AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60883


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60883.t1 MTR_2g062370 87.905 587 37 3 6 589 34 589 0.0 1038
MS.gene60883.t1 MTR_2g062380 84.240 533 84 0 58 590 28 560 0.0 945
MS.gene60883.t1 MTR_2g062410 76.441 590 103 3 1 589 31 585 0.0 916
MS.gene60883.t1 MTR_2g062430 68.900 582 138 5 9 589 13 552 0.0 827
MS.gene60883.t1 MTR_4g131710 68.803 593 149 4 1 590 27 586 0.0 818
MS.gene60883.t1 MTR_2g067640 56.309 531 201 8 70 590 32 541 0.0 601
MS.gene60883.t1 MTR_2g062340 51.789 531 199 10 70 589 32 516 1.04e-178 515
MS.gene60883.t1 MTR_1g080370 45.911 538 261 9 70 590 35 559 2.59e-163 478
MS.gene60883.t1 MTR_1g080410 45.911 538 261 9 70 590 35 559 2.59e-163 478
MS.gene60883.t1 MTR_5g007860 43.693 547 269 9 70 589 71 605 1.31e-154 457
MS.gene60883.t1 MTR_4g077620 44.712 539 268 11 70 589 40 567 8.71e-149 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60883.t1 AT2G44260 53.480 589 258 7 3 589 8 582 0.0 634
MS.gene60883.t1 AT2G44260 57.854 522 208 5 70 589 41 552 0.0 623
MS.gene60883.t1 AT2G44230 53.143 525 228 6 69 589 31 541 0.0 566
MS.gene60883.t1 AT3G01870 48.674 528 248 7 70 589 71 583 2.36e-176 512
MS.gene60883.t1 AT3G01880 48.393 529 250 8 70 589 75 589 7.39e-173 503
MS.gene60883.t1 AT5G18490 44.944 534 263 9 70 590 37 552 2.92e-159 467
MS.gene60883.t1 AT3G04350 44.015 543 270 10 69 590 15 544 1.41e-153 452
MS.gene60883.t1 AT3G04350 44.096 542 269 10 70 590 38 566 3.96e-153 452
MS.gene60883.t1 AT5G43950 41.899 537 289 8 69 589 35 564 1.04e-144 430
MS.gene60883.t1 AT1G04090 41.392 546 283 12 70 589 36 570 1.36e-141 422

Find 138 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTCCCCTTTGTATATT+TGG 0.124214 2.3:+32065756 MS.gene60883:CDS
GCTTTCCCAGGTCCATTAAA+AGG 0.194984 2.3:-32066415 None:intergenic
ATTGGTTTCTGCAGAGTATT+TGG 0.229797 2.3:+32066774 MS.gene60883:CDS
CTTGTAGCAAAGGATATTTC+AGG 0.255851 2.3:+32065659 MS.gene60883:CDS
AGGTAGCAATGTTATGGATA+TGG 0.258056 2.3:+32066741 MS.gene60883:CDS
CTCGAAGAAGTTTGTGTAAT+AGG 0.259429 2.3:-32065335 None:intergenic
GTGAGTCTTCTACATGGATT+TGG 0.274745 2.3:+32065891 MS.gene60883:CDS
CATCAACATTCAGCAAAGTT+TGG 0.275579 2.3:+32065510 MS.gene60883:CDS
TCCTCTCCCAGCACTTCTTT+TGG 0.282938 2.3:-32066946 None:intergenic
ATTGGGAGCATGTGACATTA+AGG 0.285039 2.3:+32066491 MS.gene60883:CDS
GTCCAAAGGAAAAGGGTAAT+TGG 0.292083 2.3:+32066980 MS.gene60883:CDS
CATGACTGTGTTTGCGAAAC+TGG 0.292140 2.3:-32065459 None:intergenic
AATTTGAAGTTAGGGAAAAT+AGG 0.310027 2.3:+32066454 MS.gene60883:CDS
ATCAACATTCAGCAAAGTTT+GGG 0.318101 2.3:+32065511 MS.gene60883:CDS
GGTACCTTCGTTGCTCAAAA+TGG 0.332082 2.3:+32065986 MS.gene60883:CDS
GAGTTCATAAATTTGAAGTT+AGG 0.341852 2.3:+32066445 MS.gene60883:CDS
TGAGTCTTCTACATGGATTT+GGG 0.342802 2.3:+32065892 MS.gene60883:CDS
GCTTTAGTTCCTCTATTGAT+TGG 0.347877 2.3:-32065947 None:intergenic
GAACCAACGGGACTGACTTA+TGG 0.352846 2.3:+32065578 MS.gene60883:CDS
GACCTGTGGTTTATGCTTCT+CGG 0.360096 2.3:+32066638 MS.gene60883:CDS
CTTCATCAGGATGCAAATAT+AGG 0.366519 2.3:-32066120 None:intergenic
CATGCTGGCCTTCATCTACT+AGG 0.369862 2.3:+32066682 MS.gene60883:CDS
CTGACACACATGACTTTGTT+GGG 0.371564 2.3:-32065848 None:intergenic
CTCAACATAATGGTGGTTCA+TGG 0.380091 2.3:+32066554 MS.gene60883:CDS
GTCTATTTCTCTCAACATAA+TGG 0.382864 2.3:+32066544 MS.gene60883:CDS
