2:+23173918 | MS.gene61239:CDS |
| ACCAATGAGTGTAAATAGTC+GGG | 0.486385 | 8.2:+23176473 | MS.gene61239:CDS |
| AAAGAAGAGAAAGGGTTGAT+TGG | 0.486713 | 8.2:+23168666 | MS.gene61239:CDS |
| ACCAGCCCAACAGAGACCCC+AGG | 0.493151 | 8.2:-23176945 | None:intergenic |
| CTTTGGCAGAAAGAAGAGAA+AGG | 0.497037 | 8.2:+23168657 | MS.gene61239:CDS |
| GAACAGGAATGTTATCCAAA+AGG | 0.498724 | 8.2:-23171551 | None:intergenic |
| ATTCCGCACACCAGCTTCCC+TGG | 0.498767 | 8.2:-23176295 | None:intergenic |
| TGATGGAACTGAAGTTGAAA+TGG | 0.500438 | 8.2:+23176443 | MS.gene61239:CDS |
| TTATCCTTAACACCTCCAAC+AGG | 0.501669 | 8.2:-23177804 | None:intergenic |
| AAGGACTTTGGTTCTTCCAC+CGG | 0.502582 | 8.2:-23171532 | None:intergenic |
| ATTCAGTTGGCCCTAAATTG+AGG | 0.502662 | 8.2:+23171640 | MS.gene61239:CDS |
| CTTAGGGTTGATGCTGCAAA+GGG | 0.503370 | 8.2:+23177603 | MS.gene61239:CDS |
| CTTGATGAAGTGGACAAGAC+AGG | 0.508151 | 8.2:+23174725 | MS.gene61239:CDS |
| TGAAGTACCAGCATCGGTGC+TGG | 0.509199 | 8.2:+23179832 | MS.gene61239:CDS |
| AAGGGTGAACTGCATCTCAC+TGG | 0.510915 | 8.2:+23177023 | MS.gene61239:CDS |
| TGGCAACCTTGCGAACTGCC+AGG | 0.511819 | 8.2:-23173682 | None:intergenic |
| AAATTGGCCAGCACCGATGC+TGG | 0.513135 | 8.2:-23179839 | None:intergenic |
| AAATTTATTCGCATATCACT+TGG | 0.513862 | 8.2:+23173888 | MS.gene61239:CDS |
| GGACTAGTTCTACCTGTTGG+AGG | 0.515114 | 8.2:+23177792 | MS.gene61239:CDS |
| GGACTTTGTTTCTGAAAGGA+AGG | 0.516413 | 8.2:-23168388 | None:intergenic |
| GTCCAGCTCAATCTCTTCGC+TGG | 0.516700 | 8.2:-23173585 | None:intergenic |
| TGTTATGTTGCTTGATGAAG+TGG | 0.517092 | 8.2:+23174715 | MS.gene61239:CDS |
| AGCTACAGCAATGGTAGGGA+AGG | 0.521795 | 8.2:+23177004 | MS.gene61239:CDS |
| ACTCCCCTTGATAAATGTAA+TGG | 0.522410 | 8.2:-23170271 | None:intergenic |
| GCTCTTGAAATTAATTCAGC+GGG | 0.522960 | 8.2:+23168708 | MS.gene61239:CDS |
| AAAATTACACAGAAGGTTGA+AGG | 0.523881 | 8.2:+23171808 | MS.gene61239:CDS |
| GACTGGAGAGATGACATTGA+GGG | 0.524078 | 8.2:+23177770 | MS.gene61239:CDS |
| ATCGGTGCTGGCCAATTTGG+AGG | 0.524251 | 8.2:+23179844 | MS.gene61239:CDS |
| TAACATTCCTGTTCATAAGC+TGG | 0.524388 | 8.2:+23171560 | MS.gene61239:CDS |
| CGGGTGCTGTTCCTAAAGAT+GGG | 0.525395 | 8.2:+23177670 | MS.gene61239:CDS |
| CCCAGGCATGCTTCCAACAT+AGG | 0.526639 | 8.2:-23173952 | None:intergenic |
| TTTGTGCAGATTTAGTGTCC+TGG | 0.526821 | 8.2:+23170339 | MS.gene61239:CDS |
| AGAAACAAAGTCCTCTTACC+AGG | 0.527118 | 8.2:+23168398 | MS.gene61239:CDS |
| TTTATTCGCATATCACTTGG+TGG | 0.530008 | 8.2:+23173891 | MS.gene61239:CDS |
| AGGGGACTAGTTCTACCTGT+TGG | 0.532097 | 8.2:+23177789 | MS.gene61239:CDS |
