AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005092


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005092.t1 MTR_1g080370 98.571 560 8 0 1 560 1 560 0.0 1147
MS.gene005092.t1 MTR_1g080410 98.571 560 8 0 1 560 1 560 0.0 1147
MS.gene005092.t1 MTR_5g007860 55.903 576 225 7 5 558 37 605 0.0 667
MS.gene005092.t1 MTR_4g077620 55.185 569 240 8 1 558 3 567 0.0 652
MS.gene005092.t1 MTR_2g062430 47.434 565 265 12 6 558 8 552 1.06e-175 508
MS.gene005092.t1 MTR_2g067640 45.652 552 263 10 20 558 13 540 3.33e-171 496
MS.gene005092.t1 MTR_2g062410 46.196 552 270 10 18 558 50 585 6.32e-169 492
MS.gene005092.t1 MTR_2g062370 45.173 549 272 9 23 558 57 589 2.32e-162 475
MS.gene005092.t1 MTR_4g131710 44.828 551 273 10 23 558 51 585 1.71e-161 473
MS.gene005092.t1 MTR_2g062380 45.810 537 261 9 35 558 40 559 5.19e-156 458
MS.gene005092.t1 MTR_2g062340 44.689 546 243 9 23 558 20 516 2.13e-152 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005092.t1 AT3G04350 64.510 572 186 7 1 560 1 567 0.0 759
MS.gene005092.t1 AT5G18490 64.825 543 174 7 22 560 24 553 0.0 736
MS.gene005092.t1 AT3G04350 65.421 535 171 6 35 560 16 545 0.0 726
MS.gene005092.t1 AT1G04090 54.073 577 243 9 1 560 1 572 0.0 653
MS.gene005092.t1 AT5G43950 53.578 573 242 9 1 558 1 564 0.0 629
MS.gene005092.t1 AT2G44260 45.772 544 267 9 23 558 29 552 1.96e-169 492
MS.gene005092.t1 AT2G44230 45.521 547 262 10 23 558 20 541 2.22e-168 489
MS.gene005092.t1 AT2G44260 45.677 532 261 9 35 558 71 582 6.72e-164 479
MS.gene005092.t1 AT3G01870 41.416 565 291 13 11 558 42 583 1.81e-140 419
MS.gene005092.t1 AT3G01880 40.925 562 292 13 15 558 50 589 3.84e-138 413

Find 139 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCATCAATGACACTTTA+AGG 0.107306 1.1:+59615064 None:intergenic
TAAACAAGTTTGAGAAAGTT+TGG 0.235719 1.1:-59616013 MS.gene005092:CDS
CTGAGCACAGTGGAGGTAAA+TGG 0.247800 1.1:-59614945 MS.gene005092:CDS
TTATTTCCAACAGAGCTTTC+TGG 0.254169 1.1:-59614571 MS.gene005092:CDS
CACTTAATTACTCGTTAATA+TGG 0.260129 1.1:-59615791 MS.gene005092:CDS
ATTCGATTTGGAGTTTATTA+AGG 0.263278 1.1:-59614914 MS.gene005092:CDS
AGCCAATTGTCCTTCTCCTT+TGG 0.307063 1.1:+59614529 None:intergenic
GCGAACTCCTATTCCAAGTT+TGG 0.314359 1.1:+59614813 None:intergenic
TGTCTTGATGAATAAACTAT+TGG 0.322222 1.1:+59614883 None:intergenic
ACAGAAAACCTAACAAATAT+TGG 0.329471 1.1:+59614610 None:intergenic
GATATAATGATGGTGCGTTT+TGG 0.329648 1.1:-59615239 MS.gene005092:CDS
CATCGAACTTCTTCAACTTT+CGG 0.340671 1.1:+59615669 None:intergenic
TCTTCAACTTTCGGTTCATC+TGG 0.342527 1.1:+59615678 None:intergenic
ATGGGTTAATGCATTCGATT+TGG 0.345620 1.1:-59614926 MS.gene005092:CDS
ATGATGAATGTGTTTACTTT+TGG 0.348745 1.1:-59615755 MS.gene005092:CDS
TCCTTCTCCTTTGGACCAGT+TGG 0.349557 1.1:+59614538 None:intergenic
ACATGCTTCCAATATTTGTT+AGG 0.353415 1.1:-59614618 MS.gene005092:CDS
AATGACACTTTAAGGGTTGC+AGG 0.360391 1.1:+59615072 None:intergenic
CATGCTCTCATTGAGCATTA+CGG 0.360621 1.1:-59615405 MS.gene005092:CDS
GGAACAATCAGCTTGAGATT+TGG 0.364813 1.1:+59615842 None:intergenic
GTTCATCAATGACACTTTAA+GGG 0.377575 1.1:+59615065 None:intergenic
GGATCAGAGTCAAAGAATTC+TGG 0.378539 1.1:+59616628 None:intergenic
TCTGGTGAGGAGGGGCCAAC+TGG 0.379305 1.1:-59614553 MS.gene005092:CDS
ATGCTCTCATTGAGCATTAC+GGG 0.380356 1.1:-59615404 MS.gene005092:CDS
AACTTTCGGTTCATCTGGAT+TGG 0.384698 1.1:+59615683 None:intergenic
TGGAGATGCACAAATTCTAA+TGG 0.385168 1.1:-59615993 MS.gene005092:CDS
CTGTTGGAAATAATTCAAAA+AGG 0.390774 1.1:+59614581 None:intergenic