TCTGACACACATGACTTTGT+TGG 0.395634 2.3:-32065849 None:intergenic
CTAACAATGATGGTGCCTAT+TGG 0.409794 2.3:+32066260 MS.gene60883:CDS
CAATAGGCACCATCATTGTT+AGG 0.412763 2.3:-32066259 None:intergenic
TGATAAAGGTAGCAATGTTA+TGG 0.414830 2.3:+32066735 MS.gene60883:CDS
AGTTCATAAATTTGAAGTTA+GGG 0.416307 2.3:+32066446 MS.gene60883:CDS
ACTTACCTTCCTCTGTCAAT+TGG 0.417119 2.3:+32066146 MS.gene60883:CDS
ACTTATGGATACTCCATGTT+AGG 0.419517 2.3:+32065593 MS.gene60883:CDS
GTCTCAATTTGTGTTAGATT+AGG 0.420473 2.3:-32066073 None:intergenic
AGCTTGAATGTGTGGTCAAT+GGG 0.428759 2.3:-32065311 None:intergenic
GCAAGAGATGATACTGATAA+AGG 0.429248 2.3:+32066721 MS.gene60883:CDS
TCTTTATTTGCATCGTCAAC+AGG 0.432547 2.3:-32066292 None:intergenic
GGATATGGGAAAATATGTAT+TGG 0.435630 2.3:+32066756 MS.gene60883:CDS
ACCAACAGGTCCAAAGGAAA+AGG 0.437204 2.3:+32066972 MS.gene60883:CDS
CCTGTTGCAATAGCACAAAA+TGG 0.439644 2.3:+32066217 MS.gene60883:CDS
GAAGGTAAGTATTCTTCATC+AGG 0.444599 2.3:-32066133 None:intergenic
GGGTTTACCAAAAGAAGTGC+TGG 0.449038 2.3:+32066939 MS.gene60883:CDS
GGTAGCAATGTTATGGATAT+GGG 0.449769 2.3:+32066742 MS.gene60883:CDS
AATGTTGAGAAGTTATTGCC+TGG 0.454803 2.3:+32066883 MS.gene60883:CDS
GTACATGTGAAACCAATGTT+TGG 0.455920 2.3:+32066355 MS.gene60883:CDS
AATACTAGTGAGTAATCAAC+AGG 0.461578 2.3:-32065707 None:intergenic
CTTGTATAGTAACGCTCCAT+TGG 0.467093 2.3:-32066176 None:intergenic
TAGGTGAACATGTTGGTGAT+TGG 0.478019 2.3:+32066473 MS.gene60883:CDS
GCAAACACAGTCATGAATCT+AGG 0.478598 2.3:+32065467 MS.gene60883:CDS
TGGTAGCCATCAGGTGCTAT+TGG 0.479434 2.3:-32065782 None:intergenic
CTGGGAGAGGAAGGACCAAC+AGG 0.482050 2.3:+32066958 MS.gene60883:CDS
GGAAGGTTTGTCTTGTGTTG+TGG 0.484281 2.3:-32065825 None:intergenic
GTGGTTTATGCTTCTCGGCA+TGG 0.484909 2.3:+32066643 MS.gene60883:CDS
ACTGAGGCGCCTTGATCGTC+CGG 0.485272 2.3:-32065551 None:intergenic
TTGGTAGCCAAATATACAAA+GGG 0.494599 2.3:-32065763 None:intergenic
ATAGGAATGGAGAGTAAGAG+TGG 0.495814 2.3:-32066102 None:intergenic
TTGACGATGCAAATAAAGAA+AGG 0.500336 2.3:+32066296 MS.gene60883:CDS
CTTTCCCAGGTCCATTAAAA+GGG 0.501041 2.3:-32066414 None:intergenic
GTGGTCAATGGGGCGAGAGC+GGG 0.505037 2.3:-32065300 None:intergenic
GACATTAAGGGTAAGTAACT+TGG 0.505898 2.3:+32066504 MS.gene60883:CDS
TGGATATGTTCTTGTAGCAA+AGG 0.506215 2.3:+32065649 MS.gene60883:CDS
TTGGCTGTAGCTTCCTAACA+TGG 0.507947 2.3:-32065606 None:intergenic
AACAGGTAGGTCAAGCCAAT+AGG 0.509711 2.3:-32066275 None:intergenic
AGGTGAACATGTTGGTGATT+GGG 0.511142 2.3:+32066474 MS.gene60883:CDS
AGTGTTGAATTGCAACATAC+AGG 0.515646 2.3:+32065434 MS.gene60883:CDS
GAAGGTACCAACGCGAACAC+CGG 0.518336 2.3:-32065972 None:intergenic
GCCTCAGTGTATGAACCAAC+GGG 0.521228 2.3:+32065566 MS.gene60883:CDS
GAAGGTGGACCGGACGATCA+AGG 0.523730 2.3:+32065542 MS.gene60883:CDS
AAGCTTGAATGTGTGGTCAA+TGG 0.525417 2.3:-32065312 None:intergenic
TTGGGAGCATGTGACATTAA+GGG 0.526297 2.3:+32066492 MS.gene60883:CDS
CCTCAGGATCCTAACAATGA+TGG 0.528215 2.3:+32066250 MS.gene60883:CDS
CCTACAGCATGGTAGCCATC+AGG 0.530924 2.3:-32065791 None:intergenic
GTGAATGTTCCTCCAAACAT+TGG 0.533393 2.3:-32066367 None:intergenic
CCAACAGGTCCAAAGGAAAA+GGG 0.535094 2.3:+32066973 MS.gene60883:CDS
AAGGTACCAACGCGAACACC+GGG 0.535734 2.3:-32065971 None:intergenic
TTCAAACATGAAATTGATGG+AGG 0.536359 2.3:-32066022 None:intergenic
ACATGAAATTGATGGAGGGT+TGG 0.537969 2.3:-32066017 None:intergenic
