AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60886


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60886.t1 MTR_2g062370 87.905 587 37 3 6 589 34 589 0.0 1037
MS.gene60886.t1 MTR_2g062380 84.240 533 84 0 58 590 28 560 0.0 945
MS.gene60886.t1 MTR_2g062410 76.441 590 103 3 1 589 31 585 0.0 916
MS.gene60886.t1 MTR_2g062430 68.900 582 138 5 9 589 13 552 0.0 826
MS.gene60886.t1 MTR_4g131710 68.971 593 148 4 1 590 27 586 0.0 820
MS.gene60886.t1 MTR_2g067640 56.309 531 201 8 70 590 32 541 0.0 602
MS.gene60886.t1 MTR_2g062340 51.789 531 199 10 70 589 32 516 1.25e-178 515
MS.gene60886.t1 MTR_1g080370 45.911 538 261 9 70 590 35 559 1.08e-163 479
MS.gene60886.t1 MTR_1g080410 45.911 538 261 9 70 590 35 559 1.08e-163 479
MS.gene60886.t1 MTR_5g007860 43.510 547 270 9 70 589 71 605 2.11e-153 454
MS.gene60886.t1 MTR_4g077620 44.630 540 267 11 70 589 40 567 3.19e-148 439
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60886.t1 AT2G44260 53.480 589 258 7 3 589 8 582 0.0 633
MS.gene60886.t1 AT2G44260 57.854 522 208 5 70 589 41 552 0.0 622
MS.gene60886.t1 AT2G44230 53.333 525 227 6 69 589 31 541 0.0 567
MS.gene60886.t1 AT3G01870 48.674 528 248 7 70 589 71 583 4.10e-176 511
MS.gene60886.t1 AT3G01880 48.393 529 250 8 70 589 75 589 1.96e-172 502
MS.gene60886.t1 AT5G18490 44.757 534 264 9 70 590 37 552 1.28e-158 466
MS.gene60886.t1 AT3G04350 44.015 543 270 10 69 590 15 544 8.64e-154 453
MS.gene60886.t1 AT3G04350 44.096 542 269 10 70 590 38 566 3.83e-153 452
MS.gene60886.t1 AT5G43950 41.713 537 290 8 69 589 35 564 3.92e-144 429
MS.gene60886.t1 AT1G04090 41.209 546 284 12 70 589 36 570 5.93e-141 421

Find 139 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCCAGGTCCATTAAA+AGG 0.194984 2.3:-32015066 None:intergenic
ATTGGTTTCTGCAGAGTATT+TGG 0.229797 2.3:+32015425 MS.gene60886:CDS
CTTGTAGCAAAGGATATTTC+AGG 0.255851 2.3:+32014310 MS.gene60886:CDS
AGGTAGCAATGTTATGGATA+TGG 0.258056 2.3:+32015392 MS.gene60886:CDS
CTCGAAGAAGTTTGTGTAAT+AGG 0.259429 2.3:-32013986 None:intergenic
GTGAGTCTTCTACATGGATT+TGG 0.274745 2.3:+32014542 MS.gene60886:CDS
CATCAACATTCAGCAAAGTT+TGG 0.275579 2.3:+32014161 MS.gene60886:CDS
TCCTCTCCCAGCACTTCTTT+TGG 0.282938 2.3:-32015597 None:intergenic
ATTGGGAGCATGTGACATTA+AGG 0.285039 2.3:+32015142 MS.gene60886:CDS
GTCCAAAGGAAAAGGGTAAT+TGG 0.292083 2.3:+32015631 MS.gene60886:CDS
CATGACTGTGTTTGCGAAAC+TGG 0.292140 2.3:-32014110 None:intergenic
AATTTGAAGTTAGGGAAAAT+AGG 0.310027 2.3:+32015105 MS.gene60886:CDS
ATCAACATTCAGCAAAGTTT+GGG 0.318101 2.3:+32014162 MS.gene60886:CDS
GGTACCTTCGTTGCTCAAAA+TGG 0.332082 2.3:+32014637 MS.gene60886:CDS
GAGTTCATAAATTTGAAGTT+AGG 0.341852 2.3:+32015096 MS.gene60886:CDS
TGAGTCTTCTACATGGATTT+GGG 0.342802 2.3:+32014543 MS.gene60886:CDS
GCTTTAGTTCCTCTATTGAT+TGG 0.347877 2.3:-32014598 None:intergenic
GAACCAACGGGACTGACTTA+TGG 0.352846 2.3:+32014229 MS.gene60886:CDS
GACCTGTGGTTTATGCTTCT+CGG 0.360096 2.3:+32015289 MS.gene60886:CDS
CTTCATCAGGATGCAAATAT+AGG 0.366519 2.3:-32014771 None:intergenic
CATGCTGGCCTTCATCTACT+AGG 0.369862 2.3:+32015333 MS.gene60886:CDS
CTGACACACATGACTTTGTT+GGG 0.371564 2.3:-32014499 None:intergenic
CTCAACATAATGGTGGTTCA+TGG 0.380091 2.3:+32015205 MS.gene60886:CDS
GTCTATTTCTCTCAACATAA+TGG 0.382864 2.3:+32015195 MS.gene60886:CDS
TCTGACACACATGACTTTGT+TGG 0.395634 2.3:-32014500 None:intergenic