AGAGGTGAAGGAAGAGAAAA+GGG 0.395917 1.1:+59616601 None:intergenic
AAGAGGTGAAGGAAGAGAAA+AGG 0.400057 1.1:+59616600 None:intergenic
TCATGCAGGGACTTACCTTC+AGG 0.415789 1.1:-59614842 MS.gene005092:CDS
TGTGGTTGGTAAGAGATGTT+TGG 0.416589 1.1:-59616679 None:intergenic
AGGGTTGCAGGTCCATTGAA+TGG 0.426014 1.1:+59615084 None:intergenic
TCCTCGCAACGGCTGATCAT+TGG 0.426252 1.1:+59615893 None:intergenic
GTTCATGTAAAACCAGCATT+AGG 0.426763 1.1:-59615144 MS.gene005092:CDS
CCGACGGCTTTATAACCCTT+TGG 0.428360 1.1:+59615720 None:intergenic
CTTCAGGGATCATCCAAACT+TGG 0.432488 1.1:-59614826 MS.gene005092:CDS
CGGTGAACATGTCGGTGATT+GGG 0.432674 1.1:-59615025 MS.gene005092:CDS
TCGGTGAACATGTCGGTGAT+TGG 0.434338 1.1:-59615026 MS.gene005092:CDS
CATATTAACGAGTAATTAAG+TGG 0.438102 1.1:+59615792 None:intergenic
GCAACTTCACCGGAGAGCTT+TGG 0.443367 1.1:-59614981 MS.gene005092:CDS
TTATAACCCTTTGGAGGGTT+AGG 0.448233 1.1:+59615729 None:intergenic
GGATCATCCAAACTTGGAAT+AGG 0.450282 1.1:-59614820 MS.gene005092:CDS
GATGGCATGTATTTCTCATC+AGG 0.457793 1.1:+59615363 None:intergenic
CCCAAGGGATATTCTTCCAC+CGG 0.460403 1.1:+59616055 None:intergenic
TCCTCACCAGAAAGCTCTGT+TGG 0.461764 1.1:+59614565 None:intergenic
GCATGAATCTGGTTGAGATT+CGG 0.468325 1.1:+59615423 None:intergenic
AATACACAACCTTGCGATAG+AGG 0.468770 1.1:-59615561 MS.gene005092:CDS
CCAAGACAGGAAAATCCATC+TGG 0.469039 1.1:+59615930 None:intergenic
GAGGACACGTTCTTGTCGCT+CGG 0.471944 1.1:-59615875 MS.gene005092:CDS
TGAGCACAGTGGAGGTAAAT+GGG 0.475593 1.1:-59614944 MS.gene005092:CDS
CTTTACTGATATTGCAATGT+GGG 0.475927 1.1:-59615115 MS.gene005092:CDS
GAAGGAAGAGAAAAGGGAAG+TGG 0.478043 1.1:+59616607 None:intergenic
TGCGAGAAATAATCTTAAGA+AGG 0.480833 1.1:-59615193 MS.gene005092:CDS
ACGGCTTTATAACCCTTTGG+AGG 0.486012 1.1:+59615723 None:intergenic
TTTCGGTTCATCTGGATTGG+TGG 0.487936 1.1:+59615686 None:intergenic
ATTGTTGCTGCCGAGTATCT+TGG 0.490221 1.1:-59614739 MS.gene005092:CDS
GCTCAATGAGAGCATGAATC+TGG 0.490735 1.1:+59615412 None:intergenic
GTCCAAAGGAGAAGGACAAT+TGG 0.490950 1.1:-59614531 MS.gene005092:CDS
CTCACAAACTTCTGTTAGAT+CGG 0.493970 1.1:+59615638 None:intergenic
GGGTTGCAGGTCCATTGAAT+GGG 0.500640 1.1:+59615085 None:intergenic
GCCGGTGGAAGAATATCCCT+TGG 0.503378 1.1:-59616056 MS.gene005092:CDS
CTACTTTGATTCTGAACAAG+TGG 0.505519 1.1:-59615493 MS.gene005092:CDS
CGGTGAAGTTGCTCACGCGA+AGG 0.508371 1.1:+59614992 None:intergenic
TTGTTCCGAGTCAGAATCCT+TGG 0.510563 1.1:-59615826 MS.gene005092:CDS
CATGCTAGCTATCCTCATGC+AGG 0.510869 1.1:-59614856 MS.gene005092:CDS
CCTTGTGGCCATTGTGGAAG+AGG 0.512962 1.1:+59616583 None:intergenic
CCACATTGCAATATCAGTAA+AGG 0.513990 1.1:+59615116 None:intergenic
TTGGTTGCCTAACCCTCCAA+AGG 0.523651 1.1:-59615736 MS.gene005092:CDS
AATTCTAATGGAAAGGCACT+AGG 0.529623 1.1:-59615981 MS.gene005092:CDS
CATGCAGGGACTTACCTTCA+GGG 0.530671 1.1:-59614841 MS.gene005092:CDS
AACAGAGCTTTCTGGTGAGG+AGG 0.540070 1.1:-59614563 MS.gene005092:CDS
GTATACTGCGGGTAATGCAA+AGG 0.543009 1.1:-59615304 MS.gene005092:CDS
ACAGAGCTTTCTGGTGAGGA+GGG 0.543440 1.1:-59614562 MS.gene005092:CDS
GTAAAGGCTCCTCCTAATGC+TGG 0.544725 1.1:+59615132 None:intergenic
AGGACACGTTCTTGTCGCTC+GGG 0.549143 1.1:-59615874 MS.gene005092:CDS
CCGGTGGAAGAATATCCCTT+GGG 0.549609 1.1:-59616055 MS.gene005092:CDS
AGACCTTTGGAGATTCCAGA+TGG 0.551683 1.1:-59615945 MS.gene005092:CDS
TTCCTTCACCTCTTCCACAA+TGG 0.552183 1.1:-59616591 MS.gene005092:CDS
GACTCCATCACCAAGATACT+CGG 0.556847 1.1:+59614729 None:intergenic
