Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60883.t1 | RHN74337.1 | 92 | 587 | 44 | 2 | 6 | 589 | 565 | 1151 | 0.00E+00 | 1127.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60883.t1 | Q06466 | 25.9 | 301 | 157 | 15 | 280 | 533 | 77 | 358 | 8.3e-07 | 57.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60883.t1 | A0A396JGX9 | 92.0 | 587 | 44 | 2 | 6 | 589 | 565 | 1151 | 0.0e+00 | 1127.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene043858 | MS.gene60883 | PPI |
MS.gene60883 | MS.gene043855 | PPI |
MS.gene60883 | MS.gene000191 | PPI |
MS.gene60883 | MS.gene60886 | PPI |
MS.gene60883 | MS.gene012606 | PPI |
MS.gene60883 | MS.gene60889 | PPI |
MS.gene60883 | MS.gene60887 | PPI |
MS.gene60883 | MS.gene000190 | PPI |
MS.gene60883 | MS.gene005097 | PPI |
MS.gene60883 | MS.gene33537 | PPI |
MS.gene60883 | MS.gene52609 | PPI |
MS.gene60883 | MS.gene60884 | PPI |
MS.gene60883 | MS.gene60888 | PPI |
MS.gene60883 | MS.gene005092 | PPI |
MS.gene60883 | MS.gene042258 | PPI |
MS.gene60883 | MS.gene042257 | PPI |
MS.gene60883 | MS.gene43969 | PPI |
MS.gene60883 | MS.gene043859 | PPI |
MS.gene061203 | MS.gene60883 | PPI |
MS.gene60883 | MS.gene043858 | PPI |
MS.gene60883 | MS.gene061203 | PPI |
MS.gene60886 | MS.gene60883 | PPI |
MS.gene60883 | MS.gene036431 | PPI |
MS.gene60883 | MS.gene60881 | PPI |
MS.gene60883 | MS.gene000193 | PPI |
MS.gene60883 | MS.gene036433 | PPI |
MS.gene60883 | MS.gene000192 | PPI |
MS.gene60883 | MS.gene005095 | PPI |
MS.gene60883 | MS.gene52616 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60883.t1 | MTR_2g062370 | 87.905 | 587 | 37 | 3 | 6 | 589 | 34 | 589 | 0.0 | 1038 |
MS.gene60883.t1 | MTR_2g062380 | 84.240 | 533 | 84 | 0 | 58 | 590 | 28 | 560 | 0.0 | 945 |
MS.gene60883.t1 | MTR_2g062410 | 76.441 | 590 | 103 | 3 | 1 | 589 | 31 | 585 | 0.0 | 916 |
MS.gene60883.t1 | MTR_2g062430 | 68.900 | 582 | 138 | 5 | 9 | 589 | 13 | 552 | 0.0 | 827 |
MS.gene60883.t1 | MTR_4g131710 | 68.803 | 593 | 149 | 4 | 1 | 590 | 27 | 586 | 0.0 | 818 |
MS.gene60883.t1 | MTR_2g067640 | 56.309 | 531 | 201 | 8 | 70 | 590 | 32 | 541 | 0.0 | 601 |
MS.gene60883.t1 | MTR_2g062340 | 51.789 | 531 | 199 | 10 | 70 | 589 | 32 | 516 | 1.04e-178 | 515 |
MS.gene60883.t1 | MTR_1g080370 | 45.911 | 538 | 261 | 9 | 70 | 590 | 35 | 559 | 2.59e-163 | 478 |
MS.gene60883.t1 | MTR_1g080410 | 45.911 | 538 | 261 | 9 | 70 | 590 | 35 | 559 | 2.59e-163 | 478 |
MS.gene60883.t1 | MTR_5g007860 | 43.693 | 547 | 269 | 9 | 70 | 589 | 71 | 605 | 1.31e-154 | 457 |
MS.gene60883.t1 | MTR_4g077620 | 44.712 | 539 | 268 | 11 | 70 | 589 | 40 | 567 | 8.71e-149 | 441 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60883.t1 | AT2G44260 | 53.480 | 589 | 258 | 7 | 3 | 589 | 8 | 582 | 0.0 | 634 |
MS.gene60883.t1 | AT2G44260 | 57.854 | 522 | 208 | 5 | 70 | 589 | 41 | 552 | 0.0 | 623 |
MS.gene60883.t1 | AT2G44230 | 53.143 | 525 | 228 | 6 | 69 | 589 | 31 | 541 | 0.0 | 566 |
MS.gene60883.t1 | AT3G01870 | 48.674 | 528 | 248 | 7 | 70 | 589 | 71 | 583 | 2.36e-176 | 512 |
MS.gene60883.t1 | AT3G01880 | 48.393 | 529 | 250 | 8 | 70 | 589 | 75 | 589 | 7.39e-173 | 503 |
MS.gene60883.t1 | AT5G18490 | 44.944 | 534 | 263 | 9 | 70 | 590 | 37 | 552 | 2.92e-159 | 467 |
MS.gene60883.t1 | AT3G04350 | 44.015 | 543 | 270 | 10 | 69 | 590 | 15 | 544 | 1.41e-153 | 452 |
MS.gene60883.t1 | AT3G04350 | 44.096 | 542 | 269 | 10 | 70 | 590 | 38 | 566 | 3.96e-153 | 452 |
MS.gene60883.t1 | AT5G43950 | 41.899 | 537 | 289 | 8 | 69 | 589 | 35 | 564 | 1.04e-144 | 430 |
MS.gene60883.t1 | AT1G04090 | 41.392 | 546 | 283 | 12 | 70 | 589 | 36 | 570 | 1.36e-141 | 422 |
