Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005092.t1 | XP_003590981.1 | 98.4 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 1.20E-304 | 1055 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005092.t1 | G7I6T7 | 98.4 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 8.5e-305 | 1055.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene012606 | MS.gene005092 | PPI |
MS.gene061203 | MS.gene005092 | PPI |
MS.gene043858 | MS.gene005092 | PPI |
MS.gene005092 | MS.gene60887 | PPI |
MS.gene043855 | MS.gene005092 | PPI |
MS.gene60884 | MS.gene005092 | PPI |
MS.gene000191 | MS.gene005092 | PPI |
MS.gene005092 | MS.gene042257 | PPI |
MS.gene005092 | MS.gene043859 | PPI |
MS.gene60883 | MS.gene005092 | PPI |
MS.gene042258 | MS.gene005092 | PPI |
MS.gene005092 | MS.gene60888 | PPI |
MS.gene005092 | MS.gene60881 | PPI |
MS.gene005092 | MS.gene000193 | PPI |
MS.gene005092 | MS.gene60889 | PPI |
MS.gene60886 | MS.gene005092 | PPI |
MS.gene005092 | MS.gene000192 | PPI |
MS.gene005092 | MS.gene000190 | PPI |
MS.gene005092 | MS.gene33537 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005092.t1 | MTR_1g080370 | 98.571 | 560 | 8 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1147 |
MS.gene005092.t1 | MTR_1g080410 | 98.571 | 560 | 8 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1147 |
MS.gene005092.t1 | MTR_5g007860 | 55.903 | 576 | 225 | 7 | 5 | 558 | 37 | 605 | 0.0 | 667 |
MS.gene005092.t1 | MTR_4g077620 | 55.185 | 569 | 240 | 8 | 1 | 558 | 3 | 567 | 0.0 | 652 |
MS.gene005092.t1 | MTR_2g062430 | 47.434 | 565 | 265 | 12 | 6 | 558 | 8 | 552 | 1.06e-175 | 508 |
MS.gene005092.t1 | MTR_2g067640 | 45.652 | 552 | 263 | 10 | 20 | 558 | 13 | 540 | 3.33e-171 | 496 |
MS.gene005092.t1 | MTR_2g062410 | 46.196 | 552 | 270 | 10 | 18 | 558 | 50 | 585 | 6.32e-169 | 492 |
MS.gene005092.t1 | MTR_2g062370 | 45.173 | 549 | 272 | 9 | 23 | 558 | 57 | 589 | 2.32e-162 | 475 |
MS.gene005092.t1 | MTR_4g131710 | 44.828 | 551 | 273 | 10 | 23 | 558 | 51 | 585 | 1.71e-161 | 473 |
MS.gene005092.t1 | MTR_2g062380 | 45.810 | 537 | 261 | 9 | 35 | 558 | 40 | 559 | 5.19e-156 | 458 |
MS.gene005092.t1 | MTR_2g062340 | 44.689 | 546 | 243 | 9 | 23 | 558 | 20 | 516 | 2.13e-152 | 447 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005092.t1 | AT3G04350 | 64.510 | 572 | 186 | 7 | 1 | 560 | 1 | 567 | 0.0 | 759 |
MS.gene005092.t1 | AT5G18490 | 64.825 | 543 | 174 | 7 | 22 | 560 | 24 | 553 | 0.0 | 736 |
MS.gene005092.t1 | AT3G04350 | 65.421 | 535 | 171 | 6 | 35 | 560 | 16 | 545 | 0.0 | 726 |
MS.gene005092.t1 | AT1G04090 | 54.073 | 577 | 243 | 9 | 1 | 560 | 1 | 572 | 0.0 | 653 |
MS.gene005092.t1 | AT5G43950 | 53.578 | 573 | 242 | 9 | 1 | 558 | 1 | 564 | 0.0 | 629 |
MS.gene005092.t1 | AT2G44260 | 45.772 | 544 | 267 | 9 | 23 | 558 | 29 | 552 | 1.96e-169 | 492 |
MS.gene005092.t1 | AT2G44230 | 45.521 | 547 | 262 | 10 | 23 | 558 | 20 | 541 | 2.22e-168 | 489 |
MS.gene005092.t1 | AT2G44260 | 45.677 | 532 | 261 | 9 | 35 | 558 | 71 | 582 | 6.72e-164 | 479 |
MS.gene005092.t1 | AT3G01870 | 41.416 | 565 | 291 | 13 | 11 | 558 | 42 | 583 | 1.81e-140 | 419 |
MS.gene005092.t1 | AT3G01880 | 40.925 | 562 | 292 | 13 | 15 | 558 | 50 | 589 | 3.84e-138 | 413 |
Find 139 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.1:+59615064 | None:intergenic |
TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.1:-59616013 | MS.gene005092:CDS |
CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.1:-59614945 | MS.gene005092:CDS |
TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.1:-59614571 | MS.gene005092:CDS |
CACTTAATTACTCGTTAATA+TGG | 0.260129 | 1.1:-59615791 | MS.gene005092:CDS |
ATTCGATTTGGAGTTTATTA+AGG | 0.263278 | 1.1:-59614914 | MS.gene005092:CDS |
AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.1:+59614529 | None:intergenic |
GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.1:+59614813 | None:intergenic |
TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.1:+59614883 | None:intergenic |
ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.1:+59614610 | None:intergenic |
GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.1:-59615239 | MS.gene005092:CDS |
CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.1:+59615669 | None:intergenic |
TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1.1:+59615678 | None:intergenic |
ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.1:-59614926 | MS.gene005092:CDS |
ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.1:-59615755 | MS.gene005092:CDS |
TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.1:+59614538 | None:intergenic |
ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.1:-59614618 | MS.gene005092:CDS |
AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.1:+59615072 | None:intergenic |
CATGCTCTCATTGAGCATTA+CGG | 0.360621 | 1.1:-59615405 | MS.gene005092:CDS |
GGAACAATCAGCTTGAGATT+TGG | 0.364813 | 1.1:+59615842 | None:intergenic |
GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.1:+59615065 | None:intergenic |
GGATCAGAGTCAAAGAATTC+TGG | 0.378539 | 1.1:+59616628 | None:intergenic |
TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.1:-59614553 | MS.gene005092:CDS |
ATGCTCTCATTGAGCATTAC+GGG | 0.380356 | 1.1:-59615404 | MS.gene005092:CDS |
AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1.1:+59615683 | None:intergenic |
TGGAGATGCACAAATTCTAA+TGG | 0.385168 | 1.1:-59615993 | MS.gene005092:CDS |
CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.1:+59614581 | None:intergenic |
AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.1:+59616601 | None:intergenic |
AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.1:+59616600 | None:intergenic |
TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.1:-59614842 | MS.gene005092:CDS |
TGTGGTTGGTAAGAGATGTT+TGG | 0.416589 | 1.1:-59616679 | None:intergenic |
AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.1:+59615084 | None:intergenic |
TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1.1:+59615893 | None:intergenic |
GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.1:-59615144 | MS.gene005092:CDS |
CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1.1:+59615720 | None:intergenic |
CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.1:-59614826 | MS.gene005092:CDS |
CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.1:-59615025 | MS.gene005092:CDS |
TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.1:-59615026 | MS.gene005092:CDS |
CATATTAACGAGTAATTAAG+TGG | 0.438102 | 1.1:+59615792 | None:intergenic |
GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.1:-59614981 | MS.gene005092:CDS |
TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.1:+59615729 | None:intergenic |
GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.1:-59614820 | MS.gene005092:CDS |
GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1.1:+59615363 | None:intergenic |
CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1.1:+59616055 | None:intergenic |
TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.1:+59614565 | None:intergenic |
GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1.1:+59615423 | None:intergenic |
AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.1:-59615561 | MS.gene005092:CDS |
CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.1:+59615930 | None:intergenic |
GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.1:-59615875 | MS.gene005092:CDS |
TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.1:-59614944 | MS.gene005092:CDS |
CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.1:-59615115 | MS.gene005092:CDS |
GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.1:+59616607 | None:intergenic |
TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1.1:-59615193 | MS.gene005092:CDS |
ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1.1:+59615723 | None:intergenic |
TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1.1:+59615686 | None:intergenic |
ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1.1:-59614739 | MS.gene005092:CDS |
GCTCAATGAGAGCATGAATC+TGG | 0.490735 | 1.1:+59615412 | None:intergenic |
GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.1:-59614531 | MS.gene005092:CDS |
CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1.1:+59615638 | None:intergenic |
GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.1:+59615085 | None:intergenic |
GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1.1:-59616056 | MS.gene005092:CDS |
CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.1:-59615493 | MS.gene005092:CDS |
CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.1:+59614992 | None:intergenic |
TTGTTCCGAGTCAGAATCCT+TGG | 0.510563 | 1.1:-59615826 | MS.gene005092:CDS |
CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.1:-59614856 | MS.gene005092:CDS |
CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.1:+59616583 | None:intergenic |
CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.1:+59615116 | None:intergenic |
TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.1:-59615736 | MS.gene005092:CDS |
AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1.1:-59615981 | MS.gene005092:CDS |
CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.1:-59614841 | MS.gene005092:CDS |
AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.1:-59614563 | MS.gene005092:CDS |
GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.1:-59615304 | MS.gene005092:CDS |
ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.1:-59614562 | MS.gene005092:CDS |
GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.1:+59615132 | None:intergenic |
AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.1:-59615874 | MS.gene005092:CDS |
CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1.1:-59616055 | MS.gene005092:CDS |
AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.1:-59615945 | MS.gene005092:CDS |
TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.1:-59616591 | MS.gene005092:CDS |
GACTCCATCACCAAGATACT+CGG | 0.556847 | 1.1:+59614729 | None:intergenic |
TTACTCGTTAATATGGTGCA+TGG | 0.557123 | 1.1:-59615784 | MS.gene005092:CDS |
CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1.1:+59615724 | None:intergenic |
GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.1:+59614993 | None:intergenic |
ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1.1:+59615203 | None:intergenic |
CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.1:+59614664 | None:intergenic |
TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.1:-59614566 | MS.gene005092:CDS |
GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1.1:-59615192 | MS.gene005092:CDS |
TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1.1:+59615207 | None:intergenic |
ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1.1:-59615988 | MS.gene005092:CDS |
TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.1:-59615303 | MS.gene005092:CDS |
CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.1:-59615141 | MS.gene005092:CDS |
AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.1:-59615045 | MS.gene005092:CDS |
TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.1:-59615735 | MS.gene005092:CDS |
CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.1:-59614991 | MS.gene005092:CDS |
TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1.1:-59615894 | MS.gene005092:CDS |
GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.1:-59614539 | MS.gene005092:CDS |
GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1.1:+59615917 | None:intergenic |
AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.1:+59615571 | None:intergenic |
AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.1:+59615942 | None:intergenic |
ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1.1:-59615350 | MS.gene005092:CDS |
CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.1:+59614697 | None:intergenic |
AAGAGCCAAGGATTCTGACT+CGG | 0.598761 | 1.1:+59615821 | None:intergenic |
CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.1:-59616583 | MS.gene005092:intron |
GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.1:-59615261 | MS.gene005092:CDS |
GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.1:-59614690 | MS.gene005092:CDS |
CATTGAGCATTACGGGCCAA+CGG | 0.604760 | 1.1:-59615397 | MS.gene005092:CDS |
TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1.1:-59615358 | MS.gene005092:CDS |
CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1.1:-59615534 | MS.gene005092:CDS |
TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.1:-59615267 | MS.gene005092:CDS |
AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.1:-59614526 | MS.gene005092:CDS |
TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.1:-59614879 | MS.gene005092:CDS |
CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1.1:-59615720 | MS.gene005092:CDS |
GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.1:-59614545 | MS.gene005092:CDS |
CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.1:-59615249 | MS.gene005092:CDS |
TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1.1:+59615381 | None:intergenic |
GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1.1:+59615704 | None:intergenic |
CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.1:+59614827 | None:intergenic |
GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.1:-59615282 | MS.gene005092:CDS |
CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.1:-59615116 | MS.gene005092:CDS |
CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.1:-59615264 | MS.gene005092:CDS |
ATAATACCTTGTGGCCATTG+TGG | 0.625787 | 1.1:+59616577 | None:intergenic |
CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.1:+59615249 | None:intergenic |
GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.1:-59614689 | MS.gene005092:CDS |
GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.1:+59616589 | None:intergenic |
GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1.1:-59614733 | MS.gene005092:CDS |
GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.1:-59615175 | MS.gene005092:CDS |
TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.1:+59614844 | None:intergenic |
ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.1:-59614880 | MS.gene005092:CDS |
ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.1:+59615882 | None:intergenic |
TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1.1:-59615519 | MS.gene005092:CDS |
AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.1:-59615033 | MS.gene005092:CDS |
CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.1:+59615494 | None:intergenic |
AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.1:+59614660 | None:intergenic |
GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1.1:+59615552 | None:intergenic |
ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.1:-59614855 | MS.gene005092:CDS |
CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.1:-59614561 | MS.gene005092:CDS |
GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1.1:+59615898 | None:intergenic |
GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.1:-59614711 | MS.gene005092:CDS |
TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.1:-59614688 | MS.gene005092:CDS |
GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1.1:-59615546 | MS.gene005092:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAAAAATAATAGAAAA+AGG | + | chr1.1:59614634-59614653 | None:intergenic | 10.0% |
!! | AGAAAAAAATAATAGAAAAA+GGG | + | chr1.1:59614633-59614652 | None:intergenic | 10.0% |
!! | AAAAATAATAGAAAAAGGGA+AGG | + | chr1.1:59614629-59614648 | None:intergenic | 20.0% |
!!! | AATACTATTTGATTTCGTTT+TGG | - | chr1.1:59614997-59615016 | MS.gene005092:CDS | 20.0% |