TTACTCGTTAATATGGTGCA+TGG 0.557123 1.1:-59615784 MS.gene005092:CDS
CGGCTTTATAACCCTTTGGA+GGG 0.557691 1.1:+59615724 None:intergenic
GGTGAAGTTGCTCACGCGAA+GGG 0.560176 1.1:+59614993 None:intergenic
ATTATTTCTCGCATCTTCAT+CGG 0.561997 1.1:+59615203 None:intergenic
CGTGAATCATATACAATGGT+AGG 0.564534 1.1:+59614664 None:intergenic
TCCAACAGAGCTTTCTGGTG+AGG 0.565118 1.1:-59614566 MS.gene005092:CDS
GCGAGAAATAATCTTAAGAA+GGG 0.567421 1.1:-59615192 MS.gene005092:CDS
TTTCTCGCATCTTCATCGGT+AGG 0.570074 1.1:+59615207 None:intergenic
ATGCACAAATTCTAATGGAA+AGG 0.570132 1.1:-59615988 MS.gene005092:CDS
TATACTGCGGGTAATGCAAA+GGG 0.571900 1.1:-59615303 MS.gene005092:CDS
CATGTAAAACCAGCATTAGG+AGG 0.572269 1.1:-59615141 MS.gene005092:CDS
AACATTGAGATGAACAAGAT+CGG 0.572272 1.1:-59615045 MS.gene005092:CDS
TGGTTGCCTAACCCTCCAAA+GGG 0.582899 1.1:-59615735 MS.gene005092:CDS
CTTCGCGTGAGCAACTTCAC+CGG 0.582952 1.1:-59614991 MS.gene005092:CDS
TCCAATGATCAGCCGTTGCG+AGG 0.585934 1.1:-59615894 MS.gene005092:CDS
GCCAACTGGTCCAAAGGAGA+AGG 0.588714 1.1:-59614539 MS.gene005092:CDS
GTGGCAGTAGTAACCAAGAC+AGG 0.592567 1.1:+59615917 None:intergenic
AAGGTTGTGTATTCCAAACC+TGG 0.594362 1.1:+59615571 None:intergenic
AATCCATCTGGAATCTCCAA+AGG 0.594832 1.1:+59615942 None:intergenic
ACATGCCATCATCGGTGTCG+TGG 0.595421 1.1:-59615350 MS.gene005092:CDS
CTCATATATTGCAACCAACA+TGG 0.598495 1.1:+59614697 None:intergenic
AAGAGCCAAGGATTCTGACT+CGG 0.598761 1.1:+59615821 None:intergenic
CCTCTTCCACAATGGCCACA+AGG 0.602749 1.1:-59616583 MS.gene005092:intron
GGCACAAATTTACCTGGTGG+AGG 0.603301 1.1:-59615261 MS.gene005092:CDS
GGTTGCAATATATGAGAGAG+TGG 0.604682 1.1:-59614690 MS.gene005092:CDS
CATTGAGCATTACGGGCCAA+CGG 0.604760 1.1:-59615397 MS.gene005092:CDS
TGAGAAATACATGCCATCAT+CGG 0.607689 1.1:-59615358 MS.gene005092:CDS
CTAGCTAGAGGTGTATCTGT+CGG 0.607900 1.1:-59615534 MS.gene005092:CDS
TATCACGGCACAAATTTACC+TGG 0.610377 1.1:-59615267 MS.gene005092:CDS
AAGGAGAAGGACAATTGGCT+AGG 0.611868 1.1:-59614526 MS.gene005092:CDS
TAGTTTATTCATCAAGACAT+GGG 0.614112 1.1:-59614879 MS.gene005092:CDS
CCAAAGGGTTATAAAGCCGT+CGG 0.615266 1.1:-59615720 MS.gene005092:CDS
GGAGGGGCCAACTGGTCCAA+AGG 0.615580 1.1:-59614545 MS.gene005092:CDS
CCTGGTGGAGGATATAATGA+TGG 0.615594 1.1:-59615249 MS.gene005092:CDS
TCAGGATGAAAATATACCGT+TGG 0.617396 1.1:+59615381 None:intergenic
GGTGGTAACTACTATGCCGA+CGG 0.618472 1.1:+59615704 None:intergenic
CAAGTTTGGATGATCCCTGA+AGG 0.618933 1.1:+59614827 None:intergenic
GGTAAAGCTATAGATTATCA+CGG 0.619614 1.1:-59615282 MS.gene005092:CDS
CCTTTACTGATATTGCAATG+TGG 0.624376 1.1:-59615116 MS.gene005092:CDS
CACGGCACAAATTTACCTGG+TGG 0.625316 1.1:-59615264 MS.gene005092:CDS
ATAATACCTTGTGGCCATTG+TGG 0.625787 1.1:+59616577 None:intergenic
CCATCATTATATCCTCCACC+AGG 0.627153 1.1:+59615249 None:intergenic
GTTGCAATATATGAGAGAGT+GGG 0.627285 1.1:-59614689 MS.gene005092:CDS
GGCCATTGTGGAAGAGGTGA+AGG 0.627997 1.1:+59616589 None:intergenic
GCTGCCGAGTATCTTGGTGA+TGG 0.635810 1.1:-59614733 MS.gene005092:CDS
GAAGGGAAACATAGAGAGTG+CGG 0.636222 1.1:-59615175 MS.gene005092:CDS
TGAAGGTAAGTCCCTGCATG+AGG 0.636865 1.1:+59614844 None:intergenic
ATAGTTTATTCATCAAGACA+TGG 0.637290 1.1:-59614880 MS.gene005092:CDS
ACAAGAACGTGTCCTCGCAA+CGG 0.637737 1.1:+59615882 None:intergenic
TCTGTCGGAACATTCTTCTG+TGG 0.649136 1.1:-59615519 MS.gene005092:CDS
AACAAGATCGGTGAACATGT+CGG 0.653405 1.1:-59615033 MS.gene005092:CDS
CACTTGTTCAGAATCAAAGT+AGG 0.653816 1.1:+59615494 None:intergenic
AGAACGTGAATCATATACAA+TGG 0.654517 1.1:+59614660 None:intergenic