CTAACAATGATGGTGCCTAT+TGG 0.409794 2.3:+32014911 MS.gene60886:CDS
CAATAGGCACCATCATTGTT+AGG 0.412763 2.3:-32014910 None:intergenic
TGATAAAGGTAGCAATGTTA+TGG 0.414830 2.3:+32015386 MS.gene60886:CDS
AGTTCATAAATTTGAAGTTA+GGG 0.416307 2.3:+32015097 MS.gene60886:CDS
ACTTACCTTCCTCTGTCAAT+TGG 0.417119 2.3:+32014797 MS.gene60886:CDS
ACTTATGGATACTCCATGTT+AGG 0.419517 2.3:+32014244 MS.gene60886:CDS
GTCTCAATTTGTGTTAGATT+AGG 0.420473 2.3:-32014724 None:intergenic
AGCTTGAATGTGTGGTCAAT+GGG 0.428759 2.3:-32013962 None:intergenic
GCAAGAGATGATACTGATAA+AGG 0.429248 2.3:+32015372 MS.gene60886:CDS
GGATATGGGAAAATATGTAT+TGG 0.435630 2.3:+32015407 MS.gene60886:CDS
TCTTTATTTGCATCATCAAC+AGG 0.436217 2.3:-32014943 None:intergenic
ACCAACAGGTCCAAAGGAAA+AGG 0.437204 2.3:+32015623 MS.gene60886:CDS
CCTGTTGCAATAGCACAAAA+TGG 0.439644 2.3:+32014868 MS.gene60886:CDS
GAAGGTAAGTATTCTTCATC+AGG 0.444599 2.3:-32014784 None:intergenic
GGGTTTACCAAAAGAAGTGC+TGG 0.449038 2.3:+32015590 MS.gene60886:CDS
GGTAGCAATGTTATGGATAT+GGG 0.449769 2.3:+32015393 MS.gene60886:CDS
AATGTTGAGAAGTTATTGCC+TGG 0.454803 2.3:+32015534 MS.gene60886:CDS
GTACATGTGAAACCAATGTT+TGG 0.455920 2.3:+32015006 MS.gene60886:CDS
AATACTAGTGAGTAATCAAC+AGG 0.461578 2.3:-32014358 None:intergenic
CTTGTATAGTAACGCTCCAT+TGG 0.467093 2.3:-32014827 None:intergenic
TAGGTGAACATGTTGGTGAT+TGG 0.478019 2.3:+32015124 MS.gene60886:CDS
GCAAACACAGTCATGAATCT+AGG 0.478598 2.3:+32014118 MS.gene60886:CDS
TGGTAGCCATCAGGTGCTAT+TGG 0.479434 2.3:-32014433 None:intergenic
CTGGGAGAGGAAGGACCAAC+AGG 0.482050 2.3:+32015609 MS.gene60886:CDS
GGAAGGTTTGTCTTGTGTTG+TGG 0.484281 2.3:-32014476 None:intergenic
GTGGTTTATGCTTCTCGGCA+TGG 0.484909 2.3:+32015294 MS.gene60886:CDS
ACTGAGGCGCCTTGATCGTC+CGG 0.485272 2.3:-32014202 None:intergenic
TTGATGATGCAAATAAAGAA+AGG 0.492381 2.3:+32014947 MS.gene60886:CDS
ATAGGAATGGAGAGTAAGAG+TGG 0.495814 2.3:-32014753 None:intergenic
AACAGGTAGGTCAAGCCAAT+AGG 0.497340 2.3:-32014926 None:intergenic
CTTTCCCAGGTCCATTAAAA+GGG 0.501041 2.3:-32015065 None:intergenic
GTGGTCAATGGGGCGAGAGC+GGG 0.505037 2.3:-32013951 None:intergenic
GACATTAAGGGTAAGTAACT+TGG 0.505898 2.3:+32015155 MS.gene60886:CDS
TGGATATGTTCTTGTAGCAA+AGG 0.506215 2.3:+32014300 MS.gene60886:CDS
TTGGCTGTAGCTTCCTAACA+TGG 0.507947 2.3:-32014257 None:intergenic
AGGTGAACATGTTGGTGATT+GGG 0.511142 2.3:+32015125 MS.gene60886:CDS
TTGGTAGCCAAATATACAAA+GGG 0.511993 2.3:-32014414 None:intergenic
AGTGTTGAATTGCAACATAC+AGG 0.515646 2.3:+32014085 MS.gene60886:CDS
GAAGGTACCAACGCGAACAC+CGG 0.518336 2.3:-32014623 None:intergenic
GCCTCAGTGTATGAACCAAC+GGG 0.521228 2.3:+32014217 MS.gene60886:CDS
GAAGGTGGACCGGACGATCA+AGG 0.523730 2.3:+32014193 MS.gene60886:CDS
AAGCTTGAATGTGTGGTCAA+TGG 0.525417 2.3:-32013963 None:intergenic
TTGGGAGCATGTGACATTAA+GGG 0.526297 2.3:+32015143 MS.gene60886:CDS
CCTCAGGATCCTAACAATGA+TGG 0.528215 2.3:+32014901 MS.gene60886:CDS
CCTACAGCATGGTAGCCATC+AGG 0.530924 2.3:-32014442 None:intergenic
GTGAATGTTCCTCCAAACAT+TGG 0.533393 2.3:-32015018 None:intergenic
CCAACAGGTCCAAAGGAAAA+GGG 0.535094 2.3:+32015624 MS.gene60886:CDS
AAGGTACCAACGCGAACACC+GGG 0.535734 2.3:-32014622 None:intergenic
TTCAAACATGAAATTGATGG+AGG 0.536359 2.3:-32014673 None:intergenic
ACATGAAATTGATGGAGGGT+TGG 0.537969 2.3:-32014668 None:intergenic
AAAGAGGTTTGTTGTTGGGT+TGG 0.542937 2.3:-32014276 None:intergenic