Find 138 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGACTCCCCTTTGTATATT+TGG | 0.124214 | 2.3:+32065756 | MS.gene60883:CDS |
GCTTTCCCAGGTCCATTAAA+AGG | 0.194984 | 2.3:-32066415 | None:intergenic |
ATTGGTTTCTGCAGAGTATT+TGG | 0.229797 | 2.3:+32066774 | MS.gene60883:CDS |
CTTGTAGCAAAGGATATTTC+AGG | 0.255851 | 2.3:+32065659 | MS.gene60883:CDS |
AGGTAGCAATGTTATGGATA+TGG | 0.258056 | 2.3:+32066741 | MS.gene60883:CDS |
CTCGAAGAAGTTTGTGTAAT+AGG | 0.259429 | 2.3:-32065335 | None:intergenic |
GTGAGTCTTCTACATGGATT+TGG | 0.274745 | 2.3:+32065891 | MS.gene60883:CDS |
CATCAACATTCAGCAAAGTT+TGG | 0.275579 | 2.3:+32065510 | MS.gene60883:CDS |
TCCTCTCCCAGCACTTCTTT+TGG | 0.282938 | 2.3:-32066946 | None:intergenic |
ATTGGGAGCATGTGACATTA+AGG | 0.285039 | 2.3:+32066491 | MS.gene60883:CDS |
GTCCAAAGGAAAAGGGTAAT+TGG | 0.292083 | 2.3:+32066980 | MS.gene60883:CDS |
CATGACTGTGTTTGCGAAAC+TGG | 0.292140 | 2.3:-32065459 | None:intergenic |
AATTTGAAGTTAGGGAAAAT+AGG | 0.310027 | 2.3:+32066454 | MS.gene60883:CDS |
ATCAACATTCAGCAAAGTTT+GGG | 0.318101 | 2.3:+32065511 | MS.gene60883:CDS |
GGTACCTTCGTTGCTCAAAA+TGG | 0.332082 | 2.3:+32065986 | MS.gene60883:CDS |
GAGTTCATAAATTTGAAGTT+AGG | 0.341852 | 2.3:+32066445 | MS.gene60883:CDS |
TGAGTCTTCTACATGGATTT+GGG | 0.342802 | 2.3:+32065892 | MS.gene60883:CDS |
GCTTTAGTTCCTCTATTGAT+TGG | 0.347877 | 2.3:-32065947 | None:intergenic |
GAACCAACGGGACTGACTTA+TGG | 0.352846 | 2.3:+32065578 | MS.gene60883:CDS |
GACCTGTGGTTTATGCTTCT+CGG | 0.360096 | 2.3:+32066638 | MS.gene60883:CDS |
CTTCATCAGGATGCAAATAT+AGG | 0.366519 | 2.3:-32066120 | None:intergenic |
CATGCTGGCCTTCATCTACT+AGG | 0.369862 | 2.3:+32066682 | MS.gene60883:CDS |
CTGACACACATGACTTTGTT+GGG | 0.371564 | 2.3:-32065848 | None:intergenic |
CTCAACATAATGGTGGTTCA+TGG | 0.380091 | 2.3:+32066554 | MS.gene60883:CDS |
GTCTATTTCTCTCAACATAA+TGG | 0.382864 | 2.3:+32066544 | MS.gene60883:CDS |
TCTGACACACATGACTTTGT+TGG | 0.395634 | 2.3:-32065849 | None:intergenic |
CTAACAATGATGGTGCCTAT+TGG | 0.409794 | 2.3:+32066260 | MS.gene60883:CDS |
CAATAGGCACCATCATTGTT+AGG | 0.412763 | 2.3:-32066259 | None:intergenic |
TGATAAAGGTAGCAATGTTA+TGG | 0.414830 | 2.3:+32066735 | MS.gene60883:CDS |
AGTTCATAAATTTGAAGTTA+GGG | 0.416307 | 2.3:+32066446 | MS.gene60883:CDS |
ACTTACCTTCCTCTGTCAAT+TGG | 0.417119 | 2.3:+32066146 | MS.gene60883:CDS |
ACTTATGGATACTCCATGTT+AGG | 0.419517 | 2.3:+32065593 | MS.gene60883:CDS |
GTCTCAATTTGTGTTAGATT+AGG | 0.420473 | 2.3:-32066073 | None:intergenic |
AGCTTGAATGTGTGGTCAAT+GGG | 0.428759 | 2.3:-32065311 | None:intergenic |
GCAAGAGATGATACTGATAA+AGG | 0.429248 | 2.3:+32066721 | MS.gene60883:CDS |
TCTTTATTTGCATCGTCAAC+AGG | 0.432547 | 2.3:-32066292 | None:intergenic |
GGATATGGGAAAATATGTAT+TGG | 0.435630 | 2.3:+32066756 | MS.gene60883:CDS |
ACCAACAGGTCCAAAGGAAA+AGG | 0.437204 | 2.3:+32066972 | MS.gene60883:CDS |
CCTGTTGCAATAGCACAAAA+TGG | 0.439644 | 2.3:+32066217 | MS.gene60883:CDS |
GAAGGTAAGTATTCTTCATC+AGG | 0.444599 | 2.3:-32066133 | None:intergenic |
GGGTTTACCAAAAGAAGTGC+TGG | 0.449038 | 2.3:+32066939 | MS.gene60883:CDS |
GGTAGCAATGTTATGGATAT+GGG | 0.449769 | 2.3:+32066742 | MS.gene60883:CDS |
AATGTTGAGAAGTTATTGCC+TGG | 0.454803 | 2.3:+32066883 | MS.gene60883:CDS |
GTACATGTGAAACCAATGTT+TGG | 0.455920 | 2.3:+32066355 | MS.gene60883:CDS |
AATACTAGTGAGTAATCAAC+AGG | 0.461578 | 2.3:-32065707 | None:intergenic |
CTTGTATAGTAACGCTCCAT+TGG | 0.467093 | 2.3:-32066176 | None:intergenic |
TAGGTGAACATGTTGGTGAT+TGG | 0.478019 | 2.3:+32066473 | MS.gene60883:CDS |
GCAAACACAGTCATGAATCT+AGG | 0.478598 | 2.3:+32065467 | MS.gene60883:CDS |
TGGTAGCCATCAGGTGCTAT+TGG | 0.479434 | 2.3:-32065782 | None:intergenic |
CTGGGAGAGGAAGGACCAAC+AGG | 0.482050 | 2.3:+32066958 | MS.gene60883:CDS |
