Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60886.t1 | RHN74337.1 | 92 | 587 | 44 | 2 | 6 | 589 | 565 | 1151 | 0.00E+00 | 1128.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60886.t1 | Q06466 | 25.9 | 301 | 157 | 15 | 280 | 533 | 77 | 358 | 1.1e-06 | 56.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60886.t1 | A0A396JGX9 | 92.0 | 587 | 44 | 2 | 6 | 589 | 565 | 1151 | 0.0e+00 | 1128.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene60886 | MS.gene042258 | PPI |
MS.gene60883 | MS.gene60886 | PPI |
MS.gene60886 | MS.gene042257 | PPI |
MS.gene60886 | MS.gene043859 | PPI |
MS.gene60886 | MS.gene036431 | PPI |
MS.gene60886 | MS.gene000193 | PPI |
MS.gene60886 | MS.gene036433 | PPI |
MS.gene60886 | MS.gene52616 | PPI |
MS.gene60886 | MS.gene043858 | PPI |
MS.gene061203 | MS.gene60886 | PPI |
MS.gene60886 | MS.gene061203 | PPI |
MS.gene60886 | MS.gene000191 | PPI |
MS.gene60886 | MS.gene60881 | PPI |
MS.gene60886 | MS.gene60889 | PPI |
MS.gene60886 | MS.gene000192 | PPI |
MS.gene60886 | MS.gene005095 | PPI |
MS.gene60886 | MS.gene000190 | PPI |
MS.gene60886 | MS.gene33537 | PPI |
MS.gene60886 | MS.gene52609 | PPI |
MS.gene60886 | MS.gene043855 | PPI |
MS.gene60886 | MS.gene60883 | PPI |
MS.gene60886 | MS.gene60884 | PPI |
MS.gene043858 | MS.gene60886 | PPI |
MS.gene60886 | MS.gene60888 | PPI |
MS.gene60886 | MS.gene012606 | PPI |
MS.gene60886 | MS.gene005092 | PPI |
MS.gene60886 | MS.gene60887 | PPI |
MS.gene60886 | MS.gene43969 | PPI |
MS.gene60886 | MS.gene005097 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60886.t1 | MTR_2g062370 | 87.905 | 587 | 37 | 3 | 6 | 589 | 34 | 589 | 0.0 | 1037 |
MS.gene60886.t1 | MTR_2g062380 | 84.240 | 533 | 84 | 0 | 58 | 590 | 28 | 560 | 0.0 | 945 |
MS.gene60886.t1 | MTR_2g062410 | 76.441 | 590 | 103 | 3 | 1 | 589 | 31 | 585 | 0.0 | 916 |
MS.gene60886.t1 | MTR_2g062430 | 68.900 | 582 | 138 | 5 | 9 | 589 | 13 | 552 | 0.0 | 826 |
MS.gene60886.t1 | MTR_4g131710 | 68.971 | 593 | 148 | 4 | 1 | 590 | 27 | 586 | 0.0 | 820 |
MS.gene60886.t1 | MTR_2g067640 | 56.309 | 531 | 201 | 8 | 70 | 590 | 32 | 541 | 0.0 | 602 |
MS.gene60886.t1 | MTR_2g062340 | 51.789 | 531 | 199 | 10 | 70 | 589 | 32 | 516 | 1.25e-178 | 515 |
MS.gene60886.t1 | MTR_1g080370 | 45.911 | 538 | 261 | 9 | 70 | 590 | 35 | 559 | 1.08e-163 | 479 |
MS.gene60886.t1 | MTR_1g080410 | 45.911 | 538 | 261 | 9 | 70 | 590 | 35 | 559 | 1.08e-163 | 479 |
MS.gene60886.t1 | MTR_5g007860 | 43.510 | 547 | 270 | 9 | 70 | 589 | 71 | 605 | 2.11e-153 | 454 |
MS.gene60886.t1 | MTR_4g077620 | 44.630 | 540 | 267 | 11 | 70 | 589 | 40 | 567 | 3.19e-148 | 439 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60886.t1 | AT2G44260 | 53.480 | 589 | 258 | 7 | 3 | 589 | 8 | 582 | 0.0 | 633 |
MS.gene60886.t1 | AT2G44260 | 57.854 | 522 | 208 | 5 | 70 | 589 | 41 | 552 | 0.0 | 622 |
MS.gene60886.t1 | AT2G44230 | 53.333 | 525 | 227 | 6 | 69 | 589 | 31 | 541 | 0.0 | 567 |
MS.gene60886.t1 | AT3G01870 | 48.674 | 528 | 248 | 7 | 70 | 589 | 71 | 583 | 4.10e-176 | 511 |
MS.gene60886.t1 | AT3G01880 | 48.393 | 529 | 250 | 8 | 70 | 589 | 75 | 589 | 1.96e-172 | 502 |
MS.gene60886.t1 | AT5G18490 | 44.757 | 534 | 264 | 9 | 70 | 590 | 37 | 552 | 1.28e-158 | 466 |
MS.gene60886.t1 | AT3G04350 | 44.015 | 543 | 270 | 10 | 69 | 590 | 15 | 544 | 8.64e-154 | 453 |
MS.gene60886.t1 | AT3G04350 | 44.096 | 542 | 269 | 10 | 70 | 590 | 38 | 566 | 3.83e-153 | 452 |
MS.gene60886.t1 | AT5G43950 | 41.713 | 537 | 290 | 8 | 69 | 589 | 35 | 564 | 3.92e-144 | 429 |
MS.gene60886.t1 | AT1G04090 | 41.209 | 546 | 284 | 12 | 70 | 589 | 36 | 570 | 5.93e-141 | 421 |
Find 139 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTTCCCAGGTCCATTAAA+AGG | 0.194984 | 2.3:-32015066 | None:intergenic |