GTAACTTGGATGGTCAGTTA+TGG 0.544808 2.3:+32015169 MS.gene60886:CDS
AAATGGTACTAACCTTCCTC+AGG 0.545862 2.3:+32014885 MS.gene60886:CDS
GGAAGGACCAACAGGTCCAA+AGG 0.546506 2.3:+32015617 MS.gene60886:CDS
TCACTATAATCTACTACAAG+AGG 0.551185 2.3:-32014043 None:intergenic
TCTAGACTATAGTCAATATG+TGG 0.557808 2.3:-32015498 None:intergenic
AAAGAAGTGCTGGGAGAGGA+AGG 0.559112 2.3:+32015600 MS.gene60886:CDS
ATGTTGAGAAGTTATTGCCT+GGG 0.560794 2.3:+32015535 MS.gene60886:CDS
CGCCTCAGTGTATGAACCAA+CGG 0.561230 2.3:+32014216 MS.gene60886:CDS
ATGCTGGCCTTCATCTACTA+GGG 0.562857 2.3:+32015334 MS.gene60886:CDS
TGTGGTCAATGGGGCGAGAG+CGG 0.565396 2.3:-32013952 None:intergenic
TGATGATGCAAATAAAGAAA+GGG 0.567205 2.3:+32014948 MS.gene60886:CDS
AAGGAAAAGGGTAATTGGAA+TGG 0.567477 2.3:+32015636 MS.gene60886:CDS
TAGTAGATTATAGTGAATGC+AGG 0.567559 2.3:+32014050 MS.gene60886:CDS
AATAGAGGAACTAAAGCTCC+CGG 0.568897 2.3:+32014604 MS.gene60886:CDS
CATTGTTAGGATCCTGAGGA+AGG 0.572703 2.3:-32014897 None:intergenic
ACACAAACTTCTTCGAGTGA+AGG 0.574944 2.3:+32013992 MS.gene60886:CDS
TCAAACATGAAATTGATGGA+GGG 0.575731 2.3:-32014672 None:intergenic
CATGCATCATATCCACATGC+TGG 0.576287 2.3:+32015318 MS.gene60886:CDS
GTTTGGGGCGCCTACGAAGG+TGG 0.577121 2.3:+32014178 MS.gene60886:CDS
CTTGTGTTGTGGTGACAACA+AGG 0.577689 2.3:-32014465 None:intergenic
TGACACACATGACTTTGTTG+GGG 0.578338 2.3:-32014498 None:intergenic
GGGCGCCTACGAAGGTGGAC+CGG 0.583899 2.3:+32014183 MS.gene60886:CDS
TATTTGCATCATCAACAGGT+AGG 0.588221 2.3:-32014939 None:intergenic
TCAGGATGCAAATATAGGAA+TGG 0.588386 2.3:-32014766 None:intergenic
ACCAAAAGAAGTGCTGGGAG+AGG 0.590505 2.3:+32015596 MS.gene60886:CDS
CTGAAGTTAAAGAGCCAGCA+TGG 0.591737 2.3:+32015451 MS.gene60886:CDS
GATGTTAGACCAATCAATAG+AGG 0.591766 2.3:+32014589 MS.gene60886:CDS
ATCGTCCGGTCCACCTTCGT+AGG 0.592536 2.3:-32014188 None:intergenic
TATTTCTCTCAACATAATGG+TGG 0.595363 2.3:+32015198 MS.gene60886:CDS
AAAGTTTGGGGCGCCTACGA+AGG 0.597769 2.3:+32014175 MS.gene60886:CDS
GGGAAAATAGGTGAACATGT+TGG 0.598707 2.3:+32015117 MS.gene60886:CDS
GGAGCGTTACTATACAAGAA+AGG 0.600026 2.3:+32014832 MS.gene60886:CDS
ATTGGTAGCCAAATATACAA+AGG 0.606237 2.3:-32014415 None:intergenic
GATATTTCAGGAAAGAGCAA+TGG 0.606860 2.3:+32014322 MS.gene60886:CDS
CCTGATGGCTACCATGCTGT+AGG 0.611461 2.3:+32014442 MS.gene60886:CDS
CATGTGAAACCAATGTTTGG+AGG 0.614379 2.3:+32015009 MS.gene60886:CDS
AGCAATGTGAGTCTTCTACA+TGG 0.615710 2.3:+32014536 MS.gene60886:CDS
GAGTCTTCTACATGGATTTG+GGG 0.615942 2.3:+32014544 MS.gene60886:CDS
GGTTTACCAAAAGAAGTGCT+GGG 0.616870 2.3:+32015591 MS.gene60886:CDS
TATCCATAAGTCAGTCCCGT+TGG 0.618765 2.3:-32014232 None:intergenic
CCATCATTGTTAGGATCCTG+AGG 0.623207 2.3:-32014901 None:intergenic
TGCCGAGAAGCATAAACCAC+AGG 0.627638 2.3:-32015291 None:intergenic
AATAAAGAAAGGGTCAAGCA+AGG 0.630463 2.3:+32014958 MS.gene60886:CDS
TCAACATTCAGCAAAGTTTG+GGG 0.632154 2.3:+32014163 MS.gene60886:CDS
AGTAGATGAAGGCCAGCATG+TGG 0.633143 2.3:-32015330 None:intergenic
GGTAGCCAAATATACAAAGG+GGG 0.635504 2.3:-32014412 None:intergenic
TGGCTACCAATAGCACCTGA+TGG 0.636406 2.3:+32014427 MS.gene60886:CDS
AAAGCTCCCGGTGTTCGCGT+TGG 0.645605 2.3:+32014616 MS.gene60886:CDS
ATTGAACACTGCATCCGTCA+CGG 0.650457 2.3:+32014378 MS.gene60886:CDS
TGACAACAAGGCCTACAGCA+TGG 0.652162 2.3:-32014453 None:intergenic
TAATAGGAAGCTTGAATGTG+TGG 0.654960 2.3:-32013970 None:intergenic