GGAAGGTTTGTCTTGTGTTG+TGG | 0.484281 | 2.3:-32065825 | None:intergenic |
GTGGTTTATGCTTCTCGGCA+TGG | 0.484909 | 2.3:+32066643 | MS.gene60883:CDS |
ACTGAGGCGCCTTGATCGTC+CGG | 0.485272 | 2.3:-32065551 | None:intergenic |
TTGGTAGCCAAATATACAAA+GGG | 0.494599 | 2.3:-32065763 | None:intergenic |
ATAGGAATGGAGAGTAAGAG+TGG | 0.495814 | 2.3:-32066102 | None:intergenic |
TTGACGATGCAAATAAAGAA+AGG | 0.500336 | 2.3:+32066296 | MS.gene60883:CDS |
CTTTCCCAGGTCCATTAAAA+GGG | 0.501041 | 2.3:-32066414 | None:intergenic |
GTGGTCAATGGGGCGAGAGC+GGG | 0.505037 | 2.3:-32065300 | None:intergenic |
GACATTAAGGGTAAGTAACT+TGG | 0.505898 | 2.3:+32066504 | MS.gene60883:CDS |
TGGATATGTTCTTGTAGCAA+AGG | 0.506215 | 2.3:+32065649 | MS.gene60883:CDS |
TTGGCTGTAGCTTCCTAACA+TGG | 0.507947 | 2.3:-32065606 | None:intergenic |
AACAGGTAGGTCAAGCCAAT+AGG | 0.509711 | 2.3:-32066275 | None:intergenic |
AGGTGAACATGTTGGTGATT+GGG | 0.511142 | 2.3:+32066474 | MS.gene60883:CDS |
AGTGTTGAATTGCAACATAC+AGG | 0.515646 | 2.3:+32065434 | MS.gene60883:CDS |
GAAGGTACCAACGCGAACAC+CGG | 0.518336 | 2.3:-32065972 | None:intergenic |
GCCTCAGTGTATGAACCAAC+GGG | 0.521228 | 2.3:+32065566 | MS.gene60883:CDS |
GAAGGTGGACCGGACGATCA+AGG | 0.523730 | 2.3:+32065542 | MS.gene60883:CDS |
AAGCTTGAATGTGTGGTCAA+TGG | 0.525417 | 2.3:-32065312 | None:intergenic |
TTGGGAGCATGTGACATTAA+GGG | 0.526297 | 2.3:+32066492 | MS.gene60883:CDS |
CCTCAGGATCCTAACAATGA+TGG | 0.528215 | 2.3:+32066250 | MS.gene60883:CDS |
CCTACAGCATGGTAGCCATC+AGG | 0.530924 | 2.3:-32065791 | None:intergenic |
GTGAATGTTCCTCCAAACAT+TGG | 0.533393 | 2.3:-32066367 | None:intergenic |
CCAACAGGTCCAAAGGAAAA+GGG | 0.535094 | 2.3:+32066973 | MS.gene60883:CDS |
AAGGTACCAACGCGAACACC+GGG | 0.535734 | 2.3:-32065971 | None:intergenic |
TTCAAACATGAAATTGATGG+AGG | 0.536359 | 2.3:-32066022 | None:intergenic |
ACATGAAATTGATGGAGGGT+TGG | 0.537969 | 2.3:-32066017 | None:intergenic |
CTGAAGTTAAAGAGCCAGAA+TGG | 0.539770 | 2.3:+32066800 | MS.gene60883:CDS |
AAAGAGGTTTGTTGTTGGGT+TGG | 0.542937 | 2.3:-32065625 | None:intergenic |
GTAACTTGGATGGTCAGTTA+TGG | 0.544808 | 2.3:+32066518 | MS.gene60883:CDS |
AAATGGTACTAACCTTCCTC+AGG | 0.545862 | 2.3:+32066234 | MS.gene60883:CDS |
GGAAGGACCAACAGGTCCAA+AGG | 0.546506 | 2.3:+32066966 | MS.gene60883:CDS |
TCACTATAATCTACTACAAG+AGG | 0.551185 | 2.3:-32065392 | None:intergenic |
TCTAGACTATAGTCAATATG+TGG | 0.557808 | 2.3:-32066847 | None:intergenic |
AAAGAAGTGCTGGGAGAGGA+AGG | 0.559112 | 2.3:+32066949 | MS.gene60883:CDS |
ATGTTGAGAAGTTATTGCCT+GGG | 0.560794 | 2.3:+32066884 | MS.gene60883:CDS |
CGCCTCAGTGTATGAACCAA+CGG | 0.561230 | 2.3:+32065565 | MS.gene60883:CDS |
ATGCTGGCCTTCATCTACTA+GGG | 0.562857 | 2.3:+32066683 | MS.gene60883:CDS |
TGACGATGCAAATAAAGAAA+GGG | 0.564676 | 2.3:+32066297 | MS.gene60883:CDS |
TGTGGTCAATGGGGCGAGAG+CGG | 0.565396 | 2.3:-32065301 | None:intergenic |
AAGGAAAAGGGTAATTGGAA+TGG | 0.567477 | 2.3:+32066985 | MS.gene60883:CDS |
TAGTAGATTATAGTGAATGC+AGG | 0.567559 | 2.3:+32065399 | MS.gene60883:CDS |
AATAGAGGAACTAAAGCTCC+CGG | 0.568897 | 2.3:+32065953 | MS.gene60883:CDS |
CATTGTTAGGATCCTGAGGA+AGG | 0.572703 | 2.3:-32066246 | None:intergenic |
ACACAAACTTCTTCGAGTGA+AGG | 0.574944 | 2.3:+32065341 | MS.gene60883:CDS |
TCAAACATGAAATTGATGGA+GGG | 0.575731 | 2.3:-32066021 | None:intergenic |
CATGCATCATATCCACATGC+TGG | 0.576287 | 2.3:+32066667 | MS.gene60883:CDS |
GTTTGGGGCGCCTACGAAGG+TGG | 0.577121 | 2.3:+32065527 | MS.gene60883:CDS |
CTTGTGTTGTGGTGACAACA+AGG | 0.577689 | 2.3:-32065814 | None:intergenic |
TGACACACATGACTTTGTTG+GGG | 0.578338 | 2.3:-32065847 | None:intergenic |
GATATTTCAGGAAAGAGTAA+TGG | 0.579239 | 2.3:+32065671 | MS.gene60883:CDS |