CTGAAGTTAAAGAGCCAGAA+TGG 0.539770 2.3:+32066800 MS.gene60883:CDS
AAAGAGGTTTGTTGTTGGGT+TGG 0.542937 2.3:-32065625 None:intergenic
GTAACTTGGATGGTCAGTTA+TGG 0.544808 2.3:+32066518 MS.gene60883:CDS
AAATGGTACTAACCTTCCTC+AGG 0.545862 2.3:+32066234 MS.gene60883:CDS
GGAAGGACCAACAGGTCCAA+AGG 0.546506 2.3:+32066966 MS.gene60883:CDS
TCACTATAATCTACTACAAG+AGG 0.551185 2.3:-32065392 None:intergenic
TCTAGACTATAGTCAATATG+TGG 0.557808 2.3:-32066847 None:intergenic
AAAGAAGTGCTGGGAGAGGA+AGG 0.559112 2.3:+32066949 MS.gene60883:CDS
ATGTTGAGAAGTTATTGCCT+GGG 0.560794 2.3:+32066884 MS.gene60883:CDS
CGCCTCAGTGTATGAACCAA+CGG 0.561230 2.3:+32065565 MS.gene60883:CDS
ATGCTGGCCTTCATCTACTA+GGG 0.562857 2.3:+32066683 MS.gene60883:CDS
TGACGATGCAAATAAAGAAA+GGG 0.564676 2.3:+32066297 MS.gene60883:CDS
TGTGGTCAATGGGGCGAGAG+CGG 0.565396 2.3:-32065301 None:intergenic
AAGGAAAAGGGTAATTGGAA+TGG 0.567477 2.3:+32066985 MS.gene60883:CDS
TAGTAGATTATAGTGAATGC+AGG 0.567559 2.3:+32065399 MS.gene60883:CDS
AATAGAGGAACTAAAGCTCC+CGG 0.568897 2.3:+32065953 MS.gene60883:CDS
CATTGTTAGGATCCTGAGGA+AGG 0.572703 2.3:-32066246 None:intergenic
ACACAAACTTCTTCGAGTGA+AGG 0.574944 2.3:+32065341 MS.gene60883:CDS
TCAAACATGAAATTGATGGA+GGG 0.575731 2.3:-32066021 None:intergenic
CATGCATCATATCCACATGC+TGG 0.576287 2.3:+32066667 MS.gene60883:CDS
GTTTGGGGCGCCTACGAAGG+TGG 0.577121 2.3:+32065527 MS.gene60883:CDS
CTTGTGTTGTGGTGACAACA+AGG 0.577689 2.3:-32065814 None:intergenic
TGACACACATGACTTTGTTG+GGG 0.578338 2.3:-32065847 None:intergenic
GATATTTCAGGAAAGAGTAA+TGG 0.579239 2.3:+32065671 MS.gene60883:CDS
ATTGGTAGCCAAATATACAA+AGG 0.583699 2.3:-32065764 None:intergenic
GGGCGCCTACGAAGGTGGAC+CGG 0.583899 2.3:+32065532 MS.gene60883:CDS
TCAGGATGCAAATATAGGAA+TGG 0.588386 2.3:-32066115 None:intergenic
ACCAAAAGAAGTGCTGGGAG+AGG 0.590505 2.3:+32066945 MS.gene60883:CDS
GATGTTAGACCAATCAATAG+AGG 0.591766 2.3:+32065938 MS.gene60883:CDS
ATCGTCCGGTCCACCTTCGT+AGG 0.592536 2.3:-32065537 None:intergenic
TATTTCTCTCAACATAATGG+TGG 0.595363 2.3:+32066547 MS.gene60883:CDS
AAAGTTTGGGGCGCCTACGA+AGG 0.597769 2.3:+32065524 MS.gene60883:CDS
GGGAAAATAGGTGAACATGT+TGG 0.598707 2.3:+32066466 MS.gene60883:CDS
GGAGCGTTACTATACAAGAA+AGG 0.600026 2.3:+32066181 MS.gene60883:CDS
CCTGATGGCTACCATGCTGT+AGG 0.611461 2.3:+32065791 MS.gene60883:CDS
CATGTGAAACCAATGTTTGG+AGG 0.614379 2.3:+32066358 MS.gene60883:CDS
AGCAATGTGAGTCTTCTACA+TGG 0.615710 2.3:+32065885 MS.gene60883:CDS
GAGTCTTCTACATGGATTTG+GGG 0.615942 2.3:+32065893 MS.gene60883:CDS
TATTTGCATCGTCAACAGGT+AGG 0.616449 2.3:-32066288 None:intergenic
GGTTTACCAAAAGAAGTGCT+GGG 0.616870 2.3:+32066940 MS.gene60883:CDS
TATCCATAAGTCAGTCCCGT+TGG 0.618765 2.3:-32065581 None:intergenic
CCATCATTGTTAGGATCCTG+AGG 0.623207 2.3:-32066250 None:intergenic
TGCCGAGAAGCATAAACCAC+AGG 0.627638 2.3:-32066640 None:intergenic
AATAAAGAAAGGGTCAAGCA+AGG 0.630463 2.3:+32066307 MS.gene60883:CDS
TCAACATTCAGCAAAGTTTG+GGG 0.632154 2.3:+32065512 MS.gene60883:CDS
AGTAGATGAAGGCCAGCATG+TGG 0.633143 2.3:-32066679 None:intergenic
TGGCTACCAATAGCACCTGA+TGG 0.636406 2.3:+32065776 MS.gene60883:CDS
AAAGCTCCCGGTGTTCGCGT+TGG 0.645605 2.3:+32065965 MS.gene60883:CDS
ATTGAACACTGCATCCGTCA+CGG 0.650457 2.3:+32065727 MS.gene60883:CDS
TGACAACAAGGCCTACAGCA+TGG 0.652162 2.3:-32065802 None:intergenic