GCTAGCATACCTCTATCGCA+AGG 0.655324 1.1:+59615552 None:intergenic
ATGCTAGCTATCCTCATGCA+GGG 0.655682 1.1:-59614855 MS.gene005092:CDS
CAGAGCTTTCTGGTGAGGAG+GGG 0.657357 1.1:-59614561 MS.gene005092:CDS
GCAACGGCTGATCATTGGAG+TGG 0.664542 1.1:+59615898 None:intergenic
GAGTCATTACAGAACCATGT+TGG 0.666649 1.1:-59614711 MS.gene005092:CDS
TTGCAATATATGAGAGAGTG+GGG 0.676061 1.1:-59614688 MS.gene005092:CDS
GATAGAGGTATGCTAGCTAG+AGG 0.685865 1.1:-59615546 MS.gene005092:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAATAATAGAAAA+AGG + chr1.1:59614634-59614653 None:intergenic 10.0%
!! AGAAAAAAATAATAGAAAAA+GGG + chr1.1:59614633-59614652 None:intergenic 10.0%
!! AAAAATAATAGAAAAAGGGA+AGG + chr1.1:59614629-59614648 None:intergenic 20.0%
!!! AATACTATTTGATTTCGTTT+TGG - chr1.1:59614997-59615016 MS.gene005092:CDS 20.0%
!!! ATATTTGTGCTGTTTTTTAT+TGG - chr1.1:59614787-59614806 MS.gene005092:CDS 20.0%
!!! TGCTAAAAGTAATTTTATTC+TGG - chr1.1:59616392-59616411 MS.gene005092:intron 20.0%
! ACAGAAAACCTAACAAATAT+TGG + chr1.1:59616567-59616586 None:intergenic 25.0%
! ATAGTTTATTCATCAAGACA+TGG - chr1.1:59616294-59616313 MS.gene005092:intron 25.0%
! CACTTAATTACTCGTTAATA+TGG - chr1.1:59615383-59615402 MS.gene005092:CDS 25.0%
! CATATTAACGAGTAATTAAG+TGG + chr1.1:59615385-59615404 None:intergenic 25.0%
! CTGTTGGAAATAATTCAAAA+AGG + chr1.1:59616596-59616615 None:intergenic 25.0%
! TAAACAAGTTTGAGAAAGTT+TGG - chr1.1:59615161-59615180 MS.gene005092:CDS 25.0%
! TAGTTTATTCATCAAGACAT+GGG - chr1.1:59616295-59616314 MS.gene005092:intron 25.0%
! TGTCTTGATGAATAAACTAT+TGG + chr1.1:59616294-59616313 None:intergenic 25.0%
!! ATGATGAATGTGTTTACTTT+TGG - chr1.1:59615419-59615438 MS.gene005092:CDS 25.0%
!! GGTATTACTGTGATTAATTT+TGG - chr1.1:59614808-59614827 MS.gene005092:CDS 25.0%
!! TTACTGTGTTCTTTCTATTT+TGG - chr1.1:59614717-59614736 MS.gene005092:CDS 25.0%
!! TTTCACATTTTATAGACCTT+TGG - chr1.1:59615216-59615235 MS.gene005092:CDS 25.0%
!!! AATATTTGTTAGGTTTTCTG+TGG - chr1.1:59616566-59616585 MS.gene005092:intron 25.0%
!!! ATTCGATTTGGAGTTTATTA+AGG - chr1.1:59616260-59616279 MS.gene005092:intron 25.0%
!!! GTAGTATTTTTTGCAGATAT+TGG - chr1.1:59614836-59614855 MS.gene005092:CDS 25.0%
!!! TTTGAGTTGATGATTAAAAC+AGG + chr1.1:59614680-59614699 None:intergenic 25.0%
!!! TTTGATTTCGTTTTGGTTAT+TGG - chr1.1:59615004-59615023 MS.gene005092:CDS 25.0%
AACATTGAGATGAACAAGAT+CGG - chr1.1:59616129-59616148 MS.gene005092:intron 30.0%
ACATGCTTCCAATATTTGTT+AGG - chr1.1:59616556-59616575 MS.gene005092:intron 30.0%
AGAAAAATTCTTTCCAGGTT+TGG - chr1.1:59615590-59615609 MS.gene005092:CDS 30.0%
AGAACGTGAATCATATACAA+TGG + chr1.1:59616517-59616536 None:intergenic 30.0%
ATGCACAAATTCTAATGGAA+AGG - chr1.1:59615186-59615205 MS.gene005092:CDS 30.0%
CTTTACTGATATTGCAATGT+GGG - chr1.1:59616059-59616078 MS.gene005092:CDS 30.0%
GCGAGAAATAATCTTAAGAA+GGG - chr1.1:59615982-59616001 MS.gene005092:CDS 30.0%
GGTAAAGCTATAGATTATCA+CGG - chr1.1:59615892-59615911 MS.gene005092:CDS 30.0%
GTCAAAGAAAAATTCTTTCC+AGG - chr1.1:59615585-59615604 MS.gene005092:CDS 30.0%
GTTCATCAATGACACTTTAA+GGG + chr1.1:59616112-59616131 None:intergenic 30.0%
TGCGAGAAATAATCTTAAGA+AGG - chr1.1:59615981-59616000 MS.gene005092:CDS 30.0%
TGTTCATCAATGACACTTTA+AGG + chr1.1:59616113-59616132 None:intergenic 30.0%
! ATTATTTCTCGCATCTTCAT+CGG + chr1.1:59615974-59615993 None:intergenic 30.0%
!! TGTAACTTGTATTTTCCCAA+GGG + chr1.1:59615137-59615156 None:intergenic 30.0%