!!! | ATATTTGTGCTGTTTTTTAT+TGG | - | chr1.1:59614787-59614806 | MS.gene005092:CDS | 20.0% |
!!! | TGCTAAAAGTAATTTTATTC+TGG | - | chr1.1:59616392-59616411 | MS.gene005092:intron | 20.0% |
! | ACAGAAAACCTAACAAATAT+TGG | + | chr1.1:59616567-59616586 | None:intergenic | 25.0% |
! | ATAGTTTATTCATCAAGACA+TGG | - | chr1.1:59616294-59616313 | MS.gene005092:intron | 25.0% |
! | CACTTAATTACTCGTTAATA+TGG | - | chr1.1:59615383-59615402 | MS.gene005092:CDS | 25.0% |
! | CATATTAACGAGTAATTAAG+TGG | + | chr1.1:59615385-59615404 | None:intergenic | 25.0% |
! | CTGTTGGAAATAATTCAAAA+AGG | + | chr1.1:59616596-59616615 | None:intergenic | 25.0% |
! | TAAACAAGTTTGAGAAAGTT+TGG | - | chr1.1:59615161-59615180 | MS.gene005092:CDS | 25.0% |
! | TAGTTTATTCATCAAGACAT+GGG | - | chr1.1:59616295-59616314 | MS.gene005092:intron | 25.0% |
! | TGTCTTGATGAATAAACTAT+TGG | + | chr1.1:59616294-59616313 | None:intergenic | 25.0% |
!! | ATGATGAATGTGTTTACTTT+TGG | - | chr1.1:59615419-59615438 | MS.gene005092:CDS | 25.0% |
!! | GGTATTACTGTGATTAATTT+TGG | - | chr1.1:59614808-59614827 | MS.gene005092:CDS | 25.0% |
!! | TTACTGTGTTCTTTCTATTT+TGG | - | chr1.1:59614717-59614736 | MS.gene005092:CDS | 25.0% |
!! | TTTCACATTTTATAGACCTT+TGG | - | chr1.1:59615216-59615235 | MS.gene005092:CDS | 25.0% |
!!! | AATATTTGTTAGGTTTTCTG+TGG | - | chr1.1:59616566-59616585 | MS.gene005092:intron | 25.0% |
!!! | ATTCGATTTGGAGTTTATTA+AGG | - | chr1.1:59616260-59616279 | MS.gene005092:intron | 25.0% |
!!! | GTAGTATTTTTTGCAGATAT+TGG | - | chr1.1:59614836-59614855 | MS.gene005092:CDS | 25.0% |
!!! | TTTGAGTTGATGATTAAAAC+AGG | + | chr1.1:59614680-59614699 | None:intergenic | 25.0% |
!!! | TTTGATTTCGTTTTGGTTAT+TGG | - | chr1.1:59615004-59615023 | MS.gene005092:CDS | 25.0% |
AACATTGAGATGAACAAGAT+CGG | - | chr1.1:59616129-59616148 | MS.gene005092:intron | 30.0% | |
ACATGCTTCCAATATTTGTT+AGG | - | chr1.1:59616556-59616575 | MS.gene005092:intron | 30.0% | |
AGAAAAATTCTTTCCAGGTT+TGG | - | chr1.1:59615590-59615609 | MS.gene005092:CDS | 30.0% | |
AGAACGTGAATCATATACAA+TGG | + | chr1.1:59616517-59616536 | None:intergenic | 30.0% | |
ATGCACAAATTCTAATGGAA+AGG | - | chr1.1:59615186-59615205 | MS.gene005092:CDS | 30.0% | |
CTTTACTGATATTGCAATGT+GGG | - | chr1.1:59616059-59616078 | MS.gene005092:CDS | 30.0% | |
GCGAGAAATAATCTTAAGAA+GGG | - | chr1.1:59615982-59616001 | MS.gene005092:CDS | 30.0% | |
GGTAAAGCTATAGATTATCA+CGG | - | chr1.1:59615892-59615911 | MS.gene005092:CDS | 30.0% | |
GTCAAAGAAAAATTCTTTCC+AGG | - | chr1.1:59615585-59615604 | MS.gene005092:CDS | 30.0% | |
GTTCATCAATGACACTTTAA+GGG | + | chr1.1:59616112-59616131 | None:intergenic | 30.0% | |
TGCGAGAAATAATCTTAAGA+AGG | - | chr1.1:59615981-59616000 | MS.gene005092:CDS | 30.0% | |
TGTTCATCAATGACACTTTA+AGG | + | chr1.1:59616113-59616132 | None:intergenic | 30.0% | |
! | ATTATTTCTCGCATCTTCAT+CGG | + | chr1.1:59615974-59615993 | None:intergenic | 30.0% |
!! | TGTAACTTGTATTTTCCCAA+GGG | + | chr1.1:59615137-59615156 | None:intergenic | 30.0% |
!! | TTGTAACTTGTATTTTCCCA+AGG | + | chr1.1:59615138-59615157 | None:intergenic | 30.0% |
CACTTGTTCAGAATCAAAGT+AGG | + | chr1.1:59615683-59615702 | None:intergenic | 35.0% | |
CATCGAACTTCTTCAACTTT+CGG | + | chr1.1:59615508-59615527 | None:intergenic | 35.0% | |
CCACATTGCAATATCAGTAA+AGG | + | chr1.1:59616061-59616080 | None:intergenic | 35.0% | |
CCTTTACTGATATTGCAATG+TGG | - | chr1.1:59616058-59616077 | MS.gene005092:CDS | 35.0% | |
CGTGAATCATATACAATGGT+AGG | + | chr1.1:59616513-59616532 | None:intergenic | 35.0% | |
CTACTTTGATTCTGAACAAG+TGG | - | chr1.1:59615681-59615700 | MS.gene005092:CDS | 35.0% | |
CTCACAAACTTCTGTTAGAT+CGG | + | chr1.1:59615539-59615558 | None:intergenic | 35.0% | |
CTCATATATTGCAACCAACA+TGG | + | chr1.1:59616480-59616499 | None:intergenic | 35.0% | |
GTTCATGTAAAACCAGCATT+AGG | - | chr1.1:59616030-59616049 | MS.gene005092:CDS | 35.0% | |
GTTGCAATATATGAGAGAGT+GGG | - | chr1.1:59616485-59616504 | MS.gene005092:intron | 35.0% | |