TAATAGGAAGCTTGAATGTG+TGG 0.654960 2.3:-32065319 None:intergenic
TAAACCACAGGTCTTTGTGT+CGG 0.656244 2.3:-32066628 None:intergenic
GACACACATGACTTTGTTGG+GGG 0.656587 2.3:-32065846 None:intergenic
TTAAGGGTAAGTAACTTGGA+TGG 0.663636 2.3:+32066508 MS.gene60883:CDS
GGAGTCTTGATCAACCGTGA+CGG 0.669237 2.3:-32065741 None:intergenic
ACTAGTGAGTAATCAACAGG+TGG 0.691530 2.3:-32065704 None:intergenic
AAGACTCACATTGCTCTGTG+AGG 0.699723 2.3:-32065877 None:intergenic
TGGTAGCCAAATATACAAAG+GGG 0.704831 2.3:-32065762 None:intergenic
CATTCACTGATATTGCCATG+TGG 0.716023 2.3:+32066383 MS.gene60883:CDS
GCTTGAATGTGTGGTCAATG+GGG 0.727664 2.3:-32065310 None:intergenic
TCCCGTTGGTTCATACACTG+AGG 0.727884 2.3:-32065567 None:intergenic
AAAAGGGTAGAAAATCCACA+TGG 0.732112 2.3:-32066398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGAAAAAATTATTAT+GGG + chr2.3:32066919-32066938 MS.gene60883:CDS 10.0%
!!! TGTTTTTGAAAAAATTATTA+TGG + chr2.3:32066918-32066937 MS.gene60883:CDS 10.0%
!!! AGAATGGTTGAATTTTTTTA+GGG + chr2.3:32066816-32066835 MS.gene60883:CDS 20.0%
!!! AGTTCATAAATTTGAAGTTA+GGG + chr2.3:32066446-32066465 MS.gene60883:CDS 20.0%
!!! TTTTTCAAACATGAAATTGA+TGG - chr2.3:32066028-32066047 None:intergenic 20.0%
! CTAAAAAAATTCAACCATTC+TGG - chr2.3:32066817-32066836 None:intergenic 25.0%
!! AATTTGAAGTTAGGGAAAAT+AGG + chr2.3:32066454-32066473 MS.gene60883:CDS 25.0%
!! GAGTTCATAAATTTGAAGTT+AGG + chr2.3:32066445-32066464 MS.gene60883:CDS 25.0%
!!! AAAACATCTTTTAATTTCCC+AGG - chr2.3:32066904-32066923 None:intergenic 25.0%
!!! CAGAATGGTTGAATTTTTTT+AGG + chr2.3:32066815-32066834 MS.gene60883:CDS 25.0%
!!! TTGAAGACATTCTTATTTTC+TGG - chr2.3:32065263-32065282 None:intergenic 25.0%
AATACTAGTGAGTAATCAAC+AGG - chr2.3:32065710-32065729 None:intergenic 30.0%
ACAAGAACATATCCAAAAAG+AGG - chr2.3:32065644-32065663 None:intergenic 30.0%
ATCAACATTCAGCAAAGTTT+GGG + chr2.3:32065511-32065530 MS.gene60883:CDS 30.0%
GATATTTCAGGAAAGAGTAA+TGG + chr2.3:32065671-32065690 MS.gene60883:CDS 30.0%
GGATATGGGAAAATATGTAT+TGG + chr2.3:32066756-32066775 MS.gene60883:CDS 30.0%
GTCTCAATTTGTGTTAGATT+AGG - chr2.3:32066076-32066095 None:intergenic 30.0%
TAGTAGATTATAGTGAATGC+AGG + chr2.3:32065399-32065418 MS.gene60883:CDS 30.0%
TATTTCTCTCAACATAATGG+TGG + chr2.3:32066547-32066566 MS.gene60883:CDS 30.0%
TCAAACATGAAATTGATGGA+GGG - chr2.3:32066024-32066043 None:intergenic 30.0%
TCACTATAATCTACTACAAG+AGG - chr2.3:32065395-32065414 None:intergenic 30.0%
TCTAGACTATAGTCAATATG+TGG - chr2.3:32066850-32066869 None:intergenic 30.0%
TGACGATGCAAATAAAGAAA+GGG + chr2.3:32066297-32066316 MS.gene60883:CDS 30.0%
TGATAAAGGTAGCAATGTTA+TGG + chr2.3:32066735-32066754 MS.gene60883:CDS 30.0%
TTCAAACATGAAATTGATGG+AGG - chr2.3:32066025-32066044 None:intergenic 30.0%
TTGACGATGCAAATAAAGAA+AGG + chr2.3:32066296-32066315 MS.gene60883:CDS 30.0%
! ATTGGTAGCCAAATATACAA+AGG - chr2.3:32065767-32065786 None:intergenic 30.0%
! GTCTATTTCTCTCAACATAA+TGG + chr2.3:32066544-32066563 MS.gene60883:CDS 30.0%
! TGGATTTTCTACCCTTTTAA+TGG + chr2.3:32066403-32066422 MS.gene60883:CDS 30.0%
! TTGGTAGCCAAATATACAAA+GGG - chr2.3:32065766-32065785 None:intergenic 30.0%
!!! GTTGAATTTTTTTAGGGAGT+GGG + chr2.3:32066822-32066841 MS.gene60883:CDS 30.0%
!!! TTGAATTTTTTTAGGGAGTG+GGG + chr2.3:32066823-32066842 MS.gene60883:CDS 30.0%
AAAAACCAATTGACAGAGGA+AGG - chr2.3:32066154-32066173 None:intergenic 35.0%