| GAAAGAAAGATGCAGAGTGC+AGG | 0.532545 | 8.2:+23173263 | MS.gene61239:CDS |
| AGATCAGATACAGCTATGAC+TGG | 0.533312 | 8.2:+23177753 | MS.gene61239:CDS |
| TGAATACCTGGCAGTTCGCA+AGG | 0.533824 | 8.2:+23173676 | MS.gene61239:CDS |
| ACTCTGCATCTTTCTTTCAA+GGG | 0.535152 | 8.2:-23173258 | None:intergenic |
| CGGATTCTGATGATAGCGCC+TGG | 0.536961 | 8.2:-23168416 | None:intergenic |
| AACCTGGCTATAACAGTTCG+CGG | 0.537362 | 8.2:+23173522 | MS.gene61239:CDS |
| TCCACCACTTCTGGATAGGA+TGG | 0.541183 | 8.2:+23175418 | MS.gene61239:CDS |
| TCTTTCTTTCAAGGGCAACC+AGG | 0.545425 | 8.2:-23173250 | None:intergenic |
| CGTTGAGATGGCCGAATCGG+TGG | 0.547434 | 8.2:+23168343 | None:intergenic |
| AAAATGCAGCCTCAGCAACC+TGG | 0.548899 | 8.2:+23173506 | MS.gene61239:CDS |
| ATTCAGGATTGCCTCTCCGT+TGG | 0.549067 | 8.2:+23176509 | MS.gene61239:CDS |
| AAGAGGACTTTGTTTCTGAA+AGG | 0.549193 | 8.2:-23168392 | None:intergenic |
| CTGTTATAGCCAGGTTGCTG+AGG | 0.551081 | 8.2:-23173515 | None:intergenic |
| AAGTGGTTCCATTAACCAAA+GGG | 0.551695 | 8.2:+23176379 | MS.gene61239:CDS |
| CTAGCTATGTTGGATTCAGT+TGG | 0.553648 | 8.2:+23171627 | MS.gene61239:CDS |
| TACCAATCTTAGTCATCTCA+AGG | 0.554217 | 8.2:-23170405 | None:intergenic |
| TTGTTAATGAAGTGTGAAGT+TGG | 0.554342 | 8.2:+23168623 | MS.gene61239:intron |
| AGGTGTCGGGAAAACATCAT+TGG | 0.554637 | 8.2:+23173836 | MS.gene61239:CDS |
| AGTTGGTGGAACAAGAACTT+TGG | 0.556920 | 8.2:+23168640 | MS.gene61239:CDS |
| GTAGAAGCTACAGCAATGGT+AGG | 0.557139 | 8.2:+23176999 | MS.gene61239:CDS |
| TACTGCAGCAGCACGAGCCA+AGG | 0.557935 | 8.2:-23176337 | None:intergenic |
| AGTTGTAGAGCAAGAACAAG+TGG | 0.558478 | 8.2:+23176362 | MS.gene61239:CDS |
| TACCAATGAGTGTAAATAGT+CGG | 0.559381 | 8.2:+23176472 | MS.gene61239:CDS |
| ACCCGCGAACTGTTATAGCC+AGG | 0.561972 | 8.2:-23173524 | None:intergenic |
| TCTTAGGGTTGATGCTGCAA+AGG | 0.562170 | 8.2:+23177602 | MS.gene61239:CDS |
| TGAAAGGAACCTGAAAGACT+TGG | 0.563698 | 8.2:+23179808 | MS.gene61239:CDS |
| CGAGGATGATGAGGATGACC+TGG | 0.565864 | 8.2:+23173232 | MS.gene61239:CDS |
| CTTTCAGGTTCCTTTCAGGA+AGG | 0.567392 | 8.2:-23179802 | None:intergenic |
| CACAGCTTAAACCAGATGCA+AGG | 0.567590 | 8.2:+23173784 | MS.gene61239:intron |
| TGACTGGAGAGATGACATTG+AGG | 0.568509 | 8.2:+23177769 | MS.gene61239:CDS |
| GAGAGCTGCACAAAAGCGAC+TGG | 0.569386 | 8.2:+23173610 | MS.gene61239:CDS |
| TCACTATCATCAAATCTTGG+AGG | 0.570552 | 8.2:-23176900 | None:intergenic |
| ACCTGCTAGGGGAAGTGCAG+CGG | 0.572072 | 8.2:-23168436 | None:intergenic |
| ATCCTATCCAGAAGTGGTGG+AGG | 0.573191 | 8.2:-23175416 | None:intergenic |
