Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042257.t1 | RHN64936.1 | 96.4 | 524 | 19 | 0 | 13 | 536 | 24 | 547 | 8.30E-308 | 1065.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042257.t1 | G7JI01 | 96.4 | 524 | 19 | 0 | 13 | 536 | 63 | 586 | 6.0e-308 | 1065.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012606 | MS.gene042257 | PPI |
| MS.gene061203 | MS.gene042257 | PPI |
| MS.gene60887 | MS.gene042257 | PPI |
| MS.gene043858 | MS.gene042257 | PPI |
| MS.gene60886 | MS.gene042257 | PPI |
| MS.gene60889 | MS.gene042257 | PPI |
| MS.gene043855 | MS.gene042257 | PPI |
| MS.gene60884 | MS.gene042257 | PPI |
| MS.gene52616 | MS.gene042257 | PPI |
| MS.gene000191 | MS.gene042257 | PPI |
| MS.gene043859 | MS.gene042257 | PPI |
| MS.gene33537 | MS.gene042257 | PPI |
| MS.gene042257 | MS.gene036433 | PPI |
| MS.gene000190 | MS.gene042257 | PPI |
| MS.gene005092 | MS.gene042257 | PPI |
| MS.gene042257 | MS.gene000192 | PPI |
| MS.gene60883 | MS.gene042257 | PPI |
| MS.gene042258 | MS.gene042257 | PPI |
| MS.gene042257 | MS.gene005097 | PPI |
| MS.gene60888 | MS.gene042257 | PPI |
| MS.gene000193 | MS.gene042257 | PPI |
| MS.gene60881 | MS.gene042257 | PPI |
| MS.gene036431 | MS.gene042257 | PPI |
| MS.gene005095 | MS.gene042257 | PPI |
| MS.gene43969 | MS.gene042257 | PPI |
| MS.gene52609 | MS.gene042257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042257.t1 | MTR_4g131710 | 96.374 | 524 | 19 | 0 | 13 | 536 | 63 | 586 | 0.0 | 1052 |
| MS.gene042257.t1 | MTR_2g062410 | 75.954 | 524 | 120 | 2 | 13 | 536 | 69 | 586 | 0.0 | 826 |
| MS.gene042257.t1 | MTR_2g062370 | 73.473 | 524 | 137 | 1 | 13 | 536 | 69 | 590 | 0.0 | 818 |
| MS.gene042257.t1 | MTR_2g062430 | 71.565 | 524 | 138 | 2 | 13 | 536 | 41 | 553 | 0.0 | 790 |
| MS.gene042257.t1 | MTR_2g062380 | 68.972 | 535 | 163 | 2 | 2 | 536 | 29 | 560 | 0.0 | 790 |
| MS.gene042257.t1 | MTR_2g067640 | 56.180 | 534 | 200 | 10 | 13 | 536 | 32 | 541 | 0.0 | 593 |
| MS.gene042257.t1 | MTR_2g062340 | 51.316 | 532 | 203 | 10 | 13 | 535 | 32 | 516 | 0.0 | 534 |
| MS.gene042257.t1 | MTR_1g080370 | 44.341 | 539 | 269 | 10 | 13 | 535 | 35 | 558 | 3.68e-159 | 465 |
| MS.gene042257.t1 | MTR_1g080410 | 44.341 | 539 | 269 | 10 | 13 | 535 | 35 | 558 | 3.68e-159 | 465 |
| MS.gene042257.t1 | MTR_5g007860 | 43.407 | 546 | 275 | 9 | 13 | 535 | 71 | 605 | 1.09e-155 | 458 |
| MS.gene042257.t1 | MTR_4g077620 | 44.199 | 543 | 268 | 13 | 13 | 535 | 40 | 567 | 6.81e-151 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042257.t1 | AT2G44260 | 52.622 | 534 | 238 | 6 | 4 | 535 | 62 | 582 | 0.0 | 581 |
| MS.gene042257.t1 | AT2G44260 | 52.952 | 525 | 232 | 6 | 13 | 535 | 41 | 552 | 0.0 | 576 |
| MS.gene042257.t1 | AT2G44230 | 51.796 | 529 | 234 | 7 | 12 | 536 | 31 | 542 | 0.0 | 565 |
| MS.gene042257.t1 | AT3G01870 | 45.574 | 531 | 263 | 8 | 13 | 535 | 71 | 583 | 5.07e-164 | 478 |
| MS.gene042257.t1 | AT3G01880 | 46.241 | 532 | 260 | 9 | 13 | 535 | 75 | 589 | 3.34e-162 | 474 |
| MS.gene042257.t1 | AT5G18490 | 44.963 | 536 | 263 | 10 | 13 | 536 | 37 | 552 | 6.43e-160 | 467 |
| MS.gene042257.t1 | AT3G04350 | 43.566 | 544 | 274 | 10 | 12 | 536 | 15 | 544 | 3.27e-157 | 459 |
| MS.gene042257.t1 | AT3G04350 | 43.646 | 543 | 273 | 10 | 13 | 536 | 38 | 566 | 1.74e-156 | 458 |