AAAAGGGTAGAAAATCCACA+TGG - chr2.3:32066401-32066420 None:intergenic 35.0%
AAGACTCCCCTTTGTATATT+TGG + chr2.3:32065756-32065775 MS.gene60883:CDS 35.0%
AAGGAAAAGGGTAATTGGAA+TGG + chr2.3:32066985-32067004 MS.gene60883:CDS 35.0%
AATAAAGAAAGGGTCAAGCA+AGG + chr2.3:32066307-32066326 MS.gene60883:CDS 35.0%
AATGTTGAGAAGTTATTGCC+TGG + chr2.3:32066883-32066902 MS.gene60883:CDS 35.0%
ACTTATGGATACTCCATGTT+AGG + chr2.3:32065593-32065612 MS.gene60883:CDS 35.0%
AGGTAGCAATGTTATGGATA+TGG + chr2.3:32066741-32066760 MS.gene60883:CDS 35.0%
ATGTTGAGAAGTTATTGCCT+GGG + chr2.3:32066884-32066903 MS.gene60883:CDS 35.0%
CATCAACATTCAGCAAAGTT+TGG + chr2.3:32065510-32065529 MS.gene60883:CDS 35.0%
CTCGAAGAAGTTTGTGTAAT+AGG - chr2.3:32065338-32065357 None:intergenic 35.0%
CTTCATCAGGATGCAAATAT+AGG - chr2.3:32066123-32066142 None:intergenic 35.0%
CTTCATCTACTAGGGAAAAA+TGG + chr2.3:32066691-32066710 MS.gene60883:CDS 35.0%
CTTGTAGCAAAGGATATTTC+AGG + chr2.3:32065659-32065678 MS.gene60883:CDS 35.0%
GAAGGTAAGTATTCTTCATC+AGG - chr2.3:32066136-32066155 None:intergenic 35.0%
GACATTAAGGGTAAGTAACT+TGG + chr2.3:32066504-32066523 MS.gene60883:CDS 35.0%
GATGTTAGACCAATCAATAG+AGG + chr2.3:32065938-32065957 MS.gene60883:CDS 35.0%
GCAAGAGATGATACTGATAA+AGG + chr2.3:32066721-32066740 MS.gene60883:CDS 35.0%
GGTAGCAATGTTATGGATAT+GGG + chr2.3:32066742-32066761 MS.gene60883:CDS 35.0%
GTACATGTGAAACCAATGTT+TGG + chr2.3:32066355-32066374 MS.gene60883:CDS 35.0%
TAATAGGAAGCTTGAATGTG+TGG - chr2.3:32065322-32065341 None:intergenic 35.0%
TCAACATTCAGCAAAGTTTG+GGG + chr2.3:32065512-32065531 MS.gene60883:CDS 35.0%
TCAGGATGCAAATATAGGAA+TGG - chr2.3:32066118-32066137 None:intergenic 35.0%
TGAGTCTTCTACATGGATTT+GGG + chr2.3:32065892-32065911 MS.gene60883:CDS 35.0%
TGGATATGTTCTTGTAGCAA+AGG + chr2.3:32065649-32065668 MS.gene60883:CDS 35.0%
TGGTAGCCAAATATACAAAG+GGG - chr2.3:32065765-32065784 None:intergenic 35.0%
TGTCTTCAAGAAAAAGAGAC+AGG + chr2.3:32065274-32065293 MS.gene60883:CDS 35.0%
TTAAGGGTAAGTAACTTGGA+TGG + chr2.3:32066508-32066527 MS.gene60883:CDS 35.0%
! AGTGTTGAATTGCAACATAC+AGG + chr2.3:32065434-32065453 MS.gene60883:CDS 35.0%
! ATTGGTTTCTGCAGAGTATT+TGG + chr2.3:32066774-32066793 MS.gene60883:CDS 35.0%
! CATTTTTCCCTAGTAGATGA+AGG - chr2.3:32066693-32066712 None:intergenic 35.0%
! GCTTTAGTTCCTCTATTGAT+TGG - chr2.3:32065950-32065969 None:intergenic 35.0%
! TCTTTATTTGCATCGTCAAC+AGG - chr2.3:32066295-32066314 None:intergenic 35.0%
! TTCCAATTACCCTTTTCCTT+TGG - chr2.3:32066985-32067004 None:intergenic 35.0%
!! CCAAAAAGAGGTTTGTTGTT+GGG - chr2.3:32065632-32065651 None:intergenic 35.0%
!! TCCAAAAAGAGGTTTGTTGT+TGG - chr2.3:32065633-32065652 None:intergenic 35.0%
!!! GGTTGAATTTTTTTAGGGAG+TGG + chr2.3:32066821-32066840 MS.gene60883:CDS 35.0%
!!! GTCAATTGGTTTTTCTCCAA+TGG + chr2.3:32066160-32066179 MS.gene60883:CDS 35.0%
AAATGGTACTAACCTTCCTC+AGG + chr2.3:32066234-32066253 MS.gene60883:CDS 40.0%
AAGCTTGAATGTGTGGTCAA+TGG - chr2.3:32065315-32065334 None:intergenic 40.0%
AATAGAGGAACTAAAGCTCC+CGG + chr2.3:32065953-32065972 MS.gene60883:CDS 40.0%
ACACAAACTTCTTCGAGTGA+AGG + chr2.3:32065341-32065360 MS.gene60883:CDS 40.0%
ACATGAAATTGATGGAGGGT+TGG - chr2.3:32066020-32066039 None:intergenic 40.0%
ACTAGTGAGTAATCAACAGG+TGG - chr2.3:32065707-32065726 None:intergenic 40.0%