!! TTGTAACTTGTATTTTCCCA+AGG + chr1.1:59615138-59615157 None:intergenic 30.0%
CACTTGTTCAGAATCAAAGT+AGG + chr1.1:59615683-59615702 None:intergenic 35.0%
CATCGAACTTCTTCAACTTT+CGG + chr1.1:59615508-59615527 None:intergenic 35.0%
CCACATTGCAATATCAGTAA+AGG + chr1.1:59616061-59616080 None:intergenic 35.0%
CCTTTACTGATATTGCAATG+TGG - chr1.1:59616058-59616077 MS.gene005092:CDS 35.0%
CGTGAATCATATACAATGGT+AGG + chr1.1:59616513-59616532 None:intergenic 35.0%
CTACTTTGATTCTGAACAAG+TGG - chr1.1:59615681-59615700 MS.gene005092:CDS 35.0%
CTCACAAACTTCTGTTAGAT+CGG + chr1.1:59615539-59615558 None:intergenic 35.0%
CTCATATATTGCAACCAACA+TGG + chr1.1:59616480-59616499 None:intergenic 35.0%
GTTCATGTAAAACCAGCATT+AGG - chr1.1:59616030-59616049 MS.gene005092:CDS 35.0%
GTTGCAATATATGAGAGAGT+GGG - chr1.1:59616485-59616504 MS.gene005092:intron 35.0%
TCAGGATGAAAATATACCGT+TGG + chr1.1:59615796-59615815 None:intergenic 35.0%
TGAGAAATACATGCCATCAT+CGG - chr1.1:59615816-59615835 MS.gene005092:CDS 35.0%
TGGAGATGCACAAATTCTAA+TGG - chr1.1:59615181-59615200 MS.gene005092:CDS 35.0%
TTACTCGTTAATATGGTGCA+TGG - chr1.1:59615390-59615409 MS.gene005092:CDS 35.0%
TTATTTCCAACAGAGCTTTC+TGG - chr1.1:59616603-59616622 MS.gene005092:CDS 35.0%
TTGCAATATATGAGAGAGTG+GGG - chr1.1:59616486-59616505 MS.gene005092:intron 35.0%
! ATGGGTTAATGCATTCGATT+TGG - chr1.1:59616248-59616267 MS.gene005092:intron 35.0%
! TGGAGCAATTTTGTATACTG+CGG - chr1.1:59615858-59615877 MS.gene005092:CDS 35.0%
!! AATTCTAATGGAAAGGCACT+AGG - chr1.1:59615193-59615212 MS.gene005092:CDS 35.0%
!! AGGTTGATGATAATACCTTG+TGG + chr1.1:59614609-59614628 None:intergenic 35.0%
!! GATATAATGATGGTGCGTTT+TGG - chr1.1:59615935-59615954 MS.gene005092:CDS 35.0%
!!! TGGTTTTGAGTGTTCTTGTT+GGG - chr1.1:59614515-59614534 MS.gene005092:CDS 35.0%
!!! TTGGTTTTGAGTGTTCTTGT+TGG - chr1.1:59614514-59614533 MS.gene005092:CDS 35.0%
AAAAACAGACCAAAGCTCTC+CGG + chr1.1:59616205-59616224 None:intergenic 40.0%
AACAAGATCGGTGAACATGT+CGG - chr1.1:59616141-59616160 MS.gene005092:intron 40.0%
AACTTTCGGTTCATCTGGAT+TGG + chr1.1:59615494-59615513 None:intergenic 40.0%
AAGAGGTGAAGGAAGAGAAA+AGG + chr1.1:59614577-59614596 None:intergenic 40.0%
AAGGTTGTGTATTCCAAACC+TGG + chr1.1:59615606-59615625 None:intergenic 40.0%
AATACACAACCTTGCGATAG+AGG - chr1.1:59615613-59615632 MS.gene005092:CDS 40.0%
AGAGGTGAAGGAAGAGAAAA+GGG + chr1.1:59614576-59614595 None:intergenic 40.0%
ATAATACCTTGTGGCCATTG+TGG + chr1.1:59614600-59614619 None:intergenic 40.0%
ATGCTCTCATTGAGCATTAC+GGG - chr1.1:59615770-59615789 MS.gene005092:CDS 40.0%
CATGCTCTCATTGAGCATTA+CGG - chr1.1:59615769-59615788 MS.gene005092:CDS 40.0%
CATGTAAAACCAGCATTAGG+AGG - chr1.1:59616033-59616052 MS.gene005092:CDS 40.0%
GAGTCATTACAGAACCATGT+TGG - chr1.1:59616463-59616482 MS.gene005092:intron 40.0%
GATGGCATGTATTTCTCATC+AGG + chr1.1:59615814-59615833 None:intergenic 40.0%
GCATGAATCTGGTTGAGATT+CGG + chr1.1:59615754-59615773 None:intergenic 40.0%
GGAACAATCAGCTTGAGATT+TGG + chr1.1:59615335-59615354 None:intergenic 40.0%
GGATCAGAGTCAAAGAATTC+TGG + chr1.1:59614549-59614568 None:intergenic 40.0%
GGATCATCCAAACTTGGAAT+AGG - chr1.1:59616354-59616373 MS.gene005092:intron 40.0%
GGTTGCAATATATGAGAGAG+TGG - chr1.1:59616484-59616503 MS.gene005092:intron 40.0%
TATACTGCGGGTAATGCAAA+GGG - chr1.1:59615871-59615890 MS.gene005092:CDS 40.0%
TATCACGGCACAAATTTACC+TGG - chr1.1:59615907-59615926 MS.gene005092:CDS 40.0%
TCTTCAACTTTCGGTTCATC+TGG + chr1.1:59615499-59615518 None:intergenic 40.0%