| TTTGGCAGAAAGAAGAGAAA+GGG | 0.574512 | 8.2:+23168658 | MS.gene61239:CDS |
| GGCCAGCGAAGAGATTGAGC+TGG | 0.575625 | 8.2:+23173583 | MS.gene61239:CDS |
| GCAACGGATTATTGAATACC+TGG | 0.576917 | 8.2:+23173664 | MS.gene61239:CDS |
| GGACATAGGAGAACCTATGT+TGG | 0.577326 | 8.2:+23173939 | MS.gene61239:CDS |
| GTGTATGTGACCCTCCCACT+TGG | 0.578961 | 8.2:-23170301 | None:intergenic |
| CTCTCTTGATACCATAACGA+TGG | 0.579309 | 8.2:-23179775 | None:intergenic |
| CATATCACTTGGTGGAGTCA+AGG | 0.580443 | 8.2:+23173899 | MS.gene61239:CDS |
| ACAGCTTAAACCAGATGCAA+GGG | 0.581501 | 8.2:+23173785 | MS.gene61239:intron |
| GGACAGTGATCACTATGGTT+TGG | 0.582231 | 8.2:+23173631 | MS.gene61239:CDS |
| CCAATTCAAAGCAACAGCAA+CGG | 0.582327 | 8.2:+23171136 | MS.gene61239:CDS |
| GTCCTGGAACTTAGCACAAG+AGG | 0.584315 | 8.2:+23170355 | MS.gene61239:CDS |
| ATTTCAAGAGCATCACGCAC+GGG | 0.587352 | 8.2:-23168696 | None:intergenic |
| GGAAGGATTGCTATGCGACT+CGG | 0.588355 | 8.2:-23168371 | None:intergenic |
| TTCCTCCACCACTTCTGGAT+AGG | 0.588709 | 8.2:+23175414 | MS.gene61239:CDS |
| CCAGCCCAACAGAGACCCCA+GGG | 0.590377 | 8.2:-23176944 | None:intergenic |
| TTGATTCATAGGTAAGGGCA+AGG | 0.590864 | 8.2:+23177571 | MS.gene61239:intron |
| AGGGCTATAAAAGAAGAACT+TGG | 0.592639 | 8.2:+23173203 | MS.gene61239:CDS |
| TCGACCATTACATTTATCAA+GGG | 0.593026 | 8.2:+23170267 | MS.gene61239:CDS |
| GACTAAAGTTACACCTGCCG+AGG | 0.593125 | 8.2:-23177694 | None:intergenic |
| TCTCTTGATACCATAACGAT+GGG | 0.593930 | 8.2:-23179774 | None:intergenic |
| CGACTGGACAGTGATCACTA+TGG | 0.594203 | 8.2:+23173626 | MS.gene61239:CDS |
| TGTTCCATTTGATCTGTCCA+AGG | 0.594871 | 8.2:+23175355 | MS.gene61239:CDS |
| CAAGAGCATCACGCACGGGA+AGG | 0.596721 | 8.2:-23168692 | None:intergenic |
| CTTGGTTGAAGTACCAGCAT+CGG | 0.597941 | 8.2:+23179826 | MS.gene61239:CDS |
| TGCTCTTGAAATTAATTCAG+CGG | 0.598946 | 8.2:+23168707 | MS.gene61239:CDS |
| AGCTGAGAAAATTACACAGA+AGG | 0.599585 | 8.2:+23171801 | MS.gene61239:CDS |
| CGGTCCAACAAAGCACAACA+CGG | 0.601985 | 8.2:-23173811 | None:intergenic |
| AGCTCAGATTGCACTAACAT+GGG | 0.602580 | 8.2:+23177073 | MS.gene61239:CDS |
| CCATTAACCAAAGGGATGCA+AGG | 0.603092 | 8.2:+23176387 | MS.gene61239:CDS |
| AGTCCATCTATAAGTCGCCC+AGG | 0.604553 | 8.2:-23173969 | None:intergenic |
| AAGCAACTGAGTTAGTTGAC+AGG | 0.605193 | 8.2:+23171670 | MS.gene61239:CDS |
| TCCATCCTATCCAGAAGTGG+TGG | 0.605486 | 8.2:-23175419 | None:intergenic |
| TCGTCATCCAGAGATATACC+AGG | 0.607431 | 8.2:+23176277 | MS.gene61239:CDS |
| ACCTGGCTATAACAGTTCGC+GGG | 0.607554 | 8.2:+23173523 | MS.gene61239:CDS |