ACTTACCTTCCTCTGTCAAT+TGG + chr2.3:32066146-32066165 MS.gene60883:CDS 40.0%
AGCAATGTGAGTCTTCTACA+TGG + chr2.3:32065885-32065904 MS.gene60883:CDS 40.0%
AGCTTGAATGTGTGGTCAAT+GGG - chr2.3:32065314-32065333 None:intergenic 40.0%
ATAGGAATGGAGAGTAAGAG+TGG - chr2.3:32066105-32066124 None:intergenic 40.0%
CAATAGGCACCATCATTGTT+AGG - chr2.3:32066262-32066281 None:intergenic 40.0%
CATGTGAAACCAATGTTTGG+AGG + chr2.3:32066358-32066377 MS.gene60883:CDS 40.0%
CATTCACTGATATTGCCATG+TGG + chr2.3:32066383-32066402 MS.gene60883:CDS 40.0%
CCTGTTGCAATAGCACAAAA+TGG + chr2.3:32066217-32066236 MS.gene60883:CDS 40.0%
CTACTAGGGAAAAATGGAGT+AGG + chr2.3:32066697-32066716 MS.gene60883:CDS 40.0%
CTCAACATAATGGTGGTTCA+TGG + chr2.3:32066554-32066573 MS.gene60883:CDS 40.0%
CTGAAGTTAAAGAGCCAGAA+TGG + chr2.3:32066800-32066819 MS.gene60883:CDS 40.0%
CTGACACACATGACTTTGTT+GGG - chr2.3:32065851-32065870 None:intergenic 40.0%
CTTGTATAGTAACGCTCCAT+TGG - chr2.3:32066179-32066198 None:intergenic 40.0%
CTTTCCCAGGTCCATTAAAA+GGG - chr2.3:32066417-32066436 None:intergenic 40.0%
GAGTCTTCTACATGGATTTG+GGG + chr2.3:32065893-32065912 MS.gene60883:CDS 40.0%
GCAAACACAGTCATGAATCT+AGG + chr2.3:32065467-32065486 MS.gene60883:CDS 40.0%
GGAGAAAAACCAATTGACAG+AGG - chr2.3:32066158-32066177 None:intergenic 40.0%
GGGAAAATAGGTGAACATGT+TGG + chr2.3:32066466-32066485 MS.gene60883:CDS 40.0%
GTAACTTGGATGGTCAGTTA+TGG + chr2.3:32066518-32066537 MS.gene60883:CDS 40.0%
GTCCAAAGGAAAAGGGTAAT+TGG + chr2.3:32066980-32066999 MS.gene60883:CDS 40.0%
GTGAATGTTCCTCCAAACAT+TGG - chr2.3:32066370-32066389 None:intergenic 40.0%
GTGAGTCTTCTACATGGATT+TGG + chr2.3:32065891-32065910 MS.gene60883:CDS 40.0%
TAAACCACAGGTCTTTGTGT+CGG - chr2.3:32066631-32066650 None:intergenic 40.0%
TATTTGCATCGTCAACAGGT+AGG - chr2.3:32066291-32066310 None:intergenic 40.0%
TCTGACACACATGACTTTGT+TGG - chr2.3:32065852-32065871 None:intergenic 40.0%
TGACACACATGACTTTGTTG+GGG - chr2.3:32065850-32065869 None:intergenic 40.0%
! ATTGGGAGCATGTGACATTA+AGG + chr2.3:32066491-32066510 MS.gene60883:CDS 40.0%
! CCCAACAACAAACCTCTTTT+TGG + chr2.3:32065629-32065648 MS.gene60883:CDS 40.0%
! CTAACAATGATGGTGCCTAT+TGG + chr2.3:32066260-32066279 MS.gene60883:CDS 40.0%
! GGAGCGTTACTATACAAGAA+AGG + chr2.3:32066181-32066200 MS.gene60883:CDS 40.0%
! TTGGGAGCATGTGACATTAA+GGG + chr2.3:32066492-32066511 MS.gene60883:CDS 40.0%
!! AAAGAGGTTTGTTGTTGGGT+TGG - chr2.3:32065628-32065647 None:intergenic 40.0%
!! AACTCTACTTTTGCTTTCCC+AGG - chr2.3:32066430-32066449 None:intergenic 40.0%
!! AGGTGAACATGTTGGTGATT+GGG + chr2.3:32066474-32066493 MS.gene60883:CDS 40.0%
!! CCATTTTGTGCTATTGCAAC+AGG - chr2.3:32066220-32066239 None:intergenic 40.0%
!! GGTTTACCAAAAGAAGTGCT+GGG + chr2.3:32066940-32066959 MS.gene60883:CDS 40.0%
!! TAGGTGAACATGTTGGTGAT+TGG + chr2.3:32066473-32066492 MS.gene60883:CDS 40.0%
!! TCTACCCTTTTAATGGACCT+GGG + chr2.3:32066410-32066429 MS.gene60883:CDS 40.0%
!! TTCTACCCTTTTAATGGACC+TGG + chr2.3:32066409-32066428 MS.gene60883:CDS 40.0%
AACAGGTAGGTCAAGCCAAT+AGG - chr2.3:32066278-32066297 None:intergenic 45.0%
AAGACTCACATTGCTCTGTG+AGG - chr2.3:32065880-32065899 None:intergenic 45.0%
ACCAACAGGTCCAAAGGAAA+AGG + chr2.3:32066972-32066991 MS.gene60883:CDS 45.0%
ATTGAACACTGCATCCGTCA+CGG + chr2.3:32065727-32065746 MS.gene60883:CDS 45.0%
CATGACTGTGTTTGCGAAAC+TGG - chr2.3:32065462-32065481 None:intergenic 45.0%