ATTGGTAGCCAAATATACAA+AGG | 0.583699 | 2.3:-32065764 | None:intergenic |
GGGCGCCTACGAAGGTGGAC+CGG | 0.583899 | 2.3:+32065532 | MS.gene60883:CDS |
TCAGGATGCAAATATAGGAA+TGG | 0.588386 | 2.3:-32066115 | None:intergenic |
ACCAAAAGAAGTGCTGGGAG+AGG | 0.590505 | 2.3:+32066945 | MS.gene60883:CDS |
GATGTTAGACCAATCAATAG+AGG | 0.591766 | 2.3:+32065938 | MS.gene60883:CDS |
ATCGTCCGGTCCACCTTCGT+AGG | 0.592536 | 2.3:-32065537 | None:intergenic |
TATTTCTCTCAACATAATGG+TGG | 0.595363 | 2.3:+32066547 | MS.gene60883:CDS |
AAAGTTTGGGGCGCCTACGA+AGG | 0.597769 | 2.3:+32065524 | MS.gene60883:CDS |
GGGAAAATAGGTGAACATGT+TGG | 0.598707 | 2.3:+32066466 | MS.gene60883:CDS |
GGAGCGTTACTATACAAGAA+AGG | 0.600026 | 2.3:+32066181 | MS.gene60883:CDS |
CCTGATGGCTACCATGCTGT+AGG | 0.611461 | 2.3:+32065791 | MS.gene60883:CDS |
CATGTGAAACCAATGTTTGG+AGG | 0.614379 | 2.3:+32066358 | MS.gene60883:CDS |
AGCAATGTGAGTCTTCTACA+TGG | 0.615710 | 2.3:+32065885 | MS.gene60883:CDS |
GAGTCTTCTACATGGATTTG+GGG | 0.615942 | 2.3:+32065893 | MS.gene60883:CDS |
TATTTGCATCGTCAACAGGT+AGG | 0.616449 | 2.3:-32066288 | None:intergenic |
GGTTTACCAAAAGAAGTGCT+GGG | 0.616870 | 2.3:+32066940 | MS.gene60883:CDS |
TATCCATAAGTCAGTCCCGT+TGG | 0.618765 | 2.3:-32065581 | None:intergenic |
CCATCATTGTTAGGATCCTG+AGG | 0.623207 | 2.3:-32066250 | None:intergenic |
TGCCGAGAAGCATAAACCAC+AGG | 0.627638 | 2.3:-32066640 | None:intergenic |
AATAAAGAAAGGGTCAAGCA+AGG | 0.630463 | 2.3:+32066307 | MS.gene60883:CDS |
TCAACATTCAGCAAAGTTTG+GGG | 0.632154 | 2.3:+32065512 | MS.gene60883:CDS |
AGTAGATGAAGGCCAGCATG+TGG | 0.633143 | 2.3:-32066679 | None:intergenic |
TGGCTACCAATAGCACCTGA+TGG | 0.636406 | 2.3:+32065776 | MS.gene60883:CDS |
AAAGCTCCCGGTGTTCGCGT+TGG | 0.645605 | 2.3:+32065965 | MS.gene60883:CDS |
ATTGAACACTGCATCCGTCA+CGG | 0.650457 | 2.3:+32065727 | MS.gene60883:CDS |
TGACAACAAGGCCTACAGCA+TGG | 0.652162 | 2.3:-32065802 | None:intergenic |
TAATAGGAAGCTTGAATGTG+TGG | 0.654960 | 2.3:-32065319 | None:intergenic |
TAAACCACAGGTCTTTGTGT+CGG | 0.656244 | 2.3:-32066628 | None:intergenic |
GACACACATGACTTTGTTGG+GGG | 0.656587 | 2.3:-32065846 | None:intergenic |
TTAAGGGTAAGTAACTTGGA+TGG | 0.663636 | 2.3:+32066508 | MS.gene60883:CDS |
GGAGTCTTGATCAACCGTGA+CGG | 0.669237 | 2.3:-32065741 | None:intergenic |
ACTAGTGAGTAATCAACAGG+TGG | 0.691530 | 2.3:-32065704 | None:intergenic |
AAGACTCACATTGCTCTGTG+AGG | 0.699723 | 2.3:-32065877 | None:intergenic |
TGGTAGCCAAATATACAAAG+GGG | 0.704831 | 2.3:-32065762 | None:intergenic |
CATTCACTGATATTGCCATG+TGG | 0.716023 | 2.3:+32066383 | MS.gene60883:CDS |
GCTTGAATGTGTGGTCAATG+GGG | 0.727664 | 2.3:-32065310 | None:intergenic |
TCCCGTTGGTTCATACACTG+AGG | 0.727884 | 2.3:-32065567 | None:intergenic |
AAAAGGGTAGAAAATCCACA+TGG | 0.732112 | 2.3:-32066398 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTTGAAAAAATTATTAT+GGG | + | chr2.3:32066919-32066938 | MS.gene60883:CDS | 10.0% |
!!! | TGTTTTTGAAAAAATTATTA+TGG | + | chr2.3:32066918-32066937 | MS.gene60883:CDS | 10.0% |
!!! | AGAATGGTTGAATTTTTTTA+GGG | + | chr2.3:32066816-32066835 | MS.gene60883:CDS | 20.0% |
!!! | AGTTCATAAATTTGAAGTTA+GGG | + | chr2.3:32066446-32066465 | MS.gene60883:CDS | 20.0% |
!!! | TTTTTCAAACATGAAATTGA+TGG | - | chr2.3:32066028-32066047 | None:intergenic | 20.0% |
! | CTAAAAAAATTCAACCATTC+TGG | - | chr2.3:32066817-32066836 | None:intergenic | 25.0% |
!! | AATTTGAAGTTAGGGAAAAT+AGG | + | chr2.3:32066454-32066473 | MS.gene60883:CDS | 25.0% |
!! | GAGTTCATAAATTTGAAGTT+AGG | + | chr2.3:32066445-32066464 | MS.gene60883:CDS | 25.0% |
!!! | AAAACATCTTTTAATTTCCC+AGG | - | chr2.3:32066904-32066923 | None:intergenic | 25.0% |