| MS.gene042257.t1 | AT5G43950 | 42.251 | 542 | 283 | 11 | 12 | 535 | 35 | 564 | 8.06e-147 | 434 |
| MS.gene042257.t1 | AT1G04090 | 43.248 | 548 | 273 | 14 | 13 | 535 | 36 | 570 | 2.47e-146 | 432 |
Find 112 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAACGTTTAACAAAATT+TGG | 0.066286 | 8.2:-3418339 | MS.gene042257:CDS |
| CAAAATTGCTAGTATCATTT+TGG | 0.131465 | 8.2:+3417240 | None:intergenic |
| CGAAATTTCTTCGTCGATTT+GGG | 0.192513 | 8.2:-3417954 | MS.gene042257:CDS |
| GCGAAATTTCTTCGTCGATT+TGG | 0.194682 | 8.2:-3417955 | MS.gene042257:CDS |
| GACATTAAGGGTAAGTAATT+TGG | 0.218905 | 8.2:-3417336 | MS.gene042257:CDS |
| GCTTGAGTTCCTCTACTTAT+TGG | 0.237504 | 8.2:+3417899 | None:intergenic |
| TCCTCTTGCAACATTTCTTT+TGG | 0.247710 | 8.2:+3416894 | None:intergenic |
| GTAATTTGGATGGTAAATTA+TGG | 0.253190 | 8.2:-3417322 | MS.gene042257:CDS |
| TGATCTTTGAAATGGAATTA+AGG | 0.258367 | 8.2:+3417798 | None:intergenic |
| ATCAACGTTTAACAAAATTT+GGG | 0.287048 | 8.2:-3418338 | MS.gene042257:CDS |
| ACTGGGAGCATGTGACATTA+AGG | 0.288797 | 8.2:-3417349 | MS.gene042257:CDS |
| AAGTAACAAAGTTATGGATA+TGG | 0.311164 | 8.2:-3417099 | MS.gene042257:CDS |
| CAAAATTTGAGTAGCTGAAT+AGG | 0.318702 | 8.2:+3418105 | None:intergenic |
| CAATAGGCGCGGTCATGTTT+AGG | 0.320126 | 8.2:+3417581 | None:intergenic |
| CTAAACATGACCGCGCCTAT+TGG | 0.333364 | 8.2:-3417580 | MS.gene042257:CDS |
| AAATTGAAGAAGTTGTTTCT+AGG | 0.346682 | 8.2:-3416957 | MS.gene042257:CDS |
| CATGCTGGCCTTGTTCTACT+AGG | 0.347802 | 8.2:-3417158 | MS.gene042257:CDS |
| GCTTTAATTTGTTGTAGATT+AGG | 0.348824 | 8.2:+3417773 | None:intergenic |
| CCAAATGGCTACCGTGCTTT+AGG | 0.353128 | 8.2:-3418055 | MS.gene042257:CDS |
| GCGCGGTCATGTTTAGGATT+AGG | 0.354023 | 8.2:+3417587 | None:intergenic |
| CTGATCATACAAACAAAGAT+AGG | 0.360712 | 8.2:-3417544 | MS.gene042257:CDS |
| AATACAAATGTGTAATCAAT+TGG | 0.386535 | 8.2:+3418139 | None:intergenic |
| CCTAGACCAATAGCACAAAA+TGG | 0.392047 | 8.2:-3417629 | MS.gene042257:CDS |
| CCTAAAGCACGGTAGCCATT+TGG | 0.392578 | 8.2:+3418055 | None:intergenic |
| ATTAGGCATGATCTTTGAAA+TGG | 0.397170 | 8.2:+3417790 | None:intergenic |
| GGATATGGGGAAATATGTAT+TGG | 0.401878 | 8.2:-3417084 | MS.gene042257:CDS |
| AGTAACAAAGTTATGGATAT+GGG | 0.402734 | 8.2:-3417098 | MS.gene042257:CDS |
| TGGTTTCTGCAGAGTATTTG+AGG | 0.402772 | 8.2:-3417064 | MS.gene042257:CDS |
| GAATTGCAACATACAGGTAA+TGG | 0.407691 | 8.2:-3418409 | MS.gene042257:CDS |
| CCTCAAGGATTCTCTATGTT+AGG | 0.416568 | 8.2:-3418256 | MS.gene042257:CDS |
| AAAATTTGGGGAGCCATTGA+TGG | 0.426406 | 8.2:-3418325 | MS.gene042257:CDS |
| TGGCTTTAATGTGCTCTTTG+TGG | 0.427124 | 8.2:+3418162 | None:intergenic |
| ACTTACCTTCATCAGTCAAT+TGG | 0.427526 | 8.2:-3417700 | MS.gene042257:CDS |
| AATTGAAGAAGTTGTTTCTA+GGG | 0.430110 | 8.2:-3416956 | MS.gene042257:CDS |
| GATGGTGGACCGGATGATAA+AGG | 0.432800 | 8.2:-3418307 | MS.gene042257:CDS |
| CTTGTATAGTAATGCTCCAT+TGG | 0.433338 | 8.2:+3417670 | None:intergenic |
| TGCAATGAAGCATGAACAAC+AGG | 0.439399 | 8.2:+3417200 | None:intergenic |
| TCTTTGTTTGTATGATCAGC+TGG | 0.440103 | 8.2:+3417548 | None:intergenic |
| CACATCATAAGACAGGTTCA+TGG | 0.444967 | 8.2:-3417286 | MS.gene042257:CDS |
| GCCTCAGTGTTCGAACCAAC+AGG | 0.448044 | 8.2:-3418283 | MS.gene042257:CDS |