CATGCATCATATCCACATGC+TGG + chr2.3:32066667-32066686 MS.gene60883:CDS 45.0%
CATTGTTAGGATCCTGAGGA+AGG - chr2.3:32066249-32066268 None:intergenic 45.0%
CCAACAGGTCCAAAGGAAAA+GGG + chr2.3:32066973-32066992 MS.gene60883:CDS 45.0%
CCATCATTGTTAGGATCCTG+AGG - chr2.3:32066253-32066272 None:intergenic 45.0%
CCTCAGGATCCTAACAATGA+TGG + chr2.3:32066250-32066269 MS.gene60883:CDS 45.0%
CTTGTGTTGTGGTGACAACA+AGG - chr2.3:32065817-32065836 None:intergenic 45.0%
GACACACATGACTTTGTTGG+GGG - chr2.3:32065849-32065868 None:intergenic 45.0%
GACCTGTGGTTTATGCTTCT+CGG + chr2.3:32066638-32066657 MS.gene60883:CDS 45.0%
GCTTGAATGTGTGGTCAATG+GGG - chr2.3:32065313-32065332 None:intergenic 45.0%
GCTTTCCCAGGTCCATTAAA+AGG - chr2.3:32066418-32066437 None:intergenic 45.0%
GGAAGGTTTGTCTTGTGTTG+TGG - chr2.3:32065828-32065847 None:intergenic 45.0%
GGTACCTTCGTTGCTCAAAA+TGG + chr2.3:32065986-32066005 MS.gene60883:CDS 45.0%
TATCCATAAGTCAGTCCCGT+TGG - chr2.3:32065584-32065603 None:intergenic 45.0%
TTGGCTGTAGCTTCCTAACA+TGG - chr2.3:32065609-32065628 None:intergenic 45.0%
! CTCACCATTTTGAGCAACGA+AGG - chr2.3:32065993-32066012 None:intergenic 45.0%
! GGGTTTACCAAAAGAAGTGC+TGG + chr2.3:32066939-32066958 MS.gene60883:CDS 45.0%
! TTTTCCGACACAAAGACCTG+TGG + chr2.3:32066624-32066643 MS.gene60883:CDS 45.0%
!! ATGCTGGCCTTCATCTACTA+GGG + chr2.3:32066683-32066702 MS.gene60883:CDS 45.0%
AGTAGATGAAGGCCAGCATG+TGG - chr2.3:32066682-32066701 None:intergenic 50.0%
CACATGACTTTGTTGGGGGA+AGG - chr2.3:32065845-32065864 None:intergenic 50.0%
CGCCTCAGTGTATGAACCAA+CGG + chr2.3:32065565-32065584 MS.gene60883:CDS 50.0%
GCCTCAGTGTATGAACCAAC+GGG + chr2.3:32065566-32065585 MS.gene60883:CDS 50.0%
GGAGTCTTGATCAACCGTGA+CGG - chr2.3:32065744-32065763 None:intergenic 50.0%
GTGGTTTATGCTTCTCGGCA+TGG + chr2.3:32066643-32066662 MS.gene60883:CDS 50.0%
TGACAACAAGGCCTACAGCA+TGG - chr2.3:32065805-32065824 None:intergenic 50.0%
TGGCTACCAATAGCACCTGA+TGG + chr2.3:32065776-32065795 MS.gene60883:CDS 50.0%
! CCCTTTTCCTTTGGACCTGT+TGG - chr2.3:32066976-32066995 None:intergenic 50.0%
! GAACCAACGGGACTGACTTA+TGG + chr2.3:32065578-32065597 MS.gene60883:CDS 50.0%
! TCCTCTCCCAGCACTTCTTT+TGG - chr2.3:32066949-32066968 None:intergenic 50.0%
! TGCCGAGAAGCATAAACCAC+AGG - chr2.3:32066643-32066662 None:intergenic 50.0%
! TGGTAGCCATCAGGTGCTAT+TGG - chr2.3:32065785-32065804 None:intergenic 50.0%
!! AAAGAAGTGCTGGGAGAGGA+AGG + chr2.3:32066949-32066968 MS.gene60883:CDS 50.0%
!! ACCAAAAGAAGTGCTGGGAG+AGG + chr2.3:32066945-32066964 MS.gene60883:CDS 50.0%
!! CATGCTGGCCTTCATCTACT+AGG + chr2.3:32066682-32066701 MS.gene60883:CDS 50.0%
!! TCCCGTTGGTTCATACACTG+AGG - chr2.3:32065570-32065589 None:intergenic 50.0%
CCTACAGCATGGTAGCCATC+AGG - chr2.3:32065794-32065813 None:intergenic 55.0%
CCTGATGGCTACCATGCTGT+AGG + chr2.3:32065791-32065810 MS.gene60883:CDS 55.0%
GGAAGGACCAACAGGTCCAA+AGG + chr2.3:32066966-32066985 MS.gene60883:CDS 55.0%
! AAAGTTTGGGGCGCCTACGA+AGG + chr2.3:32065524-32065543 MS.gene60883:CDS 55.0%
! AAGGTACCAACGCGAACACC+GGG - chr2.3:32065974-32065993 None:intergenic 55.0%
!! GAAGGTACCAACGCGAACAC+CGG - chr2.3:32065975-32065994 None:intergenic 55.0%
AAAGCTCCCGGTGTTCGCGT+TGG + chr2.3:32065965-32065984 MS.gene60883:CDS 60.0%
ATCGTCCGGTCCACCTTCGT+AGG - chr2.3:32065540-32065559 None:intergenic 60.0%