!!! | CAGAATGGTTGAATTTTTTT+AGG | + | chr2.3:32066815-32066834 | MS.gene60883:CDS | 25.0% |
!!! | TTGAAGACATTCTTATTTTC+TGG | - | chr2.3:32065263-32065282 | None:intergenic | 25.0% |
AATACTAGTGAGTAATCAAC+AGG | - | chr2.3:32065710-32065729 | None:intergenic | 30.0% | |
ACAAGAACATATCCAAAAAG+AGG | - | chr2.3:32065644-32065663 | None:intergenic | 30.0% | |
ATCAACATTCAGCAAAGTTT+GGG | + | chr2.3:32065511-32065530 | MS.gene60883:CDS | 30.0% | |
GATATTTCAGGAAAGAGTAA+TGG | + | chr2.3:32065671-32065690 | MS.gene60883:CDS | 30.0% | |
GGATATGGGAAAATATGTAT+TGG | + | chr2.3:32066756-32066775 | MS.gene60883:CDS | 30.0% | |
GTCTCAATTTGTGTTAGATT+AGG | - | chr2.3:32066076-32066095 | None:intergenic | 30.0% | |
TAGTAGATTATAGTGAATGC+AGG | + | chr2.3:32065399-32065418 | MS.gene60883:CDS | 30.0% | |
TATTTCTCTCAACATAATGG+TGG | + | chr2.3:32066547-32066566 | MS.gene60883:CDS | 30.0% | |
TCAAACATGAAATTGATGGA+GGG | - | chr2.3:32066024-32066043 | None:intergenic | 30.0% | |
TCACTATAATCTACTACAAG+AGG | - | chr2.3:32065395-32065414 | None:intergenic | 30.0% | |
TCTAGACTATAGTCAATATG+TGG | - | chr2.3:32066850-32066869 | None:intergenic | 30.0% | |
TGACGATGCAAATAAAGAAA+GGG | + | chr2.3:32066297-32066316 | MS.gene60883:CDS | 30.0% | |
TGATAAAGGTAGCAATGTTA+TGG | + | chr2.3:32066735-32066754 | MS.gene60883:CDS | 30.0% | |
TTCAAACATGAAATTGATGG+AGG | - | chr2.3:32066025-32066044 | None:intergenic | 30.0% | |
TTGACGATGCAAATAAAGAA+AGG | + | chr2.3:32066296-32066315 | MS.gene60883:CDS | 30.0% | |
! | ATTGGTAGCCAAATATACAA+AGG | - | chr2.3:32065767-32065786 | None:intergenic | 30.0% |
! | GTCTATTTCTCTCAACATAA+TGG | + | chr2.3:32066544-32066563 | MS.gene60883:CDS | 30.0% |
! | TGGATTTTCTACCCTTTTAA+TGG | + | chr2.3:32066403-32066422 | MS.gene60883:CDS | 30.0% |
! | TTGGTAGCCAAATATACAAA+GGG | - | chr2.3:32065766-32065785 | None:intergenic | 30.0% |
!!! | GTTGAATTTTTTTAGGGAGT+GGG | + | chr2.3:32066822-32066841 | MS.gene60883:CDS | 30.0% |
!!! | TTGAATTTTTTTAGGGAGTG+GGG | + | chr2.3:32066823-32066842 | MS.gene60883:CDS | 30.0% |
AAAAACCAATTGACAGAGGA+AGG | - | chr2.3:32066154-32066173 | None:intergenic | 35.0% | |
AAAAGGGTAGAAAATCCACA+TGG | - | chr2.3:32066401-32066420 | None:intergenic | 35.0% | |
AAGACTCCCCTTTGTATATT+TGG | + | chr2.3:32065756-32065775 | MS.gene60883:CDS | 35.0% | |
AAGGAAAAGGGTAATTGGAA+TGG | + | chr2.3:32066985-32067004 | MS.gene60883:CDS | 35.0% | |
AATAAAGAAAGGGTCAAGCA+AGG | + | chr2.3:32066307-32066326 | MS.gene60883:CDS | 35.0% | |
AATGTTGAGAAGTTATTGCC+TGG | + | chr2.3:32066883-32066902 | MS.gene60883:CDS | 35.0% | |
ACTTATGGATACTCCATGTT+AGG | + | chr2.3:32065593-32065612 | MS.gene60883:CDS | 35.0% | |
AGGTAGCAATGTTATGGATA+TGG | + | chr2.3:32066741-32066760 | MS.gene60883:CDS | 35.0% | |
ATGTTGAGAAGTTATTGCCT+GGG | + | chr2.3:32066884-32066903 | MS.gene60883:CDS | 35.0% | |
CATCAACATTCAGCAAAGTT+TGG | + | chr2.3:32065510-32065529 | MS.gene60883:CDS | 35.0% | |
CTCGAAGAAGTTTGTGTAAT+AGG | - | chr2.3:32065338-32065357 | None:intergenic | 35.0% | |
CTTCATCAGGATGCAAATAT+AGG | - | chr2.3:32066123-32066142 | None:intergenic | 35.0% | |
CTTCATCTACTAGGGAAAAA+TGG | + | chr2.3:32066691-32066710 | MS.gene60883:CDS | 35.0% | |
CTTGTAGCAAAGGATATTTC+AGG | + | chr2.3:32065659-32065678 | MS.gene60883:CDS | 35.0% | |
GAAGGTAAGTATTCTTCATC+AGG | - | chr2.3:32066136-32066155 | None:intergenic | 35.0% | |
GACATTAAGGGTAAGTAACT+TGG | + | chr2.3:32066504-32066523 | MS.gene60883:CDS | 35.0% | |
GATGTTAGACCAATCAATAG+AGG | + | chr2.3:32065938-32065957 | MS.gene60883:CDS | 35.0% | |
GCAAGAGATGATACTGATAA+AGG | + | chr2.3:32066721-32066740 | MS.gene60883:CDS | 35.0% | |