| GCGAGAGGAGTCCTCGATCT+AGG | 0.448860 | 8.2:-3418382 | MS.gene042257:CDS |
| TCAGGATGTAGGTATAGAAA+TGG | 0.449014 | 8.2:+3417731 | None:intergenic |
| CGGTAGCCATTTGGAGCTAC+TGG | 0.451064 | 8.2:+3418064 | None:intergenic |
| TCTTCGTCGATTTGGGAATC+CGG | 0.451276 | 8.2:-3417947 | MS.gene042257:CDS |
| GTACATGTGAAACCAATGTT+TGG | 0.455920 | 8.2:-3417485 | MS.gene042257:CDS |
| ACCTGTATGTTGCAATTCAA+TGG | 0.458661 | 8.2:+3418414 | None:intergenic |
| TTGCAAGAGGAAGGACCAAC+AGG | 0.458852 | 8.2:-3416882 | MS.gene042257:CDS |
| AACCTTCCAGGTCCATTGAA+AGG | 0.472890 | 8.2:+3417425 | None:intergenic |
| ACCTTCCAGGTCCATTGAAA+GGG | 0.477333 | 8.2:+3417426 | None:intergenic |
| GTTGTTCATGCTTCATTGCA+TGG | 0.479910 | 8.2:-3417197 | MS.gene042257:CDS |
| GGTTTCTGCAGAGTATTTGA+GGG | 0.480067 | 8.2:-3417063 | MS.gene042257:CDS |
| ACCATTGAATTGCAACATAC+AGG | 0.488345 | 8.2:-3418415 | MS.gene042257:CDS |
| ATCATCCGGTCCACCATCAA+TGG | 0.492503 | 8.2:+3418312 | None:intergenic |
| AAATGGTACTAACCTTCCTC+AGG | 0.498248 | 8.2:-3417612 | MS.gene042257:CDS |
| AATGTTAAATTAGAGAGAAT+AGG | 0.502401 | 8.2:-3417386 | MS.gene042257:CDS |
| CTGGGAGCATGTGACATTAA+GGG | 0.504616 | 8.2:-3417348 | MS.gene042257:CDS |
| AGCTGGTAGGTCTATCCAAT+AGG | 0.505188 | 8.2:+3417565 | None:intergenic |
| CTATAAAAGTTCAACCATGC+TGG | 0.506747 | 8.2:+3417026 | None:intergenic |
| GTCATAGAAATTGAAGTCTC+CGG | 0.508375 | 8.2:+3417928 | None:intergenic |
| AAAGAGGTTTGTTGTTGGGT+TGG | 0.517837 | 8.2:+3418224 | None:intergenic |
| GGGAGCCATTGATGGTGGAC+CGG | 0.519648 | 8.2:-3418317 | MS.gene042257:CDS |
| TAGGTGAACATGTTGGTGAC+TGG | 0.528649 | 8.2:-3417367 | MS.gene042257:CDS |
| TATTTCTCACATCATAAGAC+AGG | 0.534217 | 8.2:-3417293 | MS.gene042257:CDS |
| TGTTTGTATGATCAGCTGGT+AGG | 0.536283 | 8.2:+3417552 | None:intergenic |
| ACCAAAAGAAATGTTGCAAG+AGG | 0.544639 | 8.2:-3416895 | MS.gene042257:CDS |
| ACAAATGTGTAATCAATTGG+TGG | 0.545480 | 8.2:+3418142 | None:intergenic |
| GGAAGGACCAACAGGTCCAA+AGG | 0.546506 | 8.2:-3416874 | MS.gene042257:CDS |
| TTCAAACATGAAATAGATGG+AGG | 0.547187 | 8.2:+3417824 | None:intergenic |
| ACTGAGGCTCCTTTATCATC+CGG | 0.547432 | 8.2:+3418298 | None:intergenic |
| GTGAAGGTTCCTCCAAACAT+TGG | 0.547819 | 8.2:+3417473 | None:intergenic |
| AATCCTTGAGGTATTCCTGT+TGG | 0.552718 | 8.2:+3418268 | None:intergenic |
| TGGCTACCAGTAGCTCCAAA+TGG | 0.555141 | 8.2:-3418070 | MS.gene042257:CDS |
| AAAGAAATGTTGCAAGAGGA+AGG | 0.566876 | 8.2:-3416891 | MS.gene042257:CDS |
| GGAGCATTACTATACAAGAA+AGG | 0.567167 | 8.2:-3417665 | MS.gene042257:CDS |
| ATGCTGGCCTTGTTCTACTA+GGG | 0.569406 | 8.2:-3417157 | MS.gene042257:CDS |
| TCTAACTTATAGTCAACATG+TGG | 0.575589 | 8.2:+3416993 | None:intergenic |
| ATTTGGGGAGCCATTGATGG+TGG | 0.576760 | 8.2:-3418322 | MS.gene042257:CDS |
| CAAGCTCGAGGCATTCATGT+AGG | 0.578639 | 8.2:-3417881 | MS.gene042257:CDS |
| TGATCATACAAACAAAGATA+GGG | 0.582823 | 8.2:-3417543 | MS.gene042257:CDS |
| TAGGATTAGGACCCTGAGGA+AGG | 0.585115 | 8.2:+3417600 | None:intergenic |
| ACCCTTTCAATGGACCTGGA+AGG | 0.585334 | 8.2:-3417427 | MS.gene042257:CDS |
| CATTCAACATATCCACATGC+TGG | 0.585598 | 8.2:-3417173 | MS.gene042257:CDS |
| CAGCATGTGGATATGTTGAA+TGG | 0.587256 | 8.2:+3417174 | None:intergenic |
| TCAAACATGAAATAGATGGA+GGG | 0.594887 | 8.2:+3417825 | None:intergenic |