CTGGGAGAGGAAGGACCAAC+AGG + chr2.3:32066958-32066977 MS.gene60883:CDS 60.0%
GAAGGTGGACCGGACGATCA+AGG + chr2.3:32065542-32065561 MS.gene60883:CDS 60.0%
TGTGGTCAATGGGGCGAGAG+CGG - chr2.3:32065304-32065323 None:intergenic 60.0%
! ACTGAGGCGCCTTGATCGTC+CGG - chr2.3:32065554-32065573 None:intergenic 60.0%
GTGGTCAATGGGGCGAGAGC+GGG - chr2.3:32065303-32065322 None:intergenic 65.0%
! GTTTGGGGCGCCTACGAAGG+TGG + chr2.3:32065527-32065546 MS.gene60883:CDS 65.0%
GGGCGCCTACGAAGGTGGAC+CGG + chr2.3:32065532-32065551 MS.gene60883:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 32065248 32067020 32065248 ID=MS.gene60883
chr2.3 mRNA 32065248 32067020 32065248 ID=MS.gene60883.t1;Parent=MS.gene60883
chr2.3 exon 32065248 32067020 32065248 ID=MS.gene60883.t1.exon1;Parent=MS.gene60883.t1
chr2.3 CDS 32065248 32067020 32065248 ID=cds.MS.gene60883.t1;Parent=MS.gene60883.t1
Gene Sequence

>MS.gene60883

ATGTTTTCATTTCCAGAAAATAAGAATGTCTTCAAGAAAAAGAGACAGGTATCCCGCTCTCGCCCCATTGACCACACATTCAAGCTTCCTATTACACAAACTTCTTCGAGTGAAGGTATTGTTTATGCGATTTCAATTTTCTGTCCTCTTGTAGTAGATTATAGTGAATGCAGGCTAACTGTAACAAGTGTTGAATTGCAACATACAGGTACCAGTTTCGCAAACACAGTCATGAATCTAGGTGAGCTGCATGTGATGCAAGCATCAACATTCAGCAAAGTTTGGGGCGCCTACGAAGGTGGACCGGACGATCAAGGCGCCTCAGTGTATGAACCAACGGGACTGACTTATGGATACTCCATGTTAGGAAGCTACAGCCAACCCAACAACAAACCTCTTTTTGGATATGTTCTTGTAGCAAAGGATATTTCAGGAAAGAGTAATGGCACTTTAAAGCCACCTGTTGATTACTCACTAGTATTGAACACTGCATCCGTCACGGTTGATCAAGACTCCCCTTTGTATATTTGGCTACCAATAGCACCTGATGGCTACCATGCTGTAGGCCTTGTTGTCACCACAACACAAGACAAACCTTCCCCCAACAAAGTCATGTGTGTCAGATCAGACCTCACAGAGCAATGTGAGTCTTCTACATGGATTTGGGGATCAAACGACATAAATTTCTATGATGTTAGACCAATCAATAGAGGAACTAAAGCTCCCGGTGTTCGCGTTGGTACCTTCGTTGCTCAAAATGGTGAGAATACCAACCCTCCATCAATTTCATGTTTGAAAAATCTCAATGAAATTTCACAAATCATGCCTAATCTAACACAAATTGAGACAATACTCCACTCTTACTCTCCATTCCTATATTTGCATCCTGATGAAGAATACTTACCTTCCTCTGTCAATTGGTTTTTCTCCAATGGAGCGTTACTATACAAGAAAGGTGAAGAATCAAATCCTGTTGCAATAGCACAAAATGGTACTAACCTTCCTCAGGATCCTAACAATGATGGTGCCTATTGGCTTGACCTACCTGTTGACGATGCAAATAAAGAAAGGGTCAAGCAAGGTAATTTACAAAGTGCAGAATCTTATGTACATGTGAAACCAATGTTTGGAGGAACATTCACTGATATTGCCATGTGGATTTTCTACCCTTTTAATGGACCTGGGAAAGCAAAAGTAGAGTTCATAAATTTGAAGTTAGGGAAAATAGGTGAACATGTTGGTGATTGGGAGCATGTGACATTAAGGGTAAGTAACTTGGATGGTCAGTTATGGCATGTCTATTTCTCTCAACATAATGGTGGTTCATGGCTTGATGCATCTCAACTTGAGTTTCAAACTGATAATAGCAGTTTTGATTTTCCGACACAAAGACCTGTGGTTTATGCTTCTCGGCATGGTCATGCATCATATCCACATGCTGGCCTTCATCTACTAGGGAAAAATGGAGTAGGTGCAAGAGATGATACTGATAAAGGTAGCAATGTTATGGATATGGGAAAATATGTATTGGTTTCTGCAGAGTATTTGGAGTCTGAAGTTAAAGAGCCAGAATGGTTGAATTTTTTTAGGGAGTGGGGTCCACATATTGACTATAGTCTAGATGATGAGTTGAAGAATGTTGAGAAGTTATTGCCTGGGAAATTAAAAGATGTTTTTGAAAAAATTATTATGGGTTTACCAAAAGAAGTGCTGGGAGAGGAAGGACCAACAGGTCCAAAGGAAAAGGGTAATTGGAATGGTGATGAATTTTGA

Protein sequence

>MS.gene60883.t1

MFSFPENKNVFKKKRQVSRSRPIDHTFKLPITQTSSSEGIVYAISIFCPLVVDYSECRLTVTSVELQHTGTSFANTVMNLGELHVMQASTFSKVWGAYEGGPDDQGASVYEPTGLTYGYSMLGSYSQPNNKPLFGYVLVAKDISGKSNGTLKPPVDYSLVLNTASVTVDQDSPLYIWLPIAPDGYHAVGLVVTTTQDKPSPNKVMCVRSDLTEQCESSTWIWGSNDINFYDVRPINRGTKAPGVRVGTFVAQNGENTNPPSISCLKNLNEISQIMPNLTQIETILHSYSPFLYLHPDEEYLPSSVNWFFSNGALLYKKGEESNPVAIAQNGTNLPQDPNNDGAYWLDLPVDDANKERVKQGNLQSAESYVHVKPMFGGTFTDIAMWIFYPFNGPGKAKVEFINLKLGKIGEHVGDWEHVTLRVSNLDGQLWHVYFSQHNGGSWLDASQLEFQTDNSSFDFPTQRPVVYASRHGHASYPHAGLHLLGKNGVGARDDTDKGSNVMDMGKYVLVSAEYLESEVKEPEWLNFFREWGPHIDYSLDDELKNVEKLLPGKLKDVFEKIIMGLPKEVLGEEGPTGPKEKGNWNGDEF