GGTAGCAATGTTATGGATAT+GGG | + | chr2.3:32066742-32066761 | MS.gene60883:CDS | 35.0% | |
GTACATGTGAAACCAATGTT+TGG | + | chr2.3:32066355-32066374 | MS.gene60883:CDS | 35.0% | |
TAATAGGAAGCTTGAATGTG+TGG | - | chr2.3:32065322-32065341 | None:intergenic | 35.0% | |
TCAACATTCAGCAAAGTTTG+GGG | + | chr2.3:32065512-32065531 | MS.gene60883:CDS | 35.0% | |
TCAGGATGCAAATATAGGAA+TGG | - | chr2.3:32066118-32066137 | None:intergenic | 35.0% | |
TGAGTCTTCTACATGGATTT+GGG | + | chr2.3:32065892-32065911 | MS.gene60883:CDS | 35.0% | |
TGGATATGTTCTTGTAGCAA+AGG | + | chr2.3:32065649-32065668 | MS.gene60883:CDS | 35.0% | |
TGGTAGCCAAATATACAAAG+GGG | - | chr2.3:32065765-32065784 | None:intergenic | 35.0% | |
TGTCTTCAAGAAAAAGAGAC+AGG | + | chr2.3:32065274-32065293 | MS.gene60883:CDS | 35.0% | |
TTAAGGGTAAGTAACTTGGA+TGG | + | chr2.3:32066508-32066527 | MS.gene60883:CDS | 35.0% | |
! | AGTGTTGAATTGCAACATAC+AGG | + | chr2.3:32065434-32065453 | MS.gene60883:CDS | 35.0% |
! | ATTGGTTTCTGCAGAGTATT+TGG | + | chr2.3:32066774-32066793 | MS.gene60883:CDS | 35.0% |
! | CATTTTTCCCTAGTAGATGA+AGG | - | chr2.3:32066693-32066712 | None:intergenic | 35.0% |
! | GCTTTAGTTCCTCTATTGAT+TGG | - | chr2.3:32065950-32065969 | None:intergenic | 35.0% |
! | TCTTTATTTGCATCGTCAAC+AGG | - | chr2.3:32066295-32066314 | None:intergenic | 35.0% |
! | TTCCAATTACCCTTTTCCTT+TGG | - | chr2.3:32066985-32067004 | None:intergenic | 35.0% |
!! | CCAAAAAGAGGTTTGTTGTT+GGG | - | chr2.3:32065632-32065651 | None:intergenic | 35.0% |
!! | TCCAAAAAGAGGTTTGTTGT+TGG | - | chr2.3:32065633-32065652 | None:intergenic | 35.0% |
!!! | GGTTGAATTTTTTTAGGGAG+TGG | + | chr2.3:32066821-32066840 | MS.gene60883:CDS | 35.0% |
!!! | GTCAATTGGTTTTTCTCCAA+TGG | + | chr2.3:32066160-32066179 | MS.gene60883:CDS | 35.0% |
AAATGGTACTAACCTTCCTC+AGG | + | chr2.3:32066234-32066253 | MS.gene60883:CDS | 40.0% | |
AAGCTTGAATGTGTGGTCAA+TGG | - | chr2.3:32065315-32065334 | None:intergenic | 40.0% | |
AATAGAGGAACTAAAGCTCC+CGG | + | chr2.3:32065953-32065972 | MS.gene60883:CDS | 40.0% | |
ACACAAACTTCTTCGAGTGA+AGG | + | chr2.3:32065341-32065360 | MS.gene60883:CDS | 40.0% | |
ACATGAAATTGATGGAGGGT+TGG | - | chr2.3:32066020-32066039 | None:intergenic | 40.0% | |
ACTAGTGAGTAATCAACAGG+TGG | - | chr2.3:32065707-32065726 | None:intergenic | 40.0% | |
ACTTACCTTCCTCTGTCAAT+TGG | + | chr2.3:32066146-32066165 | MS.gene60883:CDS | 40.0% | |
AGCAATGTGAGTCTTCTACA+TGG | + | chr2.3:32065885-32065904 | MS.gene60883:CDS | 40.0% | |
AGCTTGAATGTGTGGTCAAT+GGG | - | chr2.3:32065314-32065333 | None:intergenic | 40.0% | |
ATAGGAATGGAGAGTAAGAG+TGG | - | chr2.3:32066105-32066124 | None:intergenic | 40.0% | |
CAATAGGCACCATCATTGTT+AGG | - | chr2.3:32066262-32066281 | None:intergenic | 40.0% | |
CATGTGAAACCAATGTTTGG+AGG | + | chr2.3:32066358-32066377 | MS.gene60883:CDS | 40.0% | |
CATTCACTGATATTGCCATG+TGG | + | chr2.3:32066383-32066402 | MS.gene60883:CDS | 40.0% | |
CCTGTTGCAATAGCACAAAA+TGG | + | chr2.3:32066217-32066236 | MS.gene60883:CDS | 40.0% | |
CTACTAGGGAAAAATGGAGT+AGG | + | chr2.3:32066697-32066716 | MS.gene60883:CDS | 40.0% | |
CTCAACATAATGGTGGTTCA+TGG | + | chr2.3:32066554-32066573 | MS.gene60883:CDS | 40.0% | |
CTGAAGTTAAAGAGCCAGAA+TGG | + | chr2.3:32066800-32066819 | MS.gene60883:CDS | 40.0% | |
CTGACACACATGACTTTGTT+GGG | - | chr2.3:32065851-32065870 | None:intergenic | 40.0% | |
CTTGTATAGTAACGCTCCAT+TGG | - | chr2.3:32066179-32066198 | None:intergenic | 40.0% | |
CTTTCCCAGGTCCATTAAAA+GGG | - | chr2.3:32066417-32066436 | None:intergenic | 40.0% | |
GAGTCTTCTACATGGATTTG+GGG | + | chr2.3:32065893-32065912 | MS.gene60883:CDS | 40.0% | |
GCAAACACAGTCATGAATCT+AGG | + | chr2.3:32065467-32065486 | MS.gene60883:CDS | 40.0% | |