TAAACCACAGGTCTTTGTGT+CGG 0.656244 2.3:-32015279 None:intergenic
GACACACATGACTTTGTTGG+GGG 0.656587 2.3:-32014497 None:intergenic
TTAAGGGTAAGTAACTTGGA+TGG 0.663636 2.3:+32015159 MS.gene60886:CDS
GGGGTCTTGATCAACCGTGA+CGG 0.665586 2.3:-32014392 None:intergenic
TGGTAGCCAAATATACAAAG+GGG 0.672435 2.3:-32014413 None:intergenic
ACTAGTGAGTAATCAACAGG+TGG 0.691530 2.3:-32014355 None:intergenic
AAGACTCACATTGCTCTGTG+AGG 0.699723 2.3:-32014528 None:intergenic
GTAGCCAAATATACAAAGGG+GGG 0.712859 2.3:-32014411 None:intergenic
CATTCACTGATATTGCCATG+TGG 0.716023 2.3:+32015034 MS.gene60886:CDS
GCTTGAATGTGTGGTCAATG+GGG 0.727664 2.3:-32013961 None:intergenic
TCCCGTTGGTTCATACACTG+AGG 0.727884 2.3:-32014218 None:intergenic
AAAAGGGTAGAAAATCCACA+TGG 0.732112 2.3:-32015049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGAAAAAATTATTAT+GGG + chr2.3:32015570-32015589 MS.gene60886:CDS 10.0%
!!! TGTTTTTGAAAAAATTATTA+TGG + chr2.3:32015569-32015588 MS.gene60886:CDS 10.0%
!!! AGTTCATAAATTTGAAGTTA+GGG + chr2.3:32015097-32015116 MS.gene60886:CDS 20.0%
!!! TTTTTCAAACATGAAATTGA+TGG - chr2.3:32014679-32014698 None:intergenic 20.0%
!! AATTTGAAGTTAGGGAAAAT+AGG + chr2.3:32015105-32015124 MS.gene60886:CDS 25.0%
!! GAGTTCATAAATTTGAAGTT+AGG + chr2.3:32015096-32015115 MS.gene60886:CDS 25.0%
!! TGATGATGCAAATAAAGAAA+GGG + chr2.3:32014948-32014967 MS.gene60886:CDS 25.0%
!!! AAAACATCTTTTAATTTCCC+AGG - chr2.3:32015555-32015574 None:intergenic 25.0%
!!! AGCATGGTTGAATTTTTTTA+GGG + chr2.3:32015467-32015486 MS.gene60886:CDS 25.0%
!!! TTGAAGACATTCTTATTTTC+TGG - chr2.3:32013914-32013933 None:intergenic 25.0%
!!! TTGATGATGCAAATAAAGAA+AGG + chr2.3:32014947-32014966 MS.gene60886:CDS 25.0%
AATACTAGTGAGTAATCAAC+AGG - chr2.3:32014361-32014380 None:intergenic 30.0%
ACAAGAACATATCCAAAAAG+AGG - chr2.3:32014295-32014314 None:intergenic 30.0%
ATCAACATTCAGCAAAGTTT+GGG + chr2.3:32014162-32014181 MS.gene60886:CDS 30.0%
CTAAAAAAATTCAACCATGC+TGG - chr2.3:32015468-32015487 None:intergenic 30.0%
GGATATGGGAAAATATGTAT+TGG + chr2.3:32015407-32015426 MS.gene60886:CDS 30.0%
GTCTCAATTTGTGTTAGATT+AGG - chr2.3:32014727-32014746 None:intergenic 30.0%
TAGTAGATTATAGTGAATGC+AGG + chr2.3:32014050-32014069 MS.gene60886:CDS 30.0%
TATTTCTCTCAACATAATGG+TGG + chr2.3:32015198-32015217 MS.gene60886:CDS 30.0%
TCAAACATGAAATTGATGGA+GGG - chr2.3:32014675-32014694 None:intergenic 30.0%
TCACTATAATCTACTACAAG+AGG - chr2.3:32014046-32014065 None:intergenic 30.0%
TCTAGACTATAGTCAATATG+TGG - chr2.3:32015501-32015520 None:intergenic 30.0%
TGATAAAGGTAGCAATGTTA+TGG + chr2.3:32015386-32015405 MS.gene60886:CDS 30.0%
TTCAAACATGAAATTGATGG+AGG - chr2.3:32014676-32014695 None:intergenic 30.0%
! ATTGGTAGCCAAATATACAA+AGG - chr2.3:32014418-32014437 None:intergenic 30.0%
! GTCTATTTCTCTCAACATAA+TGG + chr2.3:32015195-32015214 MS.gene60886:CDS 30.0%
! TCTTTATTTGCATCATCAAC+AGG - chr2.3:32014946-32014965 None:intergenic 30.0%
! TGGATTTTCTACCCTTTTAA+TGG + chr2.3:32015054-32015073 MS.gene60886:CDS 30.0%
! TTGGTAGCCAAATATACAAA+GGG - chr2.3:32014417-32014436 None:intergenic 30.0%
!!! CAGCATGGTTGAATTTTTTT+AGG + chr2.3:32015466-32015485 MS.gene60886:CDS 30.0%
!!! GTTGAATTTTTTTAGGGAGT+GGG + chr2.3:32015473-32015492 MS.gene60886:CDS 30.0%
!!! TTGAATTTTTTTAGGGAGTG+GGG + chr2.3:32015474-32015493 MS.gene60886:CDS 30.0%
AAAAACCAATTGACAGAGGA+AGG - chr2.3:32014805-32014824 None:intergenic 35.0%