TCAGGATGAAAATATACCGT+TGG | + | chr1.1:59615796-59615815 | None:intergenic | 35.0% | |
TGAGAAATACATGCCATCAT+CGG | - | chr1.1:59615816-59615835 | MS.gene005092:CDS | 35.0% | |
TGGAGATGCACAAATTCTAA+TGG | - | chr1.1:59615181-59615200 | MS.gene005092:CDS | 35.0% | |
TTACTCGTTAATATGGTGCA+TGG | - | chr1.1:59615390-59615409 | MS.gene005092:CDS | 35.0% | |
TTATTTCCAACAGAGCTTTC+TGG | - | chr1.1:59616603-59616622 | MS.gene005092:CDS | 35.0% | |
TTGCAATATATGAGAGAGTG+GGG | - | chr1.1:59616486-59616505 | MS.gene005092:intron | 35.0% | |
! | ATGGGTTAATGCATTCGATT+TGG | - | chr1.1:59616248-59616267 | MS.gene005092:intron | 35.0% |
! | TGGAGCAATTTTGTATACTG+CGG | - | chr1.1:59615858-59615877 | MS.gene005092:CDS | 35.0% |
!! | AATTCTAATGGAAAGGCACT+AGG | - | chr1.1:59615193-59615212 | MS.gene005092:CDS | 35.0% |
!! | AGGTTGATGATAATACCTTG+TGG | + | chr1.1:59614609-59614628 | None:intergenic | 35.0% |
!! | GATATAATGATGGTGCGTTT+TGG | - | chr1.1:59615935-59615954 | MS.gene005092:CDS | 35.0% |
!!! | TGGTTTTGAGTGTTCTTGTT+GGG | - | chr1.1:59614515-59614534 | MS.gene005092:CDS | 35.0% |
!!! | TTGGTTTTGAGTGTTCTTGT+TGG | - | chr1.1:59614514-59614533 | MS.gene005092:CDS | 35.0% |
AAAAACAGACCAAAGCTCTC+CGG | + | chr1.1:59616205-59616224 | None:intergenic | 40.0% | |
AACAAGATCGGTGAACATGT+CGG | - | chr1.1:59616141-59616160 | MS.gene005092:intron | 40.0% | |
AACTTTCGGTTCATCTGGAT+TGG | + | chr1.1:59615494-59615513 | None:intergenic | 40.0% | |
AAGAGGTGAAGGAAGAGAAA+AGG | + | chr1.1:59614577-59614596 | None:intergenic | 40.0% | |
AAGGTTGTGTATTCCAAACC+TGG | + | chr1.1:59615606-59615625 | None:intergenic | 40.0% | |
AATACACAACCTTGCGATAG+AGG | - | chr1.1:59615613-59615632 | MS.gene005092:CDS | 40.0% | |
AGAGGTGAAGGAAGAGAAAA+GGG | + | chr1.1:59614576-59614595 | None:intergenic | 40.0% | |
ATAATACCTTGTGGCCATTG+TGG | + | chr1.1:59614600-59614619 | None:intergenic | 40.0% | |
ATGCTCTCATTGAGCATTAC+GGG | - | chr1.1:59615770-59615789 | MS.gene005092:CDS | 40.0% | |
CATGCTCTCATTGAGCATTA+CGG | - | chr1.1:59615769-59615788 | MS.gene005092:CDS | 40.0% | |
CATGTAAAACCAGCATTAGG+AGG | - | chr1.1:59616033-59616052 | MS.gene005092:CDS | 40.0% | |
GAGTCATTACAGAACCATGT+TGG | - | chr1.1:59616463-59616482 | MS.gene005092:intron | 40.0% | |
GATGGCATGTATTTCTCATC+AGG | + | chr1.1:59615814-59615833 | None:intergenic | 40.0% | |
GCATGAATCTGGTTGAGATT+CGG | + | chr1.1:59615754-59615773 | None:intergenic | 40.0% | |
GGAACAATCAGCTTGAGATT+TGG | + | chr1.1:59615335-59615354 | None:intergenic | 40.0% | |
GGATCAGAGTCAAAGAATTC+TGG | + | chr1.1:59614549-59614568 | None:intergenic | 40.0% | |
GGATCATCCAAACTTGGAAT+AGG | - | chr1.1:59616354-59616373 | MS.gene005092:intron | 40.0% | |
GGTTGCAATATATGAGAGAG+TGG | - | chr1.1:59616484-59616503 | MS.gene005092:intron | 40.0% | |
TATACTGCGGGTAATGCAAA+GGG | - | chr1.1:59615871-59615890 | MS.gene005092:CDS | 40.0% | |
TATCACGGCACAAATTTACC+TGG | - | chr1.1:59615907-59615926 | MS.gene005092:CDS | 40.0% | |
TCTTCAACTTTCGGTTCATC+TGG | + | chr1.1:59615499-59615518 | None:intergenic | 40.0% | |
! | AATCCATCTGGAATCTCCAA+AGG | + | chr1.1:59615235-59615254 | None:intergenic | 40.0% |
! | AATGACACTTTAAGGGTTGC+AGG | + | chr1.1:59616105-59616124 | None:intergenic | 40.0% |
! | GGAGCAATTTTGTATACTGC+GGG | - | chr1.1:59615859-59615878 | MS.gene005092:CDS | 40.0% |
! | TTATAACCCTTTGGAGGGTT+AGG | + | chr1.1:59615448-59615467 | None:intergenic | 40.0% |
!! | AAGTGGCTTTTTAAGAGCCA+AGG | + | chr1.1:59615368-59615387 | None:intergenic | 40.0% |
!!! | GTGTCGTGGTTTTTCAAGAA+TGG | - | chr1.1:59615838-59615857 | MS.gene005092:CDS | 40.0% |
!!! | GTTTTTTTCTCTGAGCACAG+TGG | - | chr1.1:59616219-59616238 | MS.gene005092:intron | 40.0% |
!!! | TGGGTTTTTTGCCCATTCAA+TGG | - | chr1.1:59616078-59616097 | MS.gene005092:intron | 40.0% |
AAAAACCACGACACCGATGA+TGG | + | chr1.1:59615832-59615851 | None:intergenic | 45.0% | |
AAGAGCCAAGGATTCTGACT+CGG | + | chr1.1:59615356-59615375 | None:intergenic | 45.0% | |