! AATCCATCTGGAATCTCCAA+AGG + chr1.1:59615235-59615254 None:intergenic 40.0%
! AATGACACTTTAAGGGTTGC+AGG + chr1.1:59616105-59616124 None:intergenic 40.0%
! GGAGCAATTTTGTATACTGC+GGG - chr1.1:59615859-59615878 MS.gene005092:CDS 40.0%
! TTATAACCCTTTGGAGGGTT+AGG + chr1.1:59615448-59615467 None:intergenic 40.0%
!! AAGTGGCTTTTTAAGAGCCA+AGG + chr1.1:59615368-59615387 None:intergenic 40.0%
!!! GTGTCGTGGTTTTTCAAGAA+TGG - chr1.1:59615838-59615857 MS.gene005092:CDS 40.0%
!!! GTTTTTTTCTCTGAGCACAG+TGG - chr1.1:59616219-59616238 MS.gene005092:intron 40.0%
!!! TGGGTTTTTTGCCCATTCAA+TGG - chr1.1:59616078-59616097 MS.gene005092:intron 40.0%
AAAAACCACGACACCGATGA+TGG + chr1.1:59615832-59615851 None:intergenic 45.0%
AAGAGCCAAGGATTCTGACT+CGG + chr1.1:59615356-59615375 None:intergenic 45.0%
AAGGAGAAGGACAATTGGCT+AGG - chr1.1:59616648-59616667 MS.gene005092:CDS 45.0%
AGCCAATTGTCCTTCTCCTT+TGG + chr1.1:59616648-59616667 None:intergenic 45.0%
AGCTTGTGAGTGATCTACTC+AGG - chr1.1:59615085-59615104 MS.gene005092:CDS 45.0%
ATGCTAGCTATCCTCATGCA+GGG - chr1.1:59616319-59616338 MS.gene005092:intron 45.0%
ATTGTTGCTGCCGAGTATCT+TGG - chr1.1:59616435-59616454 MS.gene005092:intron 45.0%
CAAGTTTGGATGATCCCTGA+AGG + chr1.1:59616350-59616369 None:intergenic 45.0%
CCAAAGGGTTATAAAGCCGT+CGG - chr1.1:59615454-59615473 MS.gene005092:CDS 45.0%
CCAAGACAGGAAAATCCATC+TGG + chr1.1:59615247-59615266 None:intergenic 45.0%
CCATCATTATATCCTCCACC+AGG + chr1.1:59615928-59615947 None:intergenic 45.0%
CCTGGTGGAGGATATAATGA+TGG - chr1.1:59615925-59615944 MS.gene005092:CDS 45.0%
CTTCAGGGATCATCCAAACT+TGG - chr1.1:59616348-59616367 MS.gene005092:intron 45.0%
GAAGGAAGAGAAAAGGGAAG+TGG + chr1.1:59614570-59614589 None:intergenic 45.0%
GAAGGGAAACATAGAGAGTG+CGG - chr1.1:59615999-59616018 MS.gene005092:CDS 45.0%
GACTCCATCACCAAGATACT+CGG + chr1.1:59616448-59616467 None:intergenic 45.0%
GCGAACTCCTATTCCAAGTT+TGG + chr1.1:59616364-59616383 None:intergenic 45.0%
GTATACTGCGGGTAATGCAA+AGG - chr1.1:59615870-59615889 MS.gene005092:CDS 45.0%
GTCCAAAGGAGAAGGACAAT+TGG - chr1.1:59616643-59616662 MS.gene005092:CDS 45.0%
TCTGTCGGAACATTCTTCTG+TGG - chr1.1:59615655-59615674 MS.gene005092:CDS 45.0%
TGAGCACAGTGGAGGTAAAT+GGG - chr1.1:59616230-59616249 MS.gene005092:intron 45.0%
TTCCTTCACCTCTTCCACAA+TGG - chr1.1:59614583-59614602 MS.gene005092:CDS 45.0%
TTGTGAGTGATCTACTCAGG+TGG - chr1.1:59615088-59615107 MS.gene005092:CDS 45.0%
TTGTTCCGAGTCAGAATCCT+TGG - chr1.1:59615348-59615367 MS.gene005092:CDS 45.0%
TTTCTCGCATCTTCATCGGT+AGG + chr1.1:59615970-59615989 None:intergenic 45.0%
! ACGGCTTTATAACCCTTTGG+AGG + chr1.1:59615454-59615473 None:intergenic 45.0%
! AGACCTTTGGAGATTCCAGA+TGG - chr1.1:59615229-59615248 MS.gene005092:CDS 45.0%
! CGGCTTTATAACCCTTTGGA+GGG + chr1.1:59615453-59615472 None:intergenic 45.0%
! CTAGCTAGAGGTGTATCTGT+CGG - chr1.1:59615640-59615659 MS.gene005092:CDS 45.0%
! GATAGAGGTATGCTAGCTAG+AGG - chr1.1:59615628-59615647 MS.gene005092:CDS 45.0%
! GCTCAATGAGAGCATGAATC+TGG + chr1.1:59615765-59615784 None:intergenic 45.0%
! TTTCGGTTCATCTGGATTGG+TGG + chr1.1:59615491-59615510 None:intergenic 45.0%
! TTTTTCTCTGAGCACAGTGG+AGG - chr1.1:59616222-59616241 MS.gene005092:intron 45.0%
!! CCAGATGGATTTTCCTGTCT+TGG - chr1.1:59615244-59615263 MS.gene005092:CDS 45.0%
ACAAGAACGTGTCCTCGCAA+CGG + chr1.1:59615295-59615314 None:intergenic 50.0%
AGGGTTGCAGGTCCATTGAA+TGG + chr1.1:59616093-59616112 None:intergenic 50.0%
CACGGCACAAATTTACCTGG+TGG - chr1.1:59615910-59615929 MS.gene005092:CDS 50.0%