| TTAAGGGTAAGTAATTTGGA+TGG | 0.595987 | 8.2:-3417332 | MS.gene042257:CDS |
| AGGTGAACATGTTGGTGACT+GGG | 0.596607 | 8.2:-3417366 | MS.gene042257:CDS |
| ACAGGTAATGGTTTCGCGAG+AGG | 0.598849 | 8.2:-3418397 | MS.gene042257:CDS |
| GTAACAAAGTTATGGATATG+GGG | 0.600950 | 8.2:-3417097 | MS.gene042257:CDS |
| TCAACGTTTAACAAAATTTG+GGG | 0.601243 | 8.2:-3418337 | MS.gene042257:CDS |
| ACGTTGATACTGTAGACACT+TGG | 0.605593 | 8.2:+3418353 | None:intergenic |
| GAGAGAATAGGTGAACATGT+TGG | 0.607765 | 8.2:-3417374 | MS.gene042257:CDS |
| AGAGGAGTCCTCGATCTAGG+TGG | 0.612378 | 8.2:-3418379 | MS.gene042257:CDS |
| GAGGAGTCCTCGATCTAGGT+GGG | 0.614351 | 8.2:-3418378 | MS.gene042257:CDS |
| CATGTGAAACCAATGTTTGG+AGG | 0.614379 | 8.2:-3417482 | MS.gene042257:CDS |
| AAATTTCGCATTTCTCTGTG+AGG | 0.618922 | 8.2:+3417969 | None:intergenic |
| CCACATTGCAAAATCAGTGA+AGG | 0.620887 | 8.2:+3417457 | None:intergenic |
| TGACGACATGGCCTAAAGCA+CGG | 0.634701 | 8.2:+3418044 | None:intergenic |
| GACGTTAGACCAATAAGTAG+AGG | 0.639362 | 8.2:-3417908 | MS.gene042257:CDS |
| GTAAAGTTAAAGAGCCAGCA+TGG | 0.641409 | 8.2:-3417040 | MS.gene042257:CDS |
| GTTTCTGCAGAGTATTTGAG+GGG | 0.641453 | 8.2:-3417062 | MS.gene042257:CDS |
| AGTAGAACAAGGCCAGCATG+TGG | 0.653698 | 8.2:+3417161 | None:intergenic |
| ACTGGTAGCCAAATATACAA+AGG | 0.659249 | 8.2:+3418082 | None:intergenic |
| AACAAAGATAGGGTCAAACA+AGG | 0.663777 | 8.2:-3417533 | MS.gene042257:CDS |
| CTTGGAGCCCACCTAGATCG+AGG | 0.667633 | 8.2:+3418371 | None:intergenic |
| GAACCAACAGGAATACCTCA+AGG | 0.672260 | 8.2:-3418271 | MS.gene042257:CDS |
| TCCTGTTGGTTCGAACACTG+AGG | 0.676070 | 8.2:+3418282 | None:intergenic |
| AGTAGAGGAACTCAAGCTCG+AGG | 0.676376 | 8.2:-3417893 | MS.gene042257:CDS |
| TGTTTAGGATTAGGACCCTG+AGG | 0.683877 | 8.2:+3417596 | None:intergenic |
| AATGGTACTAACCTTCCTCA+GGG | 0.693194 | 8.2:-3417611 | MS.gene042257:CDS |
| CCTAACATAGAGAATCCTTG+AGG | 0.700330 | 8.2:+3418256 | None:intergenic |
| CTAACTTATAGTCAACATGT+GGG | 0.708098 | 8.2:+3416994 | None:intergenic |
| GTAGGTCTATCCAATAGGCG+CGG | 0.731921 | 8.2:+3417570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTGAAAAAGTTATT+AGG | - | chr8.2:3418349-3418368 | MS.gene042257:CDS | 15.0% |
| !!! | TGTTTTTGAAAAAGTTATTA+GGG | - | chr8.2:3418350-3418369 | MS.gene042257:CDS | 15.0% |
| !! | AATACAAATGTGTAATCAAT+TGG | + | chr8.2:3417136-3417155 | None:intergenic | 20.0% |
| !! | AATGTTAAATTAGAGAGAAT+AGG | - | chr8.2:3417886-3417905 | MS.gene042257:CDS | 20.0% |
| !! | ATCAACGTTTAACAAAATTT+GGG | - | chr8.2:3416934-3416953 | MS.gene042257:CDS | 20.0% |
| !! | TATCAACGTTTAACAAAATT+TGG | - | chr8.2:3416933-3416952 | MS.gene042257:CDS | 20.0% |
| !! | TGAAAAAAGTAACAAAGTTA+TGG | - | chr8.2:3418167-3418186 | MS.gene042257:CDS | 20.0% |
| !!! | AAATTTTGCCTTTGTATATT+TGG | - | chr8.2:3417182-3417201 | MS.gene042257:CDS | 20.0% |
| !!! | GTTTTTGAAAAAGTTATTAG+GGG | - | chr8.2:3418351-3418370 | MS.gene042257:CDS | 20.0% |
| !!! | TTTTTCAAACATGAAATAGA+TGG | + | chr8.2:3417454-3417473 | None:intergenic | 20.0% |
| ! | AAGGAAAAGAAAAATTGGAA+TGG | - | chr8.2:3418417-3418436 | MS.gene042257:CDS | 25.0% |
| ! | AAGTAACAAAGTTATGGATA+TGG | - | chr8.2:3418173-3418192 | MS.gene042257:CDS | 25.0% |
| ! | AGTAACAAAGTTATGGATAT+GGG | - | chr8.2:3418174-3418193 | MS.gene042257:CDS | 25.0% |