AAGGAGAAGGACAATTGGCT+AGG | - | chr1.1:59616648-59616667 | MS.gene005092:CDS | 45.0% | |
AGCCAATTGTCCTTCTCCTT+TGG | + | chr1.1:59616648-59616667 | None:intergenic | 45.0% | |
AGCTTGTGAGTGATCTACTC+AGG | - | chr1.1:59615085-59615104 | MS.gene005092:CDS | 45.0% | |
ATGCTAGCTATCCTCATGCA+GGG | - | chr1.1:59616319-59616338 | MS.gene005092:intron | 45.0% | |
ATTGTTGCTGCCGAGTATCT+TGG | - | chr1.1:59616435-59616454 | MS.gene005092:intron | 45.0% | |
CAAGTTTGGATGATCCCTGA+AGG | + | chr1.1:59616350-59616369 | None:intergenic | 45.0% | |
CCAAAGGGTTATAAAGCCGT+CGG | - | chr1.1:59615454-59615473 | MS.gene005092:CDS | 45.0% | |
CCAAGACAGGAAAATCCATC+TGG | + | chr1.1:59615247-59615266 | None:intergenic | 45.0% | |
CCATCATTATATCCTCCACC+AGG | + | chr1.1:59615928-59615947 | None:intergenic | 45.0% | |
CCTGGTGGAGGATATAATGA+TGG | - | chr1.1:59615925-59615944 | MS.gene005092:CDS | 45.0% | |
CTTCAGGGATCATCCAAACT+TGG | - | chr1.1:59616348-59616367 | MS.gene005092:intron | 45.0% | |
GAAGGAAGAGAAAAGGGAAG+TGG | + | chr1.1:59614570-59614589 | None:intergenic | 45.0% | |
GAAGGGAAACATAGAGAGTG+CGG | - | chr1.1:59615999-59616018 | MS.gene005092:CDS | 45.0% | |
GACTCCATCACCAAGATACT+CGG | + | chr1.1:59616448-59616467 | None:intergenic | 45.0% | |
GCGAACTCCTATTCCAAGTT+TGG | + | chr1.1:59616364-59616383 | None:intergenic | 45.0% | |
GTATACTGCGGGTAATGCAA+AGG | - | chr1.1:59615870-59615889 | MS.gene005092:CDS | 45.0% | |
GTCCAAAGGAGAAGGACAAT+TGG | - | chr1.1:59616643-59616662 | MS.gene005092:CDS | 45.0% | |
TCTGTCGGAACATTCTTCTG+TGG | - | chr1.1:59615655-59615674 | MS.gene005092:CDS | 45.0% | |
TGAGCACAGTGGAGGTAAAT+GGG | - | chr1.1:59616230-59616249 | MS.gene005092:intron | 45.0% | |
TTCCTTCACCTCTTCCACAA+TGG | - | chr1.1:59614583-59614602 | MS.gene005092:CDS | 45.0% | |
TTGTGAGTGATCTACTCAGG+TGG | - | chr1.1:59615088-59615107 | MS.gene005092:CDS | 45.0% | |
TTGTTCCGAGTCAGAATCCT+TGG | - | chr1.1:59615348-59615367 | MS.gene005092:CDS | 45.0% | |
TTTCTCGCATCTTCATCGGT+AGG | + | chr1.1:59615970-59615989 | None:intergenic | 45.0% | |
! | ACGGCTTTATAACCCTTTGG+AGG | + | chr1.1:59615454-59615473 | None:intergenic | 45.0% |
! | AGACCTTTGGAGATTCCAGA+TGG | - | chr1.1:59615229-59615248 | MS.gene005092:CDS | 45.0% |
! | CGGCTTTATAACCCTTTGGA+GGG | + | chr1.1:59615453-59615472 | None:intergenic | 45.0% |
! | CTAGCTAGAGGTGTATCTGT+CGG | - | chr1.1:59615640-59615659 | MS.gene005092:CDS | 45.0% |
! | GATAGAGGTATGCTAGCTAG+AGG | - | chr1.1:59615628-59615647 | MS.gene005092:CDS | 45.0% |
! | GCTCAATGAGAGCATGAATC+TGG | + | chr1.1:59615765-59615784 | None:intergenic | 45.0% |
! | TTTCGGTTCATCTGGATTGG+TGG | + | chr1.1:59615491-59615510 | None:intergenic | 45.0% |
! | TTTTTCTCTGAGCACAGTGG+AGG | - | chr1.1:59616222-59616241 | MS.gene005092:intron | 45.0% |
!! | CCAGATGGATTTTCCTGTCT+TGG | - | chr1.1:59615244-59615263 | MS.gene005092:CDS | 45.0% |
ACAAGAACGTGTCCTCGCAA+CGG | + | chr1.1:59615295-59615314 | None:intergenic | 50.0% | |
AGGGTTGCAGGTCCATTGAA+TGG | + | chr1.1:59616093-59616112 | None:intergenic | 50.0% | |
CACGGCACAAATTTACCTGG+TGG | - | chr1.1:59615910-59615929 | MS.gene005092:CDS | 50.0% | |
CATGCAGGGACTTACCTTCA+GGG | - | chr1.1:59616333-59616352 | MS.gene005092:intron | 50.0% | |
CATGCTAGCTATCCTCATGC+AGG | - | chr1.1:59616318-59616337 | MS.gene005092:intron | 50.0% | |
CATTGAGCATTACGGGCCAA+CGG | - | chr1.1:59615777-59615796 | MS.gene005092:CDS | 50.0% | |
CCCAAGGGATATTCTTCCAC+CGG | + | chr1.1:59615122-59615141 | None:intergenic | 50.0% | |
CCGGTGGAAGAATATCCCTT+GGG | - | chr1.1:59615119-59615138 | MS.gene005092:CDS | 50.0% | |
CGGTGAACATGTCGGTGATT+GGG | - | chr1.1:59616149-59616168 | MS.gene005092:intron | 50.0% | |
CTGAGCACAGTGGAGGTAAA+TGG | - | chr1.1:59616229-59616248 | MS.gene005092:intron | 50.0% | |
GCTAGCATACCTCTATCGCA+AGG | + | chr1.1:59615625-59615644 | None:intergenic | 50.0% | |
GGCACAAATTTACCTGGTGG+AGG | - | chr1.1:59615913-59615932 | MS.gene005092:CDS | 50.0% | |