AAAAGGGTAGAAAATCCACA+TGG - chr2.3:32015052-32015071 None:intergenic 35.0%
AAGGAAAAGGGTAATTGGAA+TGG + chr2.3:32015636-32015655 MS.gene60886:CDS 35.0%
AATAAAGAAAGGGTCAAGCA+AGG + chr2.3:32014958-32014977 MS.gene60886:CDS 35.0%
AATGTTGAGAAGTTATTGCC+TGG + chr2.3:32015534-32015553 MS.gene60886:CDS 35.0%
ACTTATGGATACTCCATGTT+AGG + chr2.3:32014244-32014263 MS.gene60886:CDS 35.0%
AGGTAGCAATGTTATGGATA+TGG + chr2.3:32015392-32015411 MS.gene60886:CDS 35.0%
ATGTTGAGAAGTTATTGCCT+GGG + chr2.3:32015535-32015554 MS.gene60886:CDS 35.0%
CATCAACATTCAGCAAAGTT+TGG + chr2.3:32014161-32014180 MS.gene60886:CDS 35.0%
CTCGAAGAAGTTTGTGTAAT+AGG - chr2.3:32013989-32014008 None:intergenic 35.0%
CTTCATCAGGATGCAAATAT+AGG - chr2.3:32014774-32014793 None:intergenic 35.0%
CTTCATCTACTAGGGAAAAA+TGG + chr2.3:32015342-32015361 MS.gene60886:CDS 35.0%
CTTGTAGCAAAGGATATTTC+AGG + chr2.3:32014310-32014329 MS.gene60886:CDS 35.0%
GAAGGTAAGTATTCTTCATC+AGG - chr2.3:32014787-32014806 None:intergenic 35.0%
GACATTAAGGGTAAGTAACT+TGG + chr2.3:32015155-32015174 MS.gene60886:CDS 35.0%
GATATTTCAGGAAAGAGCAA+TGG + chr2.3:32014322-32014341 MS.gene60886:CDS 35.0%
GATGTTAGACCAATCAATAG+AGG + chr2.3:32014589-32014608 MS.gene60886:CDS 35.0%
GCAAGAGATGATACTGATAA+AGG + chr2.3:32015372-32015391 MS.gene60886:CDS 35.0%
GGTAGCAATGTTATGGATAT+GGG + chr2.3:32015393-32015412 MS.gene60886:CDS 35.0%
GTACATGTGAAACCAATGTT+TGG + chr2.3:32015006-32015025 MS.gene60886:CDS 35.0%
TAATAGGAAGCTTGAATGTG+TGG - chr2.3:32013973-32013992 None:intergenic 35.0%
TATTTGCATCATCAACAGGT+AGG - chr2.3:32014942-32014961 None:intergenic 35.0%
TCAACATTCAGCAAAGTTTG+GGG + chr2.3:32014163-32014182 MS.gene60886:CDS 35.0%
TCAGGATGCAAATATAGGAA+TGG - chr2.3:32014769-32014788 None:intergenic 35.0%
TGAGTCTTCTACATGGATTT+GGG + chr2.3:32014543-32014562 MS.gene60886:CDS 35.0%
TGGATATGTTCTTGTAGCAA+AGG + chr2.3:32014300-32014319 MS.gene60886:CDS 35.0%
TGGTAGCCAAATATACAAAG+GGG - chr2.3:32014416-32014435 None:intergenic 35.0%
TGTCTTCAAGAAAAAGAGAC+AGG + chr2.3:32013925-32013944 MS.gene60886:CDS 35.0%
TTAAGGGTAAGTAACTTGGA+TGG + chr2.3:32015159-32015178 MS.gene60886:CDS 35.0%
! AGTGTTGAATTGCAACATAC+AGG + chr2.3:32014085-32014104 MS.gene60886:CDS 35.0%
! ATTGGTTTCTGCAGAGTATT+TGG + chr2.3:32015425-32015444 MS.gene60886:CDS 35.0%
! CATTTTTCCCTAGTAGATGA+AGG - chr2.3:32015344-32015363 None:intergenic 35.0%
! GCTTTAGTTCCTCTATTGAT+TGG - chr2.3:32014601-32014620 None:intergenic 35.0%
! TTCCAATTACCCTTTTCCTT+TGG - chr2.3:32015636-32015655 None:intergenic 35.0%
!! CCAAAAAGAGGTTTGTTGTT+GGG - chr2.3:32014283-32014302 None:intergenic 35.0%
!! TCCAAAAAGAGGTTTGTTGT+TGG - chr2.3:32014284-32014303 None:intergenic 35.0%
!!! GGTTGAATTTTTTTAGGGAG+TGG + chr2.3:32015472-32015491 MS.gene60886:CDS 35.0%
!!! GTCAATTGGTTTTTCTCCAA+TGG + chr2.3:32014811-32014830 MS.gene60886:CDS 35.0%
AAATGGTACTAACCTTCCTC+AGG + chr2.3:32014885-32014904 MS.gene60886:CDS 40.0%
AAGACCCCCCTTTGTATATT+TGG + chr2.3:32014407-32014426 MS.gene60886:CDS 40.0%
AAGCTTGAATGTGTGGTCAA+TGG - chr2.3:32013966-32013985 None:intergenic 40.0%
AATAGAGGAACTAAAGCTCC+CGG + chr2.3:32014604-32014623 MS.gene60886:CDS 40.0%
ACACAAACTTCTTCGAGTGA+AGG + chr2.3:32013992-32014011 MS.gene60886:CDS 40.0%
ACATGAAATTGATGGAGGGT+TGG - chr2.3:32014671-32014690 None:intergenic 40.0%
ACTAGTGAGTAATCAACAGG+TGG - chr2.3:32014358-32014377 None:intergenic 40.0%