| CAAGTGGTTCCATTAACCAA+AGG | 0.608065 | 8.2:+23176378 | MS.gene61239:CDS |
| TAGAAGCTACAGCAATGGTA+GGG | 0.608661 | 8.2:+23177000 | MS.gene61239:CDS |
| AATTTCAAGAGCATCACGCA+CGG | 0.609649 | 8.2:-23168697 | None:intergenic |
| GCGACTTATAGATGGACTAA+AGG | 0.611746 | 8.2:+23173974 | MS.gene61239:CDS |
| TCTTTAGGAACAGCACCCGC+AGG | 0.612545 | 8.2:-23177666 | None:intergenic |
| GATACTGCTTGCAAAACGAA+TGG | 0.613137 | 8.2:+23180053 | MS.gene61239:intron |
| CCTATGTTGGAAGCATGCCT+GGG | 0.614479 | 8.2:+23173952 | MS.gene61239:CDS |
| ACAACTTCAATGTGGAGAGT+GGG | 0.615299 | 8.2:-23180329 | None:intergenic |
| TTAATGAAGTGTGAAGTTGG+TGG | 0.615443 | 8.2:+23168626 | MS.gene61239:intron |
| GTTTGTAGAAGCTACAGCAA+TGG | 0.618210 | 8.2:+23176995 | MS.gene61239:CDS |
| AGTAGAGAAACCAAGTGGGA+GGG | 0.619415 | 8.2:+23170291 | MS.gene61239:CDS |
| CGACCATTACATTTATCAAG+GGG | 0.619518 | 8.2:+23170268 | MS.gene61239:CDS |
| CTGGAAAATAGACTCGCTGA+TGG | 0.619559 | 8.2:+23176426 | MS.gene61239:CDS |
| GAGTAGAGAAACCAAGTGGG+AGG | 0.620927 | 8.2:+23170290 | MS.gene61239:CDS |
| TCCAGCTTCAGCATTGCTAG+AGG | 0.621147 | 8.2:+23174766 | MS.gene61239:CDS |
| ACTCAGAACTCAACCCATGT+TGG | 0.621763 | 8.2:-23175520 | None:intergenic |
| GTTTGGTGAAGGTCAAGCAA+CGG | 0.625356 | 8.2:+23173648 | MS.gene61239:CDS |
| AGAGAGTTATCCTTCCTGAA+AGG | 0.627460 | 8.2:+23179792 | MS.gene61239:CDS |
| GGTCCAACAAAGCACAACAC+GGG | 0.630838 | 8.2:-23173810 | None:intergenic |
| TCTTGGAATCAAATGCTGCA+TGG | 0.631444 | 8.2:-23175489 | None:intergenic |
| ACTTCCATCCTATCCAGAAG+TGG | 0.633390 | 8.2:-23175422 | None:intergenic |
| TGAGTTTATTCAGATTCCAG+AGG | 0.633562 | 8.2:+23175538 | MS.gene61239:CDS |
| GCTACAGCAATGGTAGGGAA+GGG | 0.635210 | 8.2:+23177005 | MS.gene61239:CDS |
| TTATCGCACGCACCTGCTAG+GGG | 0.635399 | 8.2:-23168447 | None:intergenic |
| GCGGGTCCTACTGCATCTCA+AGG | 0.637095 | 8.2:+23168726 | MS.gene61239:CDS |
| ACCAATCTTAGTCATCTCAA+GGG | 0.640184 | 8.2:-23170404 | None:intergenic |
| GAAAATGAATATGTACATCA+CGG | 0.643649 | 8.2:-23177644 | None:intergenic |
| ATGGTTTCATCAACAACCAA+CGG | 0.644244 | 8.2:-23176525 | None:intergenic |
| CTCCACATTGAAGTTGTGAG+AGG | 0.644693 | 8.2:+23180335 | MS.gene61239:CDS |
| TGTTCCTAAAGATGGGCCCT+CGG | 0.644702 | 8.2:+23177677 | MS.gene61239:CDS |
| TGATCACTATGGTTTGGTGA+AGG | 0.646174 | 8.2:+23173637 | MS.gene61239:CDS |
| AAGACAGGTTCTGATGTTCG+TGG | 0.649489 | 8.2:+23174740 | MS.gene61239:CDS |
| CAAAGCTCAAAACTTCAAGA+CGG | 0.651353 | 8.2:+23169780 | MS.gene61239:CDS |
| TGGTGATAACGAGGATGATG+AGG | 0.654194 | 8.2:+23173223 | MS.gene61239:CDS |