ATTGGTTTCTGCAGAGTATT+TGG | 0.229797 | 2.3:+32015425 | MS.gene60886:CDS |
CTTGTAGCAAAGGATATTTC+AGG | 0.255851 | 2.3:+32014310 | MS.gene60886:CDS |
AGGTAGCAATGTTATGGATA+TGG | 0.258056 | 2.3:+32015392 | MS.gene60886:CDS |
CTCGAAGAAGTTTGTGTAAT+AGG | 0.259429 | 2.3:-32013986 | None:intergenic |
GTGAGTCTTCTACATGGATT+TGG | 0.274745 | 2.3:+32014542 | MS.gene60886:CDS |
CATCAACATTCAGCAAAGTT+TGG | 0.275579 | 2.3:+32014161 | MS.gene60886:CDS |
TCCTCTCCCAGCACTTCTTT+TGG | 0.282938 | 2.3:-32015597 | None:intergenic |
ATTGGGAGCATGTGACATTA+AGG | 0.285039 | 2.3:+32015142 | MS.gene60886:CDS |
GTCCAAAGGAAAAGGGTAAT+TGG | 0.292083 | 2.3:+32015631 | MS.gene60886:CDS |
CATGACTGTGTTTGCGAAAC+TGG | 0.292140 | 2.3:-32014110 | None:intergenic |
AATTTGAAGTTAGGGAAAAT+AGG | 0.310027 | 2.3:+32015105 | MS.gene60886:CDS |
ATCAACATTCAGCAAAGTTT+GGG | 0.318101 | 2.3:+32014162 | MS.gene60886:CDS |
GGTACCTTCGTTGCTCAAAA+TGG | 0.332082 | 2.3:+32014637 | MS.gene60886:CDS |
GAGTTCATAAATTTGAAGTT+AGG | 0.341852 | 2.3:+32015096 | MS.gene60886:CDS |
TGAGTCTTCTACATGGATTT+GGG | 0.342802 | 2.3:+32014543 | MS.gene60886:CDS |
GCTTTAGTTCCTCTATTGAT+TGG | 0.347877 | 2.3:-32014598 | None:intergenic |
GAACCAACGGGACTGACTTA+TGG | 0.352846 | 2.3:+32014229 | MS.gene60886:CDS |
GACCTGTGGTTTATGCTTCT+CGG | 0.360096 | 2.3:+32015289 | MS.gene60886:CDS |
CTTCATCAGGATGCAAATAT+AGG | 0.366519 | 2.3:-32014771 | None:intergenic |
CATGCTGGCCTTCATCTACT+AGG | 0.369862 | 2.3:+32015333 | MS.gene60886:CDS |
CTGACACACATGACTTTGTT+GGG | 0.371564 | 2.3:-32014499 | None:intergenic |
CTCAACATAATGGTGGTTCA+TGG | 0.380091 | 2.3:+32015205 | MS.gene60886:CDS |
GTCTATTTCTCTCAACATAA+TGG | 0.382864 | 2.3:+32015195 | MS.gene60886:CDS |
TCTGACACACATGACTTTGT+TGG | 0.395634 | 2.3:-32014500 | None:intergenic |
CTAACAATGATGGTGCCTAT+TGG | 0.409794 | 2.3:+32014911 | MS.gene60886:CDS |
CAATAGGCACCATCATTGTT+AGG | 0.412763 | 2.3:-32014910 | None:intergenic |
TGATAAAGGTAGCAATGTTA+TGG | 0.414830 | 2.3:+32015386 | MS.gene60886:CDS |
AGTTCATAAATTTGAAGTTA+GGG | 0.416307 | 2.3:+32015097 | MS.gene60886:CDS |
ACTTACCTTCCTCTGTCAAT+TGG | 0.417119 | 2.3:+32014797 | MS.gene60886:CDS |
ACTTATGGATACTCCATGTT+AGG | 0.419517 | 2.3:+32014244 | MS.gene60886:CDS |
GTCTCAATTTGTGTTAGATT+AGG | 0.420473 | 2.3:-32014724 | None:intergenic |
AGCTTGAATGTGTGGTCAAT+GGG | 0.428759 | 2.3:-32013962 | None:intergenic |
GCAAGAGATGATACTGATAA+AGG | 0.429248 | 2.3:+32015372 | MS.gene60886:CDS |
GGATATGGGAAAATATGTAT+TGG | 0.435630 | 2.3:+32015407 | MS.gene60886:CDS |
TCTTTATTTGCATCATCAAC+AGG | 0.436217 | 2.3:-32014943 | None:intergenic |
ACCAACAGGTCCAAAGGAAA+AGG | 0.437204 | 2.3:+32015623 | MS.gene60886:CDS |
CCTGTTGCAATAGCACAAAA+TGG | 0.439644 | 2.3:+32014868 | MS.gene60886:CDS |
GAAGGTAAGTATTCTTCATC+AGG | 0.444599 | 2.3:-32014784 | None:intergenic |
GGGTTTACCAAAAGAAGTGC+TGG | 0.449038 | 2.3:+32015590 | MS.gene60886:CDS |
GGTAGCAATGTTATGGATAT+GGG | 0.449769 | 2.3:+32015393 | MS.gene60886:CDS |
AATGTTGAGAAGTTATTGCC+TGG | 0.454803 | 2.3:+32015534 | MS.gene60886:CDS |
GTACATGTGAAACCAATGTT+TGG | 0.455920 | 2.3:+32015006 | MS.gene60886:CDS |
AATACTAGTGAGTAATCAAC+AGG | 0.461578 | 2.3:-32014358 | None:intergenic |
CTTGTATAGTAACGCTCCAT+TGG | 0.467093 | 2.3:-32014827 | None:intergenic |
TAGGTGAACATGTTGGTGAT+TGG | 0.478019 | 2.3:+32015124 | MS.gene60886:CDS |
GCAAACACAGTCATGAATCT+AGG | 0.478598 | 2.3:+32014118 | MS.gene60886:CDS |
TGGTAGCCATCAGGTGCTAT+TGG | 0.479434 | 2.3:-32014433 | None:intergenic |
CTGGGAGAGGAAGGACCAAC+AGG | 0.482050 | 2.3:+32015609 | MS.gene60886:CDS |
GGAAGGTTTGTCTTGTGTTG+TGG | 0.484281 | 2.3:-32014476 | None:intergenic |
GTGGTTTATGCTTCTCGGCA+TGG | 0.484909 | 2.3:+32015294 | MS.gene60886:CDS |