ACTTACCTTCCTCTGTCAAT+TGG + chr2.3:32014797-32014816 MS.gene60886:CDS 40.0%
AGCAATGTGAGTCTTCTACA+TGG + chr2.3:32014536-32014555 MS.gene60886:CDS 40.0%
AGCTTGAATGTGTGGTCAAT+GGG - chr2.3:32013965-32013984 None:intergenic 40.0%
ATAGGAATGGAGAGTAAGAG+TGG - chr2.3:32014756-32014775 None:intergenic 40.0%
CAATAGGCACCATCATTGTT+AGG - chr2.3:32014913-32014932 None:intergenic 40.0%
CATGTGAAACCAATGTTTGG+AGG + chr2.3:32015009-32015028 MS.gene60886:CDS 40.0%
CATTCACTGATATTGCCATG+TGG + chr2.3:32015034-32015053 MS.gene60886:CDS 40.0%
CCTGTTGCAATAGCACAAAA+TGG + chr2.3:32014868-32014887 MS.gene60886:CDS 40.0%
CTACTAGGGAAAAATGGAGT+AGG + chr2.3:32015348-32015367 MS.gene60886:CDS 40.0%
CTCAACATAATGGTGGTTCA+TGG + chr2.3:32015205-32015224 MS.gene60886:CDS 40.0%
CTGACACACATGACTTTGTT+GGG - chr2.3:32014502-32014521 None:intergenic 40.0%
CTTGTATAGTAACGCTCCAT+TGG - chr2.3:32014830-32014849 None:intergenic 40.0%
CTTTCCCAGGTCCATTAAAA+GGG - chr2.3:32015068-32015087 None:intergenic 40.0%
GAGTCTTCTACATGGATTTG+GGG + chr2.3:32014544-32014563 MS.gene60886:CDS 40.0%
GCAAACACAGTCATGAATCT+AGG + chr2.3:32014118-32014137 MS.gene60886:CDS 40.0%
GGAGAAAAACCAATTGACAG+AGG - chr2.3:32014809-32014828 None:intergenic 40.0%
GGGAAAATAGGTGAACATGT+TGG + chr2.3:32015117-32015136 MS.gene60886:CDS 40.0%
GGTAGCCAAATATACAAAGG+GGG - chr2.3:32014415-32014434 None:intergenic 40.0%
GTAACTTGGATGGTCAGTTA+TGG + chr2.3:32015169-32015188 MS.gene60886:CDS 40.0%
GTAGCCAAATATACAAAGGG+GGG - chr2.3:32014414-32014433 None:intergenic 40.0%
GTCCAAAGGAAAAGGGTAAT+TGG + chr2.3:32015631-32015650 MS.gene60886:CDS 40.0%
GTGAATGTTCCTCCAAACAT+TGG - chr2.3:32015021-32015040 None:intergenic 40.0%
GTGAGTCTTCTACATGGATT+TGG + chr2.3:32014542-32014561 MS.gene60886:CDS 40.0%
TAAACCACAGGTCTTTGTGT+CGG - chr2.3:32015282-32015301 None:intergenic 40.0%
TCTGACACACATGACTTTGT+TGG - chr2.3:32014503-32014522 None:intergenic 40.0%
TGACACACATGACTTTGTTG+GGG - chr2.3:32014501-32014520 None:intergenic 40.0%
! ATTGGGAGCATGTGACATTA+AGG + chr2.3:32015142-32015161 MS.gene60886:CDS 40.0%
! CCCAACAACAAACCTCTTTT+TGG + chr2.3:32014280-32014299 MS.gene60886:CDS 40.0%
! CTAACAATGATGGTGCCTAT+TGG + chr2.3:32014911-32014930 MS.gene60886:CDS 40.0%
! GGAGCGTTACTATACAAGAA+AGG + chr2.3:32014832-32014851 MS.gene60886:CDS 40.0%
! TTGGGAGCATGTGACATTAA+GGG + chr2.3:32015143-32015162 MS.gene60886:CDS 40.0%
!! AAAGAGGTTTGTTGTTGGGT+TGG - chr2.3:32014279-32014298 None:intergenic 40.0%
!! AACTCTACTTTTGCTTTCCC+AGG - chr2.3:32015081-32015100 None:intergenic 40.0%
!! AGGTGAACATGTTGGTGATT+GGG + chr2.3:32015125-32015144 MS.gene60886:CDS 40.0%
!! CCATTTTGTGCTATTGCAAC+AGG - chr2.3:32014871-32014890 None:intergenic 40.0%
!! GGTTTACCAAAAGAAGTGCT+GGG + chr2.3:32015591-32015610 MS.gene60886:CDS 40.0%
!! TAGGTGAACATGTTGGTGAT+TGG + chr2.3:32015124-32015143 MS.gene60886:CDS 40.0%
!! TCTACCCTTTTAATGGACCT+GGG + chr2.3:32015061-32015080 MS.gene60886:CDS 40.0%
!! TTCTACCCTTTTAATGGACC+TGG + chr2.3:32015060-32015079 MS.gene60886:CDS 40.0%
AACAGGTAGGTCAAGCCAAT+AGG - chr2.3:32014929-32014948 None:intergenic 45.0%
AAGACTCACATTGCTCTGTG+AGG - chr2.3:32014531-32014550 None:intergenic 45.0%
ACCAACAGGTCCAAAGGAAA+AGG + chr2.3:32015623-32015642 MS.gene60886:CDS 45.0%
ATTGAACACTGCATCCGTCA+CGG + chr2.3:32014378-32014397 MS.gene60886:CDS 45.0%
CATGACTGTGTTTGCGAAAC+TGG - chr2.3:32014113-32014132 None:intergenic 45.0%