| ! | GTAATTTGGATGGTAAATTA+TGG | - | chr8.2:3417950-3417969 | MS.gene042257:CDS | 25.0% |
| ! | TCAACGTTTAACAAAATTTG+GGG | - | chr8.2:3416935-3416954 | MS.gene042257:CDS | 25.0% |
| ! | TGATCATACAAACAAAGATA+GGG | - | chr8.2:3417729-3417748 | MS.gene042257:CDS | 25.0% |
| !! | CAAAATTGCTAGTATCATTT+TGG | + | chr8.2:3418035-3418054 | None:intergenic | 25.0% |
| !! | TTCCAATTTTTCTTTTCCTT+TGG | + | chr8.2:3418417-3418436 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTTGTTTCT+AGG | - | chr8.2:3418315-3418334 | MS.gene042257:CDS | 25.0% |
| !!! | AATTGAAGAAGTTGTTTCTA+GGG | - | chr8.2:3418316-3418335 | MS.gene042257:CDS | 25.0% |
| !!! | GCTTTAATTTGTTGTAGATT+AGG | + | chr8.2:3417502-3417521 | None:intergenic | 25.0% |
| !!! | TGATCTTTGAAATGGAATTA+AGG | + | chr8.2:3417477-3417496 | None:intergenic | 25.0% |
| AAAAACCAATTGACTGATGA+AGG | + | chr8.2:3417580-3417599 | None:intergenic | 30.0% | |
| ACAAATGTGTAATCAATTGG+TGG | + | chr8.2:3417133-3417152 | None:intergenic | 30.0% | |
| CAAAATTTGAGTAGCTGAAT+AGG | + | chr8.2:3417170-3417189 | None:intergenic | 30.0% | |
| CTAACTTATAGTCAACATGT+GGG | + | chr8.2:3418281-3418300 | None:intergenic | 30.0% | |
| CTGATCATACAAACAAAGAT+AGG | - | chr8.2:3417728-3417747 | MS.gene042257:CDS | 30.0% | |
| GACATTAAGGGTAAGTAATT+TGG | - | chr8.2:3417936-3417955 | MS.gene042257:CDS | 30.0% | |
| GTAACAAAGTTATGGATATG+GGG | - | chr8.2:3418175-3418194 | MS.gene042257:CDS | 30.0% | |
| GTCCAAAGGAAAAGAAAAAT+TGG | - | chr8.2:3418412-3418431 | MS.gene042257:CDS | 30.0% | |
| TATTTCTCACATCATAAGAC+AGG | - | chr8.2:3417979-3417998 | MS.gene042257:CDS | 30.0% | |
| TCAAACATGAAATAGATGGA+GGG | + | chr8.2:3417450-3417469 | None:intergenic | 30.0% | |
| TCTAACTTATAGTCAACATG+TGG | + | chr8.2:3418282-3418301 | None:intergenic | 30.0% | |
| TTAAGGGTAAGTAATTTGGA+TGG | - | chr8.2:3417940-3417959 | MS.gene042257:CDS | 30.0% | |
| TTCAAACATGAAATAGATGG+AGG | + | chr8.2:3417451-3417470 | None:intergenic | 30.0% | |
| ! | AACACACATGATTTTGTCAA+GGG | + | chr8.2:3417275-3417294 | None:intergenic | 30.0% |
| ! | AGTATTTTTCATCAGGATGT+AGG | + | chr8.2:3417555-3417574 | None:intergenic | 30.0% |
| ! | ATTAGGCATGATCTTTGAAA+TGG | + | chr8.2:3417485-3417504 | None:intergenic | 30.0% |
| ! | GAAGGTAAGTATTTTTCATC+AGG | + | chr8.2:3417562-3417581 | None:intergenic | 30.0% |
| ! | GTTGAACTTTTATAGGACAT+GGG | - | chr8.2:3418254-3418273 | MS.gene042257:CDS | 30.0% |
| ! | TAACACACATGATTTTGTCA+AGG | + | chr8.2:3417276-3417295 | None:intergenic | 30.0% |
| ! | TTAGTACCATTTTGTGCTAT+TGG | + | chr8.2:3417652-3417671 | None:intergenic | 30.0% |
| ! | TTGAACTTTTATAGGACATG+GGG | - | chr8.2:3418255-3418274 | MS.gene042257:CDS | 30.0% |
| !!! | ATTTTGGAATTCAAGTTGAG+AGG | + | chr8.2:3418019-3418038 | None:intergenic | 30.0% |
| AAAGAAATGTTGCAAGAGGA+AGG | - | chr8.2:3418381-3418400 | MS.gene042257:CDS | 35.0% | |
| AAATTTCGCATTTCTCTGTG+AGG | + | chr8.2:3417306-3417325 | None:intergenic | 35.0% | |
| AACAAAGATAGGGTCAAACA+AGG | - | chr8.2:3417739-3417758 | MS.gene042257:CDS | 35.0% | |
| ACAAGAACATACCCAAAAAG+AGG | + | chr8.2:3417067-3417086 | None:intergenic | 35.0% | |
| ACCAAAAGAAATGTTGCAAG+AGG | - | chr8.2:3418377-3418396 | MS.gene042257:CDS | 35.0% | |