ACTGAGGCGCCTTGATCGTC+CGG | 0.485272 | 2.3:-32014202 | None:intergenic |
TTGATGATGCAAATAAAGAA+AGG | 0.492381 | 2.3:+32014947 | MS.gene60886:CDS |
ATAGGAATGGAGAGTAAGAG+TGG | 0.495814 | 2.3:-32014753 | None:intergenic |
AACAGGTAGGTCAAGCCAAT+AGG | 0.497340 | 2.3:-32014926 | None:intergenic |
CTTTCCCAGGTCCATTAAAA+GGG | 0.501041 | 2.3:-32015065 | None:intergenic |
GTGGTCAATGGGGCGAGAGC+GGG | 0.505037 | 2.3:-32013951 | None:intergenic |
GACATTAAGGGTAAGTAACT+TGG | 0.505898 | 2.3:+32015155 | MS.gene60886:CDS |
TGGATATGTTCTTGTAGCAA+AGG | 0.506215 | 2.3:+32014300 | MS.gene60886:CDS |
TTGGCTGTAGCTTCCTAACA+TGG | 0.507947 | 2.3:-32014257 | None:intergenic |
AGGTGAACATGTTGGTGATT+GGG | 0.511142 | 2.3:+32015125 | MS.gene60886:CDS |
TTGGTAGCCAAATATACAAA+GGG | 0.511993 | 2.3:-32014414 | None:intergenic |
AGTGTTGAATTGCAACATAC+AGG | 0.515646 | 2.3:+32014085 | MS.gene60886:CDS |
GAAGGTACCAACGCGAACAC+CGG | 0.518336 | 2.3:-32014623 | None:intergenic |
GCCTCAGTGTATGAACCAAC+GGG | 0.521228 | 2.3:+32014217 | MS.gene60886:CDS |
GAAGGTGGACCGGACGATCA+AGG | 0.523730 | 2.3:+32014193 | MS.gene60886:CDS |
AAGCTTGAATGTGTGGTCAA+TGG | 0.525417 | 2.3:-32013963 | None:intergenic |
TTGGGAGCATGTGACATTAA+GGG | 0.526297 | 2.3:+32015143 | MS.gene60886:CDS |
CCTCAGGATCCTAACAATGA+TGG | 0.528215 | 2.3:+32014901 | MS.gene60886:CDS |
CCTACAGCATGGTAGCCATC+AGG | 0.530924 | 2.3:-32014442 | None:intergenic |
GTGAATGTTCCTCCAAACAT+TGG | 0.533393 | 2.3:-32015018 | None:intergenic |
CCAACAGGTCCAAAGGAAAA+GGG | 0.535094 | 2.3:+32015624 | MS.gene60886:CDS |
AAGGTACCAACGCGAACACC+GGG | 0.535734 | 2.3:-32014622 | None:intergenic |
TTCAAACATGAAATTGATGG+AGG | 0.536359 | 2.3:-32014673 | None:intergenic |
ACATGAAATTGATGGAGGGT+TGG | 0.537969 | 2.3:-32014668 | None:intergenic |
AAAGAGGTTTGTTGTTGGGT+TGG | 0.542937 | 2.3:-32014276 | None:intergenic |
GTAACTTGGATGGTCAGTTA+TGG | 0.544808 | 2.3:+32015169 | MS.gene60886:CDS |
AAATGGTACTAACCTTCCTC+AGG | 0.545862 | 2.3:+32014885 | MS.gene60886:CDS |
GGAAGGACCAACAGGTCCAA+AGG | 0.546506 | 2.3:+32015617 | MS.gene60886:CDS |
TCACTATAATCTACTACAAG+AGG | 0.551185 | 2.3:-32014043 | None:intergenic |
TCTAGACTATAGTCAATATG+TGG | 0.557808 | 2.3:-32015498 | None:intergenic |
AAAGAAGTGCTGGGAGAGGA+AGG | 0.559112 | 2.3:+32015600 | MS.gene60886:CDS |
ATGTTGAGAAGTTATTGCCT+GGG | 0.560794 | 2.3:+32015535 | MS.gene60886:CDS |
CGCCTCAGTGTATGAACCAA+CGG | 0.561230 | 2.3:+32014216 | MS.gene60886:CDS |
ATGCTGGCCTTCATCTACTA+GGG | 0.562857 | 2.3:+32015334 | MS.gene60886:CDS |
TGTGGTCAATGGGGCGAGAG+CGG | 0.565396 | 2.3:-32013952 | None:intergenic |
TGATGATGCAAATAAAGAAA+GGG | 0.567205 | 2.3:+32014948 | MS.gene60886:CDS |
AAGGAAAAGGGTAATTGGAA+TGG | 0.567477 | 2.3:+32015636 | MS.gene60886:CDS |
TAGTAGATTATAGTGAATGC+AGG | 0.567559 | 2.3:+32014050 | MS.gene60886:CDS |
AATAGAGGAACTAAAGCTCC+CGG | 0.568897 | 2.3:+32014604 | MS.gene60886:CDS |
CATTGTTAGGATCCTGAGGA+AGG | 0.572703 | 2.3:-32014897 | None:intergenic |
ACACAAACTTCTTCGAGTGA+AGG | 0.574944 | 2.3:+32013992 | MS.gene60886:CDS |
TCAAACATGAAATTGATGGA+GGG | 0.575731 | 2.3:-32014672 | None:intergenic |
CATGCATCATATCCACATGC+TGG | 0.576287 | 2.3:+32015318 | MS.gene60886:CDS |
GTTTGGGGCGCCTACGAAGG+TGG | 0.577121 | 2.3:+32014178 | MS.gene60886:CDS |
CTTGTGTTGTGGTGACAACA+AGG | 0.577689 | 2.3:-32014465 | None:intergenic |
TGACACACATGACTTTGTTG+GGG | 0.578338 | 2.3:-32014498 | None:intergenic |
GGGCGCCTACGAAGGTGGAC+CGG | 0.583899 | 2.3:+32014183 | MS.gene60886:CDS |
TATTTGCATCATCAACAGGT+AGG | 0.588221 | 2.3:-32014939 | None:intergenic |
TCAGGATGCAAATATAGGAA+TGG | 0.588386 | 2.3:-32014766 | None:intergenic |
ACCAAAAGAAGTGCTGGGAG+AGG | 0.590505 | 2.3:+32015596 | MS.gene60886:CDS |