CATGCATCATATCCACATGC+TGG + chr2.3:32015318-32015337 MS.gene60886:CDS 45.0%
CATTGTTAGGATCCTGAGGA+AGG - chr2.3:32014900-32014919 None:intergenic 45.0%
CCAACAGGTCCAAAGGAAAA+GGG + chr2.3:32015624-32015643 MS.gene60886:CDS 45.0%
CCATCATTGTTAGGATCCTG+AGG - chr2.3:32014904-32014923 None:intergenic 45.0%
CCTCAGGATCCTAACAATGA+TGG + chr2.3:32014901-32014920 MS.gene60886:CDS 45.0%
CTGAAGTTAAAGAGCCAGCA+TGG + chr2.3:32015451-32015470 MS.gene60886:CDS 45.0%
CTTGTGTTGTGGTGACAACA+AGG - chr2.3:32014468-32014487 None:intergenic 45.0%
GACACACATGACTTTGTTGG+GGG - chr2.3:32014500-32014519 None:intergenic 45.0%
GACCTGTGGTTTATGCTTCT+CGG + chr2.3:32015289-32015308 MS.gene60886:CDS 45.0%
GCTTGAATGTGTGGTCAATG+GGG - chr2.3:32013964-32013983 None:intergenic 45.0%
GCTTTCCCAGGTCCATTAAA+AGG - chr2.3:32015069-32015088 None:intergenic 45.0%
GGAAGGTTTGTCTTGTGTTG+TGG - chr2.3:32014479-32014498 None:intergenic 45.0%
GGTACCTTCGTTGCTCAAAA+TGG + chr2.3:32014637-32014656 MS.gene60886:CDS 45.0%
TATCCATAAGTCAGTCCCGT+TGG - chr2.3:32014235-32014254 None:intergenic 45.0%
TTGGCTGTAGCTTCCTAACA+TGG - chr2.3:32014260-32014279 None:intergenic 45.0%
! CTCACCATTTTGAGCAACGA+AGG - chr2.3:32014644-32014663 None:intergenic 45.0%
! GGGTTTACCAAAAGAAGTGC+TGG + chr2.3:32015590-32015609 MS.gene60886:CDS 45.0%
! TTTTCCGACACAAAGACCTG+TGG + chr2.3:32015275-32015294 MS.gene60886:CDS 45.0%
!! ATGCTGGCCTTCATCTACTA+GGG + chr2.3:32015334-32015353 MS.gene60886:CDS 45.0%
AGTAGATGAAGGCCAGCATG+TGG - chr2.3:32015333-32015352 None:intergenic 50.0%
CACATGACTTTGTTGGGGGA+AGG - chr2.3:32014496-32014515 None:intergenic 50.0%
CGCCTCAGTGTATGAACCAA+CGG + chr2.3:32014216-32014235 MS.gene60886:CDS 50.0%
GCCTCAGTGTATGAACCAAC+GGG + chr2.3:32014217-32014236 MS.gene60886:CDS 50.0%
GTGGTTTATGCTTCTCGGCA+TGG + chr2.3:32015294-32015313 MS.gene60886:CDS 50.0%
TGACAACAAGGCCTACAGCA+TGG - chr2.3:32014456-32014475 None:intergenic 50.0%
TGGCTACCAATAGCACCTGA+TGG + chr2.3:32014427-32014446 MS.gene60886:CDS 50.0%
! CCCTTTTCCTTTGGACCTGT+TGG - chr2.3:32015627-32015646 None:intergenic 50.0%
! GAACCAACGGGACTGACTTA+TGG + chr2.3:32014229-32014248 MS.gene60886:CDS 50.0%
! TCCTCTCCCAGCACTTCTTT+TGG - chr2.3:32015600-32015619 None:intergenic 50.0%
! TGCCGAGAAGCATAAACCAC+AGG - chr2.3:32015294-32015313 None:intergenic 50.0%
! TGGTAGCCATCAGGTGCTAT+TGG - chr2.3:32014436-32014455 None:intergenic 50.0%
!! AAAGAAGTGCTGGGAGAGGA+AGG + chr2.3:32015600-32015619 MS.gene60886:CDS 50.0%
!! ACCAAAAGAAGTGCTGGGAG+AGG + chr2.3:32015596-32015615 MS.gene60886:CDS 50.0%
!! CATGCTGGCCTTCATCTACT+AGG + chr2.3:32015333-32015352 MS.gene60886:CDS 50.0%
!! TCCCGTTGGTTCATACACTG+AGG - chr2.3:32014221-32014240 None:intergenic 50.0%
CCTACAGCATGGTAGCCATC+AGG - chr2.3:32014445-32014464 None:intergenic 55.0%
CCTGATGGCTACCATGCTGT+AGG + chr2.3:32014442-32014461 MS.gene60886:CDS 55.0%
GGAAGGACCAACAGGTCCAA+AGG + chr2.3:32015617-32015636 MS.gene60886:CDS 55.0%
GGGGTCTTGATCAACCGTGA+CGG - chr2.3:32014395-32014414 None:intergenic 55.0%
! AAAGTTTGGGGCGCCTACGA+AGG + chr2.3:32014175-32014194 MS.gene60886:CDS 55.0%
! AAGGTACCAACGCGAACACC+GGG - chr2.3:32014625-32014644 None:intergenic 55.0%
!! GAAGGTACCAACGCGAACAC+CGG - chr2.3:32014626-32014645 None:intergenic 55.0%
AAAGCTCCCGGTGTTCGCGT+TGG + chr2.3:32014616-32014635 MS.gene60886:CDS 60.0%
ATCGTCCGGTCCACCTTCGT+AGG - chr2.3:32014191-32014210 None:intergenic 60.0%