| ACCATTGAATTGCAACATAC+AGG | - | chr8.2:3416857-3416876 | MS.gene042257:CDS | 35.0% | |
| ACCTGTATGTTGCAATTCAA+TGG | + | chr8.2:3416861-3416880 | None:intergenic | 35.0% | |
| ACTGGTAGCCAAATATACAA+AGG | + | chr8.2:3417193-3417212 | None:intergenic | 35.0% | |
| ACTTACCTTCATCAGTCAAT+TGG | - | chr8.2:3417572-3417591 | MS.gene042257:CDS | 35.0% | |
| CTACTAGGGAAAAAAGGAAT+AGG | - | chr8.2:3418129-3418148 | MS.gene042257:CDS | 35.0% | |
| CTATAAAAGTTCAACCATGC+TGG | + | chr8.2:3418249-3418268 | None:intergenic | 35.0% | |
| CTTGTATAGTAATGCTCCAT+TGG | + | chr8.2:3417605-3417624 | None:intergenic | 35.0% | |
| CTTGTTCTACTAGGGAAAAA+AGG | - | chr8.2:3418123-3418142 | MS.gene042257:CDS | 35.0% | |
| GAATTGCAACATACAGGTAA+TGG | - | chr8.2:3416863-3416882 | MS.gene042257:CDS | 35.0% | |
| GACCTGGAAGGTTAAAAATA+GGG | - | chr8.2:3417857-3417876 | MS.gene042257:CDS | 35.0% | |
| GGATATGGGGAAATATGTAT+TGG | - | chr8.2:3418188-3418207 | MS.gene042257:CDS | 35.0% | |
| GTACATGTGAAACCAATGTT+TGG | - | chr8.2:3417787-3417806 | MS.gene042257:CDS | 35.0% | |
| GTCATAGAAATTGAAGTCTC+CGG | + | chr8.2:3417347-3417366 | None:intergenic | 35.0% | |
| TCAGGATGTAGGTATAGAAA+TGG | + | chr8.2:3417544-3417563 | None:intergenic | 35.0% | |
| ! | ACACACATGATTTTGTCAAG+GGG | + | chr8.2:3417274-3417293 | None:intergenic | 35.0% |
| ! | CAGCATGGTTGAACTTTTAT+AGG | - | chr8.2:3418247-3418266 | MS.gene042257:CDS | 35.0% |
| ! | CCAACAACAAACCTCTTTTT+GGG | - | chr8.2:3417053-3417072 | MS.gene042257:CDS | 35.0% |
| ! | GGAGCATTACTATACAAGAA+AGG | - | chr8.2:3417607-3417626 | MS.gene042257:CDS | 35.0% |
| ! | GGTTGAACTTTTATAGGACA+TGG | - | chr8.2:3418253-3418272 | MS.gene042257:CDS | 35.0% |
| ! | TCCTCTTGCAACATTTCTTT+TGG | + | chr8.2:3418381-3418400 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGTATGATCAGC+TGG | + | chr8.2:3417727-3417746 | None:intergenic | 35.0% |
| ! | TGAACAACAGGTCTTTTTGT+TGG | + | chr8.2:3418063-3418082 | None:intergenic | 35.0% |
| ! | TGGACTTTTTACCCTTTCAA+TGG | - | chr8.2:3417835-3417854 | MS.gene042257:CDS | 35.0% |
| !! | CCAAAAAGAGGTTTGTTGTT+GGG | + | chr8.2:3417055-3417074 | None:intergenic | 35.0% |
| !! | CGAAATTTCTTCGTCGATTT+GGG | - | chr8.2:3417318-3417337 | MS.gene042257:CDS | 35.0% |
| !!! | AACCCTATTTTTAACCTTCC+AGG | + | chr8.2:3417862-3417881 | None:intergenic | 35.0% |
| !!! | CTTTTTTCCCTAGTAGAACA+AGG | + | chr8.2:3418125-3418144 | None:intergenic | 35.0% |
| !!! | GTCAATTGGTTTTTCTCCAA+TGG | - | chr8.2:3417586-3417605 | MS.gene042257:CDS | 35.0% |
| !!! | TCTTTTTGGGTATGTTCTTG+TGG | - | chr8.2:3417066-3417085 | MS.gene042257:CDS | 35.0% |
| AAAATTTGGGGAGCCATTGA+TGG | - | chr8.2:3416947-3416966 | MS.gene042257:CDS | 40.0% | |
| AAATGGTACTAACCTTCCTC+AGG | - | chr8.2:3417660-3417679 | MS.gene042257:CDS | 40.0% | |
| AATGGTACTAACCTTCCTCA+GGG | - | chr8.2:3417661-3417680 | MS.gene042257:CDS | 40.0% | |
| ACGTTGATACTGTAGACACT+TGG | + | chr8.2:3416922-3416941 | None:intergenic | 40.0% | |
| CACATCATAAGACAGGTTCA+TGG | - | chr8.2:3417986-3418005 | MS.gene042257:CDS | 40.0% | |
| CAGCATGTGGATATGTTGAA+TGG | + | chr8.2:3418101-3418120 | None:intergenic | 40.0% | |
| CATGTGAAACCAATGTTTGG+AGG | - | chr8.2:3417790-3417809 | MS.gene042257:CDS | 40.0% | |
| CATTCAACATATCCACATGC+TGG | - | chr8.2:3418099-3418118 | MS.gene042257:CDS | 40.0% | |