CTGAAGTTAAAGAGCCAGCA+TGG | 0.591737 | 2.3:+32015451 | MS.gene60886:CDS |
GATGTTAGACCAATCAATAG+AGG | 0.591766 | 2.3:+32014589 | MS.gene60886:CDS |
ATCGTCCGGTCCACCTTCGT+AGG | 0.592536 | 2.3:-32014188 | None:intergenic |
TATTTCTCTCAACATAATGG+TGG | 0.595363 | 2.3:+32015198 | MS.gene60886:CDS |
AAAGTTTGGGGCGCCTACGA+AGG | 0.597769 | 2.3:+32014175 | MS.gene60886:CDS |
GGGAAAATAGGTGAACATGT+TGG | 0.598707 | 2.3:+32015117 | MS.gene60886:CDS |
GGAGCGTTACTATACAAGAA+AGG | 0.600026 | 2.3:+32014832 | MS.gene60886:CDS |
ATTGGTAGCCAAATATACAA+AGG | 0.606237 | 2.3:-32014415 | None:intergenic |
GATATTTCAGGAAAGAGCAA+TGG | 0.606860 | 2.3:+32014322 | MS.gene60886:CDS |
CCTGATGGCTACCATGCTGT+AGG | 0.611461 | 2.3:+32014442 | MS.gene60886:CDS |
CATGTGAAACCAATGTTTGG+AGG | 0.614379 | 2.3:+32015009 | MS.gene60886:CDS |
AGCAATGTGAGTCTTCTACA+TGG | 0.615710 | 2.3:+32014536 | MS.gene60886:CDS |
GAGTCTTCTACATGGATTTG+GGG | 0.615942 | 2.3:+32014544 | MS.gene60886:CDS |
GGTTTACCAAAAGAAGTGCT+GGG | 0.616870 | 2.3:+32015591 | MS.gene60886:CDS |
TATCCATAAGTCAGTCCCGT+TGG | 0.618765 | 2.3:-32014232 | None:intergenic |
CCATCATTGTTAGGATCCTG+AGG | 0.623207 | 2.3:-32014901 | None:intergenic |
TGCCGAGAAGCATAAACCAC+AGG | 0.627638 | 2.3:-32015291 | None:intergenic |
AATAAAGAAAGGGTCAAGCA+AGG | 0.630463 | 2.3:+32014958 | MS.gene60886:CDS |
TCAACATTCAGCAAAGTTTG+GGG | 0.632154 | 2.3:+32014163 | MS.gene60886:CDS |
AGTAGATGAAGGCCAGCATG+TGG | 0.633143 | 2.3:-32015330 | None:intergenic |
GGTAGCCAAATATACAAAGG+GGG | 0.635504 | 2.3:-32014412 | None:intergenic |
TGGCTACCAATAGCACCTGA+TGG | 0.636406 | 2.3:+32014427 | MS.gene60886:CDS |
AAAGCTCCCGGTGTTCGCGT+TGG | 0.645605 | 2.3:+32014616 | MS.gene60886:CDS |
ATTGAACACTGCATCCGTCA+CGG | 0.650457 | 2.3:+32014378 | MS.gene60886:CDS |
TGACAACAAGGCCTACAGCA+TGG | 0.652162 | 2.3:-32014453 | None:intergenic |
TAATAGGAAGCTTGAATGTG+TGG | 0.654960 | 2.3:-32013970 | None:intergenic |
TAAACCACAGGTCTTTGTGT+CGG | 0.656244 | 2.3:-32015279 | None:intergenic |
GACACACATGACTTTGTTGG+GGG | 0.656587 | 2.3:-32014497 | None:intergenic |
TTAAGGGTAAGTAACTTGGA+TGG | 0.663636 | 2.3:+32015159 | MS.gene60886:CDS |
GGGGTCTTGATCAACCGTGA+CGG | 0.665586 | 2.3:-32014392 | None:intergenic |
TGGTAGCCAAATATACAAAG+GGG | 0.672435 | 2.3:-32014413 | None:intergenic |
ACTAGTGAGTAATCAACAGG+TGG | 0.691530 | 2.3:-32014355 | None:intergenic |
AAGACTCACATTGCTCTGTG+AGG | 0.699723 | 2.3:-32014528 | None:intergenic |
GTAGCCAAATATACAAAGGG+GGG | 0.712859 | 2.3:-32014411 | None:intergenic |
CATTCACTGATATTGCCATG+TGG | 0.716023 | 2.3:+32015034 | MS.gene60886:CDS |
GCTTGAATGTGTGGTCAATG+GGG | 0.727664 | 2.3:-32013961 | None:intergenic |
TCCCGTTGGTTCATACACTG+AGG | 0.727884 | 2.3:-32014218 | None:intergenic |
AAAAGGGTAGAAAATCCACA+TGG | 0.732112 | 2.3:-32015049 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTTGAAAAAATTATTAT+GGG | + | chr2.3:32015570-32015589 | MS.gene60886:CDS | 10.0% |
!!! | TGTTTTTGAAAAAATTATTA+TGG | + | chr2.3:32015569-32015588 | MS.gene60886:CDS | 10.0% |
!!! | AGTTCATAAATTTGAAGTTA+GGG | + | chr2.3:32015097-32015116 | MS.gene60886:CDS | 20.0% |
!!! | TTTTTCAAACATGAAATTGA+TGG | - | chr2.3:32014679-32014698 | None:intergenic | 20.0% |
!! | AATTTGAAGTTAGGGAAAAT+AGG | + | chr2.3:32015105-32015124 | MS.gene60886:CDS | 25.0% |
!! | GAGTTCATAAATTTGAAGTT+AGG | + | chr2.3:32015096-32015115 | MS.gene60886:CDS | 25.0% |
!! | TGATGATGCAAATAAAGAAA+GGG | + | chr2.3:32014948-32014967 | MS.gene60886:CDS | 25.0% |
!!! | AAAACATCTTTTAATTTCCC+AGG | - | chr2.3:32015555-32015574 | None:intergenic | 25.0% |
!!! | AGCATGGTTGAATTTTTTTA+GGG | + | chr2.3:32015467-32015486 | MS.gene60886:CDS | 25.0% |
!!! | TTGAAGACATTCTTATTTTC+TGG | - | chr2.3:32013914-32013933 | None:intergenic | 25.0% |