CTGGGAGAGGAAGGACCAAC+AGG + chr2.3:32015609-32015628 MS.gene60886:CDS 60.0%
GAAGGTGGACCGGACGATCA+AGG + chr2.3:32014193-32014212 MS.gene60886:CDS 60.0%
TGTGGTCAATGGGGCGAGAG+CGG - chr2.3:32013955-32013974 None:intergenic 60.0%
! ACTGAGGCGCCTTGATCGTC+CGG - chr2.3:32014205-32014224 None:intergenic 60.0%
GTGGTCAATGGGGCGAGAGC+GGG - chr2.3:32013954-32013973 None:intergenic 65.0%
! GTTTGGGGCGCCTACGAAGG+TGG + chr2.3:32014178-32014197 MS.gene60886:CDS 65.0%
GGGCGCCTACGAAGGTGGAC+CGG + chr2.3:32014183-32014202 MS.gene60886:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 32013899 32015671 32013899 ID=MS.gene60886
chr2.3 mRNA 32013899 32015671 32013899 ID=MS.gene60886.t1;Parent=MS.gene60886
chr2.3 exon 32013899 32015671 32013899 ID=MS.gene60886.t1.exon1;Parent=MS.gene60886.t1
chr2.3 CDS 32013899 32015671 32013899 ID=cds.MS.gene60886.t1;Parent=MS.gene60886.t1
Gene Sequence

>MS.gene60886

ATGTTTTCATTTCCAGAAAATAAGAATGTCTTCAAGAAAAAGAGACAGGTATCCCGCTCTCGCCCCATTGACCACACATTCAAGCTTCCTATTACACAAACTTCTTCGAGTGAAGGTATTGTTTATGCGATTTCAATTTTCTGTCCTCTTGTAGTAGATTATAGTGAATGCAGGCTAACTGTAACAAGTGTTGAATTGCAACATACAGGTACCAGTTTCGCAAACACAGTCATGAATCTAGGTGAGCTGCATGTGATGCAAGCATCAACATTCAGCAAAGTTTGGGGCGCCTACGAAGGTGGACCGGACGATCAAGGCGCCTCAGTGTATGAACCAACGGGACTGACTTATGGATACTCCATGTTAGGAAGCTACAGCCAACCCAACAACAAACCTCTTTTTGGATATGTTCTTGTAGCAAAGGATATTTCAGGAAAGAGCAATGGCACTTTAAAGCCACCTGTTGATTACTCACTAGTATTGAACACTGCATCCGTCACGGTTGATCAAGACCCCCCTTTGTATATTTGGCTACCAATAGCACCTGATGGCTACCATGCTGTAGGCCTTGTTGTCACCACAACACAAGACAAACCTTCCCCCAACAAAGTCATGTGTGTCAGATCAGACCTCACAGAGCAATGTGAGTCTTCTACATGGATTTGGGGATCAAACGACATAAATTTCTATGATGTTAGACCAATCAATAGAGGAACTAAAGCTCCCGGTGTTCGCGTTGGTACCTTCGTTGCTCAAAATGGTGAGAATACCAACCCTCCATCAATTTCATGTTTGAAAAATCTCAATGAAATTTCACAAATCATGCCTAATCTAACACAAATTGAGACAATACTCCACTCTTACTCTCCATTCCTATATTTGCATCCTGATGAAGAATACTTACCTTCCTCTGTCAATTGGTTTTTCTCCAATGGAGCGTTACTATACAAGAAAGGTGAAGAATCAAATCCTGTTGCAATAGCACAAAATGGTACTAACCTTCCTCAGGATCCTAACAATGATGGTGCCTATTGGCTTGACCTACCTGTTGATGATGCAAATAAAGAAAGGGTCAAGCAAGGTAATTTACAAAGTGCAGAATCTTATGTACATGTGAAACCAATGTTTGGAGGAACATTCACTGATATTGCCATGTGGATTTTCTACCCTTTTAATGGACCTGGGAAAGCAAAAGTAGAGTTCATAAATTTGAAGTTAGGGAAAATAGGTGAACATGTTGGTGATTGGGAGCATGTGACATTAAGGGTAAGTAACTTGGATGGTCAGTTATGGCATGTCTATTTCTCTCAACATAATGGTGGTTCATGGCTTGATGCATCTCAACTTGAGTTTCAAACTGATAATAGCAGTTTTGATTTTCCGACACAAAGACCTGTGGTTTATGCTTCTCGGCATGGTCATGCATCATATCCACATGCTGGCCTTCATCTACTAGGGAAAAATGGAGTAGGTGCAAGAGATGATACTGATAAAGGTAGCAATGTTATGGATATGGGAAAATATGTATTGGTTTCTGCAGAGTATTTGGAGTCTGAAGTTAAAGAGCCAGCATGGTTGAATTTTTTTAGGGAGTGGGGTCCACATATTGACTATAGTCTAGATGATGAGTTGAAGAATGTTGAGAAGTTATTGCCTGGGAAATTAAAAGATGTTTTTGAAAAAATTATTATGGGTTTACCAAAAGAAGTGCTGGGAGAGGAAGGACCAACAGGTCCAAAGGAAAAGGGTAATTGGAATGGTGATGAATTTTGA

Protein sequence

>MS.gene60886.t1

MFSFPENKNVFKKKRQVSRSRPIDHTFKLPITQTSSSEGIVYAISIFCPLVVDYSECRLTVTSVELQHTGTSFANTVMNLGELHVMQASTFSKVWGAYEGGPDDQGASVYEPTGLTYGYSMLGSYSQPNNKPLFGYVLVAKDISGKSNGTLKPPVDYSLVLNTASVTVDQDPPLYIWLPIAPDGYHAVGLVVTTTQDKPSPNKVMCVRSDLTEQCESSTWIWGSNDINFYDVRPINRGTKAPGVRVGTFVAQNGENTNPPSISCLKNLNEISQIMPNLTQIETILHSYSPFLYLHPDEEYLPSSVNWFFSNGALLYKKGEESNPVAIAQNGTNLPQDPNNDGAYWLDLPVDDANKERVKQGNLQSAESYVHVKPMFGGTFTDIAMWIFYPFNGPGKAKVEFINLKLGKIGEHVGDWEHVTLRVSNLDGQLWHVYFSQHNGGSWLDASQLEFQTDNSSFDFPTQRPVVYASRHGHASYPHAGLHLLGKNGVGARDDTDKGSNVMDMGKYVLVSAEYLESEVKEPAWLNFFREWGPHIDYSLDDELKNVEKLLPGKLKDVFEKIIMGLPKEVLGEEGPTGPKEKGNWNGDEF