| CCACATTGCAAAATCAGTGA+AGG | + | chr8.2:3417818-3417837 | None:intergenic | 40.0% | |
| CCTAACATAGAGAATCCTTG+AGG | + | chr8.2:3417019-3417038 | None:intergenic | 40.0% | |
| CCTAGACCAATAGCACAAAA+TGG | - | chr8.2:3417643-3417662 | MS.gene042257:CDS | 40.0% | |
| CCTCAAGGATTCTCTATGTT+AGG | - | chr8.2:3417016-3417035 | MS.gene042257:CDS | 40.0% | |
| GACGTTAGACCAATAAGTAG+AGG | - | chr8.2:3417364-3417383 | MS.gene042257:CDS | 40.0% | |
| GAGAGAATAGGTGAACATGT+TGG | - | chr8.2:3417898-3417917 | MS.gene042257:CDS | 40.0% | |
| GCTTGAGTTCCTCTACTTAT+TGG | + | chr8.2:3417376-3417395 | None:intergenic | 40.0% | |
| GGACCTGGAAGGTTAAAAAT+AGG | - | chr8.2:3417856-3417875 | MS.gene042257:CDS | 40.0% | |
| GTAAAGTTAAAGAGCCAGCA+TGG | - | chr8.2:3418232-3418251 | MS.gene042257:CDS | 40.0% | |
| GTTGTTCATGCTTCATTGCA+TGG | - | chr8.2:3418075-3418094 | MS.gene042257:CDS | 40.0% | |
| TGCAATGAAGCATGAACAAC+AGG | + | chr8.2:3418075-3418094 | None:intergenic | 40.0% | |
| TGTTTGTATGATCAGCTGGT+AGG | + | chr8.2:3417723-3417742 | None:intergenic | 40.0% | |
| ! | AATCCTTGAGGTATTCCTGT+TGG | + | chr8.2:3417007-3417026 | None:intergenic | 40.0% |
| ! | CCCAACAACAAACCTCTTTT+TGG | - | chr8.2:3417052-3417071 | MS.gene042257:CDS | 40.0% |
| ! | GCGAAATTTCTTCGTCGATT+TGG | - | chr8.2:3417317-3417336 | MS.gene042257:CDS | 40.0% |
| ! | GGCACTTTTGTTGCACAAAA+TGG | - | chr8.2:3417412-3417431 | MS.gene042257:CDS | 40.0% |
| ! | GGTTTCTGCAGAGTATTTGA+GGG | - | chr8.2:3418209-3418228 | MS.gene042257:CDS | 40.0% |
| ! | GTTTCTGCAGAGTATTTGAG+GGG | - | chr8.2:3418210-3418229 | MS.gene042257:CDS | 40.0% |
| ! | TGGTTTCTGCAGAGTATTTG+AGG | - | chr8.2:3418208-3418227 | MS.gene042257:CDS | 40.0% |
| ! | TTCTTTTCCTTTGGACCTGT+TGG | + | chr8.2:3418408-3418427 | None:intergenic | 40.0% |
| ! | TTTTACCCTTTCAATGGACC+TGG | - | chr8.2:3417841-3417860 | MS.gene042257:CDS | 40.0% |
| !! | AAAGAGGTTTGTTGTTGGGT+TGG | + | chr8.2:3417051-3417070 | None:intergenic | 40.0% |
| !! | CCATTTTGTGCTATTGGTCT+AGG | + | chr8.2:3417646-3417665 | None:intergenic | 40.0% |
| !! | CCCAAAAAGAGGTTTGTTGT+TGG | + | chr8.2:3417056-3417075 | None:intergenic | 40.0% |
| !! | TGGCTTTAATGTGCTCTTTG+TGG | + | chr8.2:3417113-3417132 | None:intergenic | 40.0% |
| !!! | CCTTCACTGATTTTGCAATG+TGG | - | chr8.2:3417815-3417834 | MS.gene042257:CDS | 40.0% |
| AACCTTCCAGGTCCATTGAA+AGG | + | chr8.2:3417850-3417869 | None:intergenic | 45.0% | |
| ACCTTCCAGGTCCATTGAAA+GGG | + | chr8.2:3417849-3417868 | None:intergenic | 45.0% | |
| ACTGAGGCTCCTTTATCATC+CGG | + | chr8.2:3416977-3416996 | None:intergenic | 45.0% | |
| AGCTGGTAGGTCTATCCAAT+AGG | + | chr8.2:3417710-3417729 | None:intergenic | 45.0% | |
| GAACCAACAGGAATACCTCA+AGG | - | chr8.2:3417001-3417020 | MS.gene042257:CDS | 45.0% | |
| GTGAAGGTTCCTCCAAACAT+TGG | + | chr8.2:3417802-3417821 | None:intergenic | 45.0% | |
| ! | ACTGGGAGCATGTGACATTA+AGG | - | chr8.2:3417923-3417942 | MS.gene042257:CDS | 45.0% |
| ! | CACATGATTTTGTCAAGGGG+AGG | + | chr8.2:3417271-3417290 | None:intergenic | 45.0% |
| ! | CTGGGAGCATGTGACATTAA+GGG | - | chr8.2:3417924-3417943 | MS.gene042257:CDS | 45.0% |
| ! | TGTTTAGGATTAGGACCCTG+AGG | + | chr8.2:3417679-3417698 | None:intergenic | 45.0% |
| !! | AGGTGAACATGTTGGTGACT+GGG | - | chr8.2:3417906-3417925 | MS.gene042257:CDS | 45.0% |