| ACTGGAGAGATGACATTGAG+GGG | 0.656379 | 8.2:+23177771 | MS.gene61239:CDS |
| ATATCACCTTGAGATGCAGT+AGG | 0.657145 | 8.2:-23168732 | None:intergenic |
| AGAACGTGTGGCTTCCCCTG+GGG | 0.665514 | 8.2:+23176929 | MS.gene61239:CDS |
| AGGGGAGTAGAGAAACCAAG+TGG | 0.665723 | 8.2:+23170286 | MS.gene61239:CDS |
| TGATTCATAGGTAAGGGCAA+GGG | 0.669147 | 8.2:+23177572 | MS.gene61239:intron |
| CACCTCTCACAACTTCAATG+TGG | 0.669244 | 8.2:-23180337 | None:intergenic |
| ATACCAGGGAAGCTGGTGTG+CGG | 0.672269 | 8.2:+23176292 | MS.gene61239:CDS |
| ACTAAAGTTACACCTGCCGA+GGG | 0.673565 | 8.2:-23177693 | None:intergenic |
| TTCATCAACAACCAACGGAG+AGG | 0.675839 | 8.2:-23176520 | None:intergenic |
| AAGCTGATATTAGAGGACAT+AGG | 0.677634 | 8.2:+23173925 | MS.gene61239:CDS |
| CTGGTGTGCGGAATTTGGAG+AGG | 0.678724 | 8.2:+23176304 | MS.gene61239:CDS |
| AGAAGAACTTGGTGATAACG+AGG | 0.678956 | 8.2:+23173214 | MS.gene61239:CDS |
| CAGCTTAAACCAGATGCAAG+GGG | 0.692896 | 8.2:+23173786 | MS.gene61239:intron |
| TAGTGAAGCTGCAGAACGTG+TGG | 0.701695 | 8.2:+23176917 | MS.gene61239:CDS |
| GGGGAGTAGAGAAACCAAGT+GGG | 0.705345 | 8.2:+23170287 | MS.gene61239:CDS |
| CGTCATCCAGAGATATACCA+GGG | 0.707644 | 8.2:+23176278 | MS.gene61239:CDS |
| AACATGCGCACAGAGAGTTG+AGG | 0.713139 | 8.2:+23173306 | MS.gene61239:CDS |
| CAGCCCAACAGAGACCCCAG+GGG | 0.737236 | 8.2:-23176943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 23168350 | 23180388 | 23168350 | ID=MS.gene61239 |
| chr8.2 | mRNA | 23168350 | 23180388 | 23168350 | ID=MS.gene61239.t1;Parent=MS.gene61239 |
| chr8.2 | exon | 23168350 | 23168456 | 23168350 | ID=MS.gene61239.t1.exon1;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23168350 | 23168456 | 23168350 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23168635 | 23168747 | 23168635 | ID=MS.gene61239.t1.exon2;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23168635 | 23168747 | 23168635 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23169757 | 23169865 | 23169757 | ID=MS.gene61239.t1.exon3;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23169757 | 23169865 | 23169757 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23170255 | 23170424 | 23170255 | ID=MS.gene61239.t1.exon4;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23170255 | 23170424 | 23170255 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23171090 | 23171181 | 23171090 | ID=MS.gene61239.t1.exon5;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23171090 | 23171181 | 23171090 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23171522 | 23171701 | 23171522 | ID=MS.gene61239.t1.exon6;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23171522 | 23171701 | 23171522 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23171790 | 23171873 | 23171790 | ID=MS.gene61239.t1.exon7;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23171790 | 23171873 | 23171790 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23173200 | 23173327 | 23173200 | ID=MS.gene61239.t1.exon8;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23173200 | 23173327 | 23173200 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23173496 | 23173697 | 23173496 | ID=MS.gene61239.t1.exon9;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23173496 | 23173697 | 23173496 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23173789 | 23173995 | 23173789 | ID=MS.gene61239.t1.exon10;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23173789 | 23173995 | 23173789 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23174695 | 23174825 | 23174695 | ID=MS.gene61239.t1.exon11;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23174695 | 23174825 | 23174695 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23175346 | 23175559 | 23175346 | ID=MS.gene61239.t1.exon12;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23175346 | 23175559 | 23175346 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23176264 | 23176566 | 23176264 | ID=MS.gene61239.t1.exon13;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23176264 | 23176566 | 23176264 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23176900 | 23177094 | 23176900 | ID=MS.gene61239.t1.exon14;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23176900 | 23177094 | 23176900 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23177582 | 23177827 | 23177582 | ID=MS.gene61239.t1.exon15;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23177582 | 23177827 | 23177582 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23179764 | 23179865 | 23179764 | ID=MS.gene61239.t1.exon16;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23179764 | 23179865 | 23179764 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23180054 | 23180102 | 23180054 | ID=MS.gene61239.t1.exon17;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23180054 | 23180102 | 23180054 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| chr8.2 | exon | 23180327 | 23180388 | 23180327 | ID=MS.gene61239.t1.exon18;Parent=MS.gene61239.t1 |
| chr8.2 | CDS | 23180327 | 23180388 | 23180327 | ID=cds.MS.gene61239.t1;Parent=MS.gene61239.t1 |
| Gene Sequence |
| Protein sequence |