!!! | TTGATGATGCAAATAAAGAA+AGG | + | chr2.3:32014947-32014966 | MS.gene60886:CDS | 25.0% |
AATACTAGTGAGTAATCAAC+AGG | - | chr2.3:32014361-32014380 | None:intergenic | 30.0% | |
ACAAGAACATATCCAAAAAG+AGG | - | chr2.3:32014295-32014314 | None:intergenic | 30.0% | |
ATCAACATTCAGCAAAGTTT+GGG | + | chr2.3:32014162-32014181 | MS.gene60886:CDS | 30.0% | |
CTAAAAAAATTCAACCATGC+TGG | - | chr2.3:32015468-32015487 | None:intergenic | 30.0% | |
GGATATGGGAAAATATGTAT+TGG | + | chr2.3:32015407-32015426 | MS.gene60886:CDS | 30.0% | |
GTCTCAATTTGTGTTAGATT+AGG | - | chr2.3:32014727-32014746 | None:intergenic | 30.0% | |
TAGTAGATTATAGTGAATGC+AGG | + | chr2.3:32014050-32014069 | MS.gene60886:CDS | 30.0% | |
TATTTCTCTCAACATAATGG+TGG | + | chr2.3:32015198-32015217 | MS.gene60886:CDS | 30.0% | |
TCAAACATGAAATTGATGGA+GGG | - | chr2.3:32014675-32014694 | None:intergenic | 30.0% | |
TCACTATAATCTACTACAAG+AGG | - | chr2.3:32014046-32014065 | None:intergenic | 30.0% | |
TCTAGACTATAGTCAATATG+TGG | - | chr2.3:32015501-32015520 | None:intergenic | 30.0% | |
TGATAAAGGTAGCAATGTTA+TGG | + | chr2.3:32015386-32015405 | MS.gene60886:CDS | 30.0% | |
TTCAAACATGAAATTGATGG+AGG | - | chr2.3:32014676-32014695 | None:intergenic | 30.0% | |
! | ATTGGTAGCCAAATATACAA+AGG | - | chr2.3:32014418-32014437 | None:intergenic | 30.0% |
! | GTCTATTTCTCTCAACATAA+TGG | + | chr2.3:32015195-32015214 | MS.gene60886:CDS | 30.0% |
! | TCTTTATTTGCATCATCAAC+AGG | - | chr2.3:32014946-32014965 | None:intergenic | 30.0% |
! | TGGATTTTCTACCCTTTTAA+TGG | + | chr2.3:32015054-32015073 | MS.gene60886:CDS | 30.0% |
! | TTGGTAGCCAAATATACAAA+GGG | - | chr2.3:32014417-32014436 | None:intergenic | 30.0% |
!!! | CAGCATGGTTGAATTTTTTT+AGG | + | chr2.3:32015466-32015485 | MS.gene60886:CDS | 30.0% |
!!! | GTTGAATTTTTTTAGGGAGT+GGG | + | chr2.3:32015473-32015492 | MS.gene60886:CDS | 30.0% |
!!! | TTGAATTTTTTTAGGGAGTG+GGG | + | chr2.3:32015474-32015493 | MS.gene60886:CDS | 30.0% |
AAAAACCAATTGACAGAGGA+AGG | - | chr2.3:32014805-32014824 | None:intergenic | 35.0% | |
AAAAGGGTAGAAAATCCACA+TGG | - | chr2.3:32015052-32015071 | None:intergenic | 35.0% | |
AAGGAAAAGGGTAATTGGAA+TGG | + | chr2.3:32015636-32015655 | MS.gene60886:CDS | 35.0% | |
AATAAAGAAAGGGTCAAGCA+AGG | + | chr2.3:32014958-32014977 | MS.gene60886:CDS | 35.0% | |
AATGTTGAGAAGTTATTGCC+TGG | + | chr2.3:32015534-32015553 | MS.gene60886:CDS | 35.0% | |
ACTTATGGATACTCCATGTT+AGG | + | chr2.3:32014244-32014263 | MS.gene60886:CDS | 35.0% | |
AGGTAGCAATGTTATGGATA+TGG | + | chr2.3:32015392-32015411 | MS.gene60886:CDS | 35.0% | |
ATGTTGAGAAGTTATTGCCT+GGG | + | chr2.3:32015535-32015554 | MS.gene60886:CDS | 35.0% | |
CATCAACATTCAGCAAAGTT+TGG | + | chr2.3:32014161-32014180 | MS.gene60886:CDS | 35.0% | |
CTCGAAGAAGTTTGTGTAAT+AGG | - | chr2.3:32013989-32014008 | None:intergenic | 35.0% | |
CTTCATCAGGATGCAAATAT+AGG | - | chr2.3:32014774-32014793 | None:intergenic | 35.0% | |
CTTCATCTACTAGGGAAAAA+TGG | + | chr2.3:32015342-32015361 | MS.gene60886:CDS | 35.0% | |
CTTGTAGCAAAGGATATTTC+AGG | + | chr2.3:32014310-32014329 | MS.gene60886:CDS | 35.0% | |
GAAGGTAAGTATTCTTCATC+AGG | - | chr2.3:32014787-32014806 | None:intergenic | 35.0% | |
GACATTAAGGGTAAGTAACT+TGG | + | chr2.3:32015155-32015174 | MS.gene60886:CDS | 35.0% | |
GATATTTCAGGAAAGAGCAA+TGG | + | chr2.3:32014322-32014341 | MS.gene60886:CDS | 35.0% | |
GATGTTAGACCAATCAATAG+AGG | + | chr2.3:32014589-32014608 | MS.gene60886:CDS | 35.0% | |
GCAAGAGATGATACTGATAA+AGG | + | chr2.3:32015372-32015391 | MS.gene60886:CDS | 35.0% | |
GGTAGCAATGTTATGGATAT+GGG | + | chr2.3:32015393-32015412 | MS.gene60886:CDS | 35.0% | |