GGAGAAAAACCAATTGACAG+AGG | - | chr2.3:32066158-32066177 | None:intergenic | 40.0% | |
GGGAAAATAGGTGAACATGT+TGG | + | chr2.3:32066466-32066485 | MS.gene60883:CDS | 40.0% | |
GTAACTTGGATGGTCAGTTA+TGG | + | chr2.3:32066518-32066537 | MS.gene60883:CDS | 40.0% | |
GTCCAAAGGAAAAGGGTAAT+TGG | + | chr2.3:32066980-32066999 | MS.gene60883:CDS | 40.0% | |
GTGAATGTTCCTCCAAACAT+TGG | - | chr2.3:32066370-32066389 | None:intergenic | 40.0% | |
GTGAGTCTTCTACATGGATT+TGG | + | chr2.3:32065891-32065910 | MS.gene60883:CDS | 40.0% | |
TAAACCACAGGTCTTTGTGT+CGG | - | chr2.3:32066631-32066650 | None:intergenic | 40.0% | |
TATTTGCATCGTCAACAGGT+AGG | - | chr2.3:32066291-32066310 | None:intergenic | 40.0% | |
TCTGACACACATGACTTTGT+TGG | - | chr2.3:32065852-32065871 | None:intergenic | 40.0% | |
TGACACACATGACTTTGTTG+GGG | - | chr2.3:32065850-32065869 | None:intergenic | 40.0% | |
! | ATTGGGAGCATGTGACATTA+AGG | + | chr2.3:32066491-32066510 | MS.gene60883:CDS | 40.0% |
! | CCCAACAACAAACCTCTTTT+TGG | + | chr2.3:32065629-32065648 | MS.gene60883:CDS | 40.0% |
! | CTAACAATGATGGTGCCTAT+TGG | + | chr2.3:32066260-32066279 | MS.gene60883:CDS | 40.0% |
! | GGAGCGTTACTATACAAGAA+AGG | + | chr2.3:32066181-32066200 | MS.gene60883:CDS | 40.0% |
! | TTGGGAGCATGTGACATTAA+GGG | + | chr2.3:32066492-32066511 | MS.gene60883:CDS | 40.0% |
!! | AAAGAGGTTTGTTGTTGGGT+TGG | - | chr2.3:32065628-32065647 | None:intergenic | 40.0% |
!! | AACTCTACTTTTGCTTTCCC+AGG | - | chr2.3:32066430-32066449 | None:intergenic | 40.0% |
!! | AGGTGAACATGTTGGTGATT+GGG | + | chr2.3:32066474-32066493 | MS.gene60883:CDS | 40.0% |
!! | CCATTTTGTGCTATTGCAAC+AGG | - | chr2.3:32066220-32066239 | None:intergenic | 40.0% |
!! | GGTTTACCAAAAGAAGTGCT+GGG | + | chr2.3:32066940-32066959 | MS.gene60883:CDS | 40.0% |
!! | TAGGTGAACATGTTGGTGAT+TGG | + | chr2.3:32066473-32066492 | MS.gene60883:CDS | 40.0% |
!! | TCTACCCTTTTAATGGACCT+GGG | + | chr2.3:32066410-32066429 | MS.gene60883:CDS | 40.0% |
!! | TTCTACCCTTTTAATGGACC+TGG | + | chr2.3:32066409-32066428 | MS.gene60883:CDS | 40.0% |
AACAGGTAGGTCAAGCCAAT+AGG | - | chr2.3:32066278-32066297 | None:intergenic | 45.0% | |
AAGACTCACATTGCTCTGTG+AGG | - | chr2.3:32065880-32065899 | None:intergenic | 45.0% | |
ACCAACAGGTCCAAAGGAAA+AGG | + | chr2.3:32066972-32066991 | MS.gene60883:CDS | 45.0% | |
ATTGAACACTGCATCCGTCA+CGG | + | chr2.3:32065727-32065746 | MS.gene60883:CDS | 45.0% | |
CATGACTGTGTTTGCGAAAC+TGG | - | chr2.3:32065462-32065481 | None:intergenic | 45.0% | |
CATGCATCATATCCACATGC+TGG | + | chr2.3:32066667-32066686 | MS.gene60883:CDS | 45.0% | |
CATTGTTAGGATCCTGAGGA+AGG | - | chr2.3:32066249-32066268 | None:intergenic | 45.0% | |
CCAACAGGTCCAAAGGAAAA+GGG | + | chr2.3:32066973-32066992 | MS.gene60883:CDS | 45.0% | |
CCATCATTGTTAGGATCCTG+AGG | - | chr2.3:32066253-32066272 | None:intergenic | 45.0% | |
CCTCAGGATCCTAACAATGA+TGG | + | chr2.3:32066250-32066269 | MS.gene60883:CDS | 45.0% | |
CTTGTGTTGTGGTGACAACA+AGG | - | chr2.3:32065817-32065836 | None:intergenic | 45.0% | |
GACACACATGACTTTGTTGG+GGG | - | chr2.3:32065849-32065868 | None:intergenic | 45.0% | |
GACCTGTGGTTTATGCTTCT+CGG | + | chr2.3:32066638-32066657 | MS.gene60883:CDS | 45.0% | |
GCTTGAATGTGTGGTCAATG+GGG | - | chr2.3:32065313-32065332 | None:intergenic | 45.0% | |
GCTTTCCCAGGTCCATTAAA+AGG | - | chr2.3:32066418-32066437 | None:intergenic | 45.0% | |
GGAAGGTTTGTCTTGTGTTG+TGG | - | chr2.3:32065828-32065847 | None:intergenic | 45.0% | |
GGTACCTTCGTTGCTCAAAA+TGG | + | chr2.3:32065986-32066005 | MS.gene60883:CDS | 45.0% | |
TATCCATAAGTCAGTCCCGT+TGG | - | chr2.3:32065584-32065603 | None:intergenic | 45.0% | |