| !! | ATGCTGGCCTTGTTCTACTA+GGG | - | chr8.2:3418115-3418134 | MS.gene042257:CDS | 45.0% |
| !! | TAGGTGAACATGTTGGTGAC+TGG | - | chr8.2:3417905-3417924 | MS.gene042257:CDS | 45.0% |
| !! | TCTTCGTCGATTTGGGAATC+CGG | - | chr8.2:3417325-3417344 | MS.gene042257:CDS | 45.0% |
| !!! | CTCGTGTTTTAGTGACGACA+TGG | + | chr8.2:3417243-3417262 | None:intergenic | 45.0% |
| ACCCTTTCAATGGACCTGGA+AGG | - | chr8.2:3417845-3417864 | MS.gene042257:CDS | 50.0% | |
| AGTAGAACAAGGCCAGCATG+TGG | + | chr8.2:3418114-3418133 | None:intergenic | 50.0% | |
| AGTAGAGGAACTCAAGCTCG+AGG | - | chr8.2:3417379-3417398 | MS.gene042257:CDS | 50.0% | |
| ATCATCCGGTCCACCATCAA+TGG | + | chr8.2:3416963-3416982 | None:intergenic | 50.0% | |
| ATTTGGGGAGCCATTGATGG+TGG | - | chr8.2:3416950-3416969 | MS.gene042257:CDS | 50.0% | |
| CAATAGGCGCGGTCATGTTT+AGG | + | chr8.2:3417694-3417713 | None:intergenic | 50.0% | |
| CCAAATGGCTACCGTGCTTT+AGG | - | chr8.2:3417217-3417236 | MS.gene042257:CDS | 50.0% | |
| CCTAAAGCACGGTAGCCATT+TGG | + | chr8.2:3417220-3417239 | None:intergenic | 50.0% | |
| CTAAACATGACCGCGCCTAT+TGG | - | chr8.2:3417692-3417711 | MS.gene042257:CDS | 50.0% | |
| GTAGGTCTATCCAATAGGCG+CGG | + | chr8.2:3417705-3417724 | None:intergenic | 50.0% | |
| TAGGATTAGGACCCTGAGGA+AGG | + | chr8.2:3417675-3417694 | None:intergenic | 50.0% | |
| TGACGACATGGCCTAAAGCA+CGG | + | chr8.2:3417231-3417250 | None:intergenic | 50.0% | |
| TGGCTACCAGTAGCTCCAAA+TGG | - | chr8.2:3417202-3417221 | MS.gene042257:CDS | 50.0% | |
| TTGCAAGAGGAAGGACCAAC+AGG | - | chr8.2:3418390-3418409 | MS.gene042257:CDS | 50.0% | |
| ! | ACAGGTAATGGTTTCGCGAG+AGG | - | chr8.2:3416875-3416894 | MS.gene042257:CDS | 50.0% |
| ! | CAAGCTCGAGGCATTCATGT+AGG | - | chr8.2:3417391-3417410 | MS.gene042257:CDS | 50.0% |
| ! | GCGCGGTCATGTTTAGGATT+AGG | + | chr8.2:3417688-3417707 | None:intergenic | 50.0% |
| !! | CATGCTGGCCTTGTTCTACT+AGG | - | chr8.2:3418114-3418133 | MS.gene042257:CDS | 50.0% |
| !! | GATGGTGGACCGGATGATAA+AGG | - | chr8.2:3416965-3416984 | MS.gene042257:CDS | 50.0% |
| !! | TCCTGTTGGTTCGAACACTG+AGG | + | chr8.2:3416993-3417012 | None:intergenic | 50.0% |
| AGAGGAGTCCTCGATCTAGG+TGG | - | chr8.2:3416893-3416912 | MS.gene042257:CDS | 55.0% | |
| GAGGAGTCCTCGATCTAGGT+GGG | - | chr8.2:3416894-3416913 | MS.gene042257:CDS | 55.0% | |
| GCCTCAGTGTTCGAACCAAC+AGG | - | chr8.2:3416989-3417008 | MS.gene042257:CDS | 55.0% | |
| GGAAGGACCAACAGGTCCAA+AGG | - | chr8.2:3418398-3418417 | MS.gene042257:CDS | 55.0% | |
| ! | CGGTAGCCATTTGGAGCTAC+TGG | + | chr8.2:3417211-3417230 | None:intergenic | 55.0% |
| CTTGGAGCCCACCTAGATCG+AGG | + | chr8.2:3416904-3416923 | None:intergenic | 60.0% | |
| GCGAGAGGAGTCCTCGATCT+AGG | - | chr8.2:3416890-3416909 | MS.gene042257:CDS | 60.0% | |
| !! | GGGAGCCATTGATGGTGGAC+CGG | - | chr8.2:3416955-3416974 | MS.gene042257:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 3416842 | 3418452 | 3416842 | ID=MS.gene042257 |
| chr8.2 | mRNA | 3416842 | 3418452 | 3416842 | ID=MS.gene042257.t1;Parent=MS.gene042257 |
| chr8.2 | exon | 3416842 | 3418452 | 3416842 | ID=MS.gene042257.t1.exon1;Parent=MS.gene042257.t1 |
| chr8.2 | CDS | 3416842 | 3418452 | 3416842 | ID=cds.MS.gene042257.t1;Parent=MS.gene042257.t1 |
| Gene Sequence |
| Protein sequence |