GTACATGTGAAACCAATGTT+TGG | + | chr2.3:32015006-32015025 | MS.gene60886:CDS | 35.0% | |
TAATAGGAAGCTTGAATGTG+TGG | - | chr2.3:32013973-32013992 | None:intergenic | 35.0% | |
TATTTGCATCATCAACAGGT+AGG | - | chr2.3:32014942-32014961 | None:intergenic | 35.0% | |
TCAACATTCAGCAAAGTTTG+GGG | + | chr2.3:32014163-32014182 | MS.gene60886:CDS | 35.0% | |
TCAGGATGCAAATATAGGAA+TGG | - | chr2.3:32014769-32014788 | None:intergenic | 35.0% | |
TGAGTCTTCTACATGGATTT+GGG | + | chr2.3:32014543-32014562 | MS.gene60886:CDS | 35.0% | |
TGGATATGTTCTTGTAGCAA+AGG | + | chr2.3:32014300-32014319 | MS.gene60886:CDS | 35.0% | |
TGGTAGCCAAATATACAAAG+GGG | - | chr2.3:32014416-32014435 | None:intergenic | 35.0% | |
TGTCTTCAAGAAAAAGAGAC+AGG | + | chr2.3:32013925-32013944 | MS.gene60886:CDS | 35.0% | |
TTAAGGGTAAGTAACTTGGA+TGG | + | chr2.3:32015159-32015178 | MS.gene60886:CDS | 35.0% | |
! | AGTGTTGAATTGCAACATAC+AGG | + | chr2.3:32014085-32014104 | MS.gene60886:CDS | 35.0% |
! | ATTGGTTTCTGCAGAGTATT+TGG | + | chr2.3:32015425-32015444 | MS.gene60886:CDS | 35.0% |
! | CATTTTTCCCTAGTAGATGA+AGG | - | chr2.3:32015344-32015363 | None:intergenic | 35.0% |
! | GCTTTAGTTCCTCTATTGAT+TGG | - | chr2.3:32014601-32014620 | None:intergenic | 35.0% |
! | TTCCAATTACCCTTTTCCTT+TGG | - | chr2.3:32015636-32015655 | None:intergenic | 35.0% |
!! | CCAAAAAGAGGTTTGTTGTT+GGG | - | chr2.3:32014283-32014302 | None:intergenic | 35.0% |
!! | TCCAAAAAGAGGTTTGTTGT+TGG | - | chr2.3:32014284-32014303 | None:intergenic | 35.0% |
!!! | GGTTGAATTTTTTTAGGGAG+TGG | + | chr2.3:32015472-32015491 | MS.gene60886:CDS | 35.0% |
!!! | GTCAATTGGTTTTTCTCCAA+TGG | + | chr2.3:32014811-32014830 | MS.gene60886:CDS | 35.0% |
AAATGGTACTAACCTTCCTC+AGG | + | chr2.3:32014885-32014904 | MS.gene60886:CDS | 40.0% | |
AAGACCCCCCTTTGTATATT+TGG | + | chr2.3:32014407-32014426 | MS.gene60886:CDS | 40.0% | |
AAGCTTGAATGTGTGGTCAA+TGG | - | chr2.3:32013966-32013985 | None:intergenic | 40.0% | |
AATAGAGGAACTAAAGCTCC+CGG | + | chr2.3:32014604-32014623 | MS.gene60886:CDS | 40.0% | |
ACACAAACTTCTTCGAGTGA+AGG | + | chr2.3:32013992-32014011 | MS.gene60886:CDS | 40.0% | |
ACATGAAATTGATGGAGGGT+TGG | - | chr2.3:32014671-32014690 | None:intergenic | 40.0% | |
ACTAGTGAGTAATCAACAGG+TGG | - | chr2.3:32014358-32014377 | None:intergenic | 40.0% | |
ACTTACCTTCCTCTGTCAAT+TGG | + | chr2.3:32014797-32014816 | MS.gene60886:CDS | 40.0% | |
AGCAATGTGAGTCTTCTACA+TGG | + | chr2.3:32014536-32014555 | MS.gene60886:CDS | 40.0% | |
AGCTTGAATGTGTGGTCAAT+GGG | - | chr2.3:32013965-32013984 | None:intergenic | 40.0% | |
ATAGGAATGGAGAGTAAGAG+TGG | - | chr2.3:32014756-32014775 | None:intergenic | 40.0% | |
CAATAGGCACCATCATTGTT+AGG | - | chr2.3:32014913-32014932 | None:intergenic | 40.0% | |
CATGTGAAACCAATGTTTGG+AGG | + | chr2.3:32015009-32015028 | MS.gene60886:CDS | 40.0% | |
CATTCACTGATATTGCCATG+TGG | + | chr2.3:32015034-32015053 | MS.gene60886:CDS | 40.0% | |
CCTGTTGCAATAGCACAAAA+TGG | + | chr2.3:32014868-32014887 | MS.gene60886:CDS | 40.0% | |
CTACTAGGGAAAAATGGAGT+AGG | + | chr2.3:32015348-32015367 | MS.gene60886:CDS | 40.0% | |
CTCAACATAATGGTGGTTCA+TGG | + | chr2.3:32015205-32015224 | MS.gene60886:CDS | 40.0% | |
CTGACACACATGACTTTGTT+GGG | - | chr2.3:32014502-32014521 | None:intergenic | 40.0% | |
CTTGTATAGTAACGCTCCAT+TGG | - | chr2.3:32014830-32014849 | None:intergenic | 40.0% | |
CTTTCCCAGGTCCATTAAAA+GGG | - | chr2.3:32015068-32015087 | None:intergenic | 40.0% | |
GAGTCTTCTACATGGATTTG+GGG | + | chr2.3:32014544-32014563 | MS.gene60886:CDS | 40.0% | |
GCAAACACAGTCATGAATCT+AGG | + | chr2.3:32014118-32014137 | MS.gene60886:CDS | 40.0% | |
GGAGAAAAACCAATTGACAG+AGG | - | chr2.3:32014809-32014828 | None:intergenic | 40.0% | |