TTGGCTGTAGCTTCCTAACA+TGG | - | chr2.3:32065609-32065628 | None:intergenic | 45.0% | |
! | CTCACCATTTTGAGCAACGA+AGG | - | chr2.3:32065993-32066012 | None:intergenic | 45.0% |
! | GGGTTTACCAAAAGAAGTGC+TGG | + | chr2.3:32066939-32066958 | MS.gene60883:CDS | 45.0% |
! | TTTTCCGACACAAAGACCTG+TGG | + | chr2.3:32066624-32066643 | MS.gene60883:CDS | 45.0% |
!! | ATGCTGGCCTTCATCTACTA+GGG | + | chr2.3:32066683-32066702 | MS.gene60883:CDS | 45.0% |
AGTAGATGAAGGCCAGCATG+TGG | - | chr2.3:32066682-32066701 | None:intergenic | 50.0% | |
CACATGACTTTGTTGGGGGA+AGG | - | chr2.3:32065845-32065864 | None:intergenic | 50.0% | |
CGCCTCAGTGTATGAACCAA+CGG | + | chr2.3:32065565-32065584 | MS.gene60883:CDS | 50.0% | |
GCCTCAGTGTATGAACCAAC+GGG | + | chr2.3:32065566-32065585 | MS.gene60883:CDS | 50.0% | |
GGAGTCTTGATCAACCGTGA+CGG | - | chr2.3:32065744-32065763 | None:intergenic | 50.0% | |
GTGGTTTATGCTTCTCGGCA+TGG | + | chr2.3:32066643-32066662 | MS.gene60883:CDS | 50.0% | |
TGACAACAAGGCCTACAGCA+TGG | - | chr2.3:32065805-32065824 | None:intergenic | 50.0% | |
TGGCTACCAATAGCACCTGA+TGG | + | chr2.3:32065776-32065795 | MS.gene60883:CDS | 50.0% | |
! | CCCTTTTCCTTTGGACCTGT+TGG | - | chr2.3:32066976-32066995 | None:intergenic | 50.0% |
! | GAACCAACGGGACTGACTTA+TGG | + | chr2.3:32065578-32065597 | MS.gene60883:CDS | 50.0% |
! | TCCTCTCCCAGCACTTCTTT+TGG | - | chr2.3:32066949-32066968 | None:intergenic | 50.0% |
! | TGCCGAGAAGCATAAACCAC+AGG | - | chr2.3:32066643-32066662 | None:intergenic | 50.0% |
! | TGGTAGCCATCAGGTGCTAT+TGG | - | chr2.3:32065785-32065804 | None:intergenic | 50.0% |
!! | AAAGAAGTGCTGGGAGAGGA+AGG | + | chr2.3:32066949-32066968 | MS.gene60883:CDS | 50.0% |
!! | ACCAAAAGAAGTGCTGGGAG+AGG | + | chr2.3:32066945-32066964 | MS.gene60883:CDS | 50.0% |
!! | CATGCTGGCCTTCATCTACT+AGG | + | chr2.3:32066682-32066701 | MS.gene60883:CDS | 50.0% |
!! | TCCCGTTGGTTCATACACTG+AGG | - | chr2.3:32065570-32065589 | None:intergenic | 50.0% |
CCTACAGCATGGTAGCCATC+AGG | - | chr2.3:32065794-32065813 | None:intergenic | 55.0% | |
CCTGATGGCTACCATGCTGT+AGG | + | chr2.3:32065791-32065810 | MS.gene60883:CDS | 55.0% | |
GGAAGGACCAACAGGTCCAA+AGG | + | chr2.3:32066966-32066985 | MS.gene60883:CDS | 55.0% | |
! | AAAGTTTGGGGCGCCTACGA+AGG | + | chr2.3:32065524-32065543 | MS.gene60883:CDS | 55.0% |
! | AAGGTACCAACGCGAACACC+GGG | - | chr2.3:32065974-32065993 | None:intergenic | 55.0% |
!! | GAAGGTACCAACGCGAACAC+CGG | - | chr2.3:32065975-32065994 | None:intergenic | 55.0% |
AAAGCTCCCGGTGTTCGCGT+TGG | + | chr2.3:32065965-32065984 | MS.gene60883:CDS | 60.0% | |
ATCGTCCGGTCCACCTTCGT+AGG | - | chr2.3:32065540-32065559 | None:intergenic | 60.0% | |
CTGGGAGAGGAAGGACCAAC+AGG | + | chr2.3:32066958-32066977 | MS.gene60883:CDS | 60.0% | |
GAAGGTGGACCGGACGATCA+AGG | + | chr2.3:32065542-32065561 | MS.gene60883:CDS | 60.0% | |
TGTGGTCAATGGGGCGAGAG+CGG | - | chr2.3:32065304-32065323 | None:intergenic | 60.0% | |
! | ACTGAGGCGCCTTGATCGTC+CGG | - | chr2.3:32065554-32065573 | None:intergenic | 60.0% |
GTGGTCAATGGGGCGAGAGC+GGG | - | chr2.3:32065303-32065322 | None:intergenic | 65.0% | |
! | GTTTGGGGCGCCTACGAAGG+TGG | + | chr2.3:32065527-32065546 | MS.gene60883:CDS | 65.0% |
GGGCGCCTACGAAGGTGGAC+CGG | + | chr2.3:32065532-32065551 | MS.gene60883:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 32065248 | 32067020 | 32065248 | ID=MS.gene60883 |
chr2.3 | mRNA | 32065248 | 32067020 | 32065248 | ID=MS.gene60883.t1;Parent=MS.gene60883 |
chr2.3 | exon | 32065248 | 32067020 | 32065248 | ID=MS.gene60883.t1.exon1;Parent=MS.gene60883.t1 |
chr2.3 | CDS | 32065248 | 32067020 | 32065248 | ID=cds.MS.gene60883.t1;Parent=MS.gene60883.t1 |
Gene Sequence |
Protein sequence |