GGGTTGCAGGTCCATTGAAT+GGG | + | chr1.1:59616092-59616111 | None:intergenic | 50.0% | |
GGTGGTAACTACTATGCCGA+CGG | + | chr1.1:59615473-59615492 | None:intergenic | 50.0% | |
GTAAAGGCTCCTCCTAATGC+TGG | + | chr1.1:59616045-59616064 | None:intergenic | 50.0% | |
GTGGCAGTAGTAACCAAGAC+AGG | + | chr1.1:59615260-59615279 | None:intergenic | 50.0% | |
TCATGCAGGGACTTACCTTC+AGG | - | chr1.1:59616332-59616351 | MS.gene005092:intron | 50.0% | |
TCCTCACCAGAAAGCTCTGT+TGG | + | chr1.1:59616612-59616631 | None:intergenic | 50.0% | |
TCCTTCTCCTTTGGACCAGT+TGG | + | chr1.1:59616639-59616658 | None:intergenic | 50.0% | |
TCGGTGAACATGTCGGTGAT+TGG | - | chr1.1:59616148-59616167 | MS.gene005092:intron | 50.0% | |
TGAAGGTAAGTCCCTGCATG+AGG | + | chr1.1:59616333-59616352 | None:intergenic | 50.0% | |
TGAGTGATCTACTCAGGTGG+TGG | - | chr1.1:59615091-59615110 | MS.gene005092:CDS | 50.0% | |
TGGTTGCCTAACCCTCCAAA+GGG | - | chr1.1:59615439-59615458 | MS.gene005092:CDS | 50.0% | |
TTGGTTGCCTAACCCTCCAA+AGG | - | chr1.1:59615438-59615457 | MS.gene005092:CDS | 50.0% | |
! | AACAGAGCTTTCTGGTGAGG+AGG | - | chr1.1:59616611-59616630 | MS.gene005092:CDS | 50.0% |
! | ACAGAGCTTTCTGGTGAGGA+GGG | - | chr1.1:59616612-59616631 | MS.gene005092:CDS | 50.0% |
! | CCGACGGCTTTATAACCCTT+TGG | + | chr1.1:59615457-59615476 | None:intergenic | 50.0% |
! | TCCAACAGAGCTTTCTGGTG+AGG | - | chr1.1:59616608-59616627 | MS.gene005092:CDS | 50.0% |
!! | TACTCAGGTGGTGGTTTTGC+CGG | - | chr1.1:59615100-59615119 | MS.gene005092:CDS | 50.0% |
AGGACACGTTCTTGTCGCTC+GGG | - | chr1.1:59615300-59615319 | MS.gene005092:CDS | 55.0% | |
CCTCTTCCACAATGGCCACA+AGG | - | chr1.1:59614591-59614610 | MS.gene005092:CDS | 55.0% | |
CCTTGTGGCCATTGTGGAAG+AGG | + | chr1.1:59614594-59614613 | None:intergenic | 55.0% | |
CTTCGCGTGAGCAACTTCAC+CGG | - | chr1.1:59616183-59616202 | MS.gene005092:intron | 55.0% | |
GAGGACACGTTCTTGTCGCT+CGG | - | chr1.1:59615299-59615318 | MS.gene005092:CDS | 55.0% | |
GCAACGGCTGATCATTGGAG+TGG | + | chr1.1:59615279-59615298 | None:intergenic | 55.0% | |
GCAACTTCACCGGAGAGCTT+TGG | - | chr1.1:59616193-59616212 | MS.gene005092:intron | 55.0% | |
GCCAACTGGTCCAAAGGAGA+AGG | - | chr1.1:59616635-59616654 | MS.gene005092:CDS | 55.0% | |
GCCGGTGGAAGAATATCCCT+TGG | - | chr1.1:59615118-59615137 | MS.gene005092:CDS | 55.0% | |
GCTGCCGAGTATCTTGGTGA+TGG | - | chr1.1:59616441-59616460 | MS.gene005092:intron | 55.0% | |
GGCCATTGTGGAAGAGGTGA+AGG | + | chr1.1:59614588-59614607 | None:intergenic | 55.0% | |
GGTGAAGTTGCTCACGCGAA+GGG | + | chr1.1:59616184-59616203 | None:intergenic | 55.0% | |
TCCAATGATCAGCCGTTGCG+AGG | - | chr1.1:59615280-59615299 | MS.gene005092:CDS | 55.0% | |
TCCTCGCAACGGCTGATCAT+TGG | + | chr1.1:59615284-59615303 | None:intergenic | 55.0% | |
! | CAGAGCTTTCTGGTGAGGAG+GGG | - | chr1.1:59616613-59616632 | MS.gene005092:CDS | 55.0% |
!! | ACATGCCATCATCGGTGTCG+TGG | - | chr1.1:59615824-59615843 | MS.gene005092:CDS | 55.0% |
CGGTGAAGTTGCTCACGCGA+AGG | + | chr1.1:59616185-59616204 | None:intergenic | 60.0% | |
!! | TCAGGTGGTGGTTTTGCCGG+TGG | - | chr1.1:59615103-59615122 | MS.gene005092:CDS | 60.0% |
GGAGGGGCCAACTGGTCCAA+AGG | - | chr1.1:59616629-59616648 | MS.gene005092:CDS | 65.0% | |
TCTGGTGAGGAGGGGCCAAC+TGG | - | chr1.1:59616621-59616640 | MS.gene005092:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 59614510 | 59616686 | 59614510 | ID=MS.gene005092 |
chr1.1 | mRNA | 59614510 | 59616686 | 59614510 | ID=MS.gene005092.t1;Parent=MS.gene005092 |
chr1.1 | exon | 59616584 | 59616686 | 59616584 | ID=MS.gene005092.t1.exon1;Parent=MS.gene005092.t1 |
chr1.1 | CDS | 59616584 | 59616686 | 59616584 | ID=cds.MS.gene005092.t1;Parent=MS.gene005092.t1 |
chr1.1 | exon | 59614510 | 59616089 | 59614510 | ID=MS.gene005092.t1.exon2;Parent=MS.gene005092.t1 |
chr1.1 | CDS | 59614510 | 59616089 | 59614510 | ID=cds.MS.gene005092.t1;Parent=MS.gene005092.t1 |
Gene Sequence |
Protein sequence |