GGGAAAATAGGTGAACATGT+TGG | + | chr2.3:32015117-32015136 | MS.gene60886:CDS | 40.0% | |
GGTAGCCAAATATACAAAGG+GGG | - | chr2.3:32014415-32014434 | None:intergenic | 40.0% | |
GTAACTTGGATGGTCAGTTA+TGG | + | chr2.3:32015169-32015188 | MS.gene60886:CDS | 40.0% | |
GTAGCCAAATATACAAAGGG+GGG | - | chr2.3:32014414-32014433 | None:intergenic | 40.0% | |
GTCCAAAGGAAAAGGGTAAT+TGG | + | chr2.3:32015631-32015650 | MS.gene60886:CDS | 40.0% | |
GTGAATGTTCCTCCAAACAT+TGG | - | chr2.3:32015021-32015040 | None:intergenic | 40.0% | |
GTGAGTCTTCTACATGGATT+TGG | + | chr2.3:32014542-32014561 | MS.gene60886:CDS | 40.0% | |
TAAACCACAGGTCTTTGTGT+CGG | - | chr2.3:32015282-32015301 | None:intergenic | 40.0% | |
TCTGACACACATGACTTTGT+TGG | - | chr2.3:32014503-32014522 | None:intergenic | 40.0% | |
TGACACACATGACTTTGTTG+GGG | - | chr2.3:32014501-32014520 | None:intergenic | 40.0% | |
! | ATTGGGAGCATGTGACATTA+AGG | + | chr2.3:32015142-32015161 | MS.gene60886:CDS | 40.0% |
! | CCCAACAACAAACCTCTTTT+TGG | + | chr2.3:32014280-32014299 | MS.gene60886:CDS | 40.0% |
! | CTAACAATGATGGTGCCTAT+TGG | + | chr2.3:32014911-32014930 | MS.gene60886:CDS | 40.0% |
! | GGAGCGTTACTATACAAGAA+AGG | + | chr2.3:32014832-32014851 | MS.gene60886:CDS | 40.0% |
! | TTGGGAGCATGTGACATTAA+GGG | + | chr2.3:32015143-32015162 | MS.gene60886:CDS | 40.0% |
!! | AAAGAGGTTTGTTGTTGGGT+TGG | - | chr2.3:32014279-32014298 | None:intergenic | 40.0% |
!! | AACTCTACTTTTGCTTTCCC+AGG | - | chr2.3:32015081-32015100 | None:intergenic | 40.0% |
!! | AGGTGAACATGTTGGTGATT+GGG | + | chr2.3:32015125-32015144 | MS.gene60886:CDS | 40.0% |
!! | CCATTTTGTGCTATTGCAAC+AGG | - | chr2.3:32014871-32014890 | None:intergenic | 40.0% |
!! | GGTTTACCAAAAGAAGTGCT+GGG | + | chr2.3:32015591-32015610 | MS.gene60886:CDS | 40.0% |
!! | TAGGTGAACATGTTGGTGAT+TGG | + | chr2.3:32015124-32015143 | MS.gene60886:CDS | 40.0% |
!! | TCTACCCTTTTAATGGACCT+GGG | + | chr2.3:32015061-32015080 | MS.gene60886:CDS | 40.0% |
!! | TTCTACCCTTTTAATGGACC+TGG | + | chr2.3:32015060-32015079 | MS.gene60886:CDS | 40.0% |
AACAGGTAGGTCAAGCCAAT+AGG | - | chr2.3:32014929-32014948 | None:intergenic | 45.0% | |
AAGACTCACATTGCTCTGTG+AGG | - | chr2.3:32014531-32014550 | None:intergenic | 45.0% | |
ACCAACAGGTCCAAAGGAAA+AGG | + | chr2.3:32015623-32015642 | MS.gene60886:CDS | 45.0% | |
ATTGAACACTGCATCCGTCA+CGG | + | chr2.3:32014378-32014397 | MS.gene60886:CDS | 45.0% | |
CATGACTGTGTTTGCGAAAC+TGG | - | chr2.3:32014113-32014132 | None:intergenic | 45.0% | |
CATGCATCATATCCACATGC+TGG | + | chr2.3:32015318-32015337 | MS.gene60886:CDS | 45.0% | |
CATTGTTAGGATCCTGAGGA+AGG | - | chr2.3:32014900-32014919 | None:intergenic | 45.0% | |
CCAACAGGTCCAAAGGAAAA+GGG | + | chr2.3:32015624-32015643 | MS.gene60886:CDS | 45.0% | |
CCATCATTGTTAGGATCCTG+AGG | - | chr2.3:32014904-32014923 | None:intergenic | 45.0% | |
CCTCAGGATCCTAACAATGA+TGG | + | chr2.3:32014901-32014920 | MS.gene60886:CDS | 45.0% | |
CTGAAGTTAAAGAGCCAGCA+TGG | + | chr2.3:32015451-32015470 | MS.gene60886:CDS | 45.0% | |
CTTGTGTTGTGGTGACAACA+AGG | - | chr2.3:32014468-32014487 | None:intergenic | 45.0% | |
GACACACATGACTTTGTTGG+GGG | - | chr2.3:32014500-32014519 | None:intergenic | 45.0% | |
GACCTGTGGTTTATGCTTCT+CGG | + | chr2.3:32015289-32015308 | MS.gene60886:CDS | 45.0% | |
GCTTGAATGTGTGGTCAATG+GGG | - | chr2.3:32013964-32013983 | None:intergenic | 45.0% | |
GCTTTCCCAGGTCCATTAAA+AGG | - | chr2.3:32015069-32015088 | None:intergenic | 45.0% | |
GGAAGGTTTGTCTTGTGTTG+TGG | - | chr2.3:32014479-32014498 | None:intergenic | 45.0% | |
GGTACCTTCGTTGCTCAAAA+TGG | + | chr2.3:32014637-32014656 | MS.gene60886:CDS | 45.0% | |
TATCCATAAGTCAGTCCCGT+TGG | - | chr2.3:32014235-32014254 | None:intergenic | 45.0% | |