CATGCAGGGACTTACCTTCA+GGG - chr1.1:59616333-59616352 MS.gene005092:intron 50.0%
CATGCTAGCTATCCTCATGC+AGG - chr1.1:59616318-59616337 MS.gene005092:intron 50.0%
CATTGAGCATTACGGGCCAA+CGG - chr1.1:59615777-59615796 MS.gene005092:CDS 50.0%
CCCAAGGGATATTCTTCCAC+CGG + chr1.1:59615122-59615141 None:intergenic 50.0%
CCGGTGGAAGAATATCCCTT+GGG - chr1.1:59615119-59615138 MS.gene005092:CDS 50.0%
CGGTGAACATGTCGGTGATT+GGG - chr1.1:59616149-59616168 MS.gene005092:intron 50.0%
CTGAGCACAGTGGAGGTAAA+TGG - chr1.1:59616229-59616248 MS.gene005092:intron 50.0%
GCTAGCATACCTCTATCGCA+AGG + chr1.1:59615625-59615644 None:intergenic 50.0%
GGCACAAATTTACCTGGTGG+AGG - chr1.1:59615913-59615932 MS.gene005092:CDS 50.0%
GGGTTGCAGGTCCATTGAAT+GGG + chr1.1:59616092-59616111 None:intergenic 50.0%
GGTGGTAACTACTATGCCGA+CGG + chr1.1:59615473-59615492 None:intergenic 50.0%
GTAAAGGCTCCTCCTAATGC+TGG + chr1.1:59616045-59616064 None:intergenic 50.0%
GTGGCAGTAGTAACCAAGAC+AGG + chr1.1:59615260-59615279 None:intergenic 50.0%
TCATGCAGGGACTTACCTTC+AGG - chr1.1:59616332-59616351 MS.gene005092:intron 50.0%
TCCTCACCAGAAAGCTCTGT+TGG + chr1.1:59616612-59616631 None:intergenic 50.0%
TCCTTCTCCTTTGGACCAGT+TGG + chr1.1:59616639-59616658 None:intergenic 50.0%
TCGGTGAACATGTCGGTGAT+TGG - chr1.1:59616148-59616167 MS.gene005092:intron 50.0%
TGAAGGTAAGTCCCTGCATG+AGG + chr1.1:59616333-59616352 None:intergenic 50.0%
TGAGTGATCTACTCAGGTGG+TGG - chr1.1:59615091-59615110 MS.gene005092:CDS 50.0%
TGGTTGCCTAACCCTCCAAA+GGG - chr1.1:59615439-59615458 MS.gene005092:CDS 50.0%
TTGGTTGCCTAACCCTCCAA+AGG - chr1.1:59615438-59615457 MS.gene005092:CDS 50.0%
! AACAGAGCTTTCTGGTGAGG+AGG - chr1.1:59616611-59616630 MS.gene005092:CDS 50.0%
! ACAGAGCTTTCTGGTGAGGA+GGG - chr1.1:59616612-59616631 MS.gene005092:CDS 50.0%
! CCGACGGCTTTATAACCCTT+TGG + chr1.1:59615457-59615476 None:intergenic 50.0%
! TCCAACAGAGCTTTCTGGTG+AGG - chr1.1:59616608-59616627 MS.gene005092:CDS 50.0%
!! TACTCAGGTGGTGGTTTTGC+CGG - chr1.1:59615100-59615119 MS.gene005092:CDS 50.0%
AGGACACGTTCTTGTCGCTC+GGG - chr1.1:59615300-59615319 MS.gene005092:CDS 55.0%
CCTCTTCCACAATGGCCACA+AGG - chr1.1:59614591-59614610 MS.gene005092:CDS 55.0%
CCTTGTGGCCATTGTGGAAG+AGG + chr1.1:59614594-59614613 None:intergenic 55.0%
CTTCGCGTGAGCAACTTCAC+CGG - chr1.1:59616183-59616202 MS.gene005092:intron 55.0%
GAGGACACGTTCTTGTCGCT+CGG - chr1.1:59615299-59615318 MS.gene005092:CDS 55.0%
GCAACGGCTGATCATTGGAG+TGG + chr1.1:59615279-59615298 None:intergenic 55.0%
GCAACTTCACCGGAGAGCTT+TGG - chr1.1:59616193-59616212 MS.gene005092:intron 55.0%
GCCAACTGGTCCAAAGGAGA+AGG - chr1.1:59616635-59616654 MS.gene005092:CDS 55.0%
GCCGGTGGAAGAATATCCCT+TGG - chr1.1:59615118-59615137 MS.gene005092:CDS 55.0%
GCTGCCGAGTATCTTGGTGA+TGG - chr1.1:59616441-59616460 MS.gene005092:intron 55.0%
GGCCATTGTGGAAGAGGTGA+AGG + chr1.1:59614588-59614607 None:intergenic 55.0%
GGTGAAGTTGCTCACGCGAA+GGG + chr1.1:59616184-59616203 None:intergenic 55.0%
TCCAATGATCAGCCGTTGCG+AGG - chr1.1:59615280-59615299 MS.gene005092:CDS 55.0%
TCCTCGCAACGGCTGATCAT+TGG + chr1.1:59615284-59615303 None:intergenic 55.0%
! CAGAGCTTTCTGGTGAGGAG+GGG - chr1.1:59616613-59616632 MS.gene005092:CDS 55.0%
!! ACATGCCATCATCGGTGTCG+TGG - chr1.1:59615824-59615843 MS.gene005092:CDS 55.0%
CGGTGAAGTTGCTCACGCGA+AGG + chr1.1:59616185-59616204 None:intergenic 60.0%
!! TCAGGTGGTGGTTTTGCCGG+TGG - chr1.1:59615103-59615122 MS.gene005092:CDS 60.0%
GGAGGGGCCAACTGGTCCAA+AGG - chr1.1:59616629-59616648 MS.gene005092:CDS 65.0%