TTGGCTGTAGCTTCCTAACA+TGG | - | chr2.3:32014260-32014279 | None:intergenic | 45.0% | |
! | CTCACCATTTTGAGCAACGA+AGG | - | chr2.3:32014644-32014663 | None:intergenic | 45.0% |
! | GGGTTTACCAAAAGAAGTGC+TGG | + | chr2.3:32015590-32015609 | MS.gene60886:CDS | 45.0% |
! | TTTTCCGACACAAAGACCTG+TGG | + | chr2.3:32015275-32015294 | MS.gene60886:CDS | 45.0% |
!! | ATGCTGGCCTTCATCTACTA+GGG | + | chr2.3:32015334-32015353 | MS.gene60886:CDS | 45.0% |
AGTAGATGAAGGCCAGCATG+TGG | - | chr2.3:32015333-32015352 | None:intergenic | 50.0% | |
CACATGACTTTGTTGGGGGA+AGG | - | chr2.3:32014496-32014515 | None:intergenic | 50.0% | |
CGCCTCAGTGTATGAACCAA+CGG | + | chr2.3:32014216-32014235 | MS.gene60886:CDS | 50.0% | |
GCCTCAGTGTATGAACCAAC+GGG | + | chr2.3:32014217-32014236 | MS.gene60886:CDS | 50.0% | |
GTGGTTTATGCTTCTCGGCA+TGG | + | chr2.3:32015294-32015313 | MS.gene60886:CDS | 50.0% | |
TGACAACAAGGCCTACAGCA+TGG | - | chr2.3:32014456-32014475 | None:intergenic | 50.0% | |
TGGCTACCAATAGCACCTGA+TGG | + | chr2.3:32014427-32014446 | MS.gene60886:CDS | 50.0% | |
! | CCCTTTTCCTTTGGACCTGT+TGG | - | chr2.3:32015627-32015646 | None:intergenic | 50.0% |
! | GAACCAACGGGACTGACTTA+TGG | + | chr2.3:32014229-32014248 | MS.gene60886:CDS | 50.0% |
! | TCCTCTCCCAGCACTTCTTT+TGG | - | chr2.3:32015600-32015619 | None:intergenic | 50.0% |
! | TGCCGAGAAGCATAAACCAC+AGG | - | chr2.3:32015294-32015313 | None:intergenic | 50.0% |
! | TGGTAGCCATCAGGTGCTAT+TGG | - | chr2.3:32014436-32014455 | None:intergenic | 50.0% |
!! | AAAGAAGTGCTGGGAGAGGA+AGG | + | chr2.3:32015600-32015619 | MS.gene60886:CDS | 50.0% |
!! | ACCAAAAGAAGTGCTGGGAG+AGG | + | chr2.3:32015596-32015615 | MS.gene60886:CDS | 50.0% |
!! | CATGCTGGCCTTCATCTACT+AGG | + | chr2.3:32015333-32015352 | MS.gene60886:CDS | 50.0% |
!! | TCCCGTTGGTTCATACACTG+AGG | - | chr2.3:32014221-32014240 | None:intergenic | 50.0% |
CCTACAGCATGGTAGCCATC+AGG | - | chr2.3:32014445-32014464 | None:intergenic | 55.0% | |
CCTGATGGCTACCATGCTGT+AGG | + | chr2.3:32014442-32014461 | MS.gene60886:CDS | 55.0% | |
GGAAGGACCAACAGGTCCAA+AGG | + | chr2.3:32015617-32015636 | MS.gene60886:CDS | 55.0% | |
GGGGTCTTGATCAACCGTGA+CGG | - | chr2.3:32014395-32014414 | None:intergenic | 55.0% | |
! | AAAGTTTGGGGCGCCTACGA+AGG | + | chr2.3:32014175-32014194 | MS.gene60886:CDS | 55.0% |
! | AAGGTACCAACGCGAACACC+GGG | - | chr2.3:32014625-32014644 | None:intergenic | 55.0% |
!! | GAAGGTACCAACGCGAACAC+CGG | - | chr2.3:32014626-32014645 | None:intergenic | 55.0% |
AAAGCTCCCGGTGTTCGCGT+TGG | + | chr2.3:32014616-32014635 | MS.gene60886:CDS | 60.0% | |
ATCGTCCGGTCCACCTTCGT+AGG | - | chr2.3:32014191-32014210 | None:intergenic | 60.0% | |
CTGGGAGAGGAAGGACCAAC+AGG | + | chr2.3:32015609-32015628 | MS.gene60886:CDS | 60.0% | |
GAAGGTGGACCGGACGATCA+AGG | + | chr2.3:32014193-32014212 | MS.gene60886:CDS | 60.0% | |
TGTGGTCAATGGGGCGAGAG+CGG | - | chr2.3:32013955-32013974 | None:intergenic | 60.0% | |
! | ACTGAGGCGCCTTGATCGTC+CGG | - | chr2.3:32014205-32014224 | None:intergenic | 60.0% |
GTGGTCAATGGGGCGAGAGC+GGG | - | chr2.3:32013954-32013973 | None:intergenic | 65.0% | |
! | GTTTGGGGCGCCTACGAAGG+TGG | + | chr2.3:32014178-32014197 | MS.gene60886:CDS | 65.0% |
GGGCGCCTACGAAGGTGGAC+CGG | + | chr2.3:32014183-32014202 | MS.gene60886:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 32013899 | 32015671 | 32013899 | ID=MS.gene60886 |
chr2.3 | mRNA | 32013899 | 32015671 | 32013899 | ID=MS.gene60886.t1;Parent=MS.gene60886 |
chr2.3 | exon | 32013899 | 32015671 | 32013899 | ID=MS.gene60886.t1.exon1;Parent=MS.gene60886.t1 |
chr2.3 | CDS | 32013899 | 32015671 | 32013899 | ID=cds.MS.gene60886.t1;Parent=MS.gene60886.t1 |
Gene Sequence |
Protein sequence |