TCTGGTGAGGAGGGGCCAAC+TGG - chr1.1:59616621-59616640 MS.gene005092:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 59614510 59616686 59614510 ID=MS.gene005092
chr1.1 mRNA 59614510 59616686 59614510 ID=MS.gene005092.t1;Parent=MS.gene005092
chr1.1 exon 59616584 59616686 59616584 ID=MS.gene005092.t1.exon1;Parent=MS.gene005092.t1
chr1.1 CDS 59616584 59616686 59616584 ID=cds.MS.gene005092.t1;Parent=MS.gene005092.t1
chr1.1 exon 59614510 59616089 59614510 ID=MS.gene005092.t1.exon2;Parent=MS.gene005092.t1
chr1.1 CDS 59614510 59616089 59614510 ID=cds.MS.gene005092.t1;Parent=MS.gene005092.t1
Gene Sequence

>MS.gene005092

ATGTTTGGTTTTGAGTGTTCTTGTTGGGATAGTTTGCCAGAATTCTTTGACTCTGATCCACTTCCCTTTTCTCTTCCTTCACCTCTTCCACAATGGCCACAAGGTATTATCATCAACCTTCCCTTTTTCTATTATTTTTTTCTTCTTTCTAATTAAAGCAACATATTCCTGTTTTAATCATCAACTCAAACTAGACAGACACTTTTATTACTGTGTTCTTTCTATTTTGGACAGATTATTCAATCATAATTTGTTTTTGTTTTTTTTTTTTTTTTTTATATTTGTGCTGTTTTTTATTGGTATTACTGTGATTAATTTTGGAAATTGTAGTATTTTTTGCAGATATTGGTTTTACTTAATTTTCAAGCTTACTTCTTGATTTTGTTTCATATTGATGCATTAAATAAGTATCTTTATTGCATATTTTGCTATGTCAATGTTTTACAAAGTTCTCGCTACATATATCAAAATTGAATTTTTTACTATGAATACTATTTGATTTCGTTTTGGTTATTGGCTATGTATAATGTCGAATGTTTGTGACTTAAATTATCTTATTTATAAACTAAGTTCTAAGCTTGTGAGTGATCTACTCAGGTGGTGGTTTTGCCGGTGGAAGAATATCCCTTGGGAAAATACAAGTTACAAAAGTAAACAAGTTTGAGAAAGTTTGGAGATGCACAAATTCTAATGGAAAGGCACTAGGTTTCACATTTTATAGACCTTTGGAGATTCCAGATGGATTTTCCTGTCTTGGTTACTACTGCCACTCCAATGATCAGCCGTTGCGAGGACACGTTCTTGTCGCTCGGGAGTTTACTTCCAAATCTCAAGCTGATTGTTCCGAGTCAGAATCCTTGGCTCTTAAAAAGCCACTTAATTACTCGTTAATATGGTGCATGGACTCACATGATGAATGTGTTTACTTTTGGTTGCCTAACCCTCCAAAGGGTTATAAAGCCGTCGGCATAGTAGTTACCACCAATCCAGATGAACCGAAAGTTGAAGAAGTTCGATGCGTGCGAACCGATCTAACAGAAGTTTGTGAGACATCTGATCTCTTACTAACAATAAAGTCAAAGAAAAATTCTTTCCAGGTTTGGAATACACAACCTTGCGATAGAGGTATGCTAGCTAGAGGTGTATCTGTCGGAACATTCTTCTGTGGCACCTACTTTGATTCTGAACAAGTGGTTGATGTTGTGTGTTTGAAGAATCTTGATTCTTCGTTGCACGCAATGCCGAATCTCAACCAGATTCATGCTCTCATTGAGCATTACGGGCCAACGGTATATTTTCATCCTGATGAGAAATACATGCCATCATCGGTGTCGTGGTTTTTCAAGAATGGAGCAATTTTGTATACTGCGGGTAATGCAAAGGGTAAAGCTATAGATTATCACGGCACAAATTTACCTGGTGGAGGATATAATGATGGTGCGTTTTGGATTGATTTGCCTACCGATGAAGATGCGAGAAATAATCTTAAGAAGGGAAACATAGAGAGTGCGGAACTCTATGTTCATGTAAAACCAGCATTAGGAGGAGCCTTTACTGATATTGCAATGTGGGTTTTTTGCCCATTCAATGGACCTGCAACCCTTAAAGTGTCATTGATGAACATTGAGATGAACAAGATCGGTGAACATGTCGGTGATTGGGAGCACTTCACCCTTCGCGTGAGCAACTTCACCGGAGAGCTTTGGTCTGTTTTTTTCTCTGAGCACAGTGGAGGTAAATGGGTTAATGCATTCGATTTGGAGTTTATTAAGGAGAATAAACCAATAGTTTATTCATCAAGACATGGGCATGCTAGCTATCCTCATGCAGGGACTTACCTTCAGGGATCATCCAAACTTGGAATAGGAGTTCGCAACGATGCTGCTAAAAGTAATTTTATTCTGGATTCGAGCTTTAGATACAAGATTGTTGCTGCCGAGTATCTTGGTGATGGAGTCATTACAGAACCATGTTGGTTGCAATATATGAGAGAGTGGGGTCCTACCATTGTATATGATTCACGTTCTGAAATAGAGAAGATAATAGACATGCTTCCAATATTTGTTAGGTTTTCTGTGGAGAACCTTTTTGAATTATTTCCAACAGAGCTTTCTGGTGAGGAGGGGCCAACTGGTCCAAAGGAGAAGGACAATTGGCTAGGTGATGAATATTGCTAG

Protein sequence

>MS.gene005092.t1

MFGFECSCWDSLPEFFDSDPLPFSLPSPLPQWPQGGGFAGGRISLGKIQVTKVNKFEKVWRCTNSNGKALGFTFYRPLEIPDGFSCLGYYCHSNDQPLRGHVLVAREFTSKSQADCSESESLALKKPLNYSLIWCMDSHDECVYFWLPNPPKGYKAVGIVVTTNPDEPKVEEVRCVRTDLTEVCETSDLLLTIKSKKNSFQVWNTQPCDRGMLARGVSVGTFFCGTYFDSEQVVDVVCLKNLDSSLHAMPNLNQIHALIEHYGPTVYFHPDEKYMPSSVSWFFKNGAILYTAGNAKGKAIDYHGTNLPGGGYNDGAFWIDLPTDEDARNNLKKGNIESAELYVHVKPALGGAFTDIAMWVFCPFNGPATLKVSLMNIEMNKIGEHVGDWEHFTLRVSNFTGELWSVFFSEHSGGKWVNAFDLEFIKENKPIVYSSRHGHASYPHAGTYLQGSSKLGIGVRNDAAKSNFILDSSFRYKIVAAEYLGDGVITEPCWLQYMREWGPTIVYDSRSEIEKIIDMLPIFVRFSVENLFELFPTELSGEEGPTGPKEKDNWLGDEYC